FF:11700-123A8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005444 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005444 | ||
|accession_numbers=CAGE;DRX008359;DRR009231;DRZ000656;DRZ002041;DRZ012006;DRZ013391 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037179;DRR041545;DRZ007187 | |||
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000094,FF:0000001 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor3.CNhs12127.11700-123A8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor3.CNhs12127.11700-123A8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor3.CNhs12127.11700-123A8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor3.CNhs12127.11700-123A8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520umbilical%252c%2520donor3.CNhs12127.11700-123A8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11700-123A8 | |id=FF:11700-123A8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000094 | ||
|is_obsolete= | |||
|library_id=CNhs12127 | |||
|library_id_phase_based=2:CNhs12127 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11700 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10011.GTTTCG.11700 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11700 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10011.GTTTCG.11700 | |||
|name=Mesenchymal Stem Cells - umbilical, donor3 | |name=Mesenchymal Stem Cells - umbilical, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12127,LSID839,release011,COMPLETED | |profile_hcage=CNhs12127,LSID839,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10011,,, | |profile_srnaseq=SRhi10011,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.10052589038317,0,0.346447385148662,0.20025382479564,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269345716470745,0,0,0,0,0,0.162886024201499,0,0,0.407337966124429,0,0,0,0,0,0,0,0,0,0,0,0,0.163527580495084,0.212621845230502,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.422668726819172,0,0,0,0.443302194660686,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0794887680553426,0,0,0,-0.0584468268118252,0.105181086406799,0,0,0,0,-0.0980353512377064,0.323899185380155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.212354291584985,0.428266885931376,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0,0,0,0.0136650451839917,0,-0.0514174919328362,-0.143515142523472,0,0,-0.166435166440014,0,0.260843920469556,0,0,0,0,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0,0,-0.0186252810838506,-0.305472230898407,0,-0.0438361009147316,-0.0683442610773682,0,0,0,0,-0.139818709099546,0,0.139964436675816,-0.0827201683234173,-0.221611588102807,0.0763632554588638,-0.055712496781182,0,0,0,0.0780852985071245,-0.053064142647724,0,0,0.21997647189249,-0.181349618560659,0,0,-0.130200661082079,0,-0.127626436400847,0.245333778880992,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15384089658815,-0.326988596678969,0,0,0,0,-0.125917666834016,0,0,0.167008399946724,0.218691508322093,-0.0219074821565448,-0.0940761915121139,0,-0.302389727009913,-0.0447820628987646,-0.0393446552618074,-0.10432766151982,0.113442071098418,0.232687007269325,0,0.141414194452899,0.0438463600206743,-0.0810615402628715,0.177950746511182,0,0.376213082263624,-0.0897425238711411,0,0,0,-0.342475060418257,0,-0.237277626997998,0.0501798414265173,-0.108163059334436,0.0339555512121417,0.0343241821369671,0.185977622027833,0.193501123067799,-0.0395325284566706,0.0828581030066962,0,0.227141809136583,0,0,-0.0435851011107832,-0.0294548893063441,-0.0769644508003009,0.0931214831283423,0,-0.483977461810981,-0.0683442610773682,0,0.128063757559782,0.289068628764064,0,0.0040776810207267,-0.317933310401856,0,0,0,0,0,0.244037858863636,-0.116823416210994,0.0279883589140114,0,0.0214646256266156,-0.0387670389408963,-0.0271388024009411,0,-0.070199026181246,-0.102621553344297,-0.0372302318917362,-0.117936204775689,-0.0067041196764287,0.105206777065453,0.0122857873589082,-0.0334520859249923,0.210362172813598,-0.0584468268118252,-0.469628013306175,-0.708380651750326,0.131961771527236,-0.0151942175733465,-0.0479935128256617,1.29300142006657,0,-0.174597094211359,-0.418654211151968,0,-0.241773580585208,0,-0.254196163437776,0,-0.296681108185151,0,0.295982822250059,-0.000139195569949235,-0.439289374580686,-0.433833475318213,0,-0.0708440308751761,-0.0791832814669525,0,0.150284353647192,0,0,0.389927472568652,-0.27502723969341,-0.211650427864589,-0.138989456679195,0,-0.157323180184322,0,0,-0.214202131507552,-0.235476037764389,0,0.486963048652076,0.393206962649024,0.926362870961826,0.306697653384238,0,0,0.505726067643372,0,0,-0.0656335079147394,0,-0.0794887680553426,0.626682071144004,0.063658536804465,-0.108622809454255,0,0,0.0833161545043805,0,0.0406295979464499,0,0,-0.0385469331892375,0,0,0,0.260843920469556,-0.107263351008158,0,-0.0270937533770426,0,0,0,0,0,-0.209777263610554,0.185461225686843,0,0.11988021132174,0,0,0,0,0,0.0266569563412176,0,0,0.175765525749388,-0.0125412402505657,-0.12301741567642,0,0,0,0,0.0451205179160815,-0.203236562094724,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.022397662345171,0,0,0,0.647798370760311,0,0,0,0,-0.533711058768145,0,0,0.00082680481895514,0,0.0679352703318525,-0.0815818795468414,0,-0.0308569305282513,0.604384235233531,0.164791338021663,0,0,-0.261347131789888,0,0,-0.403187343427913,0,0,0,0,0,0,0,0,0,-0.214314512399756,0,0,0,0,0,0,0,0,0,0,0,-0.0401851388416681,0.330444670160662,-0.0640596705171081,0,0,0,0,0,0,-0.0241060230789031,-0.053283000255417,0,0,0,0,0,0,0,0,-0.210582019193686,0,0,0,0,0,0.443302194660686,0,0,0,0,0.40050764959128,0,0,0.431585524113507,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.346447385148662,0,0,0,0,0,0,0,-0.0139893777365343,0,0,0,0,0.146959546760579,0,0,0,0.1560475356804,0,0.10052589038317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211334363409586,0,0,0,0.495310397832138,0,0.00732662640611914,-0.0568589461625992,0,0,0.154244470975399,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,0.162886024201499,0,0,-0.0920328098005262,0,0,0,0,0.454920649071617,0,0.028401648445958,0.198261241538084,-0.0187864415412932,0,0,0,-0.054385572482455,0.422668726819172,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269345716470745,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211334363409586,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552738509936697,0,0,0,0.0477576908125125,0,0,0,0,0,0,0,0,0.260843920469556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0172398598687776,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212621845230502,0,0.176467288239529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.451905834346708,0,0,0,0,0.492657445242372,0,0,0,0,0,0,0,0.130421960234778,0,0,0,0,0,0,0,0,0,0,0,0,0,0.455337048018516,0,0,0.392123005544071,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0.540294555903291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.197203045282097,0.428266885931376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.22430211587262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,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| |||
|rna_box=123 | |rna_box=123 | ||
