FF:10855-111F9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005214 | |||
|accession_numbers=CAGE;DRX007944;DRR008816;DRZ000241;DRZ001626;DRZ011591;DRZ012976 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077 | ||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102424 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0102424 | |fonse_cell_line=FF:0102424 | ||
|fonse_cell_line_closure=FF:0102424 | |fonse_cell_line_closure=FF:0102424 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10855-111F9 | |id=FF:10855-111F9 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102424 | ||
|is_obsolete= | |||
|library_id=CNhs13072 | |||
|library_id_phase_based=2:CNhs13072 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10855 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10855 | |||
|name=mesothelioma cell line:Mero-84 | |name=mesothelioma cell line:Mero-84 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13072,LSID1000,release012,COMPLETED | |profile_hcage=CNhs13072,LSID1000,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0.116873766533297,0.0584368832666485,0,0,0,0,0.188999483403139,0,0.334150292342418,0.321430731854119,0,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,-0.0364492438151307,0,0,0,0,0,0.186789552067952,0,0,-0.0160828232455653,0,0,0,0,0,0,0,0,0,0,0,0,0.113120349632835,0.0268973301462423,0,0,0,0,0,0,0,0.222594660713167,0,0,0,0,0,0,0,0.0198814052906918,0,0,0.0195301393202,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.147240254377244,0.142373724168005,0,0,0.0584269397214717,0.0775032836351085,0,0,0,0.28474744833601,-0.0980353512377064,0.089159123037068,0,0,0,0.116873766533297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0782851628223015,0,0,0,0.250825417146498,0.404847272001432,0,0,0.00990734107241878,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0.28474744833601,0.116873766533297,0,0,0,0.28474744833601,0,0,0,0,-0.247178875285564,0.0584368832666485,0.299760405812003,-0.143515142523472,0,0,-0.322843129251573,0,0,0,0,0,0,0,0.116873766533297,0,-0.128119866952565,0,1.43154773225158,0,0,0,0,-0.0186252810838506,-0.0966003155824133,0,-0.069822103491513,0.472036722400902,0,0,0,0,-0.009044614956521,0,-0.120879483793741,-0.0827201683234173,-0.136497324683588,-0.129162392754998,-0.055712496781182,0,0,0,-0.492355611757634,0.213540928569696,0,0,0.382526974692386,-0.181349618560659,0,0,-0.391044581551635,0,-0.692500168301733,0.0392080153525806,0,0.0365238547794449,0,0,0,0,0,0,0,0,0,0,0,0.628925140225173,-0.042241148342959,0,0.208871915315994,0.773846624564011,0,0.149940818706253,0,0,-0.373286155956567,0.0151154718511491,-0.0818417114745265,0.516035565012974,0,-0.185515960476616,-0.0987259020443396,0.277819451361891,0.119978511522862,-0.0305280828378416,-0.189981719549847,0.0325651000338363,-0.147240254377244,-0.143134345694811,-0.0656989016062434,-0.20048914488329,0.0968196818063814,0.0660650390574975,-0.115831484971279,0,0,0,-0.480396338901419,0,0.0264830146964705,0.546579891261435,0.0170600469278935,0.127861148426105,-0.188821459314451,0.0799128377732135,0.0466228698903217,0.0773412380766264,-0.248564537580601,0,-0.246913568158937,0.0462931528176315,0.116873766533297,0,0.00477140109423102,0.00994182411023548,-0.115917858744347,0,-0.367103695277684,0.216403187258642,0,0.10564369703809,-0.255159024888152,0,0,-0.0383962473931417,0,0,0,0,0,0.226088296085917,0.0720202815057661,0.0518918867804651,0,0.085738063800506,0,0.18052984103744,0,-0.0700980488341147,0.237385513265253,-0.181200385827995,-0.0893291536608447,0,0.142064448010151,0.0540024510837054,0.146120650549988,0.155006567270217,0.0584269397214717,-0.118959509239799,-0.359063138260801,-0.256484544322751,0.0852420986922587,0.330964951082513,0.96072063155129,-0.0417723708066839,-0.428272102842454,0.116355799596033,0.0432629802903326,-0.120170461153832,0,-0.0534007292866787,0,-0.11388887813695,0,0.156728475071338,0.185740684985757,-0.230417459264692,-0.326970038674208,0,0.290888341319501,0.792294182430779,0.013641465620396,0.200679059948764,-0.0417719209484523,0.455272647675926,-0.0334933168013424,-0.157314983034312,0.180677453520582,-0.138989456679195,0,-0.581208243073663,0,0,0.186905336017896,-0.235476037764389,0,0.0240572443636577,0.246681267474694,-0.198697698972985,-0.115971073434934,0.349317513489525,0,-0.0682989653307701,0,0,0.648960152173632,-0.0476229483497312,0.391535156390006,-0.0444544261707617,-0.0525627030684395,0.301569360471708,0,0,0.322380548469157,0,0.05743017452277,0,0,-0.047122125487669,0.000245653543164151,0,0,0.116873766533297,0,0,0,0,0,0,0,0,-0.0511402291891796,-0.237959563683151,0,0.00246156623968297,0,0,0,0,0,0,0.116873766533297,0,0.685685399859056,0.111675547071659,-0.00614364914312333,0,0,0,0,-0.0988496360201777,0.00563535322127021,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0.0584368832666485,0.15114145826233,0.314678244047352,0,0,0,0.178318246074136,0,0,0,0,-0.182265728316213,0,0,0.37938830696226,0,-0.186585582582165,0.0352918869864555,0,-0.131100505519611,0.000570474941865129,0.481606193905564,0,0,-0.144473365256591,0,0.0997369662376595,-0.065707238447054,0,0,0,0,0,0,0,0,0,-0.0974407458664587,0.116873766533297,0,0,0,0,0,0,0,0,0,0,-0.317541346447618,0.0246497098747865,0,0,0,0,0,0,0,-0.0241060230789031,0.035261722451861,0.0584368832666485,0,0.0164098786445557,0,0,0.116873766533297,0,0,0.0689550438150281,0,0,0,0,0,0.0198814052906918,0,0,0,0.116873766533297,0.642861463708238,0,0,0.334150292342418,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,-0.0064453195021508,0.548033929475787,0,0,0,0,0,0,0,0.00991415012991942,0,0,0,0,-0.113884373708977,0,0,0,0.35047626288677,0,0.188999483403139,0,0,0,0.0584368832666485,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174658756744763,0,0,0,0.174921930585087,0,-0.0783356006569158,0.116873766533297,0,0,-0.057969595888279,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00293104421826635,0,0,0,0,0,0,0,0.186789552067952,0,0,-0.0335959265338777,0,0,0,0,0,0,-0.087166233222056,0.62533614549652,-0.0860191965171747,0,0,0,0.00405131078419347,0,0,0.0331005885854472,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0364492438151307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.024425519991232,0,0,0.116873766533297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128853447047356,0,0,0,-0.00421431434104971,0,0,0,0,0,0,0,0,0.208871915315994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,0.17197250571156,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.124495283085967,0,0,0.405518342222309,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0268973301462423,0,0,0,0,0.161234804655075,0,0,0,0,0,0,0,0.0170074598561438,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41900600162746,0,0,0.0519815692830131,0,0,0,0,0,0,0,0,0,0,0,0,0.287997334339399,0,0,0,0,0,0,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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=61.4 | |rna_weight_ug=61.4 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=9100107 | |sample_cell_catalog=9100107 | ||
