FF:11303-117B7: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004968 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX008264;DRR009136;DRZ000561;DRZ001946;DRZ011911;DRZ013296 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002552 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000063 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Gingival%252c%2520donor5%2520%2528GFH3%2529.CNhs11952.11303-117B7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11303-117B7 | |id=FF:11303-117B7 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000063 | ||
|is_obsolete= | |||
|library_id=CNhs11952 | |||
|library_id_phase_based=2:CNhs11952 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11303 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11303 | |||
|name=Fibroblast - Gingival, donor5 (GFH3) | |name=Fibroblast - Gingival, donor5 (GFH3) | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11952,LSID836,release011,COMPLETED | |profile_hcage=CNhs11952,LSID836,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0479797036867934,0,0,0,0,0.0806804525651508,0,0.158938656576927,0.102040669979408,0,0,0,0.00380473787237298,0,0,0,0,0,0,0,0.174505758397014,0,0.562975703212199,0,0,0,0,0,0.0765478621289569,0,0,0.0415491686181521,0,0,0,0,0,0,0,0,0,0,0.0959594073735869,0,0.446998188656717,0.12628368315796,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.174505758397014,0,0.0959459703744299,0,-0.00103295386901825,0,0,0.14365485543844,0,0,0,0,0,0,0,0,0.0959594073735869,0,0,0,0,0,0,0,0,0,0,0,0.088364768607803,0,0,0.0570450722378223,0.173230893687391,0.087252879198507,0,0.0959594073735869,0.131804904798482,0.00695299168935165,0,0.39508192670348,0.0479797036867934,0.0959594073735869,-0.0980353512377064,0.208744723018123,0,0,0,0,0,0,0.0959594073735869,0,0,0,0,0,0,0,0,0,0,0.261775762857852,0.174505758397014,0,0,0.349536792151424,0.584881993957129,0,0,0.0959594073735869,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=18.5856 | |rna_weight_ug=18.5856 | ||
|sample_age=22 | |sample_age=22 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A | |sample_ethnicity=A | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.64506757301576e-209!GO:0005737;cytoplasm;1.01971565209032e-179!GO:0043231;intracellular membrane-bound organelle;6.71898698414922e-155!GO:0043227;membrane-bound organelle;1.01141461893331e-154!GO:0043226;organelle;1.01141461893331e-154!GO:0043229;intracellular organelle;3.40535409008983e-154!GO:0044444;cytoplasmic part;2.43536090984401e-127!GO:0044422;organelle part;3.77002817657644e-109!GO:0044446;intracellular organelle part;9.48351411693609e-108!GO:0005515;protein binding;1.40709193628583e-78!GO:0032991;macromolecular complex;3.64009368736184e-75!GO:0044238;primary metabolic process;1.08058315873903e-72!GO:0044237;cellular metabolic process;2.26415375496363e-72!GO:0043170;macromolecule metabolic process;5.54918530724422e-66!GO:0030529;ribonucleoprotein complex;1.42456039025542e-64!GO:0005739;mitochondrion;4.37384943775688e-56!GO:0043233;organelle lumen;2.36022054391969e-55!GO:0031974;membrane-enclosed lumen;2.36022054391969e-55!GO:0003723;RNA binding;4.80175105332353e-54!GO:0005634;nucleus;1.08985647807625e-52!GO:0044428;nuclear part;2.99206522804267e-51!GO:0019538;protein metabolic process;1.29690420921542e-49!GO:0031090;organelle membrane;9.52866931467449e-48!GO:0044260;cellular macromolecule metabolic process;9.6396522026557e-45!GO:0044267;cellular protein metabolic process;9.29291181775933e-44!GO:0016043;cellular component organization and biogenesis;9.5578088338226e-44!GO:0005840;ribosome;8.69392426068773e-42!GO:0015031;protein transport;8.24922887514005e-41!GO:0033036;macromolecule localization;2.02625017174649e-40!GO:0006412;translation;4.14887693899666e-40!GO:0043234;protein complex;9.56729013746854e-39!GO:0045184;establishment of protein localization;3.7816218322711e-38!GO:0008104;protein localization;5.3550867623833e-38!GO:0003735;structural constituent of ribosome;6.38870292699611e-37!GO:0044429;mitochondrial part;8.10592787801976e-37!GO:0005829;cytosol;9.17148291168155e-37!GO:0009058;biosynthetic process;8.14535042681285e-35!GO:0033279;ribosomal subunit;2.51143539214138e-33!GO:0043283;biopolymer metabolic process;4.62503450217634e-33!GO:0031967;organelle envelope;4.62503450217634e-33!GO:0044249;cellular biosynthetic process;5.66268931273119e-33!GO:0031975;envelope;6.99760131313903e-33!GO:0009059;macromolecule biosynthetic process;1.2395417933317e-32!GO:0006396;RNA processing;6.11132374944207e-31!GO:0031981;nuclear lumen;6.8127796777678e-31!GO:0046907;intracellular transport;1.4712700261555e-30!GO:0010467;gene expression;2.85693563185504e-29!GO:0016071;mRNA metabolic process;4.82218146694425e-27!GO:0006886;intracellular protein transport;1.61152219993565e-26!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.41337998173939e-25!GO:0065003;macromolecular complex assembly;2.06439420215723e-25!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.41089221097741e-25!GO:0008380;RNA splicing;1.12881841511329e-24!GO:0005740;mitochondrial envelope;5.2783519938565e-24!GO:0022607;cellular component assembly;5.39727141806853e-23!GO:0006996;organelle organization and biogenesis;5.70066562357148e-23!GO:0031966;mitochondrial membrane;9.03013008094201e-23!GO:0005783;endoplasmic reticulum;3.39671218280583e-22!GO:0006397;mRNA processing;3.50003290658549e-22!GO:0019866;organelle inner membrane;4.69272428492683e-22!GO:0005743;mitochondrial inner membrane;1.86719838646055e-20!GO:0012505;endomembrane system;1.96682069890561e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.50128894159098e-20!GO:0006119;oxidative phosphorylation;5.44091511272557e-20!GO:0043228;non-membrane-bound organelle;5.66801876857644e-20!GO:0043232;intracellular non-membrane-bound organelle;5.66801876857644e-20!GO:0051649;establishment of cellular localization;1.48555311758722e-19!GO:0044445;cytosolic part;1.70498315156055e-19!GO:0051641;cellular localization;1.80854536795337e-19!GO:0005654;nucleoplasm;2.13010740541198e-19!GO:0048770;pigment granule;3.65581057723519e-19!GO:0042470;melanosome;3.65581057723519e-19!GO:0005794;Golgi apparatus;8.79920609071455e-19!GO:0008134;transcription factor binding;2.32822380160994e-18!GO:0000166;nucleotide binding;4.19630382790233e-18!GO:0006457;protein folding;5.53032222849467e-18!GO:0016462;pyrophosphatase activity;1.17912327836864e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.27121136417212e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;1.8713380391302e-17!GO:0015935;small ribosomal subunit;2.59607879314878e-17!GO:0017111;nucleoside-triphosphatase activity;3.58684023634171e-17!GO:0015934;large ribosomal subunit;4.51657506778185e-17!GO:0005681;spliceosome;5.10101752663491e-17!GO:0044432;endoplasmic reticulum part;7.89871833307472e-17!GO:0044455;mitochondrial membrane part;1.00275480845976e-16!GO:0006512;ubiquitin cycle;1.02376042464897e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;2.66920589713459e-16!GO:0019941;modification-dependent