|rna_catalog_number=SC7535 | |rna_catalog_number=SC7535 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=123A8 | |rna_tube_id=123A8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10011.GTTTCG | |||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.17908470496444e-222!GO:0005737;cytoplasm;7.08819323778482e-194!GO:0043231;intracellular membrane-bound organelle;6.96387704030874e-178!GO:0043226;organelle;6.96387704030874e-178!GO:0043229;intracellular organelle;1.04248409598076e-177!GO:0043227;membrane-bound organelle;1.69022410982052e-177!GO:0044444;cytoplasmic part;1.93861309868191e-148!GO:0044422;organelle part;3.90008422675611e-146!GO:0044446;intracellular organelle part;5.59969262294585e-145!GO:0032991;macromolecular complex;5.24004301221954e-92!GO:0030529;ribonucleoprotein complex;4.52755909248031e-87!GO:0044237;cellular metabolic process;8.57866173002481e-86!GO:0044238;primary metabolic process;5.72439923156567e-84!GO:0005739;mitochondrion;1.7240703211243e-82!GO:0043233;organelle lumen;9.19151606242066e-71!GO:0031974;membrane-enclosed lumen;9.19151606242066e-71!GO:0043170;macromolecule metabolic process;2.53957130822241e-70!GO:0005515;protein binding;4.11615762943062e-62!GO:0044428;nuclear part;8.14186601076882e-62!GO:0003723;RNA binding;3.31022237656529e-59!GO:0005840;ribosome;2.61999623992671e-58!GO:0005634;nucleus;4.77649479497642e-56!GO:0031090;organelle membrane;9.85903830294299e-55!GO:0044429;mitochondrial part;2.21915582271923e-54!GO:0009058;biosynthetic process;4.06527498792742e-53!GO:0003735;structural constituent of ribosome;1.02355118348995e-51!GO:0006412;translation;4.83180406862108e-51!GO:0044249;cellular biosynthetic process;3.97029944222687e-47!GO:0019538;protein metabolic process;1.84705384324821e-45!GO:0043234;protein complex;9.00223657132809e-45!GO:0031967;organelle envelope;3.92528721428062e-44!GO:0009059;macromolecule biosynthetic process;6.64608901962876e-44!GO:0031975;envelope;8.95202889091703e-44!GO:0033279;ribosomal subunit;1.42276138601567e-43!GO:0006396;RNA processing;7.16315179202433e-42!GO:0044260;cellular macromolecule metabolic process;7.43877362630282e-41!GO:0016043;cellular component organization and biogenesis;4.01819344267843e-40!GO:0044267;cellular protein metabolic process;8.0264851938794e-40!GO:0005829;cytosol;7.64060123309881e-38!GO:0031981;nuclear lumen;4.02008120269322e-37!GO:0005740;mitochondrial envelope;7.17190099908486e-36!GO:0033036;macromolecule localization;4.4763481897531e-34!GO:0015031;protein transport;6.43650447280335e-34!GO:0031966;mitochondrial membrane;1.17286590793185e-33!GO:0016071;mRNA metabolic process;1.09329421656502e-32!GO:0043283;biopolymer metabolic process;2.71361870579752e-32!GO:0019866;organelle inner membrane;5.15204931660835e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.01622487039548e-31!GO:0043228;non-membrane-bound organelle;1.46884503811219e-31!GO:0043232;intracellular non-membrane-bound organelle;1.46884503811219e-31!GO:0008104;protein localization;2.45427943450498e-31!GO:0045184;establishment of protein localization;3.08782582249368e-31!GO:0005743;mitochondrial inner membrane;1.30879897683348e-30!GO:0010467;gene expression;2.55608238118974e-30!GO:0065003;macromolecular complex assembly;2.75950927600576e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.04215989654519e-30!GO:0006259;DNA metabolic process;4.0978039093155e-29!GO:0008380;RNA splicing;5.93911069309481e-29!GO:0006996;organelle organization and biogenesis;7.03414530372093e-29!GO:0006397;mRNA processing;2.97396128876094e-28!GO:0046907;intracellular transport;5.69050368038398e-28!GO:0022607;cellular component assembly;1.03802155253054e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.42371033826831e-24!GO:0044445;cytosolic part;1.57555211771193e-24!GO:0031980;mitochondrial lumen;1.38361293507183e-23!GO:0005759;mitochondrial matrix;1.38361293507183e-23!GO:0044455;mitochondrial membrane part;1.75307914800664e-23!GO:0005783;endoplasmic reticulum;3.5851403845002e-23!GO:0005681;spliceosome;6.40786767882377e-23!GO:0006886;intracellular protein transport;7.45676164618882e-23!GO:0006119;oxidative phosphorylation;8.70362827314689e-23!GO:0005654;nucleoplasm;1.19271470271681e-22!GO:0015935;small ribosomal subunit;2.26926772513837e-22!GO:0015934;large ribosomal subunit;2.64242115470133e-22!GO:0007049;cell cycle;2.04865272868806e-21!GO:0006457;protein folding;3.30134526229539e-21!GO:0012505;endomembrane system;6.16959375548344e-21!GO:0044432;endoplasmic reticulum part;6.55783112621515e-20!GO:0051186;cofactor metabolic process;7.05537023601838e-20!GO:0005746;mitochondrial respiratory chain;2.45784773065729e-19!GO:0000166;nucleotide binding;7.80869261886256e-19!GO:0044451;nucleoplasm part;1.88509550998527e-18!GO:0016462;pyrophosphatase activity;3.62333341866904e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.46045559169834e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;7.68162616704228e-18!GO:0017111;nucleoside-triphosphatase activity;1.94627205774756e-17!GO:0051649;establishment of cellular localization;2.49004700385553e-17!GO:0048770;pigment granule;2.49004700385553e-17!GO:0042470;melanosome;2.49004700385553e-17!GO:0051641;cellular localization;5.23069201059969e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.19767773129049e-17!GO:0022402;cell cycle process;8.93523373444274e-17!GO:0050136;NADH dehydrogenase (quinone) activity;1.25937447369685e-16!GO:0003954;NADH dehydrogenase activity;1.25937447369685e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.25937447369685e-16!GO:0000278;mitotic cell cycle;1.950615714237e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.03293406633765e-16!GO:0005794;Golgi apparatus;3.81327092426825e-16!GO:0005761;mitochondrial ribosome;7.81997032491912e-16!GO:0000313;organellar ribosome;7.81997032491912e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.12068037199756e-15!GO:0016874;ligase activity;1.25923394507608e-15!GO:0006732;coenzyme metabolic process;1.67875978339806e-15!GO:0005730;nucleolus;3.10898757074784e-15!GO:0022618;protein-RNA complex assembly;6.3137540957698e-15!GO:0042775;organelle ATP synthesis coupled electron transport;9.11251233304585e-15!GO:0042773;ATP synthesis coupled electron transport;9.11251233304585e-15!GO:0044248;cellular catabolic process;1.32329869209054e-14!GO:0051082;unfolded protein binding;1.48375973053751e-14!GO:0030964;NADH dehydrogenase complex (quinone);1.81667720855896e-14!GO:0045271;respiratory chain complex I;1.81667720855896e-14!GO:0005747;mitochondrial respiratory chain complex I;1.81667720855896e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.49312069747804e-14!GO:0006974;response to DNA damage stimulus;2.98651188502588e-14!GO:0003676;nucleic acid binding;4.17658273395992e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;5.99362616362016e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.2524199642611e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.01140845049773e-13!GO:0005789;endoplasmic reticulum membrane;1.22279712124748e-13!GO:0017076;purine nucleotide binding;3.09654730217656e-13!GO:0032553;ribonucleotide binding;3.23833767769098e-13!GO:0032555;purine ribonucleotide binding;3.23833767769098e-13!GO:0044265;cellular macromolecule catabolic process;3.23833767769098e-13!GO:0008134;transcription factor binding;3.95170288032369e-13!GO:0022403;cell cycle phase;1.05954812395665e-12!GO:0008135;translation factor activity, nucleic acid binding;1.6601743240562e-12!GO:0051276;chromosome organization and biogenesis;1.98730228160732e-12!GO:0006281;DNA repair;2.12721758016148e-12!GO:0009055;electron carrier activity;2.42054014992861e-12!GO:0009057;macromolecule catabolic process;3.16055687400077e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;3.55959426381216e-12!GO:0000375;RNA splicing, via transesterification reactions;3.55959426381216e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.55959426381216e-12!GO:0005694;chromosome;4.33717541052626e-12!GO:0006605;protein targeting;5.44637161656355e-12!GO:0048193;Golgi vesicle transport;7.23462420717128e-12!GO:0043285;biopolymer catabolic process;8.42084268658478e-12!GO:0006512;ubiquitin cycle;1.26375468062169e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;1.5564157979448e-11!GO:0044427;chromosomal part;1.70344734892487e-11!GO:0005524;ATP binding;2.61640088635601e-11!GO:0000087;M phase of mitotic cell