|sample_cell_line=Mero-84 | |sample_cell_line=Mero-84 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.54036811727085e-222!GO:0005737;cytoplasm;3.49567610496755e-190!GO:0043226;organelle;4.07471788495462e-181!GO:0043229;intracellular organelle;1.28089567108086e-180!GO:0043227;membrane-bound organelle;2.03166321461589e-173!GO:0043231;intracellular membrane-bound organelle;2.03166321461589e-173!GO:0044422;organelle part;2.9719081988119e-151!GO:0044446;intracellular organelle part;2.09403369401109e-149!GO:0044444;cytoplasmic part;1.20656941444216e-138!GO:0032991;macromolecular complex;1.36213980573997e-100!GO:0030529;ribonucleoprotein complex;1.43346654946998e-88!GO:0005515;protein binding;1.33843830203661e-83!GO:0044237;cellular metabolic process;3.68765869326815e-73!GO:0044238;primary metabolic process;1.52742848255569e-72!GO:0043233;organelle lumen;1.05295382188596e-70!GO:0031974;membrane-enclosed lumen;1.05295382188596e-70!GO:0005739;mitochondrion;1.24582766539118e-70!GO:0044428;nuclear part;8.18140414824362e-70!GO:0043170;macromolecule metabolic process;7.54860976133702e-67!GO:0003723;RNA binding;1.4878543681562e-65!GO:0005634;nucleus;3.39042272990847e-60!GO:0005840;ribosome;2.4829688321223e-54!GO:0031090;organelle membrane;2.41006591230068e-52!GO:0016043;cellular component organization and biogenesis;4.78619790245811e-52!GO:0043234;protein complex;3.83359144910289e-50!GO:0006412;translation;2.84222064242435e-49!GO:0003735;structural constituent of ribosome;3.13959606396113e-47!GO:0019538;protein metabolic process;4.39206481679774e-47!GO:0009058;biosynthetic process;4.81515277317061e-47!GO:0006396;RNA processing;1.48912772031621e-45!GO:0044429;mitochondrial part;1.97549382585555e-45!GO:0009059;macromolecule biosynthetic process;8.96776374771711e-44!GO:0044249;cellular biosynthetic process;1.91665257697786e-42!GO:0031967;organelle envelope;4.44037045760213e-42!GO:0031975;envelope;5.15421362532633e-42!GO:0044260;cellular macromolecule metabolic process;1.07906635411506e-41!GO:0044267;cellular protein metabolic process;3.60329098256412e-41!GO:0033279;ribosomal subunit;4.48462005102805e-41!GO:0031981;nuclear lumen;3.02675935865371e-40!GO:0033036;macromolecule localization;1.01641092505817e-39!GO:0015031;protein transport;2.59691783850915e-39!GO:0043228;non-membrane-bound organelle;3.04084480215878e-39!GO:0043232;intracellular non-membrane-bound organelle;3.04084480215878e-39!GO:0005829;cytosol;2.14644091493781e-38!GO:0008104;protein localization;1.94827339638336e-36!GO:0045184;establishment of protein localization;2.30804125999199e-36!GO:0016071;mRNA metabolic process;6.47920529685813e-34!GO:0065003;macromolecular complex assembly;1.54703439336057e-33!GO:0046907;intracellular transport;1.54703439336057e-33!GO:0043283;biopolymer metabolic process;9.78577792476595e-33!GO:0008380;RNA splicing;2.34434965411707e-32!GO:0006996;organelle organization and biogenesis;1.49948130660038e-31!GO:0022607;cellular component assembly;5.64533351480294e-31!GO:0006397;mRNA processing;1.78521570032384e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.20956664036525e-29!GO:0005740;mitochondrial envelope;4.13093604784672e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.37322959983388e-29!GO:0006259;DNA metabolic process;2.04486125697773e-28!GO:0010467;gene expression;1.8882101648639e-27!GO:0006886;intracellular protein transport;4.20821712420512e-27!GO:0031966;mitochondrial membrane;4.20821712420512e-27!GO:0019866;organelle inner membrane;6.03131796098717e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.98251841081675e-26!GO:0005743;mitochondrial inner membrane;9.77177875411587e-25!GO:0044445;cytosolic part;1.78222494485341e-24!GO:0005681;spliceosome;2.4376025486615e-24!GO:0005654;nucleoplasm;1.31670706242858e-23!GO:0007049;cell cycle;1.38766092884332e-23!GO:0012505;endomembrane system;6.81394903848934e-23!GO:0051649;establishment of cellular localization;1.58545372075906e-22!GO:0006119;oxidative phosphorylation;2.17311901630811e-22!GO:0015934;large ribosomal subunit;3.11521026862388e-22!GO:0051641;cellular localization;4.27204748251703e-22!GO:0000166;nucleotide binding;8.14184120709807e-22!GO:0005783;endoplasmic reticulum;3.5646884513423e-20!GO:0016462;pyrophosphatase activity;5.27694837149789e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.84872141754402e-20!GO:0015935;small ribosomal subunit;6.84872141754402e-20!GO:0044455;mitochondrial membrane part;9.7570147301345e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;9.84793146270194e-20!GO:0031980;mitochondrial lumen;9.84793146270194e-20!GO:0005759;mitochondrial matrix;9.84793146270194e-20!GO:0017111;nucleoside-triphosphatase activity;2.31588042281909e-19!GO:0044451;nucleoplasm part;2.7329004448106e-19!GO:0005730;nucleolus;1.4375283156939e-18!GO:0006457;protein folding;1.56818871260551e-18!GO:0022402;cell cycle process;4.65798484112412e-18!GO:0000278;mitotic cell cycle;1.36646730609084e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.37159172549821e-17!GO:0048770;pigment granule;4.21110369956485e-17!GO:0042470;melanosome;4.21110369956485e-17!GO:0005746;mitochondrial respiratory chain;4.38884520351019e-17!GO:0044432;endoplasmic reticulum part;8.03832844654515e-17!GO:0016874;ligase activity;1.33702662812691e-16!GO:0022618;protein-RNA complex assembly;1.64660720476935e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.91748066601433e-16!GO:0005761;mitochondrial ribosome;3.18404898504109e-16!GO:0000313;organellar ribosome;3.18404898504109e-16!GO:0006974;response to DNA damage stimulus;5.28556828601076e-16!GO:0005794;Golgi apparatus;6.86331326122063e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.19178989255348e-15!GO:0003954;NADH dehydrogenase activity;1.19178989255348e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.19178989255348e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.60987560131988e-15!GO:0044265;cellular macromolecule catabolic process;4.43267675661624e-15!GO:0043285;biopolymer catabolic process;1.1784064237729e-14!GO:0032553;ribonucleotide binding;1.34736336838171e-14!GO:0032555;purine ribonucleotide binding;1.34736336838171e-14!GO:0006605;protein targeting;2.43007514877969e-14!GO:0005694;chromosome;2.46942244531791e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.06811427195927e-14!GO:0017076;purine nucleotide binding;3.51899556566483e-14!GO:0051082;unfolded protein binding;3.932271700332e-14!GO:0008135;translation factor activity, nucleic acid binding;4.38296794770229e-14!GO:0051186;cofactor metabolic process;4.94984329622303e-14!GO:0009057;macromolecule catabolic process;7.00935046470215e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;1.14556107804108e-13!GO:0000375;RNA splicing, via transesterification reactions;1.14556107804108e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.14556107804108e-13!GO:0044427;chromosomal part;1.22860234059528e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.32671565447164e-13!GO:0042773;ATP synthesis coupled electron transport;1.32671565447164e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.3642091997773e-13!GO:0045271;respiratory chain complex I;1.3642091997773e-13!GO:0005747;mitochondrial respiratory chain complex I;1.3642091997773e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.68472102367882e-13!GO:0006281;DNA repair;2.18813227750948e-13!GO:0003676;nucleic acid binding;2.19539059978265e-13!GO:0022403;cell cycle phase;2.23084167459273e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.35516561890486e-13!GO:0005635;nuclear envelope;2.9573149154124e-13!GO:0019941;modification-dependent protein catabolic process;3.22257796600931e-13!GO:0043632;modification-dependent macromolecule catabolic process;3.22257796600931e-13!GO:0006511;ubiquitin-dependent protein catabolic process;3.32413558413839e-13!GO:0044257;cellular protein catabolic process;3.32413558413839e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.08042079243873e-13!GO:0042254;ribosome biogenesis and assembly;4.59058237596492e-13!GO:0031965;nuclear membrane;7.38935738450161e-13!GO:0048193;Golgi vesicle transport;8.24292871250296e-13!GO:0044453;nuclear membrane part;8.44675477647958e-13!GO:0005524;ATP