protein catabolic process;5.26416637508954e-16!GO:0043632;modification-dependent macromolecule catabolic process;5.26416637508954e-16!GO:0044451;nucleoplasm part;5.56135883870528e-16!GO:0043285;biopolymer catabolic process;6.10265814356181e-16!GO:0044257;cellular protein catabolic process;8.8374651867941e-16!GO:0016874;ligase activity;1.02630513602792e-15!GO:0006511;ubiquitin-dependent protein catabolic process;1.30930129753189e-15!GO:0030163;protein catabolic process;1.68085105548395e-15!GO:0031980;mitochondrial lumen;2.00745797177089e-15!GO:0005759;mitochondrial matrix;2.00745797177089e-15!GO:0005746;mitochondrial respiratory chain;4.16284656467645e-15!GO:0044265;cellular macromolecule catabolic process;9.72331973675553e-15!GO:0051186;cofactor metabolic process;1.19427332619433e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.2397699435627e-14!GO:0006605;protein targeting;1.64801924236635e-14!GO:0022618;protein-RNA complex assembly;2.22289799727156e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.75407004483205e-14!GO:0006259;DNA metabolic process;2.87707928742696e-14!GO:0012501;programmed cell death;5.92035074311545e-14!GO:0009057;macromolecule catabolic process;8.88783073304294e-14!GO:0007049;cell cycle;1.00910137544467e-13!GO:0032553;ribonucleotide binding;1.8107796900573e-13!GO:0032555;purine ribonucleotide binding;1.8107796900573e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.85238783550695e-13!GO:0003954;NADH dehydrogenase activity;1.85238783550695e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.85238783550695e-13!GO:0003676;nucleic acid binding;2.10321399708953e-13!GO:0006915;apoptosis;2.18852107564586e-13!GO:0048193;Golgi vesicle transport;2.73809215678628e-13!GO:0017076;purine nucleotide binding;3.02441262008887e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.47616522862811e-13!GO:0048523;negative regulation of cellular process;5.11774679773908e-13!GO:0044248;cellular catabolic process;6.46655566964911e-13!GO:0043412;biopolymer modification;7.10475900477688e-13!GO:0016192;vesicle-mediated transport;8.88844380267864e-13!GO:0008135;translation factor activity, nucleic acid binding;9.26171681636515e-13!GO:0008219;cell death;9.78570411669536e-13!GO:0016265;death;9.78570411669536e-13!GO:0051082;unfolded protein binding;1.31183720584693e-12!GO:0003712;transcription cofactor activity;2.18487335745604e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.31417266663934e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.51933690268671e-12!GO:0005730;nucleolus;3.51933690268671e-12!GO:0005761;mitochondrial ribosome;3.9715285366519e-12!GO:0000313;organellar ribosome;3.9715285366519e-12!GO:0006464;protein modification process;5.44764036548553e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.61325518553819e-12!GO:0005793;ER-Golgi intermediate compartment;1.15558099215086e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.44326317523067e-11!GO:0045271;respiratory chain complex I;1.44326317523067e-11!GO:0005747;mitochondrial respiratory chain complex I;1.44326317523067e-11!GO:0006732;coenzyme metabolic process;1.46266016306637e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.7781494765699e-11!GO:0042773;ATP synthesis coupled electron transport;1.7781494765699e-11!GO:0005789;endoplasmic reticulum membrane;2.07292524170975e-11!GO:0016070;RNA metabolic process;2.28482870355537e-11!GO:0048519;negative regulation of biological process;3.89344945723539e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.45047086833113e-11!GO:0008639;small protein conjugating enzyme activity;1.08036100034722e-10!GO:0009055;electron carrier activity;1.73989227242663e-10!GO:0004842;ubiquitin-protein ligase activity;2.47501161472633e-10!GO:0043687;post-translational protein modification;3.29322579133719e-10!GO:0003743;translation initiation factor activity;3.51114612719917e-10!GO:0003924;GTPase activity;4.65980256514885e-10!GO:0019787;small conjugating protein ligase activity;4.79670976442039e-10!GO:0022402;cell cycle process;4.98949302436613e-10!GO:0005635;nuclear envelope;6.21798957942852e-10!GO:0006913;nucleocytoplasmic transport;7.04785362577936e-10!GO:0005524;ATP binding;7.26208238776536e-10!GO:0051169;nuclear transport;1.24014205969104e-09!GO:0032559;adenyl ribonucleotide binding;1.34022189578202e-09!GO:0050794;regulation of cellular process;1.39492797916177e-09!GO:0006366;transcription from RNA polymerase II promoter;1.54812555730362e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.26502343538409e-09!GO:0030554;adenyl nucleotide binding;2.82115944232796e-09!GO:0006413;translational initiation;2.87851948178661e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;4.37407128115384e-09!GO:0000375;RNA splicing, via transesterification reactions;4.37407128115384e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.37407128115384e-09!GO:0043067;regulation of programmed cell death;4.65262749831897e-09!GO:0042981;regulation of apoptosis;5.19758021081988e-09!GO:0031965;nuclear membrane;5.31442210835679e-09!GO:0051726;regulation of cell cycle;6.33207371073832e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.4738581419501e-09!GO:0005768;endosome;6.62730231621675e-09!GO:0009259;ribonucleotide metabolic process;8.14190166936741e-09!GO:0000074;regulation of progression through cell cycle;9.03899421603673e-09!GO:0006446;regulation of translational initiation;9.12625384155408e-09!GO:0017038;protein import;1.337798373964e-08!GO:0016881;acid-amino acid ligase activity;1.45134767955565e-08!GO:0009150;purine ribonucleotide metabolic process;1.59304353038401e-08!GO:0006163;purine nucleotide metabolic process;2.15674275831357e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.35902442729946e-08!GO:0008565;protein transporter activity;3.03963100651059e-08!GO:0009141;nucleoside triphosphate metabolic process;3.08709509831781e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.10611658350612e-08!GO:0009056;catabolic process;3.39455656312359e-08!GO:0005788;endoplasmic reticulum lumen;4.62980568142825e-08!GO:0044431;Golgi apparatus part;4.71592648897435e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.97929762207908e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.38731266368905e-08!GO:0009144;purine nucleoside triphosphate metabolic process;5.38731266368905e-08!GO:0009152;purine ribonucleotide biosynthetic process;5.52628532600185e-08!GO:0015986;ATP synthesis coupled proton transport;6.34321407185949e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.34321407185949e-08!GO:0009260;ribonucleotide biosynthetic process;7.12902183539737e-08!GO:0006164;purine nucleotide biosynthetic process;7.80383070286815e-08!GO:0019829;cation-transporting ATPase activity;7.82812769706067e-08!GO:0006461;protein complex assembly;9.27589326841478e-08!GO:0044453;nuclear membrane part;9.37155473226032e-08!GO:0008361;regulation of cell size;9.66585475796302e-08!GO:0051246;regulation of protein metabolic process;9.73463536041536e-08!GO:0016049;cell