cycle;2.75809354985418e-11!GO:0007067;mitosis;3.46366774046945e-11!GO:0009719;response to endogenous stimulus;4.40833284687998e-11!GO:0006260;DNA replication;4.40833284687998e-11!GO:0032559;adenyl ribonucleotide binding;4.851599560621e-11!GO:0006399;tRNA metabolic process;5.387661036496e-11!GO:0016491;oxidoreductase activity;5.54080130784283e-11!GO:0006323;DNA packaging;6.25144291654834e-11!GO:0030554;adenyl nucleotide binding;6.25144291654834e-11!GO:0051188;cofactor biosynthetic process;9.20235743113683e-11!GO:0005793;ER-Golgi intermediate compartment;1.36039752370886e-10!GO:0065004;protein-DNA complex assembly;3.27544309026664e-10!GO:0042623;ATPase activity, coupled;4.09318785291031e-10!GO:0042254;ribosome biogenesis and assembly;4.27459062649612e-10!GO:0016070;RNA metabolic process;6.24512434318828e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;6.6273430738947e-10!GO:0003743;translation initiation factor activity;7.33132641914816e-10!GO:0016887;ATPase activity;8.12608714016566e-10!GO:0019941;modification-dependent protein catabolic process;1.04948873971194e-09!GO:0043632;modification-dependent macromolecule catabolic process;1.04948873971194e-09!GO:0044257;cellular protein catabolic process;1.19033148730959e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.1910771015441e-09!GO:0043412;biopolymer modification;1.35241960547146e-09!GO:0006163;purine nucleotide metabolic process;1.46711294680227e-09!GO:0016192;vesicle-mediated transport;1.47655039960608e-09!GO:0006511;ubiquitin-dependent protein catabolic process;1.56728799558085e-09!GO:0006333;chromatin assembly or disassembly;1.56728799558085e-09!GO:0005635;nuclear envelope;1.60622098136009e-09!GO:0000074;regulation of progression through cell cycle;2.02947886543684e-09!GO:0051726;regulation of cell cycle;2.12721786167902e-09!GO:0051301;cell division;2.51132034055069e-09!GO:0009259;ribonucleotide metabolic process;2.70281798840226e-09!GO:0006413;translational initiation;3.34271447172719e-09!GO:0000279;M phase;4.41301060919418e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.5802107411516e-09!GO:0009150;purine ribonucleotide metabolic process;6.51092829947292e-09!GO:0030163;protein catabolic process;6.75652200671676e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.75652200671676e-09!GO:0006164;purine nucleotide biosynthetic process;6.92584738888837e-09!GO:0005788;endoplasmic reticulum lumen;7.28659020130791e-09!GO:0016604;nuclear body;8.46734883701186e-09!GO:0006334;nucleosome assembly;8.92858142309658e-09!GO:0031965;nuclear membrane;9.03089064055447e-09!GO:0009056;catabolic process;1.09216014098034e-08!GO:0006913;nucleocytoplasmic transport;1.42783433313044e-08!GO:0000785;chromatin;1.73003348730687e-08!GO:0003712;transcription cofactor activity;1.83160043983162e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.83160043983162e-08!GO:0004812;aminoacyl-tRNA ligase activity;1.83160043983162e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.83160043983162e-08!GO:0012501;programmed cell death;1.83160043983162e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.92397751526292e-08!GO:0008565;protein transporter activity;1.92615962645128e-08!GO:0016740;transferase activity;2.01058362322535e-08!GO:0044453;nuclear membrane part;2.32449783200105e-08!GO:0009260;ribonucleotide biosynthetic process;2.77175994199282e-08!GO:0006446;regulation of translational initiation;2.77175994199282e-08!GO:0051169;nuclear transport;2.98300401372221e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.9852710818489e-08!GO:0031497;chromatin assembly;3.05224252634708e-08!GO:0006464;protein modification process;3.26172314493893e-08!GO:0006461;protein complex assembly;3.35347160638086e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.45142258147052e-08!GO:0009060;aerobic respiration;3.57159965722401e-08!GO:0015078;hydrogen ion transmembrane transporter activity;3.61743719462153e-08!GO:0009141;nucleoside triphosphate metabolic process;3.82807296880954e-08!GO:0009108;coenzyme biosynthetic process;3.98354723771746e-08!GO:0006915;apoptosis;4.31498107999107e-08!GO:0043038;amino acid activation;4.76150582196456e-08!GO:0006418;tRNA aminoacylation for protein translation;4.76150582196456e-08!GO:0043039;tRNA aminoacylation;4.76150582196456e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.13990078712413e-08!GO:0009144;purine nucleoside triphosphate metabolic process;6.13990078712413e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.71122513370119e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.71122513370119e-08!GO:0006091;generation of precursor metabolites and energy;7.95413209329301e-08!GO:0065002;intracellular protein transport across a membrane;1.31788579989405e-07!GO:0009117;nucleotide metabolic process;1.32114413752875e-07!GO:0017038;protein import;1.33581418920129e-07!GO:0015986;ATP synthesis coupled proton transport;1.41033773891285e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.41033773891285e-07!GO:0045333;cellular respiration;1.4190749317207e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.42160656529746e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.42160656529746e-07!GO:0016853;isomerase activity;1.47517326634708e-07!GO:0008219;cell death;2.43384977877769e-07!GO:0016265;death;2.43384977877769e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.75926589154668e-07!GO:0016779;nucleotidyltransferase activity;2.90201656253943e-07!GO:0008026;ATP-dependent helicase activity;3.18689323085695e-07!GO:0019829;cation-transporting ATPase activity;3.36629311622828e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;3.49238446998445e-07!GO:0008639;small protein conjugating enzyme activity;4.41268556200244e-07!GO:0030120;vesicle coat;4.5551465596551e-07!GO:0030662;coated vesicle membrane;4.5551465596551e-07!GO:0007005;mitochondrion organization and biogenesis;4.83587187059602e-07!GO:0004386;helicase activity;5.59086807690461e-07!GO:0046034;ATP metabolic process;5.711403855483e-07!GO:0048475;coated membrane;6.24895079337121e-07!GO:0030117;membrane coat;6.24895079337121e-07!GO:0006364;rRNA processing;6.84095334699431e-07!GO:0003697;single-stranded DNA binding;7.49445004745093e-07!GO:0044431;Golgi apparatus part;8.0651100753438e-07!GO:0015630;microtubule cytoskeleton;8.08528460386138e-07!GO:0048523;negative regulation of cellular process;8.13941670194591e-07!GO:0006099;tricarboxylic acid cycle;9.20051986332006e-07!GO:0046356;acetyl-CoA catabolic process;9.20051986332006e-07!GO:0004842;ubiquitin-protein ligase activity;9.84743855873623e-07!GO:0051329;interphase of mitotic cell cycle;9.84743855873623e-07!GO:0045259;proton-transporting ATP synthase complex;1.02907795320924e-06!GO:0016072;rRNA metabolic process;1.04543313004819e-06!GO:0006084;acetyl-CoA metabolic process;1.10571126853093e-06!GO:0006754;ATP biosynthetic process;1.10571126853093e-06!GO:0006753;nucleoside phosphate metabolic process;1.10571126853093e-06!GO:0006366;transcription from RNA polymerase II promoter;1.14700071370543e-06!GO:0016787;hydrolase activity;1.21831141571721e-06!GO:0016607;nuclear speck;1.34483687502262e-06!GO:0005643;nuclear pore;1.3660434761847e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.52343546484396e-06!GO:0051187;cofactor catabolic process;1.760819279467e-06!GO:0006752;group transfer coenzyme metabolic process;1.98112880890925e-06!GO:0019787;small conjugating protein ligase activity;1.98112880890925e-06!GO:0043687;post-translational protein modification;2.20580013927597e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.44108474258134e-06!GO:0009109;coenzyme catabolic process;2.60025451012213e-06!GO:0008654;phospholipid biosynthetic process;2.67362091620234e-06!GO:0051325;interphase;2.69511618132674e-06!GO:0003924;GTPase activity;3.65246528574645e-06!GO:0005762;mitochondrial large