binding;1.40909093359965e-12!GO:0009719;response to endogenous stimulus;1.48799462536262e-12!GO:0030163;protein catabolic process;1.55830379904585e-12!GO:0006512;ubiquitin cycle;1.64186444631874e-12!GO:0000087;M phase of mitotic cell cycle;1.64569297977829e-12!GO:0007067;mitosis;2.07062229887448e-12!GO:0032559;adenyl ribonucleotide binding;2.14739403796257e-12!GO:0044248;cellular catabolic process;2.22092442818858e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.82988012833901e-12!GO:0012501;programmed cell death;3.14119498141308e-12!GO:0006260;DNA replication;4.70256927258899e-12!GO:0006915;apoptosis;5.05551045977759e-12!GO:0042623;ATPase activity, coupled;6.42502662501988e-12!GO:0030554;adenyl nucleotide binding;8.19041238581696e-12!GO:0005789;endoplasmic reticulum membrane;8.80356372903293e-12!GO:0006913;nucleocytoplasmic transport;1.43326181617874e-11!GO:0051301;cell division;1.55114638645254e-11!GO:0051276;chromosome organization and biogenesis;1.60994213888571e-11!GO:0008134;transcription factor binding;1.95381963306357e-11!GO:0009055;electron carrier activity;2.66695908196594e-11!GO:0016887;ATPase activity;3.71214804760089e-11!GO:0051169;nuclear transport;3.79562874665901e-11!GO:0043412;biopolymer modification;5.08693889349031e-11!GO:0016192;vesicle-mediated transport;5.23390893080998e-11!GO:0008219;cell death;6.27410623952116e-11!GO:0016265;death;6.27410623952116e-11!GO:0006399;tRNA metabolic process;1.2582335038126e-10!GO:0006732;coenzyme metabolic process;1.26344716155676e-10!GO:0000279;M phase;2.58320804638026e-10!GO:0005643;nuclear pore;3.19774007117337e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.23087796447571e-10!GO:0006461;protein complex assembly;5.22215516525696e-10!GO:0065004;protein-DNA complex assembly;5.87846802067063e-10!GO:0006413;translational initiation;6.08129814592601e-10!GO:0003743;translation initiation factor activity;7.00294589047343e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;9.56476848276748e-10!GO:0065002;intracellular protein transport across a membrane;1.87650265604394e-09!GO:0006464;protein modification process;2.00939556076349e-09!GO:0000785;chromatin;2.24063749003203e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.85734185550288e-09!GO:0006323;DNA packaging;3.58807152046422e-09!GO:0008565;protein transporter activity;3.90442674455484e-09!GO:0016070;RNA metabolic process;5.1705811536839e-09!GO:0006364;rRNA processing;5.2066038209319e-09!GO:0006446;regulation of translational initiation;5.73272036808597e-09!GO:0009259;ribonucleotide metabolic process;6.12459377474563e-09!GO:0006366;transcription from RNA polymerase II promoter;6.23479204531517e-09!GO:0000074;regulation of progression through cell cycle;6.59821953055292e-09!GO:0006333;chromatin assembly or disassembly;6.95223707320272e-09!GO:0051726;regulation of cell cycle;7.51655243009437e-09!GO:0016604;nuclear body;7.51655243009437e-09!GO:0006163;purine nucleotide metabolic process;8.89828646022872e-09!GO:0016072;rRNA metabolic process;1.1782535293992e-08!GO:0046930;pore complex;1.22009513843711e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.46163919477076e-08!GO:0017038;protein import;1.56472293352886e-08!GO:0016491;oxidoreductase activity;2.10767394685288e-08!GO:0050657;nucleic acid transport;2.90937398298736e-08!GO:0051236;establishment of RNA localization;2.90937398298736e-08!GO:0050658;RNA transport;2.90937398298736e-08!GO:0009150;purine ribonucleotide metabolic process;2.99162282233152e-08!GO:0006164;purine nucleotide biosynthetic process;3.01351752790474e-08!GO:0005793;ER-Golgi intermediate compartment;3.01351752790474e-08!GO:0006403;RNA localization;3.54847713964946e-08!GO:0009060;aerobic respiration;3.73899888801574e-08!GO:0008026;ATP-dependent helicase activity;3.77889282958663e-08!GO:0015986;ATP synthesis coupled proton transport;4.03733407958998e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.03733407958998e-08!GO:0004386;helicase activity;4.06529240050493e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.54384101695071e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.68469654545694e-08!GO:0009260;ribonucleotide biosynthetic process;5.88552296707362e-08!GO:0042981;regulation of apoptosis;6.4551506209938e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.20993812920845e-08!GO:0004812;aminoacyl-tRNA ligase activity;7.20993812920845e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.20993812920845e-08!GO:0051188;cofactor biosynthetic process;7.6935787233725e-08!GO:0043067;regulation of programmed cell death;8.26561441956775e-08!GO:0019787;small conjugating protein ligase activity;8.27483372123552e-08!GO:0016469;proton-transporting two-sector ATPase complex;8.55809549035828e-08!GO:0008639;small protein conjugating enzyme activity;8.98316853273733e-08!GO:0009152;purine ribonucleotide biosynthetic process;9.73004078118035e-08!GO:0006334;nucleosome assembly;1.17779718016919e-07!GO:0004842;ubiquitin-protein ligase activity;1.34029718946371e-07!GO:0019829;cation-transporting ATPase activity;1.35801773052894e-07!GO:0009056;catabolic process;1.37154504768726e-07!GO:0043038;amino acid activation;1.53928544702405e-07!GO:0006418;tRNA aminoacylation for protein translation;1.53928544702405e-07!GO:0043039;tRNA aminoacylation;1.53928544702405e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.54594030088429e-07!GO:0015630;microtubule cytoskeleton;1.5531058298347e-07!GO:0009141;nucleoside triphosphate metabolic process;1.76717457719892e-07!GO:0048523;negative regulation of cellular process;1.84109310809786e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.97095537640026e-07!GO:0044431;Golgi apparatus part;1.98723066779767e-07!GO:0003712;transcription cofactor activity;1.99384753142719e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.54153764344429e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.54153764344429e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.54153764344429e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.34465318531542e-07!GO:0009144;purine nucleoside triphosphate metabolic process;3.34465318531542e-07!GO:0016779;nucleotidyltransferase activity;3.45469436137661e-07!GO:0005788;endoplasmic reticulum lumen;3.51397508176509e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.51397508176509e-07!GO:0007005;mitochondrion organization and biogenesis;3.96341409310979e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.38063312728576e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.38063312728576e-07!GO:0048475;coated membrane;4.38063312728576e-07!GO:0030117;membrane coat;4.38063312728576e-07!GO:0031497;chromatin assembly;4.38063312728576e-07!GO:0009117;nucleotide metabolic process;5.26165407435144e-07!GO:0006888;ER to Golgi vesicle-mediated transport;5.40989736582447e-07!GO:0043687;post-translational protein modification;5.70304611799452e-07!GO:0045333;cellular respiration;6.81794178767183e-07!GO:0030120;vesicle coat;7.3888240773624e-07!GO:0030662;coated vesicle membrane;7.3888240773624e-07!GO:0006754;ATP biosynthetic process;8.10291991334125e-07!GO:0006753;nucleoside phosphate metabolic process;8.10291991334125e-07!GO:0046034;ATP metabolic process;8.34008199282383e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.63014751018603e-07!GO:0043623;cellular protein complex assembly;1.05265716548415e-06!GO:0004298;threonine endopeptidase activity;1.12294425744854e-06!GO:0051028;mRNA transport;1.17053138693631e-06!GO:0016740;transferase activity;1.6242570775901e-06!GO:0006099;tricarboxylic acid cycle;1.78587066592553e-06!GO:0046356;acetyl-CoA catabolic process;1.78587066592553e-06!GO:0016881;acid-amino