growth;1.03840746144523e-07!GO:0016604;nuclear body;1.07066914414456e-07!GO:0045333;cellular respiration;1.11957140998539e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.25664727033284e-07!GO:0009060;aerobic respiration;1.3709345556469e-07!GO:0006974;response to DNA damage stimulus;1.46758094096836e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.50310726908196e-07!GO:0045786;negative regulation of progression through cell cycle;1.71276717319984e-07!GO:0009142;nucleoside triphosphate biosynthetic process;1.83475041243323e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.83475041243323e-07!GO:0006916;anti-apoptosis;1.8644334521277e-07!GO:0016491;oxidoreductase activity;1.9742653701513e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.03210898003202e-07!GO:0046034;ATP metabolic process;2.04110114603229e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.11089794129529e-07!GO:0000278;mitotic cell cycle;2.15805505446876e-07!GO:0030120;vesicle coat;2.15976694310824e-07!GO:0030662;coated vesicle membrane;2.15976694310824e-07!GO:0042623;ATPase activity, coupled;2.21859504497075e-07!GO:0005773;vacuole;2.33095222593681e-07!GO:0051188;cofactor biosynthetic process;2.45886672973352e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.56443020566491e-07!GO:0043069;negative regulation of programmed cell death;2.57791126537714e-07!GO:0016564;transcription repressor activity;2.99648305662963e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.09583609285677e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.09583609285677e-07!GO:0048522;positive regulation of cellular process;3.14036539195089e-07!GO:0050789;regulation of biological process;3.33240268140266e-07!GO:0031324;negative regulation of cellular metabolic process;3.73521362851375e-07!GO:0016887;ATPase activity;3.80026198072846e-07!GO:0003714;transcription corepressor activity;4.30730449641928e-07!GO:0043066;negative regulation of apoptosis;4.40594637094595e-07!GO:0006323;DNA packaging;4.78315468649265e-07!GO:0001558;regulation of cell growth;5.00551578679431e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.06093085267534e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.06093085267534e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.06093085267534e-07!GO:0051276;chromosome organization and biogenesis;5.10588367918099e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.20418085423308e-07!GO:0042254;ribosome biogenesis and assembly;5.58466446557215e-07!GO:0005839;proteasome core complex (sensu Eukaryota);5.76984058665568e-07!GO:0048475;coated membrane;7.45165073764698e-07!GO:0030117;membrane coat;7.45165073764698e-07!GO:0009117;nucleotide metabolic process;7.66999684893748e-07!GO:0016469;proton-transporting two-sector ATPase complex;8.88386811987691e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.34123670664098e-07!GO:0031988;membrane-bound vesicle;9.72930151347166e-07!GO:0043038;amino acid activation;9.93725535771445e-07!GO:0006418;tRNA aminoacylation for protein translation;9.93725535771445e-07!GO:0043039;tRNA aminoacylation;9.93725535771445e-07!GO:0006754;ATP biosynthetic process;1.02782505825155e-06!GO:0006753;nucleoside phosphate metabolic process;1.02782505825155e-06!GO:0005525;GTP binding;1.39616856462729e-06!GO:0006399;tRNA metabolic process;1.54508620570224e-06!GO:0000323;lytic vacuole;1.86933272555286e-06!GO:0005764;lysosome;1.86933272555286e-06!GO:0031252;leading edge;1.86933272555286e-06!GO:0031982;vesicle;2.55433651116345e-06!GO:0051170;nuclear import;2.56764856040519e-06!GO:0000151;ubiquitin ligase complex;2.64140890770951e-06!GO:0065004;protein-DNA complex assembly;2.83544596845542e-06!GO:0006099;tricarboxylic acid cycle;3.16921157000839e-06!GO:0046356;acetyl-CoA catabolic process;3.16921157000839e-06!GO:0009892;negative regulation of metabolic process;3.34910315124887e-06!GO:0051187;cofactor catabolic process;3.40380920514587e-06!GO:0031410;cytoplasmic vesicle;3.43607780964051e-06!GO:0006606;protein import into nucleus;3.82700808994568e-06!GO:0000139;Golgi membrane;4.0808682688219e-06!GO:0006793;phosphorus metabolic process;4.58883733271851e-06!GO:0006796;phosphate metabolic process;4.58883733271851e-06!GO:0016607;nuclear speck;4.60032616747002e-06!GO:0004298;threonine endopeptidase activity;4.86361469851865e-06!GO:0009108;coenzyme biosynthetic process;5.02375409211321e-06!GO:0004386;helicase activity;5.50304382874928e-06!GO:0009109;coenzyme catabolic process;5.81431946815047e-06!GO:0044440;endosomal part;6.43956655632103e-06!GO:0010008;endosome membrane;6.43956655632103e-06!GO:0005643;nuclear pore;6.46798186639126e-06!GO:0032446;protein modification by small protein conjugation;6.90120209126083e-06!GO:0007005;mitochondrion organization and biogenesis;6.92110664981231e-06!GO:0005798;Golgi-associated vesicle;6.96086370182268e-06!GO:0032561;guanyl ribonucleotide binding;7.05480218309264e-06!GO:0019001;guanyl nucleotide binding;7.05480218309264e-06!GO:0005770;late endosome;7.31690521673518e-06!GO:0016787;hydrolase activity;7.73667520523058e-06!GO:0051789;response to protein stimulus;8.13458694872354e-06!GO:0006986;response to unfolded protein;8.13458694872354e-06!GO:0006084;acetyl-CoA metabolic process;8.171903082836e-06!GO:0016567;protein ubiquitination;8.99469455790257e-06!GO:0003713;transcription coactivator activity;9.13146169271374e-06!GO:0065002;intracellular protein transport across a membrane;9.39212481086616e-06!GO:0006333;chromatin assembly or disassembly;1.20041014193808e-05!GO:0005694;chromosome;1.22004276830693e-05!GO:0005667;transcription factor complex;1.25403319281557e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.32742405089889e-05!GO:0045259;proton-transporting ATP synthase complex;1.3337081538876e-05!GO:0007243;protein kinase cascade;1.39190464565446e-05!GO:0008026;ATP-dependent helicase activity;1.50098140080969e-05!GO:0016310;phosphorylation;1.58357964082371e-05!GO:0000785;chromatin;1.58357964082371e-05!GO:0048518;positive regulation of biological process;1.88815012500068e-05!GO:0016481;negative regulation of transcription;1.92239432242326e-05!GO:0006752;group transfer coenzyme metabolic process;1.95470752338598e-05!GO:0006281;DNA repair;2.00101690764242e-05!GO:0009719;response to endogenous stimulus;2.03336635565787e-05!GO:0045454;cell redox homeostasis;2.37629651396315e-05!GO:0003697;single-stranded DNA binding;2.56907513676838e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.66608635868291e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.86352955688997e-05!GO:0006613;cotranslational protein targeting to membrane;3.06964306068991e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.59759108114095e-05!GO:0005762;mitochondrial large ribosomal subunit;4.09035391508101e-05!GO:0000315;organellar large ribosomal subunit;4.09035391508101e-05!GO:0046930;pore complex;4.15365058780802e-05!GO:0006091;generation of precursor metabolites and energy;4.15365058780802e-05!GO:0008654;phospholipid biosynthetic process;4.59003236126e-05!GO:0030133;transport