ribosomal subunit;3.75302562545338e-06!GO:0000315;organellar large ribosomal subunit;3.75302562545338e-06!GO:0016859;cis-trans isomerase activity;4.50815870764584e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.64012608287487e-06!GO:0045454;cell redox homeostasis;5.39431189338513e-06!GO:0016568;chromatin modification;5.44143392180859e-06!GO:0005667;transcription factor complex;5.71135779076062e-06!GO:0005839;proteasome core complex (sensu Eukaryota);6.30295632634529e-06!GO:0046930;pore complex;6.59448345846671e-06!GO:0044262;cellular carbohydrate metabolic process;7.15078276073252e-06!GO:0000245;spliceosome assembly;8.90242455017642e-06!GO:0016881;acid-amino acid ligase activity;1.01362910402964e-05!GO:0005768;endosome;1.0786238449915e-05!GO:0008610;lipid biosynthetic process;1.64078037340776e-05!GO:0000139;Golgi membrane;1.64078037340776e-05!GO:0048519;negative regulation of biological process;1.68245318541901e-05!GO:0016564;transcription repressor activity;1.88107125221279e-05!GO:0031324;negative regulation of cellular metabolic process;1.88573085126666e-05!GO:0051246;regulation of protein metabolic process;2.0372682124664e-05!GO:0043067;regulation of programmed cell death;2.44243711807484e-05!GO:0043566;structure-specific DNA binding;2.44336567493282e-05!GO:0006082;organic acid metabolic process;2.58619938738472e-05!GO:0019843;rRNA binding;2.69553564343055e-05!GO:0042981;regulation of apoptosis;2.87119540945008e-05!GO:0050657;nucleic acid transport;3.0970206567615e-05!GO:0051236;establishment of RNA localization;3.0970206567615e-05!GO:0050658;RNA transport;3.0970206567615e-05!GO:0016023;cytoplasmic membrane-bound vesicle;3.11777020199414e-05!GO:0019752;carboxylic acid metabolic process;3.18526989823758e-05!GO:0003714;transcription corepressor activity;3.56096619476323e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.56096619476323e-05!GO:0004298;threonine endopeptidase activity;3.67353392687808e-05!GO:0006403;RNA localization;3.74727310948443e-05!GO:0043623;cellular protein complex assembly;3.81812143469255e-05!GO:0030867;rough endoplasmic reticulum membrane;3.97318487066029e-05!GO:0030176;integral to endoplasmic reticulum membrane;4.25413156835006e-05!GO:0000314;organellar small ribosomal subunit;4.3791082236416e-05!GO:0005763;mitochondrial small ribosomal subunit;4.3791082236416e-05!GO:0005798;Golgi-associated vesicle;4.39314415645978e-05!GO:0003899;DNA-directed RNA polymerase activity;4.5513085952772e-05!GO:0005819;spindle;4.68861815135466e-05!GO:0031988;membrane-bound vesicle;5.18040952770325e-05!GO:0051789;response to protein stimulus;5.43754753223753e-05!GO:0006986;response to unfolded protein;5.43754753223753e-05!GO:0005813;centrosome;5.71819584727431e-05!GO:0031968;organelle outer membrane;5.7819152702546e-05!GO:0000786;nucleosome;5.82305765257521e-05!GO:0005770;late endosome;5.94953446161704e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.29309314450381e-05!GO:0051170;nuclear import;6.40612055771312e-05!GO:0019867;outer membrane;6.42548841058566e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.91321734325445e-05!GO:0016563;transcription activator activity;7.0151699765525e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.31576332837669e-05!GO:0043069;negative regulation of programmed cell death;7.86409477686344e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.98572388617428e-05!GO:0031252;leading edge;8.86406280459527e-05!GO:0006916;anti-apoptosis;8.89114414906424e-05!GO:0045786;negative regulation of progression through cell cycle;9.12573851249785e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;9.40680094489397e-05!GO:0043066;negative regulation of apoptosis;0.000106409287498581!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000107243499646589!GO:0033116;ER-Golgi intermediate compartment membrane;0.000107715848780011!GO:0005773;vacuole;0.000113040610810117!GO:0006613;cotranslational protein targeting to membrane;0.000115897798424888!GO:0016126;sterol biosynthetic process;0.000116413858609586!GO:0005791;rough endoplasmic reticulum;0.000116413858609586!GO:0005525;GTP binding;0.000132513699716676!GO:0005815;microtubule organizing center;0.00013404624438965!GO:0006606;protein import into nucleus;0.00013404624438965!GO:0005741;mitochondrial outer membrane;0.000144161241604776!GO:0009165;nucleotide biosynthetic process;0.00015560676893558!GO:0044440;endosomal part;0.000170277196890886!GO:0010008;endosome membrane;0.000170277196890886!GO:0030133;transport vesicle;0.000174728729241549!GO:0046474;glycerophospholipid biosynthetic process;0.000174826301631997!GO:0008033;tRNA processing;0.00020649540743324!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000210339476307912!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00022693855059643!GO:0003724;RNA helicase activity;0.000227070068997482!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000246883995861376!GO:0009892;negative regulation of metabolic process;0.0002486788637515!GO:0043681;protein import into mitochondrion;0.000250572616702554!GO:0006261;DNA-dependent DNA replication;0.000261274058421713!GO:0032446;protein modification by small protein conjugation;0.000268591039573975!GO:0031410;cytoplasmic vesicle;0.000272964587868217!GO:0006626;protein targeting to mitochondrion;0.000299487270850105!GO:0031982;vesicle;0.000306141185935268!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000341894997546618!GO:0016567;protein ubiquitination;0.000369743657362985!GO:0003713;transcription coactivator activity;0.000390749680384832!GO:0008361;regulation of cell size;0.000431504917748753!GO:0051427;hormone receptor binding;0.000434439081535552!GO:0005048;signal sequence binding;0.000449248007326177!GO:0008094;DNA-dependent ATPase activity;0.000453907510728045!GO:0008250;oligosaccharyl transferase complex;0.000471881157771411!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000472049846227733!GO:0006520;amino acid metabolic process;0.000472279071738531!GO:0016049;cell growth;0.000480433299539949!GO:0006793;phosphorus metabolic process;0.000501560325645392!GO:0006796;phosphate metabolic process;0.000501560325645392!GO:0051028;mRNA transport;0.000515594976882849!GO:0046483;heterocycle metabolic process;0.000562909821032116!GO:0005905;coated pit;0.000586607095664268!GO:0043284;biopolymer biosynthetic process;0.000600855078886837!GO:0043021;ribonucleoprotein binding;0.000612667347924482!GO:0000323;lytic vacuole;0.000620775971323836!GO:0005764;lysosome;0.000620775971323836!GO:0046467;membrane lipid biosynthetic process;0.000723653292714879!GO:0005885;Arp2/3 protein complex;0.000801026325198379!GO:0016310;phosphorylation;0.00083871661794756!GO:0035257;nuclear hormone receptor binding;0.000843894032804168!GO:0051920;peroxiredoxin activity;0.000870422912987542!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000870422912987542!GO:0015399;primary active transmembrane transporter activity;0.000870422912987542!GO:0032561;guanyl ribonucleotide binding;0.000901603024888969!GO:0019001;guanyl nucleotide binding;0.000901603024888969!GO:0006695;cholesterol biosynthetic process;0.000924097199839004!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000928891251394828!GO:0018196;peptidyl-asparagine modification;0.000957881881517381!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000957881881517381!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00103739152453507!GO:0015002;heme-copper terminal oxidase activity;0.00103739152453507!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00103739152453507!GO:0004129;cytochrome-c oxidase activity;0.00103739152453507!GO:0016481;negative regulation of transcription;0.00108260092643215!GO:0006839;mitochondrial transport;0.00108809502549287!