acid ligase activity;1.97656655018753e-06!GO:0031988;membrane-bound vesicle;2.378249539343e-06!GO:0003697;single-stranded DNA binding;2.44072260413874e-06!GO:0048519;negative regulation of biological process;2.46360446600924e-06!GO:0000245;spliceosome assembly;2.732422535068e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.80264528761905e-06!GO:0043566;structure-specific DNA binding;3.26529889588108e-06!GO:0009108;coenzyme biosynthetic process;3.31501968674529e-06!GO:0003924;GTPase activity;3.64107666822702e-06!GO:0045259;proton-transporting ATP synthase complex;3.9447012370411e-06!GO:0016607;nuclear speck;4.25600451885074e-06!GO:0051170;nuclear import;4.49202178897334e-06!GO:0045454;cell redox homeostasis;4.84271225510492e-06!GO:0005762;mitochondrial large ribosomal subunit;5.33829776435513e-06!GO:0000315;organellar large ribosomal subunit;5.33829776435513e-06!GO:0051246;regulation of protein metabolic process;5.36470297092568e-06!GO:0006084;acetyl-CoA metabolic process;5.47369781786519e-06!GO:0043069;negative regulation of programmed cell death;5.53481433151478e-06!GO:0003724;RNA helicase activity;6.65489867769625e-06!GO:0005667;transcription factor complex;7.12832280621354e-06!GO:0005819;spindle;7.50669090776222e-06!GO:0051329;interphase of mitotic cell cycle;7.96457576585322e-06!GO:0043066;negative regulation of apoptosis;8.10162512857233e-06!GO:0005768;endosome;8.10162512857233e-06!GO:0006606;protein import into nucleus;8.48478575276615e-06!GO:0016853;isomerase activity;9.05783730839395e-06!GO:0051187;cofactor catabolic process;1.03998245377903e-05!GO:0000139;Golgi membrane;1.07029915305191e-05!GO:0051325;interphase;1.2268899248782e-05!GO:0003899;DNA-directed RNA polymerase activity;1.48870704946175e-05!GO:0008654;phospholipid biosynthetic process;1.91430498031803e-05!GO:0006916;anti-apoptosis;2.23490287503533e-05!GO:0009109;coenzyme catabolic process;2.39815746390063e-05!GO:0032446;protein modification by small protein conjugation;2.39869774460033e-05!GO:0006091;generation of precursor metabolites and energy;2.42999744533515e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;2.5644566355504e-05!GO:0006613;cotranslational protein targeting to membrane;3.01009763263672e-05!GO:0031982;vesicle;3.01009763263672e-05!GO:0051168;nuclear export;3.38724201439033e-05!GO:0016567;protein ubiquitination;3.62619658726683e-05!GO:0000314;organellar small ribosomal subunit;3.80407965310752e-05!GO:0005763;mitochondrial small ribosomal subunit;3.80407965310752e-05!GO:0005905;coated pit;3.89638614900696e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.89638614900696e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.97421938261547e-05!GO:0006752;group transfer coenzyme metabolic process;4.04639203139468e-05!GO:0051427;hormone receptor binding;4.08181026967955e-05!GO:0031410;cytoplasmic vesicle;4.17814742716799e-05!GO:0006414;translational elongation;4.93787332514266e-05!GO:0005798;Golgi-associated vesicle;5.26390417289127e-05!GO:0007051;spindle organization and biogenesis;5.72124253569453e-05!GO:0005813;centrosome;5.94639441698885e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.41911639624888e-05!GO:0000151;ubiquitin ligase complex;7.15117138567834e-05!GO:0016568;chromatin modification;8.36309028950659e-05!GO:0005657;replication fork;8.4306640570653e-05!GO:0008094;DNA-dependent ATPase activity;8.88000927626898e-05!GO:0035257;nuclear hormone receptor binding;9.04494362277074e-05!GO:0016787;hydrolase activity;9.24338000848267e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;9.26533861746293e-05!GO:0030867;rough endoplasmic reticulum membrane;9.89414939726301e-05!GO:0005773;vacuole;0.000102323851611944!GO:0003682;chromatin binding;0.000113513809044961!GO:0006261;DNA-dependent DNA replication;0.000116602837790515!GO:0006793;phosphorus metabolic process;0.000134905146843825!GO:0006796;phosphate metabolic process;0.000134905146843825!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000137337625534291!GO:0008186;RNA-dependent ATPase activity;0.000147157754044942!GO:0045786;negative regulation of progression through cell cycle;0.000147521803105123!GO:0016310;phosphorylation;0.000149529898675469!GO:0043021;ribonucleoprotein binding;0.000156708894287951!GO:0051789;response to protein stimulus;0.000170984021811846!GO:0006986;response to unfolded protein;0.000170984021811846!GO:0005525;GTP binding;0.000173438168596981!GO:0031252;leading edge;0.000184419872210996!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000259989474976557!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000260627066757931!GO:0005815;microtubule organizing center;0.000267911924883598!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000299716317556804!GO:0015399;primary active transmembrane transporter activity;0.000299716317556804!GO:0043284;biopolymer biosynthetic process;0.000309537675706667!GO:0007010;cytoskeleton organization and biogenesis;0.000321482397954002!GO:0003713;transcription coactivator activity;0.000337311723787238!GO:0008033;tRNA processing;0.000354347166786465!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000355432363183618!GO:0033116;ER-Golgi intermediate compartment membrane;0.000355432363183618!GO:0046474;glycerophospholipid biosynthetic process;0.00036611376508098!GO:0000775;chromosome, pericentric region;0.000383578867030376!GO:0048522;positive regulation of cellular process;0.000386979542690689!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000396950172827398!GO:0004004;ATP-dependent RNA helicase activity;0.000404666416305956!GO:0050794;regulation of cellular process;0.000425997566245798!GO:0043681;protein import into mitochondrion;0.000455373629576166!GO:0016044;membrane organization and biogenesis;0.0004664377534421!GO:0016049;cell growth;0.000477417155976615!GO:0008361;regulation of cell size;0.000478798846639508!GO:0005874;microtubule;0.000538017486418706!GO:0044440;endosomal part;0.000540334772046177!GO:0010008;endosome membrane;0.000540334772046177!GO:0048468;cell development;0.00057859119913882!GO:0008250;oligosaccharyl transferase complex;0.000604823076138214!GO:0019899;enzyme binding;0.000608570213355704!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000636593525510135!GO:0005885;Arp2/3 protein complex;0.000665633964678579!GO:0006612;protein targeting to membrane;0.000666241963972534!GO:0005048;signal sequence binding;0.0006767957815677!GO:0000323;lytic vacuole;0.000708601170252798!GO:0005764;lysosome;0.000708601170252798!GO:0016564;transcription repressor activity;0.000755693682147743!GO:0016563;transcription activator activity;0.000813568312950566!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000831048242376295!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00084655874526594!GO:0005769;early endosome;0.00084655874526594!GO:0000786;nucleosome;0.000878001115447466!GO:0044262;cellular carbohydrate metabolic process;0.000889764612202347!GO:0009165;nucleotide biosynthetic process;0.00090637160680334!GO:0031324;negative regulation of cellular metabolic process;0.000935326592809025!GO:0005770;late endosome;0.000946073926656873!GO:0004576;oligosaccharyl transferase activity;0.00099523164236497!GO:0048471;perinuclear region of cytoplasm;0.00099523164236497!GO:0044452;nucleolar part;0.0010097865441097!GO:0006626;protein targeting to mitochondrion;0.0010616589710353!GO:0042802;identical protein binding;0.00107058875790318!GO:0030137;COPI-coated vesicle;0.00111995995084895!GO:0051920;peroxiredoxin activity;0.00114823456691776!GO:0006839;mitochondrial transport;0.0011504999310607!GO:0051252;regulation of RNA metabolic process;0.00119696877745608!GO:0018196;peptidyl-asparagine modification;0.00131587397531743!