vesicle;4.74493608146686e-05!GO:0016740;transferase activity;5.35517534731189e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.42374464220357e-05!GO:0044427;chromosomal part;5.88421106850909e-05!GO:0040008;regulation of growth;5.88750126447257e-05!GO:0016563;transcription activator activity;6.41389362258666e-05!GO:0043566;structure-specific DNA binding;6.46429512444056e-05!GO:0030867;rough endoplasmic reticulum membrane;7.31119431162567e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.31119431162567e-05!GO:0000245;spliceosome assembly;7.60286428060491e-05!GO:0030036;actin cytoskeleton organization and biogenesis;8.2635943064287e-05!GO:0005769;early endosome;9.4129034099535e-05!GO:0016568;chromatin modification;0.00010407171659297!GO:0005905;coated pit;0.000116719936216954!GO:0015630;microtubule cytoskeleton;0.000159189017845559!GO:0043623;cellular protein complex assembly;0.000173056714053718!GO:0005791;rough endoplasmic reticulum;0.000175966026210457!GO:0006403;RNA localization;0.000178899996119982!GO:0006334;nucleosome assembly;0.000185438493396456!GO:0050657;nucleic acid transport;0.000190558986396696!GO:0051236;establishment of RNA localization;0.000190558986396696!GO:0050658;RNA transport;0.000190558986396696!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000196223586804037!GO:0005048;signal sequence binding;0.000205502782593415!GO:0016859;cis-trans isomerase activity;0.00020898305526004!GO:0019843;rRNA binding;0.000229782934401553!GO:0019899;enzyme binding;0.000231148981930952!GO:0065007;biological regulation;0.000250472041970028!GO:0022403;cell cycle phase;0.000274040474498819!GO:0033116;ER-Golgi intermediate compartment membrane;0.000283727968295457!GO:0006612;protein targeting to membrane;0.000290911556627171!GO:0048468;cell development;0.000293476791537792!GO:0031968;organelle outer membrane;0.00029368264106198!GO:0019867;outer membrane;0.000303095325863607!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000303095325863607!GO:0006260;DNA replication;0.000312768705646611!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000322413753586598!GO:0006364;rRNA processing;0.00034166221498815!GO:0051427;hormone receptor binding;0.00034166221498815!GO:0016853;isomerase activity;0.00034719489533229!GO:0031497;chromatin assembly;0.000387252323091555!GO:0004576;oligosaccharyl transferase activity;0.000416920295323897!GO:0008250;oligosaccharyl transferase complex;0.000438477016761848!GO:0007050;cell cycle arrest;0.000496054209126615!GO:0005885;Arp2/3 protein complex;0.000499044202253184!GO:0043021;ribonucleoprotein binding;0.000499552741520609!GO:0051301;cell division;0.00054342986600071!GO:0016072;rRNA metabolic process;0.000548185719343421!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000557484691956553!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000567018099357429!GO:0051329;interphase of mitotic cell cycle;0.000570378788545442!GO:0030663;COPI coated vesicle membrane;0.000584574862451294!GO:0030126;COPI vesicle coat;0.000584574862451294!GO:0016779;nucleotidyltransferase activity;0.000622883925055894!GO:0003724;RNA helicase activity;0.000627743719322058!GO:0035257;nuclear hormone receptor binding;0.000662255532364473!GO:0030029;actin filament-based process;0.000726833652750009!GO:0005741;mitochondrial outer membrane;0.000746896775221274!GO:0000087;M phase of mitotic cell cycle;0.00078592447946542!GO:0044262;cellular carbohydrate metabolic process;0.0008103030076462!GO:0000314;organellar small ribosomal subunit;0.000830811301296787!GO:0005763;mitochondrial small ribosomal subunit;0.000830811301296787!GO:0007067;mitosis;0.000864021252557688!GO:0005813;centrosome;0.000936945005181164!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00110339576330372!GO:0045892;negative regulation of transcription, DNA-dependent;0.00112462713842934!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0011555618020976!GO:0015399;primary active transmembrane transporter activity;0.0011555618020976!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00122762111589847!GO:0051920;peroxiredoxin activity;0.00123817878963656!GO:0009967;positive regulation of signal transduction;0.00124311132101827!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0013882683251581!GO:0007010;cytoskeleton organization and biogenesis;0.00139334116407496!GO:0030137;COPI-coated vesicle;0.00142807101533022!GO:0048471;perinuclear region of cytoplasm;0.0014464062509706!GO:0019222;regulation of metabolic process;0.00152171478929087!GO:0009165;nucleotide biosynthetic process;0.00153493280962947!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00153709840124516!GO:0006891;intra-Golgi vesicle-mediated transport;0.00154042022012384!GO:0030132;clathrin coat of coated pit;0.0015824348068243!GO:0031072;heat shock protein binding;0.00171577944522605!GO:0030027;lamellipodium;0.00174092905405162!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00174622260747855!GO:0046474;glycerophospholipid biosynthetic process;0.00176243681495933!GO:0051028;mRNA transport;0.00183506704970708!GO:0016044;membrane organization and biogenesis;0.00184628785488473!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00184841722151277!GO:0018196;peptidyl-asparagine modification;0.00184841722151277!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00184841722151277!GO:0005815;microtubule organizing center;0.00185701915274002!GO:0008092;cytoskeletal protein binding;0.001929822370732!GO:0043065;positive regulation of apoptosis;0.00196131242346282!GO:0043488;regulation of mRNA stability;0.00209451423217989!GO:0043487;regulation of RNA stability;0.00209451423217989!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00217970846328309!GO:0051128;regulation of cellular component organization and biogenesis;0.00223250303868114!GO:0043068;positive regulation of programmed cell death;0.00235834030660541!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00238191137570666!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00238191137570666!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00238191137570666!GO:0051325;interphase;0.00238205677088675!GO:0045941;positive regulation of transcription;0.00238814343325989!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00249524224345355!GO:0007040;lysosome organization and biogenesis;0.00255488843378414!GO:0043681;protein import into mitochondrion;0.00262043814480475!GO:0022890;inorganic cation transmembrane transporter activity;0.00265881356140455!GO:0016197;endosome transport;0.00297741089512331!GO:0045792;negative regulation of cell size;0.00306431446667473!GO:0030308;negative regulation of cell growth;0.0032137639045581!GO:0003729;mRNA binding;0.00323744875964611!GO:0045893;positive regulation of transcription, DNA-dependent;0.00332815087192312!GO:0001726;ruffle;0.00349121883699395!GO:0007264;small GTPase mediated signal transduction;0.00362296180883943!GO:0051168;nuclear export;0.00365161290900057!GO:0043284;biopolymer biosynthetic process;0.00372503440679231!GO:0019752;carboxylic acid metabolic process;0.00385212662467685!GO:0007033;vacuole organization and biogenesis;0.00392398485075731!GO:0006082;organic acid metabolic process;0.00399404686462421!GO:0051252;regulation of RNA metabolic process;0.00405429319272503!GO:0048500;signal recognition particle;0.00426811876919269!