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0011047764929952!GO:0005657;replication fork;0.00115463367159017!GO:0000151;ubiquitin ligase complex;0.00117613938454492!GO:0006414;translational elongation;0.00118133551388845!GO:0050662;coenzyme binding;0.00120434482911583!GO:0005684;U2-dependent spliceosome;0.00127215465565981!GO:0006118;electron transport;0.00136447113302589!GO:0001558;regulation of cell growth;0.00136756449284559!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00147496055090023!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00148424969818473!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00151298292029588!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00151298292029588!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00152346932671404!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00152346932671404!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00152346932671404!GO:0008186;RNA-dependent ATPase activity;0.00156920696847794!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00157241750682413!GO:0042802;identical protein binding;0.00167010015759472!GO:0006383;transcription from RNA polymerase III promoter;0.00168698073802851!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00171161151285877!GO:0031072;heat shock protein binding;0.00175276211477522!GO:0030132;clathrin coat of coated pit;0.00188874502106152!GO:0006807;nitrogen compound metabolic process;0.00191017292067866!GO:0004576;oligosaccharyl transferase activity;0.00191121109943587!GO:0006979;response to oxidative stress;0.00191921556840071!GO:0015992;proton transport;0.00193008126028953!GO:0007006;mitochondrial membrane organization and biogenesis;0.00193403326221114!GO:0050794;regulation of cellular process;0.00193585002481969!GO:0006818;hydrogen transport;0.00194017646059612!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00201176878659656!GO:0006778;porphyrin metabolic process;0.00203109706537163!GO:0033013;tetrapyrrole metabolic process;0.00203109706537163!GO:0046489;phosphoinositide biosynthetic process;0.00205084131173555!GO:0003684;damaged DNA binding;0.00212954172857324!GO:0000075;cell cycle checkpoint;0.00213266872927263!GO:0006066;alcohol metabolic process;0.00214026278044589!GO:0022890;inorganic cation transmembrane transporter activity;0.00214842209895316!GO:0003678;DNA helicase activity;0.00217957388540751!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00223210447337673!GO:0043488;regulation of mRNA stability;0.00244701854674508!GO:0043487;regulation of RNA stability;0.00244701854674508!GO:0051287;NAD binding;0.00254588487845162!GO:0030036;actin cytoskeleton organization and biogenesis;0.0025835308129894!GO:0003729;mRNA binding;0.00283707074497601!GO:0048037;cofactor binding;0.00299682919167951!GO:0008168;methyltransferase activity;0.00304809491835833!GO:0016741;transferase activity, transferring one-carbon groups;0.00305530505384597!GO:0030663;COPI coated vesicle membrane;0.00305530505384597!GO:0030126;COPI vesicle coat;0.00305530505384597!GO:0030137;COPI-coated vesicle;0.0031212215585011!GO:0006740;NADPH regeneration;0.00325296722503863!GO:0006098;pentose-phosphate shunt;0.00325296722503863!GO:0019899;enzyme binding;0.00335766476363887!GO:0031301;integral to organelle membrane;0.00338203861178725!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00348856678064887!GO:0000082;G1/S transition of mitotic cell cycle;0.00356767111672406!GO:0006779;porphyrin biosynthetic process;0.00360829059145466!GO:0033014;tetrapyrrole biosynthetic process;0.00360829059145466!GO:0006402;mRNA catabolic process;0.00362842760230988!GO:0030880;RNA polymerase complex;0.00367267996049111!GO:0004004;ATP-dependent RNA helicase activity;0.00386505823476451!GO:0030658;transport vesicle membrane;0.00387547437366135!GO:0016125;sterol metabolic process;0.0040714174686663!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00411074718355871!GO:0009308;amine metabolic process;0.00424123969478439!GO:0051087;chaperone binding;0.00432513451601154!GO:0006595;polyamine metabolic process;0.00433643420911393!GO:0007051;spindle organization and biogenesis;0.00445718997255439!GO:0015631;tubulin binding;0.00454673843714693!GO:0006733;oxidoreduction coenzyme metabolic process;0.00463142604135002!GO:0032508;DNA duplex unwinding;0.00472242577572074!GO:0032392;DNA geometric change;0.00472242577572074!GO:0005996;monosaccharide metabolic process;0.00516044283075927!GO:0006950;response to stress;0.00526643575266901!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00527233185500077!GO:0007010;cytoskeleton organization and biogenesis;0.00529343418569342!GO:0000775;chromosome, pericentric region;0.00529343418569342!GO:0005975;carbohydrate metabolic process;0.00534038148605658!GO:0016272;prefoldin complex;0.00537093037751058!GO:0006401;RNA catabolic process;0.00537093037751058!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00560675589843983!GO:0042168;heme metabolic process;0.00566589465566633!GO:0019318;hexose metabolic process;0.00574030246786932!GO:0030118;clathrin coat;0.00581644008946513!GO:0006612;protein targeting to membrane;0.0058327066758191!GO:0016363;nuclear matrix;0.00593876674838058!GO:0005874;microtubule;0.00595758962730274!GO:0051168;nuclear export;0.00623635470857102!GO:0017166;vinculin binding;0.00634572285467275!GO:0030134;ER to Golgi transport vesicle;0.006417880513052!GO:0051539;4 iron, 4 sulfur cluster binding;0.00661360607758975!GO:0006519;amino acid and derivative metabolic process;0.00666587976932986!GO:0048471;perinuclear region of cytoplasm;0.0066696737921348!GO:0006007;glucose catabolic process;0.00678953040088139!GO:0005769;early endosome;0.00689889475903405!GO:0006302;double-strand break repair;0.0069357926951925!GO:0043492;ATPase activity, coupled to movement of substances;0.00711467593175902!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00715059205176592!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00765764305911901!GO:0006289;nucleotide-excision repair;0.00796142995250745!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00798943083093337!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00807509912807785!GO:0000428;DNA-directed RNA polymerase complex;0.00807509912807785!GO:0006268;DNA unwinding during replication;0.00817935812514231!GO:0008139;nuclear localization sequence binding;0.00823115889090617!GO:0000059;protein import into nucleus, docking;0.00827522324420608!GO:0051101;regulation of DNA binding;0.0083819036448634!GO:0009112;nucleobase metabolic process;0.00866458399210599!GO:0030659;cytoplasmic vesicle membrane;0.00870880504847374!GO:0040029;regulation of gene expression, epigenetic;0.00873470755430977!GO:0030027;lamellipodium;0.00874983563728038!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00896361732372674!GO:0048487;beta-tubulin binding;0.00900533071338263!GO:0044452;nucleolar part;0.00923124406785611!GO:0030660;Golgi-associated vesicle membrane;0.00935179681974649!GO:0003682;chromatin binding;0.00951528703344035!GO:0006783;heme biosynthetic process;0.00978859441886971!GO:0048500;signal recognition particle;0.0101609598172068!GO:0005774;vacuolar membrane;0.0101741806034176!GO:0005869;dynactin complex;0.0102459564300152!