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00131587397531743!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00133088269612825!GO:0016859;cis-trans isomerase activity;0.00133088269612825!GO:0001558;regulation of cell growth;0.00148762180603694!GO:0046489;phosphoinositide biosynthetic process;0.00150069145176757!GO:0005684;U2-dependent spliceosome;0.00153861979306749!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00154655897173655!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00154655897173655!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00154655897173655!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00154655897173655!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00155203245850508!GO:0006818;hydrogen transport;0.0015946776991471!GO:0032561;guanyl ribonucleotide binding;0.00170878271645164!GO:0019001;guanyl nucleotide binding;0.00170878271645164!GO:0003714;transcription corepressor activity;0.00177872499908586!GO:0003684;damaged DNA binding;0.00178537566928328!GO:0008610;lipid biosynthetic process;0.00180236444592927!GO:0046467;membrane lipid biosynthetic process;0.00180496646152956!GO:0015992;proton transport;0.00180910663048721!GO:0003746;translation elongation factor activity;0.00194161523628532!GO:0008632;apoptotic program;0.00197013060676047!GO:0051101;regulation of DNA binding;0.00198892766831212!GO:0005791;rough endoplasmic reticulum;0.0020018330141905!GO:0006302;double-strand break repair;0.00203801058614422!GO:0015631;tubulin binding;0.00215177815918027!GO:0019843;rRNA binding;0.00216639881012127!GO:0030118;clathrin coat;0.00227061579278822!GO:0006383;transcription from RNA polymerase III promoter;0.00240527832037458!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00247450908083079!GO:0048487;beta-tubulin binding;0.00252263476143022!GO:0030880;RNA polymerase complex;0.00266696869596987!GO:0030133;transport vesicle;0.00267099578787796!GO:0000059;protein import into nucleus, docking;0.00270232034832404!GO:0000075;cell cycle checkpoint;0.00285889767474192!GO:0030663;COPI coated vesicle membrane;0.002926074936358!GO:0030126;COPI vesicle coat;0.002926074936358!GO:0003678;DNA helicase activity;0.00305413654550614!GO:0016363;nuclear matrix;0.0030772872248025!GO:0043065;positive regulation of apoptosis;0.0030772872248025!GO:0006401;RNA catabolic process;0.00311252827054788!GO:0006611;protein export from nucleus;0.00319921148634594!GO:0019867;outer membrane;0.00319921148634594!GO:0007006;mitochondrial membrane organization and biogenesis;0.00328756319253337!GO:0032508;DNA duplex unwinding;0.00330464239347602!GO:0032392;DNA geometric change;0.00330464239347602!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00331249356195749!GO:0043492;ATPase activity, coupled to movement of substances;0.00333721740046617!GO:0008139;nuclear localization sequence binding;0.00353081425737712!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00356691739287831!GO:0006405;RNA export from nucleus;0.00361778714264776!GO:0009892;negative regulation of metabolic process;0.00361778714264776!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00363333241695024!GO:0005637;nuclear inner membrane;0.0036383152252862!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00368544945963499!GO:0051087;chaperone binding;0.0039561240398007!GO:0031968;organelle outer membrane;0.00398894408329152!GO:0048500;signal recognition particle;0.00402032505389038!GO:0030036;actin cytoskeleton organization and biogenesis;0.00404752354540467!GO:0043068;positive regulation of programmed cell death;0.0040957899139775!GO:0030659;cytoplasmic vesicle membrane;0.00412250942569566!GO:0003729;mRNA binding;0.00413492142064379!GO:0006672;ceramide metabolic process;0.00423086841058052!GO:0005758;mitochondrial intermembrane space;0.00423086841058052!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00424886681020287!GO:0003690;double-stranded DNA binding;0.00434184363318987!GO:0006402;mRNA catabolic process;0.00436791836475591!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0043854841184643!GO:0000776;kinetochore;0.00450609408916958!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00462522292447868!GO:0006509;membrane protein ectodomain proteolysis;0.0046460454712274!GO:0033619;membrane protein proteolysis;0.0046460454712274!GO:0035258;steroid hormone receptor binding;0.0047568579652065!GO:0006650;glycerophospholipid metabolic process;0.0047568579652065!GO:0043488;regulation of mRNA stability;0.00479112684342474!GO:0043487;regulation of RNA stability;0.00479112684342474!GO:0006352;transcription initiation;0.00480956593586025!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00482785152106558!GO:0008092;cytoskeletal protein binding;0.00489168271442227!GO:0003711;transcription elongation regulator activity;0.00499701238603845!GO:0030119;AP-type membrane coat adaptor complex;0.00508143516378886!GO:0030658;transport vesicle membrane;0.00517325421998954!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00528870714724627!GO:0000428;DNA-directed RNA polymerase complex;0.00528870714724627!GO:0006979;response to oxidative stress;0.00542562900644137!GO:0030132;clathrin coat of coated pit;0.00548909550454062!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00551954405211597!GO:0000082;G1/S transition of mitotic cell cycle;0.0055490279689174!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.005942116841407!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.005942116841407!GO:0046519;sphingoid metabolic process;0.00597919729349128!GO:0048518;positive regulation of biological process;0.00600101713001722!GO:0006891;intra-Golgi vesicle-mediated transport;0.00670995352481124!GO:0019752;carboxylic acid metabolic process;0.00679894933649505!GO:0006082;organic acid metabolic process;0.00701095727082027!GO:0001726;ruffle;0.00701095727082027!GO:0006310;DNA recombination;0.00703418395148724!GO:0030131;clathrin adaptor complex;0.00710769960772127!GO:0006897;endocytosis;0.00754939469485877!GO:0010324;membrane invagination;0.00754939469485877!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00762147021106529!GO:0015002;heme-copper terminal oxidase activity;0.00762147021106529!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00762147021106529!GO:0004129;cytochrome-c oxidase activity;0.00762147021106529!GO:0008312;7S RNA binding;0.00773311353529751!GO:0006268;DNA unwinding during replication;0.00804979042954467!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00804979042954467!GO:0016860;intramolecular oxidoreductase activity;0.0083140571093304!GO:0006740;NADPH regeneration;0.00841747746483717!GO:0006098;pentose-phosphate shunt;0.00841747746483717!GO:0030027;lamellipodium;0.00844805940591912!GO:0006520;amino acid metabolic process;0.00846911775735564!GO:0006497;protein amino acid lipidation;0.0086516356302681!GO:0006595;polyamine metabolic process;0.00868077743242233!GO:0016251;general RNA polymerase II transcription factor activity;0.00874941566210977!GO:0006506;GPI anchor biosynthetic process;0.00886446510116281!GO:0017166;vinculin binding;0.00913181742851737!GO:0031970;organelle envelope lumen;0.00916685015926256!GO:0050662;coenzyme binding;0.00918155222300248!GO:0007243;protein kinase cascade;0.00928500752952192!GO:0005876;spindle microtubule;0.00938545577015687!GO:0030176;integral to endoplasmic reticulum membrane;0.00945174321320062!GO:0016481;negative regulation of transcription;0.00956272489573102!GO:0042158;lipoprotein biosynthetic process;0.00975802244094333!GO:0008022;protein C-terminus binding;0.00977335563126855!GO:0006144;purine base metabolic process;0.00978825383107817!GO:0030384;phosphoinositide metabolic process;0.00999482272690586!