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00431234740308931!GO:0008632;apoptotic program;0.00480227705643726!GO:0006979;response to oxidative stress;0.00481931803572467!GO:0048487;beta-tubulin binding;0.00487019169796983!GO:0008154;actin polymerization and/or depolymerization;0.00488347099842958!GO:0008139;nuclear localization sequence binding;0.00494381082349957!GO:0005581;collagen;0.00502425290310401!GO:0043492;ATPase activity, coupled to movement of substances;0.00502860859896195!GO:0008186;RNA-dependent ATPase activity;0.00521018300119815!GO:0008047;enzyme activator activity;0.00522470829572275!GO:0000059;protein import into nucleus, docking;0.00534839552719286!GO:0006818;hydrogen transport;0.00545709467976955!GO:0015992;proton transport;0.00552863474964121!GO:0046489;phosphoinositide biosynthetic process;0.00561449142580376!GO:0030176;integral to endoplasmic reticulum membrane;0.00581761905505323!GO:0030659;cytoplasmic vesicle membrane;0.00581761905505323!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00584862513705096!GO:0003899;DNA-directed RNA polymerase activity;0.00588189238235228!GO:0030134;ER to Golgi transport vesicle;0.00631708983501892!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00642473228359801!GO:0004674;protein serine/threonine kinase activity;0.00671500683513207!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00710374094289828!GO:0006509;membrane protein ectodomain proteolysis;0.00733848579161613!GO:0033619;membrane protein proteolysis;0.00733848579161613!GO:0065009;regulation of a molecular function;0.00733848579161613!GO:0017166;vinculin binding;0.00737191823540833!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00750368194176831!GO:0015002;heme-copper terminal oxidase activity;0.00750368194176831!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00750368194176831!GO:0004129;cytochrome-c oxidase activity;0.00750368194176831!GO:0030127;COPII vesicle coat;0.00750368194176831!GO:0012507;ER to Golgi transport vesicle membrane;0.00750368194176831!GO:0042802;identical protein binding;0.00754214922807004!GO:0046467;membrane lipid biosynthetic process;0.00762286524796609!GO:0006402;mRNA catabolic process;0.00765704677718086!GO:0005774;vacuolar membrane;0.00777462769768344!GO:0030041;actin filament polymerization;0.00779368785083435!GO:0030658;transport vesicle membrane;0.00784861153410044!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00811330753468663!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00813336177686215!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00829083821916984!GO:0030118;clathrin coat;0.00829083821916984!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00848466918584343!GO:0006626;protein targeting to mitochondrion;0.00851275758210735!GO:0006383;transcription from RNA polymerase III promoter;0.00872155226919931!GO:0000082;G1/S transition of mitotic cell cycle;0.00889952117517829!GO:0006414;translational elongation;0.00906587188912003!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00922138831239988!GO:0045047;protein targeting to ER;0.00922138831239988!GO:0003690;double-stranded DNA binding;0.00937756579840082!GO:0030145;manganese ion binding;0.00980999632148792!GO:0030521;androgen receptor signaling pathway;0.00998968952590988!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0101468244991709!GO:0006595;polyamine metabolic process;0.0101777410646399!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0102120526325812!GO:0004177;aminopeptidase activity;0.0103217099812492!GO:0007006;mitochondrial membrane organization and biogenesis;0.010331467029847!GO:0031543;peptidyl-proline dioxygenase activity;0.0106107977461424!GO:0035258;steroid hormone receptor binding;0.0108710291553!GO:0051059;NF-kappaB binding;0.0111688661988408!GO:0006650;glycerophospholipid metabolic process;0.0116005359985533!GO:0030833;regulation of actin filament polymerization;0.011890332352487!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.012188957870689!GO:0003746;translation elongation factor activity;0.0122589472728689!GO:0046519;sphingoid metabolic process;0.0124949737834703!GO:0004004;ATP-dependent RNA helicase activity;0.0126147382502886!GO:0045926;negative regulation of growth;0.0127774893344777!GO:0006790;sulfur metabolic process;0.0127774893344777!GO:0031625;ubiquitin protein ligase binding;0.0127809327776267!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0129594921341227!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0129594921341227!GO:0005869;dynactin complex;0.0129594921341227!GO:0008234;cysteine-type peptidase activity;0.0130225119258101!GO:0031418;L-ascorbic acid binding;0.0131701296925446!GO:0008484;sulfuric ester hydrolase activity;0.0136380064501849!GO:0050811;GABA receptor binding;0.0136380064501849!GO:0045936;negative regulation of phosphate metabolic process;0.0136936042506797!GO:0051287;NAD binding;0.0137190259032073!GO:0016363;nuclear matrix;0.0139445319931186!GO:0051540;metal cluster binding;0.0141504600771328!GO:0051536;iron-sulfur cluster binding;0.0141504600771328!GO:0044420;extracellular matrix part;0.0141504600771328!GO:0006917;induction of apoptosis;0.0141504600771328!GO:0044433;cytoplasmic vesicle part;0.0142767646684512!GO:0030880;RNA polymerase complex;0.0144125128132524!GO:0006839;mitochondrial transport;0.014493754724831!GO:0000287;magnesium ion binding;0.0147264044757462!GO:0019798;procollagen-proline dioxygenase activity;0.0147264044757462!GO:0006740;NADPH regeneration;0.0150027687903644!GO:0006098;pentose-phosphate shunt;0.0150027687903644!GO:0006352;transcription initiation;0.0155955882400449!GO:0051087;chaperone binding;0.0157585565566384!GO:0030660;Golgi-associated vesicle membrane;0.0160416917510232!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0163361382336703!GO:0033559;unsaturated fatty acid metabolic process;0.0163665086928851!GO:0006636;unsaturated fatty acid biosynthetic process;0.0163665086928851!GO:0031529;ruffle organization and biogenesis;0.0163865840122492!GO:0045045;secretory pathway;0.0165714528653764!GO:0005520;insulin-like growth factor binding;0.017283782751804!GO:0030518;steroid hormone receptor signaling pathway;0.017421408985948!GO:0005862;muscle thin filament tropomyosin;0.0175407984577647!GO:0031902;late endosome membrane;0.0176675770912238!GO:0008610;lipid biosynthetic process;0.0178403374704272!GO:0000279;M phase;0.0178403374704272!GO:0005637;nuclear inner membrane;0.0181105203169199!GO:0044437;vacuolar part;0.0182068141640484!GO:0006354;RNA elongation;0.0182542740539651!GO:0012502;induction of programmed cell death;0.0183198112126409!