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0103325817582148!GO:0051252;regulation of RNA metabolic process;0.0104489582427729!GO:0000049;tRNA binding;0.0104872438342783!GO:0006509;membrane protein ectodomain proteolysis;0.0107438421010417!GO:0033619;membrane protein proteolysis;0.0107438421010417!GO:0006891;intra-Golgi vesicle-mediated transport;0.0107604553305459!GO:0006739;NADP metabolic process;0.0111534232842528!GO:0007040;lysosome organization and biogenesis;0.0114941703388433!GO:0030127;COPII vesicle coat;0.0114990441797389!GO:0012507;ER to Golgi transport vesicle membrane;0.0114990441797389!GO:0007050;cell cycle arrest;0.0115423401192376!GO:0065009;regulation of a molecular function;0.0116222099047012!GO:0031902;late endosome membrane;0.0120757668211053!GO:0005862;muscle thin filament tropomyosin;0.0120757668211053!GO:0008632;apoptotic program;0.0122411670516549!GO:0003711;transcription elongation regulator activity;0.0123102638750876!GO:0030029;actin filament-based process;0.0123102638750876!GO:0004177;aminopeptidase activity;0.0123988431938224!GO:0044255;cellular lipid metabolic process;0.0128412030619413!GO:0008286;insulin receptor signaling pathway;0.0130213575020642!GO:0030119;AP-type membrane coat adaptor complex;0.0139123301209089!GO:0008652;amino acid biosynthetic process;0.0141016592784383!GO:0045892;negative regulation of transcription, DNA-dependent;0.0142057705123542!GO:0048522;positive regulation of cellular process;0.0144397514684134!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0144406508366529!GO:0006506;GPI anchor biosynthetic process;0.0145419563629942!GO:0045792;negative regulation of cell size;0.0148255064143006!GO:0006220;pyrimidine nucleotide metabolic process;0.015138353548946!GO:0004364;glutathione transferase activity;0.0153394507272269!GO:0006790;sulfur metabolic process;0.0153545187510817!GO:0006650;glycerophospholipid metabolic process;0.0156648300880878!GO:0004003;ATP-dependent DNA helicase activity;0.0159597382904246!GO:0006352;transcription initiation;0.0163602483879823!GO:0030433;ER-associated protein catabolic process;0.0165639161296514!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0165639161296514!GO:0006769;nicotinamide metabolic process;0.0167248787678044!GO:0006497;protein amino acid lipidation;0.016768131974354!GO:0000084;S phase of mitotic cell cycle;0.0169371660308576!GO:0051540;metal cluster binding;0.0170850120272172!GO:0051536;iron-sulfur cluster binding;0.0170850120272172!GO:0007346;regulation of progression through mitotic cell cycle;0.0171930811137261!GO:0007088;regulation of mitosis;0.0171930811137261!GO:0006310;DNA recombination;0.0172308920417013!GO:0015036;disulfide oxidoreductase activity;0.0179799702688761!GO:0030308;negative regulation of cell growth;0.0183131682033438!GO:0016044;membrane organization and biogenesis;0.0183872886789314!GO:0030145;manganese ion binding;0.018550893636668!GO:0004518;nuclease activity;0.018654616910567!GO:0031529;ruffle organization and biogenesis;0.0188585427532455!GO:0030521;androgen receptor signaling pathway;0.0189505417708019!GO:0044433;cytoplasmic vesicle part;0.0190801297348303!GO:0033559;unsaturated fatty acid metabolic process;0.0192764891981759!GO:0006636;unsaturated fatty acid biosynthetic process;0.0192764891981759!GO:0006505;GPI anchor metabolic process;0.0194797378537445!GO:0003756;protein disulfide isomerase activity;0.0194797378537445!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0194797378537445!GO:0007264;small GTPase mediated signal transduction;0.0195659924987458!GO:0007021;tubulin folding;0.0195919655328078!GO:0044437;vacuolar part;0.0205873977441633!GO:0031418;L-ascorbic acid binding;0.020659772541018!GO:0051052;regulation of DNA metabolic process;0.0207964437351474!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0212251334492924!GO:0030125;clathrin vesicle coat;0.0213479588345141!GO:0030665;clathrin coated vesicle membrane;0.0213479588345141!GO:0009303;rRNA transcription;0.0216343611078271!GO:0030131;clathrin adaptor complex;0.0216412134681098!GO:0043414;biopolymer methylation;0.0220184260013097!GO:0006284;base-excision repair;0.022305148809603!GO:0016860;intramolecular oxidoreductase activity;0.02248107041014!GO:0042158;lipoprotein biosynthetic process;0.0232336511833876!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0232336511833876!GO:0045047;protein targeting to ER;0.0232336511833876!GO:0007033;vacuole organization and biogenesis;0.0235969680964182!GO:0000096;sulfur amino acid metabolic process;0.0236489335264129!GO:0007243;protein kinase cascade;0.0237189172919862!GO:0051098;regulation of binding;0.0245852929628585!GO:0040008;regulation of growth;0.0247277153829359!GO:0005637;nuclear inner membrane;0.0247277153829359!GO:0000339;RNA cap binding;0.0249364292085057!GO:0001726;ruffle;0.025225176805494!GO:0005765;lysosomal membrane;0.0259012276852778!GO:0016408;C-acyltransferase activity;0.0259631090462989!GO:0031300;intrinsic to organelle membrane;0.0264263970493399!GO:0035258;steroid hormone receptor binding;0.0264724917550704!GO:0005758;mitochondrial intermembrane space;0.0266168258410634!GO:0006458;'de novo' protein folding;0.0273409873718731!GO:0051084;'de novo' posttranslational protein folding;0.0273409873718731!GO:0030508;thiol-disulfide exchange intermediate activity;0.0277497584949651!GO:0008312;7S RNA binding;0.0280486578577321!GO:0000209;protein polyubiquitination;0.0282782798160683!GO:0006405;RNA export from nucleus;0.0282929951277187!GO:0035035;histone acetyltransferase binding;0.0284593160120535!GO:0019798;procollagen-proline dioxygenase activity;0.0286283799934895!GO:0005586;collagen type III;0.0288783108365468!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0293129504373005!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0298501719587675!GO:0019362;pyridine nucleotide metabolic process;0.0306014819428925!GO:0050178;phenylpyruvate tautomerase activity;0.0308604300396366!GO:0009451;RNA modification;0.0312414426717861!GO:0008538;proteasome activator activity;0.0318135840573119!GO:0043189;H4/H2A histone acetyltransferase complex;0.0319025139381717!GO:0045936;negative regulation of phosphate metabolic process;0.0324764075584078!GO:0031543;peptidyl-proline dioxygenase activity;0.0330811178613682!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.033216386252929!GO:0006730;one-carbon compound metabolic process;0.0334675122897649!GO:0008180;signalosome;0.0334675122897649!GO:0016407;acetyltransferase activity;0.0338050543039611!GO:0006767;water-soluble vitamin metabolic process;0.0344099138815707!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0346932932772109!GO:0006541;glutamine metabolic process;0.0351999472790716!GO:0004527;exonuclease activity;0.0353815917483815!GO:0008203;cholesterol metabolic process;0.0354406789998652!GO:0006275;regulation of DNA replication;0.0360971012715011!GO:0032984;macromolecular complex disassembly;0.0362680384276257!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0368691802456909!GO:0046365;monosaccharide catabolic process;0.0373306084236801!GO:0000123;histone acetyltransferase complex;0.0373509519257889!GO:0031970;organelle envelope lumen;0.0383191069895382!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0385623493315801!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0385623493315801!GO:0046519;sphingoid metabolic process;0.0386712583015702!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0388180368441412!GO:0010257;NADH dehydrogenase complex assembly;0.0388180368441412!GO:0033108;mitochondrial respiratory chain complex assembly;0.0388180368441412!GO:0050789;regulation of biological process;0.0389277230335736!GO:0007093;mitotic cell cycle checkpoint;0.0389277230335736!GO:0019206;nucleoside kinase activity;0.0390075787391367!GO:0005581;collagen;0.0393809802443715!GO:0004448;isocitrate dehydrogenase activity;0.0396362112601367!GO:0032259;methylation;0.0397153481593014!GO:0006643;membrane lipid metabolic process;0.0407203499262698!GO:0043022;ribosome binding;0.0409240101379776!GO:0030496;midbody;0.0414645371655395!GO:0030911;TPR domain binding;0.0414658679645565!GO:0006354;RNA elongation;0.0418112730844756!