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00999482272690586!GO:0045047;protein targeting to ER;0.00999482272690586!GO:0044433;cytoplasmic vesicle part;0.0100322166064352!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0101955941260218!GO:0006739;NADP metabolic process;0.0102927139970847!GO:0007017;microtubule-based process;0.0104623926614972!GO:0007264;small GTPase mediated signal transduction;0.0104898440948371!GO:0050789;regulation of biological process;0.0106423406261996!GO:0005832;chaperonin-containing T-complex;0.0107626246165474!GO:0007052;mitotic spindle organization and biogenesis;0.0113431340449336!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0120520097297439!GO:0004527;exonuclease activity;0.0121833872736785!GO:0008180;signalosome;0.0124302091267618!GO:0004518;nuclease activity;0.0124491670058475!GO:0006733;oxidoreduction coenzyme metabolic process;0.012545308702806!GO:0016126;sterol biosynthetic process;0.0129009704892724!GO:0008629;induction of apoptosis by intracellular signals;0.0129855325705479!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0130469026624933!GO:0003756;protein disulfide isomerase activity;0.0130469026624933!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0130469026624933!GO:0006284;base-excision repair;0.0130539245142794!GO:0016272;prefoldin complex;0.013113397486025!GO:0005862;muscle thin filament tropomyosin;0.0132286171469175!GO:0006505;GPI anchor metabolic process;0.0133534856646696!GO:0051052;regulation of DNA metabolic process;0.0133783674187141!GO:0031124;mRNA 3'-end processing;0.0136832162460829!GO:0030660;Golgi-associated vesicle membrane;0.0137394720008086!GO:0006289;nucleotide-excision repair;0.0137411251593024!GO:0030125;clathrin vesicle coat;0.0138725106311718!GO:0030665;clathrin coated vesicle membrane;0.0138725106311718!GO:0000339;RNA cap binding;0.0139079586622854!GO:0006458;'de novo' protein folding;0.0139249644310712!GO:0051084;'de novo' posttranslational protein folding;0.0139249644310712!GO:0005741;mitochondrial outer membrane;0.0139249644310712!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.013928121642045!GO:0007088;regulation of mitosis;0.0139909560077521!GO:0043189;H4/H2A histone acetyltransferase complex;0.0139909560077521!GO:0065009;regulation of a molecular function;0.0139909560077521!GO:0005869;dynactin complex;0.0140387691841959!GO:0012506;vesicle membrane;0.0147383668185729!GO:0030521;androgen receptor signaling pathway;0.015101085503693!GO:0030029;actin filament-based process;0.0154027959190418!GO:0007021;tubulin folding;0.015566624778867!GO:0051098;regulation of binding;0.0155936033339643!GO:0006118;electron transport;0.0156786271268178!GO:0043022;ribosome binding;0.0160268452372626!GO:0022890;inorganic cation transmembrane transporter activity;0.016446656570236!GO:0006007;glucose catabolic process;0.0168561734903389!GO:0006778;porphyrin metabolic process;0.0169373665016457!GO:0033013;tetrapyrrole metabolic process;0.0169373665016457!GO:0016197;endosome transport;0.0173530676288734!GO:0007040;lysosome organization and biogenesis;0.0178974363693849!GO:0005774;vacuolar membrane;0.0183449189719006!GO:0030134;ER to Golgi transport vesicle;0.0194911577184362!GO:0004674;protein serine/threonine kinase activity;0.0201778419288709!GO:0004532;exoribonuclease activity;0.0207855414883244!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0207855414883244!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0215267118116444!GO:0007059;chromosome segregation;0.0215267118116444!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0215267118116444!GO:0040008;regulation of growth;0.0216317255768624!GO:0035267;NuA4 histone acetyltransferase complex;0.0216667674882689!GO:0009112;nucleobase metabolic process;0.0224442464886605!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0224872897893458!GO:0004003;ATP-dependent DNA helicase activity;0.022585773682809!GO:0030145;manganese ion binding;0.0230474431575881!GO:0046966;thyroid hormone receptor binding;0.0234920051519326!GO:0008538;proteasome activator activity;0.0243573121489548!GO:0006378;mRNA polyadenylation;0.0244465074426991!GO:0031272;regulation of pseudopodium formation;0.0247929523277023!GO:0031269;pseudopodium formation;0.0247929523277023!GO:0031344;regulation of cell projection organization and biogenesis;0.0247929523277023!GO:0031268;pseudopodium organization and biogenesis;0.0247929523277023!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0247929523277023!GO:0031274;positive regulation of pseudopodium formation;0.0247929523277023!GO:0051085;chaperone cofactor-dependent protein folding;0.0249611440828683!GO:0045893;positive regulation of transcription, DNA-dependent;0.0257710951611571!GO:0006769;nicotinamide metabolic process;0.025965341048427!GO:0006892;post-Golgi vesicle-mediated transport;0.0262415097700326!GO:0042393;histone binding;0.0266228010091568!GO:0004177;aminopeptidase activity;0.0268872504633021!GO:0000086;G2/M transition of mitotic cell cycle;0.0270907972962402!GO:0051287;NAD binding;0.0272121941174215!GO:0045941;positive regulation of transcription;0.0272406427586092!GO:0042168;heme metabolic process;0.0272727010580468!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0275103656801336!GO:0035035;histone acetyltransferase binding;0.0275805903731613!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0275805903731613!GO:0008601;protein phosphatase type 2A regulator activity;0.0275805903731613!GO:0000792;heterochromatin;0.0275805903731613!GO:0000123;histone acetyltransferase complex;0.0277412857479066!GO:0008637;apoptotic mitochondrial changes;0.027985962464532!GO:0007033;vacuole organization and biogenesis;0.0281493382742377!GO:0016741;transferase activity, transferring one-carbon groups;0.0284246431876111!GO:0006354;RNA elongation;0.0286856294191275!GO:0007093;mitotic cell cycle checkpoint;0.0286893745703307!GO:0030833;regulation of actin filament polymerization;0.0286893745703307!GO:0006807;nitrogen compound metabolic process;0.0289827817880898!GO:0006695;cholesterol biosynthetic process;0.0295712647269698!GO:0045045;secretory pathway;0.0302837093826814!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0303556903593772!GO:0043596;nuclear replication fork;0.030470699859928!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0306167528575373!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0307158235881633!GO:0030031;cell projection biogenesis;0.0308745420860138!GO:0006984;ER-nuclear signaling pathway;0.0309925816869604!GO:0030496;midbody;0.0312728566289159!GO:0043624;cellular protein complex disassembly;0.0316607212929886!GO:0030041;actin filament polymerization;0.0320868198746136!GO:0008168;methyltransferase activity;0.032146155060102!GO:0009116;nucleoside metabolic process;0.0325809606710813!GO:0046483;heterocycle metabolic process;0.0325809606710813!GO:0016584;nucleosome positioning;0.0327873045855263!GO:0008283;cell proliferation;0.0328070381878481!GO:0045792;negative regulation of cell size;0.0334246865345147!GO:0048037;cofactor binding;0.0338626588078926!GO:0006950;response to stress;0.0357736426929347!GO:0030149;sphingolipid catabolic process;0.0357996274270515!GO:0007346;regulation of progression through mitotic cell cycle;0.0357996274270515!GO:0051540;metal cluster binding;0.0357996274270515!GO:0051536;iron-sulfur cluster binding;0.0357996274270515!GO:0031529;ruffle organization and biogenesis;0.0359256621113161!GO:0009303;rRNA transcription;0.0362283581279841!GO:0030308;negative regulation of cell growth;0.036298889417741!GO:0000049;tRNA binding;0.0380394057292583!