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0184932568743481!GO:0033043;regulation of organelle organization and biogenesis;0.0184932568743481!GO:0006950;response to stress;0.0185694232322924!GO:0008312;7S RNA binding;0.0186591453132563!GO:0043022;ribosome binding;0.0194125088002918!GO:0007034;vacuolar transport;0.0200438075691592!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0203670649322543!GO:0030032;lamellipodium biogenesis;0.0205079100510577!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0211580182293087!GO:0005096;GTPase activator activity;0.0212898725766395!GO:0005765;lysosomal membrane;0.0214371743283428!GO:0000049;tRNA binding;0.0217367727565032!GO:0000902;cell morphogenesis;0.0219000457041057!GO:0032989;cellular structure morphogenesis;0.0219000457041057!GO:0051101;regulation of DNA binding;0.0223357883399415!GO:0007569;cell aging;0.0224086048160538!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0225271623485723!GO:0006401;RNA catabolic process;0.022853948503582!GO:0031901;early endosome membrane;0.023023954595155!GO:0050681;androgen receptor binding;0.0235273667485867!GO:0030503;regulation of cell redox homeostasis;0.0238859113932698!GO:0008637;apoptotic mitochondrial changes;0.0243631744371844!GO:0006611;protein export from nucleus;0.0247237684957602!GO:0006672;ceramide metabolic process;0.0247623925719343!GO:0012506;vesicle membrane;0.0248834186904906!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0250058858972014!GO:0030119;AP-type membrane coat adaptor complex;0.0256367259811856!GO:0007242;intracellular signaling cascade;0.0259188470945687!GO:0035035;histone acetyltransferase binding;0.0259254969753283!GO:0007160;cell-matrix adhesion;0.0262585569702046!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0262585569702046!GO:0000428;DNA-directed RNA polymerase complex;0.0262585569702046!GO:0051270;regulation of cell motility;0.026483320824757!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0271629940629926!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0271629940629926!GO:0016126;sterol biosynthetic process;0.027573590717802!GO:0031589;cell-substrate adhesion;0.0276676707749048!GO:0008180;signalosome;0.0281508320220026!GO:0005583;fibrillar collagen;0.0281668653535507!GO:0004722;protein serine/threonine phosphatase activity;0.0282111837446619!GO:0008022;protein C-terminus binding;0.0283343611597222!GO:0042326;negative regulation of phosphorylation;0.0290228183734915!GO:0006497;protein amino acid lipidation;0.0298770922581808!GO:0008629;induction of apoptosis by intracellular signals;0.0303073406511388!GO:0004228;gelatinase A activity;0.0303073406511388!GO:0001955;blood vessel maturation;0.0303073406511388!GO:0046483;heterocycle metabolic process;0.0304447107814353!GO:0008283;cell proliferation;0.0307697472030844!GO:0006607;NLS-bearing substrate import into nucleus;0.0307802335297337!GO:0000786;nucleosome;0.0310817770423391!GO:0045334;clathrin-coated endocytic vesicle;0.031544481976296!GO:0015631;tubulin binding;0.0327408507116667!GO:0005832;chaperonin-containing T-complex;0.0330196320123403!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0338780030196724!GO:0048144;fibroblast proliferation;0.033886017532126!GO:0048145;regulation of fibroblast proliferation;0.033886017532126!GO:0022415;viral reproductive process;0.0344947537483813!GO:0005819;spindle;0.0347899862132337!GO:0040029;regulation of gene expression, epigenetic;0.0348609082562813!GO:0007041;lysosomal transport;0.035012417960523!GO:0030384;phosphoinositide metabolic process;0.0352612519264365!GO:0016251;general RNA polymerase II transcription factor activity;0.0352716687458147!GO:0032906;transforming growth factor-beta2 production;0.0358738077595082!GO:0032909;regulation of transforming growth factor-beta2 production;0.0358738077595082!GO:0006739;NADP metabolic process;0.0363550460650862!GO:0003684;damaged DNA binding;0.0366145734751113!GO:0006520;amino acid metabolic process;0.0380439851769967!GO:0006506;GPI anchor biosynthetic process;0.0388817563857852!GO:0006897;endocytosis;0.0389092750356484!GO:0010324;membrane invagination;0.0389092750356484!GO:0006984;ER-nuclear signaling pathway;0.039006270445306!GO:0016584;nucleosome positioning;0.039006270445306!GO:0000096;sulfur amino acid metabolic process;0.039373522357013!GO:0008383;manganese superoxide dismutase activity;0.0393980658805617!GO:0001315;age-dependent response to reactive oxygen species;0.0393980658805617!GO:0009966;regulation of signal transduction;0.0395480536952881!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0401256403147701!GO:0009615;response to virus;0.0403402026661866!GO:0006118;electron transport;0.0403402026661866!GO:0008286;insulin receptor signaling pathway;0.04065309150219!GO:0051235;maintenance of localization;0.0410049473955543!GO:0000339;RNA cap binding;0.04108075763745!GO:0033673;negative regulation of kinase activity;0.04108075763745!GO:0006469;negative regulation of protein kinase activity;0.04108075763745!GO:0030984;kininogen binding;0.0413027542993803!GO:0004213;cathepsin B activity;0.0413027542993803!GO:0016791;phosphoric monoester hydrolase activity;0.0413273399252336!GO:0046426;negative regulation of JAK-STAT cascade;0.0423370959106798!GO:0048146;positive regulation of fibroblast proliferation;0.042521101924549!GO:0030125;clathrin vesicle coat;0.042521101924549!GO:0030665;clathrin coated vesicle membrane;0.042521101924549!GO:0006778;porphyrin metabolic process;0.0427931115483223!GO:0033013;tetrapyrrole metabolic process;0.0427931115483223!GO:0030131;clathrin adaptor complex;0.043000300375258!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0434182114690497!GO:0003779;actin binding;0.0435868657993796!GO:0016272;prefoldin complex;0.0436480868828686!GO:0001952;regulation of cell-matrix adhesion;0.0436513722820893!GO:0007021;tubulin folding;0.0439889308196999!GO:0004860;protein kinase inhibitor activity;0.0440790326482239!GO:0030508;thiol-disulfide exchange intermediate activity;0.0451477644817876!GO:0000792;heterochromatin;0.0460844445509558!GO:0005801;cis-Golgi network;0.0460844445509558!GO:0022408;negative regulation of cell-cell adhesion;0.0461608583335985!GO:0005684;U2-dependent spliceosome;0.0461951633930913!GO:0031272;regulation of pseudopodium formation;0.0471004503013322!GO:0031269;pseudopodium formation;0.0471004503013322!GO:0031344;regulation of cell projection organization and biogenesis;0.0471004503013322!GO:0031268;pseudopodium organization and biogenesis;0.0471004503013322!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0471004503013322!GO:0031274;positive regulation of pseudopodium formation;0.0471004503013322!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.047982459651379!GO:0004784;superoxide dismutase activity;0.047982459651379!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0480660325210513!GO:0018193;peptidyl-amino acid modification;0.0480778896540914!GO:0008538;proteasome activator activity;0.0483023815209812!GO:0006505;GPI anchor metabolic process;0.0484601105586548!GO:0006892;post-Golgi vesicle-mediated transport;0.0486673286636324!GO:0016971;flavin-linked sulfhydryl oxidase activity;0.0489079438517318!GO:0051539;4 iron, 4 sulfur cluster binding;0.0495029214567923!GO:0030911;TPR domain binding;0.0495029214567923!GO:0051098;regulation of binding;0.0497347800895361!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0497586393121699!GO:0003756;protein disulfide isomerase activity;0.0497586393121699!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0497586393121699!GO:0006289;nucleotide-excision repair;0.0499998924334972 | |||