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0418965112661632!GO:0005832;chaperonin-containing T-complex;0.0420040594759104!GO:0043241;protein complex disassembly;0.0420891633474811!GO:0009116;nucleoside metabolic process;0.0420891633474811!GO:0016584;nucleosome positioning;0.0422609222426921!GO:0035267;NuA4 histone acetyltransferase complex;0.0425181396563565!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0426105440206888!GO:0031272;regulation of pseudopodium formation;0.0426105440206888!GO:0031269;pseudopodium formation;0.0426105440206888!GO:0031344;regulation of cell projection organization and biogenesis;0.0426105440206888!GO:0031268;pseudopodium organization and biogenesis;0.0426105440206888!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0426105440206888!GO:0031274;positive regulation of pseudopodium formation;0.0426105440206888!GO:0008047;enzyme activator activity;0.0432127474987809!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0437895206600106!GO:0003746;translation elongation factor activity;0.0438492470843718!GO:0006984;ER-nuclear signaling pathway;0.0446643507188224!GO:0005652;nuclear lamina;0.0450534641563506!GO:0003923;GPI-anchor transamidase activity;0.0457246154182854!GO:0016255;attachment of GPI anchor to protein;0.0457246154182854!GO:0042765;GPI-anchor transamidase complex;0.0457246154182854!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0468594435533372!GO:0006376;mRNA splice site selection;0.048023927343021!GO:0000389;nuclear mRNA 3'-splice site recognition;0.048023927343021!GO:0045926;negative regulation of growth;0.0481909724176258!GO:0003690;double-stranded DNA binding;0.0487568667196773!GO:0045893;positive regulation of transcription, DNA-dependent;0.0489305104343007!GO:0000118;histone deacetylase complex;0.0490366496004455!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0490366496004455!GO:0031124;mRNA 3'-end processing;0.0492932686480952!GO:0043624;cellular protein complex disassembly;0.0496585137228113 | |||
|sample_id=11700 | |sample_id=11700 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=umbilical cord | |sample_tissue=umbilical cord | ||
|top_motifs=RXRA_VDR{dimer}:1.72271906635;GLI1..3:1.4701497021;HOX{A5,B5}:1.34442759232;GTF2A1,2:1.25595940557;TAL1_TCF{3,4,12}:1.20093187532;TFAP4:1.15923142498;ATF6:1.15915485743;LHX3,4:1.11792778599;PBX1:1.07047433566;ZNF238:1.05266864026;HAND1,2:1.03779420109;NR5A1,2:1.02118185544;AR:0.913819876528;RXR{A,B,G}:0.896122070975;NANOG:0.881458748263;EBF1:0.870831103668;NR6A1:0.855365744038;IKZF1:0.76268519384;NR3C1:0.749512625872;NR1H4:0.747214686043;GFI1:0.745021858239;ESRRA:0.731195986305;STAT5{A,B}:0.588265667422;POU2F1..3:0.586697708663;ZNF148:0.581978831223;NFY{A,B,C}:0.577723102313;TFCP2:0.562493836479;TEAD1:0.555615324476;GZF1:0.548147770488;ZNF423:0.543790204109;SOX17:0.540953935631;SRF:0.516464165344;GFI1B:0.473893344261;NKX2-3_NKX2-5:0.454381399178;TP53:0.449600062522;NFIX:0.420483660644;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.400159525142;RORA:0.352404912317;TFAP2{A,C}:0.351053558202;KLF4:0.349888589743;ZBTB6:0.339050742566;HNF4A_NR2F1,2:0.337035190743;TLX1..3_NFIC{dimer}:0.331019278694;CDC5L:0.291210861691;NANOG{mouse}:0.288658676671;TOPORS:0.281670143205;HES1:0.256338023884;ZIC1..3:0.242072417203;TBP:0.230437632706;SPZ1:0.227225339853;HLF:0.226243006097;ESR1:0.222869298235;UFEwm:0.220802770808;RREB1:0.213520150131;YY1:0.191917984158;HNF1A:0.183101719314;EN1,2:0.177416501554;NFE2L2:0.17519696568;REST:0.170599423925;ALX4:0.168093939811;PRRX1,2:0.13730760944;TBX4,5:0.104995657433;SMAD1..7,9:0.102401599621;XCPE1{core}:0.098756770372;CEBPA,B_DDIT3:0.0877871947593;LEF1_TCF7_TCF7L1,2:0.0785425281739;CRX:0.071646917388;PAX3,7:0.0642398240907;NFE2:0.0599644627012;MAFB:0.059214812143;MYB:0.0537712947415;PATZ1:0.0144310236284;GTF2I:0.00361463367025;E2F1..5:0.00109736249727;GATA6:-0.0106319693806;PPARG:-0.0165530052249;ZNF384:-0.0267441388089;POU3F1..4:-0.0402069027106;BACH2:-0.0481453540423;RFX1:-0.0534778241695;NFATC1..3:-0.0568744339574;SOX5:-0.0574810970425;FOS_FOS{B,L1}_JUN{B,D}:-0.0628884264052;HOX{A6,A7,B6,B7}:-0.0910612433789;SOX{8,9,10}:-0.0952884843795;PAX1,9:-0.104850656817;ZNF143:-0.115591088224;HIC1:-0.116592013238;HSF1,2:-0.121237683365;PAX5:-0.12488674813;XBP1:-0.138181474561;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.142659024249;RUNX1..3:-0.146471954954;MYBL2:-0.154463304296;POU5F1:-0.160319179221;MTF1:-0.165150437525;HOXA9_MEIS1:-0.183778665798;NKX3-1:-0.192547814699;bHLH_family:-0.19488833996;FOSL2:-0.195995629432;MZF1:-0.203426064468;DBP:-0.205875069196;NFKB1_REL_RELA:-0.206264325867;NKX2-2,8:-0.206538863879;SP1:-0.2215500725;POU1F1:-0.22320079815;ONECUT1,2:-0.224083045047;PITX1..3:-0.23176446941;ADNP_IRX_SIX_ZHX:-0.250495869185;MEF2{A,B,C,D}:-0.254059361017;HOX{A4,D4}:-0.262316201342;LMO2:-0.292665969987;STAT2,4,6:-0.298898401818;NFE2L1:-0.311004406081;PAX8:-0.312287884996;ELK1,4_GABP{A,B1}:-0.318460603355;FOXM1:-0.320738713586;FOXL1:-0.336043555423;T:-0.342211184828;ETS1,2:-0.384825942381;FOX{F1,F2,J1}:-0.386675723204;OCT4_SOX2{dimer}:-0.392331288549;CUX2:-0.401524064005;HBP1_HMGB_SSRP1_UBTF:-0.410726982932;GATA4:-0.416146264519;PAX6:-0.42144127356;NHLH1,2:-0.434800931319;PRDM1:-0.441089475934;SPIB:-0.446111780513;TEF:-0.446720839451;STAT1,3:-0.45199641715;ELF1,2,4:-0.454308359082;SNAI1..3:-0.455385933631;MAZ:-0.457694475712;CDX1,2,4:-0.497252154935;AHR_ARNT_ARNT2:-0.497926385189;TFAP2B:-0.498689887468;FOXP3:-0.50573491808;NRF1:-0.508182297229;AIRE:-0.513421320735;FOXD3:-0.520370646705;ARID5B:-0.52672112223;FOXA2:-0.543930921356;HMX1:-0.550505504168;TFDP1:-0.557874265237;MTE{core}:-0.580453262176;SOX2:-0.584576426961;NKX3-2:-0.613636001652;RFX2..5_RFXANK_RFXAP:-0.62821708365;ATF2:-0.658415597389;EVI1:-0.673658917477;MED-1{core}:-0.682598446604;MYFfamily:-0.684917805577;TLX2:-0.689559319464;FOXQ1:-0.691117501982;GCM1,2:-0.724704317423;HMGA1,2:-0.743010997938;DMAP1_NCOR{1,2}_SMARC:-0.743797368474;FOX{I1,J2}:-0.769386684864;JUN:-0.784385109974;EP300:-0.785240597128;BREu{core}:-0.796299463692;SPI1:-0.797566328242;POU6F1:-0.808198811715;MYOD1:-0.812668538174;ZEB1:-0.827979696462;BPTF:-0.837294773652;NKX6-1,2:-0.878230741687;IRF7:-0.888323789776;IRF1,2:-0.890844309889;NFIL3:-0.897758344805;ATF5_CREB3:-0.917524007546;PAX2:-0.923332557131;VSX1,2:-0.924570826875;ATF4:-0.952996959282;EGR1..3:-0.97258448549;CREB1:-0.982859412714;TGIF1:-0.988472968265;FOX{D1,D2}:-1.04991027276;PDX1:-1.05337071618;ZFP161:-1.08139957198;HIF1A:-1.09730041613;SREBF1,2:-1.11345426463;PAX4:-1.14415496389;FOXP1:-1.19372337298;ALX1:-1.21715862628;NKX2-1,4:-1.30501056332;RBPJ:-1.38022320743;ZBTB16:-1.44516473585;IKZF2:-1.53338119164;FOXO1,3,4:-1.71218786855;FOXN1:-1.97721513095 | |top_motifs=RXRA_VDR{dimer}:1.72271906635;GLI1..3:1.4701497021;HOX{A5,B5}:1.34442759232;GTF2A1,2:1.25595940557;TAL1_TCF{3,4,12}:1.20093187532;TFAP4:1.15923142498;ATF6:1.15915485743;LHX3,4:1.11792778599;PBX1:1.07047433566;ZNF238:1.05266864026;HAND1,2:1.03779420109;NR5A1,2:1.02118185544;AR:0.913819876528;RXR{A,B,G}:0.896122070975;NANOG:0.881458748263;EBF1:0.870831103668;NR6A1:0.855365744038;IKZF1:0.76268519384;NR3C1:0.749512625872;NR1H4:0.747214686043;GFI1:0.745021858239;ESRRA:0.731195986305;STAT5{A,B}:0.588265667422;POU2F1..3:0.586697708663;ZNF148:0.581978831223;NFY{A,B,C}:0.577723102313;TFCP2:0.562493836479;TEAD1:0.555615324476;GZF1:0.548147770488;ZNF423:0.543790204109;SOX17:0.540953935631;SRF:0.516464165344;GFI1B:0.473893344261;NKX2-3_NKX2-5:0.454381399178;TP53:0.449600062522;NFIX:0.420483660644;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.400159525142;RORA:0.352404912317;TFAP2{A,C}:0.351053558202;KLF4:0.349888589743;ZBTB6:0.339050742566;HNF4A_NR2F1,2:0.337035190743;TLX1..3_NFIC{dimer}:0.331019278694;CDC5L:0.291210861691;NANOG{mouse}:0.288658676671;TOPORS:0.281670143205;HES1:0.256338023884;ZIC1..3:0.242072417203;TBP:0.230437632706;SPZ1:0.227225339853