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0385689979988682!GO:0044437;vacuolar part;0.0406366362766138!GO:0006779;porphyrin biosynthetic process;0.0416185187195002!GO:0033014;tetrapyrrole biosynthetic process;0.0416185187195002!GO:0006519;amino acid and derivative metabolic process;0.0418966846424812!GO:0005784;translocon complex;0.0421281381379056!GO:0046822;regulation of nucleocytoplasmic transport;0.0422537734009161!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0425256334647089!GO:0030127;COPII vesicle coat;0.0425278488772285!GO:0012507;ER to Golgi transport vesicle membrane;0.0425278488772285!GO:0009308;amine metabolic process;0.0427478194237488!GO:0043414;biopolymer methylation;0.0430814678648039!GO:0000096;sulfur amino acid metabolic process;0.0431591867580525!GO:0031072;heat shock protein binding;0.044608525616852!GO:0015036;disulfide oxidoreductase activity;0.0446569469808087!GO:0030911;TPR domain binding;0.0448296714489233!GO:0000910;cytokinesis;0.0451817113993018!GO:0008017;microtubule binding;0.0461943257079737!GO:0032259;methylation;0.0464995188033694!GO:0032981;mitochondrial respiratory chain complex I assembly;0.046988334622766!GO:0010257;NADH dehydrogenase complex assembly;0.046988334622766!GO:0033108;mitochondrial respiratory chain complex assembly;0.046988334622766!GO:0030433;ER-associated protein catabolic process;0.0475314794087268!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0475314794087268!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0483932136146448!GO:0050681;androgen receptor binding;0.0488494239667246!GO:0051100;negative regulation of binding;0.0496362159377457 | |||
|sample_id=10855 | |sample_id=10855 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=mesothelium | |sample_tissue=mesothelium | ||
|top_motifs=HOXA9_MEIS1:1.63242599923;NKX3-1:1.47227217076;TEAD1:1.16531608044;ZIC1..3:1.16400689966;NKX3-2:1.02217503507;GLI1..3:0.988277017834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.978645953728;EP300:0.964770130817;HAND1,2:0.958631798094;STAT5{A,B}:0.940950100398;TBP:0.814708819419;TOPORS:0.80417157904;GCM1,2:0.763022889706;TEF:0.748299508797;PPARG:0.745234429867;IKZF1:0.742691606503;LMO2:0.717864968916;ZEB1:0.706605599182;NR6A1:0.701377088672;TFCP2:0.697049060763;E2F1..5:0.6917397809;PAX4:0.689480595169;TP53:0.681531272297;EBF1:0.672546179238;XCPE1{core}:0.649138946284;STAT2,4,6:0.635720846352;ADNP_IRX_SIX_ZHX:0.627874656277;HOX{A5,B5}:0.5920929859;HES1:0.565756603928;MYOD1:0.540045650163;ZNF148:0.505717902141;PAX5:0.474051123456;GFI1B:0.468751963583;T:0.465541709913;TAL1_TCF{3,4,12}:0.463305552512;LEF1_TCF7_TCF7L1,2:0.446546744478;ESRRA:0.441342061113;SNAI1..3:0.402683365134;GFI1:0.401524769545;UFEwm:0.380289161721;RXRA_VDR{dimer}:0.378793925301;ZNF384:0.370692070146;HOX{A6,A7,B6,B7}:0.362855486998;NFE2:0.346245746688;REST:0.342315320176;POU2F1..3:0.331162153339;ZBTB6:0.3051563896;LHX3,4:0.291086946049;RXR{A,B,G}:0.285549725976;TFAP2B:0.271770632993;NFE2L1:0.256742582991;SMAD1..7,9:0.250217301052;MAZ:0.249544331613;CDC5L:0.246570983498;FOXL1:0.231105457021;FOX{I1,J2}:0.22919878205;TLX1..3_NFIC{dimer}:0.199345094852;bHLH_family:0.199229617595;NANOG:0.194819589295;GTF2I:0.190661133857;EVI1:0.183595204633;POU6F1:0.172197756022;NR3C1:0.153808598717;MTE{core}:0.13609992366;ZNF238:0.128014475339;RREB1:0.110717993731;ZNF423:0.110132496756;ALX1:0.108490681532;NFE2L2:0.108326743118;KLF4:0.0865077915575;ALX4:0.0806913539188;CEBPA,B_DDIT3:0.0798182446184;MYBL2:0.0797765345279;POU5F1:0.0767406378893;TFAP4:0.0578327713658;NR5A1,2:0.0458262955099;TFAP2{A,C}:0.0428187564052;FOS_FOS{B,L1}_JUN{B,D}:0.0398267766861;HSF1,2:0.0343648664445;FOXQ1:0.0166476671006;TBX4,5:0.00471814612915;HIC1:-0.00333164196446;POU1F1:-0.00753565095477;BACH2:-0.010253626584;HNF1A:-0.0151852184795;RORA:-0.019204193468;HLF:-0.0302930038873;ELK1,4_GABP{A,B1}:-0.0325863014683;FOXM1:-0.0494996999308;SP1:-0.062908135558;MAFB:-0.0632879020316;PAX8:-0.0641724564315;CRX:-0.0695056719373;ARID5B:-0.0851609421892;GATA4:-0.0937598380689;MZF1:-0.116672048961;JUN:-0.123167227205;HNF4A_NR2F1,2:-0.136245617807;SRF:-0.139736911481;AIRE:-0.150211516712;MED-1{core}:-0.15656161521;PITX1..3:-0.156725818066;PRRX1,2:-0.162512663742;EGR1..3:-0.181078971796;SOX5:-0.181484765725;SPZ1:-0.187509319079;NKX2-3_NKX2-5:-0.201482458236;GTF2A1,2:-0.203553739438;NFY{A,B,C}:-0.205019528698;VSX1,2:-0.211735846958;ONECUT1,2:-0.214056672093;TLX2:-0.21532717069;MEF2{A,B,C,D}:-0.217113406042;CDX1,2,4:-0.223365456465;TFDP1:-0.229581871499;FOSL2:-0.231647159932;SOX{8,9,10}:-0.232400079758;PAX1,9:-0.247342535173;NKX6-1,2:-0.25101491047;RBPJ:-0.254472900275;GATA6:-0.26052852429;GZF1:-0.267700598245;POU3F1..4:-0.273246875786;MTF1:-0.282559713158;RFX1:-0.309168162021;EN1,2:-0.317939190323;FOXP3:-0.337423327738;NFKB1_REL_RELA:-0.351675411191;HMX1:-0.355527989759;PATZ1:-0.364276948975;STAT1,3:-0.377300468335;SOX2:-0.381349705069;MYB:-0.388788436257;PAX6:-0.39278144428;NRF1:-0.393016963783;HMGA1,2:-0.399437234087;ZNF143:-0.407585193617;NR1H4:-0.41299000471;OCT4_SOX2{dimer}:-0.416034066575;SPIB:-0.422363308189;ESR1:-0.443883278214;PRDM1:-0.461074495327;MYFfamily:-0.465563826728;FOXD3:-0.467541586372;ZBTB16:-0.468656252688;AR:-0.474229355857;HOX{A4,D4}:-0.480092032913;PBX1:-0.493102894436;FOX{F1,F2,J1}:-0.506485478549;RFX2..5_RFXANK_RFXAP:-0.535722305696;ETS1,2:-0.547621768289;YY1:-0.564730075454;IRF7:-0.60604583137;PAX3,7:-0.609625627401;NKX2-1,4:-0.619576339058;NKX2-2,8:-0.620054077444;NFATC1..3:-0.655454267032;NFIX:-0.655729018811;ELF1,2,4:-0.660681711813;PAX2:-0.678158736736;DBP:-0.681387506877;XBP1:-0.683622511794;RUNX1..3:-0.693634419768;ATF5_CREB3:-0.696057303346;IRF1,2:-0.714148575831;FOXP1:-0.717011347369;ATF4:-0.725378285983;SPI1:-0.740509505005;IKZF2:-0.763435283171;BREu{core}:-0.764213473642;NFIL3:-0.804200753454;FOXA2:-0.804257487996;DMAP1_NCOR{1,2}_SMARC:-0.858720520459;NHLH1,2:-0.952512651715;HBP1_HMGB_SSRP1_UBTF:-0.957002398572;ATF2:-0.976319238845;CUX2:-0.985449574573;FOXO1,3,4:-1.08020633018;FOXN1:-1.14166371326;TGIF1:-1.16462197061;NANOG{mouse}:-1.2029097156;FOX{D1,D2}:-1.20365546913;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.20483952148;SREBF1,2:-1.2158075287;ATF6:-1.24242210416;SOX17:-1.25191250343;BPTF:-1.312948757;AHR_ARNT_ARNT2:-1.37277631505;CREB1:-1.57340005806;PDX1:-1.57975584446;HIF1A:-1.77082526294;ZFP161:-1.87598793966 | |top_motifs=HOXA9_MEIS1:1.63242599923;NKX3-1:1.47227217076;TEAD1:1.16531608044;ZIC1..3:1.16400689966;NKX3-2:1.02217503507;GLI1..3:0.988277017834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.978645953728;EP300:0.964770130817;HAND1,2:0.958631798094;STAT5{A,B}:0.940950100398;TBP:0.814708819419;TOPORS:0.80417157904;GCM1,2:0.763022889706;TEF:0.748299508797;PPARG:0.745234429867;IKZF1:0.742691606503;LMO2:0.717864968916;ZEB1:0.706605599182;NR6A1:0.701377088672;TFCP2:0.697049060763;E2F1..5:0.6917397809;PAX4:0.689480595169;TP53:0.681531272297;EBF1:0.672546179238;XCPE1{core}:0.649138946284;STAT2,4,6:0.635720846352;ADNP_IRX_SIX_ZHX:0.627874656277;HOX{A5,B5}:0.5920929859;HES1:0.565756603928;MYOD1:0.540045650163;ZNF148:0.505717902141;PAX5:0.474051123456;GFI1B:0.468751963583;T:0.465541709913;TAL1_TCF{3,4,12}:0.463305552512;LEF1_TCF7_TCF7L1,2:0.446546744478;ESRRA:0.441342061113;SNAI1..3:0.402683365134;GFI1:0.401524769545;UFEwm:0.380289161721;RXRA_VDR{dimer}:0.378793925301;ZNF384:0.370692070146;HOX{A6,A7,B6,B7}:0.362855486998;NFE2:0.346245746688;REST:0.342315320176;POU2F1..3:0.331162153339;ZBTB6:0.3051563896;LHX3,4:0.291086946049;RXR{A,B,G}:0.285549725976;TFAP2B:0.271770632993;NFE2L1:0.256742582991;SMAD1..7,9:0.250217301052;MAZ:0.249544331613;CDC5L:0.246570983498;FOXL1:0.231105457021;FOX{I1,J2}:0.22919878205;TLX1..3_NFIC{dimer}:0.199345094852;bHLH_family:0.199229617595;NANOG:0.194819589295;GTF2I:0.190661133857;EVI1:0.183595204633;POU6F1:0.172197756022;NR3C1:0.153808598717;MTE{core}:0.13609992366;ZNF238:0.128014475339;RREB1:0.110717993731;ZNF423:0.110132496756;ALX1:0.108490681532;NFE2L2:0.108326743118;KLF4:0.0865077915575;ALX4:0.0806913539188;CEBPA,B_DDIT3:0.0798182446184;MYBL2:0.0797765345279;POU5F1:0.0767406378893;TFAP4:0.0578327713658;NR5A1,2:0.0458262955099;TFAP2{A,C}:0.0428187564052;FOS_FOS{B,L1}_JUN{B,D}:0.0398267766861;HSF1,2:0.0343648664445;FOXQ1:0.0166476671006;TBX4,5:0.00471814612915;HIC1:-0.00333164196446;POU1F1:-0.00753565095477;BACH2:-0.010253626584;HNF1A:-0.0151852184795;RORA:-0.019204193468;HLF:-0.0302930038873;ELK1,4_GABP{A,B1}:-0.0325863014683;FOXM1:-0.0494996999308;SP1:-0.062908135558;MAFB:-0.0632879020316;PAX8:-0.0641724564315;CRX:-0.0695056719373;ARID5B:-0.0851609421892;GATA4:-0.0937598380689;MZF1:-0.116672048961;JUN:-0.123167227205;HNF4A_NR2F1,2:-0.136245617807;SRF:-0.139736911481;AIRE:-0.150211516712;MED-1{core}:-0.15656161521;PITX1..3:-0.156725818066;PRRX1,2:-0.162512663742;EGR1..3:-0.181078971796;SOX5:-0.181484765725;SPZ1:-0.187509319079;NKX2-3_NKX2-5:-0.201482458236;GTF2A1,2:-0.203553739438;NFY{A,B,C}:-0.205019528698;VSX1,2:-0.211735846958;ONECUT1,2:-0.214056672093;TLX2:-0.21532717069;MEF2{A,B,C,D}:-0.217113406042;CDX1,2,4:-0.223365456465;TFDP1:-0.229581871499;FOSL2:-0.231647159932;SOX{8,9,10}:-0.232400079758;PAX1,9:-0.247342535173;NKX6-1,2:-0.25101491047;RBPJ:-0.254472900275;GATA6:-0.26052852429;GZF1:-0.267700598245;POU3F1..4:-0.273246875786;MTF1:-0.282559713158;RFX1:-0.309168162021;EN1,2:-0.317939190323;FOXP3:-0.337423327738;NFKB1_REL_RELA:-0.351675411191;HMX1:-0.355527989759;PATZ1:-0.364276948975;STAT1,3:-0.377300468335;SOX2:-0.381349705069;MYB:-0.388788436257;PAX6:-0.39278144428;NRF1:-0.393016963783;HMGA1,2:-0.399437234087;ZNF143:-0.407585193617;NR1H4:-0.41299000471;OCT4_SOX2{dimer}:-0.416034066575;SPIB:-0.422363308189;ESR1:-0.443883278214;PRDM1:-0.461074495327;MYFfamily:-0.465563826728;FOXD3:-0.467541586372;ZBTB16:-0.468656252688;AR:-0.474229355857;HOX{A4,D4}:-0.480092032913;PBX1:-0.493102894436;FOX{F1,F2,J1}:-0.506485478549;RFX2..5_RFXANK_RFXAP:-0.535722305696;ETS1,2:-0.547621768289;YY1:-0.564730075454;IRF7:-0.60604583137;PAX3,7:-0.609625627401;NKX2-1,4:-0.619576339058;NKX2-2,8:-0.620054077444;NFATC1..3:-0.655454267032;NFIX:-0.655729018811;ELF1,2,4:-0.660681711813;PAX2:-0.678158736736;DBP:-0.681387506877;XBP1:-0.683622511794;RUNX1..3:-0.693634419768;ATF5_CREB3:-0.696057303346;IRF1,2:-0.714148575831;FOXP1:-0.717011347369;ATF4:-0.725378285983;SPI1:-0.740509505005;IKZF2:-0.763435283171;BREu{core}:-0.764213473642;NFIL3:-0.804200753454;FOXA2:-0.804257487996;DMAP1_NCOR{1,2}_SMARC:-0.858720520459;NHLH1,2:-0.952512651715;HBP1_HMGB_SSRP1_UBTF:-0.957002398572;ATF2:-0.976319238845;CUX2:-0.985449574573;FOXO1,3,4:-1.08020633018;FOXN1:-1.14166371326;TGIF1:-1.16462197061;NANOG{mouse}:-1.2029097156;FOX{D1,D2}:-1.20365546913;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.20483952148;SREBF1,2:-1.2158075287;ATF6:-1.24242210416;SOX17:-1.25191250343;BPTF:-1.312948757;AHR_ARNT_ARNT2:-1.37277631505;CREB1:-1.57340005806;PDX1:-1.57975584446;HIF1A:-1.77082526294;ZFP161:-1.87598793966 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10855-111F9;search_select_hide=table117:FF:10855-111F9 | |||
}} | }} | ||
Latest revision as of 15:10, 3 June 2020
| Name: | mesothelioma cell line:Mero-84 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13072 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13072
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13072
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.333 |
| 10 | 10 | 0.16 |
| 100 | 100 | 0.225 |
| 101 | 101 | 0.172 |
| 102 | 102 | 0.274 |
| 103 | 103 | 0.286 |
| 104 | 104 | 0.712 |
| 105 | 105 | 0.915 |
| 106 | 106 | 0.179 |
| 107 | 107 | 0.0547 |
| 108 | 108 | 0.773 |
| 109 | 109 | 0.0539 |
| 11 | 11 | 0.262 |
| 110 | 110 | 0.0336 |
| 111 | 111 | 0.961 |
| 112 | 112 | 0.496 |
| 113 | 113 | 0.397 |
| 114 | 114 | 0.764 |
| 115 | 115 | 0.192 |
| 116 | 116 | 0.0557 |
| 117 | 117 | 0.147 |
| 118 | 118 | 0.724 |
| 119 | 119 | 0.176 |
| 12 | 12 | 0.828 |
| 120 | 120 | 0.11 |
| 121 | 121 | 0.858 |
| 122 | 122 | 0.607 |
| 123 | 123 | 0.731 |
| 124 | 124 | 0.97 |
| 125 | 125 | 0.0318 |
| 126 | 126 | 0.635 |
| 127 | 127 | 0.274 |
| 128 | 128 | 0.333 |
| 129 | 129 | 0.298 |
| 13 | 13 | 0.138 |
| 130 | 130 | 0.226 |
| 131 | 131 | 0.951 |
| 132 | 132 | 0.31 |
| 133 | 133 | 0.155 |
| 134 | 134 | 0.768 |
| 135 | 135 | 0.674 |
| 136 | 136 | 0.469 |
| 137 | 137 | 0.059 |
| 138 | 138 | 0.471 |
| 139 | 139 | 0.323 |
| 14 | 14 | 0.914 |
| 140 | 140 | 0.66 |
| 141 | 141 | 0.164 |
| 142 | 142 | 0.694 |
| 143 | 143 | 0.482 |
| 144 | 144 | 0.438 |
| 145 | 145 | 0.512 |
| 146 | 146 | 0.155 |
| 147 | 147 | 0.0606 |
| 148 | 148 | 0.406 |
| 149 | 149 | 0.0588 |
| 15 | 15 | 0.344 |
| 150 | 150 | 0.255 |
| 151 | 151 | 0.338 |
| 152 | 152 | 0.0253 |
| 153 | 153 | 0.988 |
| 154 | 154 | 0.764 |
| 155 | 155 | 0.833 |
| 156 | 156 | 0.197 |
| 157 | 157 | 0.455 |
| 158 | 158 | 0.0228 |
| 159 | 159 | 0.366 |
| 16 | 16 | 0.0813 |
| 160 | 160 | 0.0172 |
| 161 | 161 | 0.0266 |
| 162 | 162 | 0.0181 |
| 163 | 163 | 0.919 |
| 164 | 164 | 0.484 |
| 165 | 165 | 0.976 |
| 166 | 166 | 0.213 |
| 167 | 167 | 0.196 |
| 168 | 168 | 0.466 |
| 169 | 169 | 0.0429 |
| 17 | 17 | 0.44 |
| 18 | 18 | 0.407 |
| 19 | 19 | 0.434 |
| 2 | 2 | 0.197 |
| 20 | 20 | 0.251 |
| 21 | 21 | 0.349 |
| 22 | 22 | 0.257 |
| 23 | 23 | 0.289 |
| 24 | 24 | 0.49 |
| 25 | 25 | 0.975 |
| 26 | 26 | 0.748 |
| 27 | 27 | 0.233 |
| 28 | 28 | 0.895 |
| 29 | 29 | 0.633 |
| 3 | 3 | 0.593 |
| 30 | 30 | 0.235 |
| 31 | 31 | 0.678 |
| 32 | 32 | 0.193 |
| 33 | 33 | 0.557 |
| 34 | 34 | 0.485 |
| 35 | 35 | 0.788 |
| 36 | 36 | 0.81 |
| 37 | 37 | 0.371 |
| 38 | 38 | 0.564 |
| 39 | 39 | 0.322 |
| 4 | 4 | 0.922 |
| 40 | 40 | 0.0154 |
| 41 | 41 | 0.0341 |
| 42 | 42 | 0.28 |
| 43 | 43 | 0.833 |
| 44 | 44 | 0.238 |
| 45 | 45 | 0.235 |
| 46 | 46 | 0.301 |
| 47 | 47 | 0.308 |
| 48 | 48 | 0.15 |
| 49 | 49 | 0.732 |
| 5 | 5 | 0.886 |
| 50 | 50 | 0.985 |
| 51 | 51 | 0.351 |
| 52 | 52 | 0.464 |
| 53 | 53 | 0.77 |
| 54 | 54 | 0.253 |
| 55 | 55 | 0.141 |
| 56 | 56 | 0.103 |
| 57 | 57 | 0.114 |
| 58 | 58 | 0.747 |
| 59 | 59 | 0.0884 |
| 6 | 6 | 0.745 |
| 60 | 60 | 0.558 |
| 61 | 61 | 0.896 |
| 62 | 62 | 0.684 |
| 63 | 63 | 0.221 |
| 64 | 64 | 0.127 |
| 65 | 65 | 0.513 |
| 66 | 66 | 0.273 |
| 67 | 67 | 0.187 |
| 68 | 68 | 0.125 |
| 69 | 69 | 0.0117 |
| 7 | 7 | 0.347 |
| 70 | 70 | 0.405 |
| 71 | 71 | 0.297 |
| 72 | 72 | 0.679 |
| 73 | 73 | 0.121 |
| 74 | 74 | 0.967 |
| 75 | 75 | 0.988 |
| 76 | 76 | 0.26 |
| 77 | 77 | 0.00253 |
| 78 | 78 | 0.0477 |
| 79 | 79 | 0.627 |
| 8 | 8 | 0.0529 |
| 80 | 80 | 0.645 |
| 81 | 81 | 0.0347 |
| 82 | 82 | 0.0977 |
| 83 | 83 | 0.372 |
| 84 | 84 | 0.64 |
| 85 | 85 | 0.389 |
| 86 | 86 | 0.947 |
| 87 | 87 | 0.0351 |
| 88 | 88 | 0.725 |
| 89 | 89 | 0.0285 |
| 9 | 9 | 0.676 |
| 90 | 90 | 0.109 |
| 91 | 91 | 0.625 |
| 92 | 92 | 0.361 |
| 93 | 93 | 0.65 |
| 94 | 94 | 0.239 |
| 95 | 95 | 0.254 |
| 96 | 96 | 0.625 |
| 97 | 97 | 0.857 |
| 98 | 98 | 0.635 |
| 99 | 99 | 0.00829 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13072
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)