|sample_id=11303 | |sample_id=11303 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=gum | |sample_tissue=gum | ||
|top_motifs=ESR1:2.51385073123;FOXL1:2.34204297501;ALX4:2.26878128812;UFEwm:2.20299616277;NKX2-2,8:1.79220764054;ZNF238:1.68589181735;RXR{A,B,G}:1.59847237134;TFAP4:1.54188751198;GLI1..3:1.53524945471;PAX1,9:1.53470988622;EVI1:1.52213946846;EBF1:1.46748839727;NKX3-1:1.46094179832;KLF4:1.38988062105;MYBL2:1.33872927736;HMGA1,2:1.33830687267;HES1:1.25104055001;SPZ1:1.21243658876;TFAP2{A,C}:1.12099483623;TFCP2:1.07119963274;MAZ:1.06317002505;TAL1_TCF{3,4,12}:1.05937257389;IRF1,2:1.04810512897;TP53:1.03665158112;PATZ1:1.01255952634;NANOG{mouse}:0.979078307243;NFIX:0.969253245976;TEAD1:0.930997370225;NKX6-1,2:0.918461150725;FOXD3:0.910661495959;ZNF423:0.875885915229;GATA4:0.870638962492;AIRE:0.858169563549;HAND1,2:0.804269907227;GZF1:0.796203478278;TFAP2B:0.792225024965;MTE{core}:0.783445930404;XCPE1{core}:0.747363334838;TFDP1:0.727360847373;PAX5:0.69965832024;NFATC1..3:0.697099902076;FOXO1,3,4:0.689780982821;ATF6:0.682096664502;NFE2L1:0.678531005544;GTF2A1,2:0.678162147297;ZIC1..3:0.663188696882;HIC1:0.662590511826;MZF1:0.643139970953;GTF2I:0.636173205024;MAFB:0.634017902013;HMX1:0.617875887301;ZBTB6:0.603127131546;TLX1..3_NFIC{dimer}:0.599402576926;SRF:0.599349279695;MTF1:0.59344061978;LHX3,4:0.585078972586;EGR1..3:0.577068981385;GCM1,2:0.507087570035;RREB1:0.476602910074;XBP1:0.466453351062;NR6A1:0.452313650276;TBX4,5:0.389024550631;RXRA_VDR{dimer}:0.386011734;PAX4:0.347517614781;NR3C1:0.344728890374;IRF7:0.341500933966;IKZF1:0.338855215966;bHLH_family:0.32843535431;PRDM1:0.311846121022;GFI1B:0.309572857303;HOX{A4,D4}:0.257727151583;MYB:0.253616922626;SP1:0.240195652837;MYFfamily:0.211927873402;HOX{A6,A7,B6,B7}:0.198184051824;NFE2L2:0.172899801976;NHLH1,2:0.157265560719;CDC5L:0.156810518569;ZFP161:0.153117459338;TOPORS:0.142360023246;PPARG:0.127562789073;NKX2-1,4:0.126066380021;NKX3-2:0.120296350886;NR1H4:0.100676181377;STAT2,4,6:0.0787412106936;STAT5{A,B}:0.0685824412742;HLF:0.0658420310768;PAX3,7:0.0566612770549;BPTF:0.0553559009334;REST:0.0463037706596;MED-1{core}:0.0382307711574;ZNF384:0.0347012594229;CEBPA,B_DDIT3:0.0224286338078;SREBF1,2:0.0186416465383;SMAD1..7,9:0.00533304350804;ARID5B:-0.041574426148;EN1,2:-0.0464579666107;YY1:-0.0555042678948;TBP:-0.0783299451405;SOX17:-0.117980364796;SOX5:-0.144024267615;TEF:-0.145975018861;BACH2:-0.170850943309;NFKB1_REL_RELA:-0.191914488708;DBP:-0.194963710666;DMAP1_NCOR{1,2}_SMARC:-0.203019894845;GFI1:-0.205987021314;LMO2:-0.214539957792;NFE2:-0.221980965546;HNF4A_NR2F1,2:-0.235989483772;HNF1A:-0.238868743174;CREB1:-0.260348700096;NKX2-3_NKX2-5:-0.261064164588;MEF2{A,B,C,D}:-0.266794179782;RBPJ:-0.278132860633;FOS_FOS{B,L1}_JUN{B,D}:-0.282145980957;HIF1A:-0.306852132882;PAX8:-0.309490906242;HOXA9_MEIS1:-0.310464489552;FOXP1:-0.311965602172;ZNF148:-0.322187124568;ATF4:-0.332071110797;POU3F1..4:-0.347248250925;PITX1..3:-0.349820710502;NR5A1,2:-0.353762707039;RUNX1..3:-0.354111626924;ATF5_CREB3:-0.355034077049;CDX1,2,4:-0.379140061274;FOX{D1,D2}:-0.388015998755;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.418429908603;ZNF143:-0.423171836644;RFX1:-0.427239220675;PDX1:-0.439725944379;RFX2..5_RFXANK_RFXAP:-0.451353503495;FOSL2:-0.459740648943;HOX{A5,B5}:-0.460401717307;HBP1_HMGB_SSRP1_UBTF:-0.46204982912;IKZF2:-0.49451660663;AHR_ARNT_ARNT2:-0.515936579282;T:-0.516996977052;E2F1..5:-0.527210974164;RORA:-0.538501572243;FOX{F1,F2,J1}:-0.541048149804;ONECUT1,2:-0.545259098208;FOXA2:-0.558029034429;BREu{core}:-0.576581623224;FOX{I1,J2}:-0.582026965793;POU5F1:-0.588698567503;POU6F1:-0.591877004168;JUN:-0.603221497122;ELK1,4_GABP{A,B1}:-0.613488107849;AR:-0.620834783723;PAX2:-0.622446926846;ETS1,2:-0.638871653041;FOXM1:-0.657389852328;NFIL3:-0.675876776907;SPIB:-0.679031913041;POU1F1:-0.682564194284;NRF1:-0.687381583948;ZBTB16:-0.700164053989;CUX2:-0.709968602288;FOXP3:-0.711884180723;SPI1:-0.72621663415;ESRRA:-0.750440028219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.762889961434;LEF1_TCF7_TCF7L1,2:-0.767492295034;HSF1,2:-0.798840516081;PBX1:-0.807193857352;ZEB1:-0.820094297636;ELF1,2,4:-0.885641329209;SOX2:-0.963486984361;PRRX1,2:-0.981119832805;SNAI1..3:-0.985583522703;FOXN1:-1.00341830699;ATF2:-1.00645684993;ALX1:-1.07629571633;STAT1,3:-1.09563714671;POU2F1..3:-1.09944549801;OCT4_SOX2{dimer}:-1.12220802789;ADNP_IRX_SIX_ZHX:-1.14524321141;MYOD1:-1.14735618388;TGIF1:-1.15395063687;CRX:-1.16041945531;TLX2:-1.17602709903;PAX6:-1.18667683991;GATA6:-1.26383821848;NFY{A,B,C}:-1.3167901474;VSX1,2:-1.33781020174;SOX{8,9,10}:-1.38433334216;FOXQ1:-1.38746297625;EP300:-1.41758074495;NANOG:-2.49028782646 | |top_motifs=ESR1:2.51385073123;FOXL1:2.34204297501;ALX4:2.26878128812;UFEwm:2.20299616277;NKX2-2,8:1.79220764054;ZNF238:1.68589181735;RXR{A,B,G}:1.59847237134;TFAP4:1.54188751198;GLI1..3:1.53524945471;PAX1,9:1.53470988622;EVI1:1.52213946846;EBF1:1.46748839727;NKX3-1:1.46094179832;KLF4:1.38988062105;MYBL2:1.33872927736;HMGA1,2:1.33830687267;HES1:1.25104055001;SPZ1:1.21243658876;TFAP2{A,C}:1.12099483623;TFCP2:1.07119963274;MAZ:1.06317002505;TAL1_TCF{3,4,12}:1.05937257389;IRF1,2:1.04810512897;TP53:1.03665158112;PATZ1:1.01255952634;NANOG{mouse}:0.979078307243;NFIX:0.969253245976;TEAD1:0.930997370225;NKX6-1,2:0.918461150725;FOXD3:0.910661495959;ZNF423:0.875885915229;GATA4:0.870638962492;AIRE:0.858169563549;HAND1,2:0.804269907227;GZF1:0.796203478278;TFAP2B:0.792225024965;MTE{core}:0.783445930404;XCPE1{core}:0.747363334838;TFDP1:0.727360847373;PAX5:0.69965832024;NFATC1..3:0.697099902076;FOXO1,3,4:0.689780982821;ATF6:0.682096664502;NFE2L1:0.678531005544;GTF2A1,2:0.678162147297;ZIC1..3:0.663188696882;HIC1:0.662590511826;MZF1:0.643139970953;GTF2I:0.636173205024;MAFB:0.634017902013;HMX1:0.617875887301;ZBTB6:0.603127131546;TLX1..3_NFIC{dimer}:0.599402576926;SRF:0.599349279695;MTF1:0.59344061978;LHX3,4:0.585078972586;EGR1..3:0.577068981385;GCM1,2:0.507087570035;RREB1:0.476602910074;XBP1:0.466453351062;NR6A1:0.452313650276;TBX4,5:0.389024550631;RXRA_VDR{dimer}:0.386011734;PAX4:0.347517614781;NR3C1:0.344728890374;IRF7:0.341500933966;IKZF1:0.338855215966;bHLH_family:0.32843535431;PRDM1:0.311846121022;GFI1B:0.309572857303;HOX{A4,D4}:0.257727151583;MYB:0.253616922626;SP1:0.240195652837;MYFfamily:0.211927873402;HOX{A6,A7,B6,B7}:0.198184051824;NFE2L2:0.172899801976;NHLH1,2:0.157265560719;CDC5L:0.156810518569;ZFP161:0.153117459338;TOPORS:0.142360023246;PPARG:0.