;HLF:0.226243006097;ESR1:0.222869298235;UFEwm:0.220802770808;RREB1:0.213520150131;YY1:0.191917984158;HNF1A:0.183101719314;EN1,2:0.177416501554;NFE2L2:0.17519696568;REST:0.170599423925;ALX4:0.168093939811;PRRX1,2:0.13730760944;TBX4,5:0.104995657433;SMAD1..7,9:0.102401599621;XCPE1{core}:0.098756770372;CEBPA,B_DDIT3:0.0877871947593;LEF1_TCF7_TCF7L1,2:0.0785425281739;CRX:0.071646917388;PAX3,7:0.0642398240907;NFE2:0.0599644627012;MAFB:0.059214812143;MYB:0.0537712947415;PATZ1:0.0144310236284;GTF2I:0.00361463367025;E2F1..5:0.00109736249727;GATA6:-0.0106319693806;PPARG:-0.0165530052249;ZNF384:-0.0267441388089;POU3F1..4:-0.0402069027106;BACH2:-0.0481453540423;RFX1:-0.0534778241695;NFATC1..3:-0.0568744339574;SOX5:-0.0574810970425;FOS_FOS{B,L1}_JUN{B,D}:-0.0628884264052;HOX{A6,A7,B6,B7}:-0.0910612433789;SOX{8,9,10}:-0.0952884843795;PAX1,9:-0.104850656817;ZNF143:-0.115591088224;HIC1:-0.116592013238;HSF1,2:-0.121237683365;PAX5:-0.12488674813;XBP1:-0.138181474561;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.142659024249;RUNX1..3:-0.146471954954;MYBL2:-0.154463304296;POU5F1:-0.160319179221;MTF1:-0.165150437525;HOXA9_MEIS1:-0.183778665798;NKX3-1:-0.192547814699;bHLH_family:-0.19488833996;FOSL2:-0.195995629432;MZF1:-0.203426064468;DBP:-0.205875069196;NFKB1_REL_RELA:-0.206264325867;NKX2-2,8:-0.206538863879;SP1:-0.2215500725;POU1F1:-0.22320079815;ONECUT1,2:-0.224083045047;PITX1..3:-0.23176446941;ADNP_IRX_SIX_ZHX:-0.250495869185;MEF2{A,B,C,D}:-0.254059361017;HOX{A4,D4}:-0.262316201342;LMO2:-0.292665969987;STAT2,4,6:-0.298898401818;NFE2L1:-0.311004406081;PAX8:-0.312287884996;ELK1,4_GABP{A,B1}:-0.318460603355;FOXM1:-0.320738713586;FOXL1:-0.336043555423;T:-0.342211184828;ETS1,2:-0.384825942381;FOX{F1,F2,J1}:-0.386675723204;OCT4_SOX2{dimer}:-0.392331288549;CUX2:-0.401524064005;HBP1_HMGB_SSRP1_UBTF:-0.410726982932;GATA4:-0.416146264519;PAX6:-0.42144127356;NHLH1,2:-0.434800931319;PRDM1:-0.441089475934;SPIB:-0.446111780513;TEF:-0.446720839451;STAT1,3:-0.45199641715;ELF1,2,4:-0.454308359082;SNAI1..3:-0.455385933631;MAZ:-0.457694475712;CDX1,2,4:-0.497252154935;AHR_ARNT_ARNT2:-0.497926385189;TFAP2B:-0.498689887468;FOXP3:-0.50573491808;NRF1:-0.508182297229;AIRE:-0.513421320735;FOXD3:-0.520370646705;ARID5B:-0.52672112223;FOXA2:-0.543930921356;HMX1:-0.550505504168;TFDP1:-0.557874265237;MTE{core}:-0.580453262176;SOX2:-0.584576426961;NKX3-2:-0.613636001652;RFX2..5_RFXANK_RFXAP:-0.62821708365;ATF2:-0.658415597389;EVI1:-0.673658917477;MED-1{core}:-0.682598446604;MYFfamily:-0.684917805577;TLX2:-0.689559319464;FOXQ1:-0.691117501982;GCM1,2:-0.724704317423;HMGA1,2:-0.743010997938;DMAP1_NCOR{1,2}_SMARC:-0.743797368474;FOX{I1,J2}:-0.769386684864;JUN:-0.784385109974;EP300:-0.785240597128;BREu{core}:-0.796299463692;SPI1:-0.797566328242;POU6F1:-0.808198811715;MYOD1:-0.812668538174;ZEB1:-0.827979696462;BPTF:-0.837294773652;NKX6-1,2:-0.878230741687;IRF7:-0.888323789776;IRF1,2:-0.890844309889;NFIL3:-0.897758344805;ATF5_CREB3:-0.917524007546;PAX2:-0.923332557131;VSX1,2:-0.924570826875;ATF4:-0.952996959282;EGR1..3:-0.97258448549;CREB1:-0.982859412714;TGIF1:-0.988472968265;FOX{D1,D2}:-1.04991027276;PDX1:-1.05337071618;ZFP161:-1.08139957198;HIF1A:-1.09730041613;SREBF1,2:-1.11345426463;PAX4:-1.14415496389;FOXP1:-1.19372337298;ALX1:-1.21715862628;NKX2-1,4:-1.30501056332;RBPJ:-1.38022320743;ZBTB16:-1.44516473585;IKZF2:-1.53338119164;FOXO1,3,4:-1.71218786855;FOXN1:-1.97721513095 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11700-123A8;search_select_hide=table117:FF:11700-123A8 | |||
}} | }} | ||
Latest revision as of 18:15, 4 June 2020
| Name: | Mesenchymal Stem Cells - umbilical, donor3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12127 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12127
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12127
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0839 |
| 10 | 10 | 0.398 |
| 100 | 100 | 0.28 |
| 101 | 101 | 0.589 |
| 102 | 102 | 0.647 |
| 103 | 103 | 0.11 |
| 104 | 104 | 0.425 |
| 105 | 105 | 0.246 |
| 106 | 106 | 0.19 |
| 107 | 107 | 0.0619 |
| 108 | 108 | 0.574 |
| 109 | 109 | 0.0193 |
| 11 | 11 | 0.0331 |
| 110 | 110 | 0.0671 |
| 111 | 111 | 0.389 |
| 112 | 112 | 0.974 |
| 113 | 113 | 0.793 |
| 114 | 114 | 0.247 |
| 115 | 115 | 0.819 |
| 116 | 116 | 0.0652 |
| 117 | 117 | 0.233 |
| 118 | 118 | 0.397 |
| 119 | 119 | 0.212 |
| 12 | 12 | 0.505 |
| 120 | 120 | 0.2 |
| 121 | 121 | 0.809 |
| 122 | 122 | 0.99 |
| 123 | 123 | 0.315 |
| 124 | 124 | 0.535 |
| 125 | 125 | 0.397 |
| 126 | 126 | 0.38 |
| 127 | 127 | 0.0346 |
| 128 | 128 | 0.188 |
| 129 | 129 | 0.404 |
| 13 | 13 | 0.215 |
| 130 | 130 | 0.238 |
| 131 | 131 | 0.99 |
| 132 | 132 | 0.366 |
| 133 | 133 | 0.409 |
| 134 | 134 | 0.322 |
| 135 | 135 | 0.572 |
| 136 | 136 | 0.778 |
| 137 | 137 | 0.093 |
| 138 | 138 | 0.235 |
| 139 | 139 | 0.261 |
| 14 | 14 | 0.94 |
| 140 | 140 | 0.591 |
| 141 | 141 | 0.507 |
| 142 | 142 | 0.107 |
| 143 | 143 | 0.132 |
| 144 | 144 | 0.597 |
| 145 | 145 | 0.442 |
| 146 | 146 | 0.186 |
| 147 | 147 | 0.165 |
| 148 | 148 | 0.506 |
| 149 | 149 | 0.128 |
| 15 | 15 | 0.461 |
| 150 | 150 | 0.454 |
| 151 | 151 | 0.331 |
| 152 | 152 | 0.142 |
| 153 | 153 | 0.353 |
| 154 | 154 | 0.541 |
| 155 | 155 | 0.284 |
| 156 | 156 | 0.373 |
| 157 | 157 | 0.618 |
| 158 | 158 | 0.401 |
| 159 | 159 | 0.755 |
| 16 | 16 | 0.11 |
| 160 | 160 | 0.0201 |
| 161 | 161 | 0.17 |
| 162 | 162 | 0.0993 |
| 163 | 163 | 0.509 |
| 164 | 164 | 0.632 |
| 165 | 165 | 0.446 |
| 166 | 166 | 0.388 |
| 167 | 167 | 0.925 |
| 168 | 168 | 0.68 |
| 169 | 169 | 0.0299 |
| 17 | 17 | 0.0584 |
| 18 | 18 | 0.177 |
| 19 | 19 | 0.0926 |
| 2 | 2 | 0.413 |
| 20 | 20 | 0.67 |
| 21 | 21 | 0.644 |
| 22 | 22 | 0.0838 |
| 23 | 23 | 0.365 |
| 24 | 24 | 0.686 |
| 25 | 25 | 0.832 |
| 26 | 26 | 0.0121 |
| 27 | 27 | 0.222 |
| 28 | 28 | 0.335 |
| 29 | 29 | 0.353 |
| 3 | 3 | 0.261 |
| 30 | 30 | 0.393 |
| 31 | 31 | 0.378 |
| 32 | 32 | 5.47847e-9 |
| 33 | 33 | 0.523 |
| 34 | 34 | 0.166 |
| 35 | 35 | 0.618 |
| 36 | 36 | 0.149 |
| 37 | 37 | 0.0767 |
| 38 | 38 | 0.336 |
| 39 | 39 | 0.331 |
| 4 | 4 | 0.595 |
| 40 | 40 | 0.013 |
| 41 | 41 | 0.641 |
| 42 | 42 | 0.712 |
| 43 | 43 | 0.102 |
| 44 | 44 | 0.388 |
| 45 | 45 | 0.621 |
| 46 | 46 | 0.0481 |
| 47 | 47 | 0.12 |
| 48 | 48 | 0.0894 |
| 49 | 49 | 0.139 |
| 5 | 5 | 0.844 |
| 50 | 50 | 0.302 |
| 51 | 51 | 0.115 |
| 52 | 52 | 0.978 |
| 53 | 53 | 0.808 |
| 54 | 54 | 0.384 |
| 55 | 55 | 0.332 |
| 56 | 56 | 0.192 |
| 57 | 57 | 0.183 |
| 58 | 58 | 0.957 |
| 59 | 59 | 0.068 |
| 6 | 6 | 0.747 |
| 60 | 60 | 0.576 |
| 61 | 61 | 0.281 |
| 62 | 62 | 0.719 |
| 63 | 63 | 0.137 |
| 64 | 64 | 0.119 |
| 65 | 65 | 0.0468 |
| 66 | 66 | 0.258 |
| 67 | 67 | 0.989 |
| 68 | 68 | 0.14 |
| 69 | 69 | 0.182 |
| 7 | 7 | 0.605 |
| 70 | 70 | 0.922 |
| 71 | 71 | 0.051 |
| 72 | 72 | 0.955 |
| 73 | 73 | 0.104 |
| 74 | 74 | 0.877 |
| 75 | 75 | 0.26 |
| 76 | 76 | 0.436 |
| 77 | 77 | 0.0427 |
| 78 | 78 | 0.785 |
| 79 | 79 | 0.085 |
| 8 | 8 | 0.0394 |
| 80 | 80 | 0.886 |
| 81 | 81 | 0.461 |
| 82 | 82 | 0.282 |
| 83 | 83 | 0.946 |
| 84 | 84 | 0.352 |
| 85 | 85 | 0.211 |
| 86 | 86 | 0.946 |
| 87 | 87 | 0.341 |
| 88 | 88 | 0.294 |
| 89 | 89 | 0.24 |
| 9 | 9 | 0.368 |
| 90 | 90 | 0.948 |
| 91 | 91 | 0.264 |
| 92 | 92 | 0.941 |
| 93 | 93 | 0.262 |
| 94 | 94 | 0.319 |
| 95 | 95 | 0.209 |
| 96 | 96 | 0.589 |
| 97 | 97 | 0.643 |
| 98 | 98 | 0.357 |
| 99 | 99 | 0.00203 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12127
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000094 human mesenchymal stem cell of umbilical cord-Sciencell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)
UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000094 (human mesenchymal stem cell of umbilical cord-Sciencell sample)
0000001 (sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