127562789073;NKX2-1,4:0.126066380021;NKX3-2:0.120296350886;NR1H4:0.100676181377;STAT2,4,6:0.0787412106936;STAT5{A,B}:0.0685824412742;HLF:0.0658420310768;PAX3,7:0.0566612770549;BPTF:0.0553559009334;REST:0.0463037706596;MED-1{core}:0.0382307711574;ZNF384:0.0347012594229;CEBPA,B_DDIT3:0.0224286338078;SREBF1,2:0.0186416465383;SMAD1..7,9:0.00533304350804;ARID5B:-0.041574426148;EN1,2:-0.0464579666107;YY1:-0.0555042678948;TBP:-0.0783299451405;SOX17:-0.117980364796;SOX5:-0.144024267615;TEF:-0.145975018861;BACH2:-0.170850943309;NFKB1_REL_RELA:-0.191914488708;DBP:-0.194963710666;DMAP1_NCOR{1,2}_SMARC:-0.203019894845;GFI1:-0.205987021314;LMO2:-0.214539957792;NFE2:-0.221980965546;HNF4A_NR2F1,2:-0.235989483772;HNF1A:-0.238868743174;CREB1:-0.260348700096;NKX2-3_NKX2-5:-0.261064164588;MEF2{A,B,C,D}:-0.266794179782;RBPJ:-0.278132860633;FOS_FOS{B,L1}_JUN{B,D}:-0.282145980957;HIF1A:-0.306852132882;PAX8:-0.309490906242;HOXA9_MEIS1:-0.310464489552;FOXP1:-0.311965602172;ZNF148:-0.322187124568;ATF4:-0.332071110797;POU3F1..4:-0.347248250925;PITX1..3:-0.349820710502;NR5A1,2:-0.353762707039;RUNX1..3:-0.354111626924;ATF5_CREB3:-0.355034077049;CDX1,2,4:-0.379140061274;FOX{D1,D2}:-0.388015998755;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.418429908603;ZNF143:-0.423171836644;RFX1:-0.427239220675;PDX1:-0.439725944379;RFX2..5_RFXANK_RFXAP:-0.451353503495;FOSL2:-0.459740648943;HOX{A5,B5}:-0.460401717307;HBP1_HMGB_SSRP1_UBTF:-0.46204982912;IKZF2:-0.49451660663;AHR_ARNT_ARNT2:-0.515936579282;T:-0.516996977052;E2F1..5:-0.527210974164;RORA:-0.538501572243;FOX{F1,F2,J1}:-0.541048149804;ONECUT1,2:-0.545259098208;FOXA2:-0.558029034429;BREu{core}:-0.576581623224;FOX{I1,J2}:-0.582026965793;POU5F1:-0.588698567503;POU6F1:-0.591877004168;JUN:-0.603221497122;ELK1,4_GABP{A,B1}:-0.613488107849;AR:-0.620834783723;PAX2:-0.622446926846;ETS1,2:-0.638871653041;FOXM1:-0.657389852328;NFIL3:-0.675876776907;SPIB:-0.679031913041;POU1F1:-0.682564194284;NRF1:-0.687381583948;ZBTB16:-0.700164053989;CUX2:-0.709968602288;FOXP3:-0.711884180723;SPI1:-0.72621663415;ESRRA:-0.750440028219;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.762889961434;LEF1_TCF7_TCF7L1,2:-0.767492295034;HSF1,2:-0.798840516081;PBX1:-0.807193857352;ZEB1:-0.820094297636;ELF1,2,4:-0.885641329209;SOX2:-0.963486984361;PRRX1,2:-0.981119832805;SNAI1..3:-0.985583522703;FOXN1:-1.00341830699;ATF2:-1.00645684993;ALX1:-1.07629571633;STAT1,3:-1.09563714671;POU2F1..3:-1.09944549801;OCT4_SOX2{dimer}:-1.12220802789;ADNP_IRX_SIX_ZHX:-1.14524321141;MYOD1:-1.14735618388;TGIF1:-1.15395063687;CRX:-1.16041945531;TLX2:-1.17602709903;PAX6:-1.18667683991;GATA6:-1.26383821848;NFY{A,B,C}:-1.3167901474;VSX1,2:-1.33781020174;SOX{8,9,10}:-1.38433334216;FOXQ1:-1.38746297625;EP300:-1.41758074495;NANOG:-2.49028782646 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11303-117B7;search_select_hide=table117:FF:11303-117B7 | |||
}} | }} | ||
Latest revision as of 16:31, 3 June 2020
| Name: | Fibroblast - Gingival, donor5 (GFH3) |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11952 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11952
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11952
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.266 |
| 10 | 10 | 0.814 |
| 100 | 100 | 0.867 |
| 101 | 101 | 0.2 |
| 102 | 102 | 0.0831 |
| 103 | 103 | 0.843 |
| 104 | 104 | 0.542 |
| 105 | 105 | 0.0837 |
| 106 | 106 | 0.129 |
| 107 | 107 | 0.0803 |
| 108 | 108 | 0.317 |
| 109 | 109 | 0.815 |
| 11 | 11 | 0.685 |
| 110 | 110 | 0.802 |
| 111 | 111 | 0.613 |
| 112 | 112 | 0.783 |
| 113 | 113 | 0.969 |
| 114 | 114 | 0.597 |
| 115 | 115 | 0.00118 |
| 116 | 116 | 0.0426 |
| 117 | 117 | 0.625 |
| 118 | 118 | 0.607 |
| 119 | 119 | 0.839 |
| 12 | 12 | 0.0489 |
| 120 | 120 | 0.306 |
| 121 | 121 | 0.979 |
| 122 | 122 | 0.0254 |
| 123 | 123 | 0.0552 |
| 124 | 124 | 0.624 |
| 125 | 125 | 0.92 |
| 126 | 126 | 0.918 |
| 127 | 127 | 0.843 |
| 128 | 128 | 0.0943 |
| 129 | 129 | 0.307 |
| 13 | 13 | 0.0557 |
| 130 | 130 | 0.853 |
| 131 | 131 | 0.483 |
| 132 | 132 | 0.343 |
| 133 | 133 | 0.213 |
| 134 | 134 | 0.222 |
| 135 | 135 | 0.904 |
| 136 | 136 | 0.0808 |
| 137 | 137 | 0.728 |
| 138 | 138 | 0.994 |
| 139 | 139 | 0.55 |
| 14 | 14 | 0.24 |
| 140 | 140 | 0.638 |
| 141 | 141 | 0.0591 |
| 142 | 142 | 0.923 |
| 143 | 143 | 0.816 |
| 144 | 144 | 0.328 |
| 145 | 145 | 0.72 |
| 146 | 146 | 0.566 |
| 147 | 147 | 0.283 |
| 148 | 148 | 0.472 |
| 149 | 149 | 0.209 |
| 15 | 15 | 0.229 |
| 150 | 150 | 0.121 |
| 151 | 151 | 0.788 |
| 152 | 152 | 0.00338 |
| 153 | 153 | 0.905 |
| 154 | 154 | 0.512 |
| 155 | 155 | 0.111 |
| 156 | 156 | 0.961 |
| 157 | 157 | 0.364 |
| 158 | 158 | 0.0501 |
| 159 | 159 | 0.82 |
| 16 | 16 | 0.135 |
| 160 | 160 | 0.89 |
| 161 | 161 | 0.874 |
| 162 | 162 | 0.251 |
| 163 | 163 | 0.781 |
| 164 | 164 | 0.258 |
| 165 | 165 | 0.905 |
| 166 | 166 | 0.0245 |
| 167 | 167 | 0.379 |
| 168 | 168 | 0.562 |
| 169 | 169 | 0.23 |
| 17 | 17 | 0.76 |
| 18 | 18 | 0.307 |
| 19 | 19 | 0.0096 |
| 2 | 2 | 0.286 |
| 20 | 20 | 0.481 |
| 21 | 21 | 0.151 |
| 22 | 22 | 0.471 |
| 23 | 23 | 0.354 |
| 24 | 24 | 0.146 |
| 25 | 25 | 0.182 |
| 26 | 26 | 0.332 |
| 27 | 27 | 0.855 |
| 28 | 28 | 0.154 |
| 29 | 29 | 0.775 |
| 3 | 3 | 0.888 |
| 30 | 30 | 0.459 |
| 31 | 31 | 0.751 |
| 32 | 32 | 1.03151e-17 |
| 33 | 33 | 0.805 |
| 34 | 34 | 0.92 |
| 35 | 35 | 0.564 |
| 36 | 36 | 0.0138 |
| 37 | 37 | 0.427 |
| 38 | 38 | 0.256 |
| 39 | 39 | 0.626 |
| 4 | 4 | 0.236 |
| 40 | 40 | 0.0442 |
| 41 | 41 | 0.493 |
| 42 | 42 | 0.218 |
| 43 | 43 | 0.968 |
| 44 | 44 | 0.379 |
| 45 | 45 | 0.992 |
| 46 | 46 | 0.59 |
| 47 | 47 | 0.405 |
| 48 | 48 | 0.422 |
| 49 | 49 | 0.267 |
| 5 | 5 | 0.59 |
| 50 | 50 | 0.555 |
| 51 | 51 | 0.929 |
| 52 | 52 | 0.578 |
| 53 | 53 | 0.0807 |
| 54 | 54 | 0.673 |
| 55 | 55 | 0.219 |
| 56 | 56 | 0.861 |
| 57 | 57 | 0.782 |
| 58 | 58 | 0.239 |
| 59 | 59 | 0.0379 |
| 6 | 6 | 0.73 |
| 60 | 60 | 0.996 |
| 61 | 61 | 0.782 |
| 62 | 62 | 0.78 |
| 63 | 63 | 0.479 |
| 64 | 64 | 0.467 |
| 65 | 65 | 0.735 |
| 66 | 66 | 0.104 |
| 67 | 67 | 0.825 |
| 68 | 68 | 0.402 |
| 69 | 69 | 0.604 |
| 7 | 7 | 0.086 |
| 70 | 70 | 0.492 |
| 71 | 71 | 0.624 |
| 72 | 72 | 0.373 |
| 73 | 73 | 0.0215 |
| 74 | 74 | 0.518 |
| 75 | 75 | 0.626 |
| 76 | 76 | 0.177 |
| 77 | 77 | 0.2 |
| 78 | 78 | 0.218 |
| 79 | 79 | 3.82121e-4 |
| 8 | 8 | 0.556 |
| 80 | 80 | 0.039 |
| 81 | 81 | 0.659 |
| 82 | 82 | 0.883 |
| 83 | 83 | 0.094 |
| 84 | 84 | 0.98 |
| 85 | 85 | 0.115 |
| 86 | 86 | 0.426 |
| 87 | 87 | 0.439 |
| 88 | 88 | 0.294 |
| 89 | 89 | 0.105 |
| 9 | 9 | 0.608 |
| 90 | 90 | 0.403 |
| 91 | 91 | 0.775 |
| 92 | 92 | 0.686 |
| 93 | 93 | 0.341 |
| 94 | 94 | 0.852 |
| 95 | 95 | 0.839 |
| 96 | 96 | 0.369 |
| 97 | 97 | 0.689 |
| 98 | 98 | 0.203 |
| 99 | 99 | 0.00422 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11952
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002552 (fibroblast of gingiva)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000063 (human fibroblast of gingiva sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
