FF:10062-101H8: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (24 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005331 | ||
|accession_numbers=CAGE;DRX008732;DRR009604;DRZ001029;DRZ002414;DRZ012379;DRZ013764 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000945,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010062 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/stomach%252c%2520fetal%252c%2520donor1.CNhs11771.10062-101H8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10062-101H8 | |id=FF:10062-101H8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010062 | ||
|is_obsolete= | |||
|library_id=CNhs11771 | |||
|library_id_phase_based=2:CNhs11771 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10062 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10062 | |||
|name=stomach, fetal, donor1 | |name=stomach, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11771,LSID820,release009,COMPLETED | |profile_hcage=CNhs11771,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,0.316072982267525,0.74365393813941,0,0,0,0,0,0,0,0,0,0,0,0,0,0.350605041162569,0,0,0,0,0,0.140172644639791,0,0,0.653251959892296,0,0,0,0,0,0,0,0,0,0,0,0,0.12946247927767,0,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0.18005147637538,0,-0.0969923612426051,0,0,0.293710237277156,0,0,0,0,0,0,0,0,0.238130540907848,0,0,0,0,0,0,0,0,0,0.119065270453924,0,0,0,0,0.149094721294549,0.221558104131838,0.365472586251036,0,0.0981251135987513,0.0903215657665144,0.236293555304756,0,0,0,0.238130540907848,-0.0980353512377064,0.544395039753697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237431412170033,0,0,0,0.155577826725864,0.372877900807054,0,0,0.0699066679941063,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0.238130540907848,0,0,0.391053864490253,0,0.730945172502071,0,0,0,0,0.420431136899424,0.119065270453924,-0.23595567784416,0.0946153983843764,0,0,0.148038584058387,0,0.238130540907848,0,0,0.503928051510997,0,0.503928051510997,0.503928051510997,0,0.262933997537688,0,-0.0504125515893149,0,0,0,0,0.217634572827068,0.19845582061259,0,-0.17425806114951,0.322709603412884,0,0,0,0,-0.0182766435788255,0,0.117251057114108,0.42120788318758,0.786208549671158,0.025673600828928,-0.04680465889238,0,0,0,-0.031019012764085,0.728062449600477,0,0,0.271324423083705,0.404899179192805,0,0,1.41877943884973,0,0.14880302398962,0.0497022324224655,0,0,0,0,0,0,0,0,0,0,0,0.119065270453924,0,0.395376809724982,0.176939454832028,0,0,0.238130540907848,0.157513262795786,0.454499369419479,0,0.0476135995499834,0.839887858502263,0.516576573186297,0.181385315064923,0.827896045045662,0.0589987353605442,-0.302389727009913,0.239746926633009,0.370182510994249,-0.487019444246447,-0.147401849371139,0.0481488213580009,0.0811349517608585,-0.0647676185809841,0.0929969044392124,0.128643609778381,0.450670451947976,0.164464663600243,0.620536175966588,0.191297351367068,0,0.667610012184988,0.152315157747519,-0.0975337750524413,0.0563211769399314,0,-0.490114714476774,0.336157922746798,0.181357476632295,0.00549059450225201,0.240071355169048,-0.0169057586025485,1.12820294045236,0.0464915986144021,0.173767143884073,0.27770526743983,0.0614173104423577,0.91925407064442,0.179172311189642,0.194229609673926,0.600957044558732,0.170382376492479,0.142689845266913,0.53697903634588,0.322709603412884,0,0.167553980086734,0.240677560146031,0,0.238130540907848,0.410852170430209,0,0,-0.0397110773357928,0,0.503928051510997,-0.0398882591654504,0.450137258271455,0.158198302934708,0,-0.0076600467602853,0.0680333642174531,0.162340954969624,0,0.145684727903495,0.245043967032858,0.062313582381441,0.325995211625769,0.0913085925446715,0.110541940065416,0.138565066488841,0.22606316815125,-0.0313409409014849,-0.0584468268118252,0.0557366158954269,0.464116943756603,0.0903215657665144,0.26123524281712,0.13676592637521,1.99646911894906,0.238130540907848,0.106084650783241,0.1997714019317,0.0922285434321983,0.251697031207383,0,0.233199634168684,0,0.145006577443742,0.0832134831729475,0.197585114439122,0.190511421028831,0.581667123576175,0.000544521877926973,0.0407482249881856,0.327907917414873,0.315172619320836,0.137619184281474,0.231543678339016,0.062266533014382,1.12761394020134,0.443068031126399,0.221558104131838,0.272887428840371,0.0991410842286537,0,0.337533781811679,0,0,-0.0223919720267039,-0.235476037764389,0,0.211475301953525,-0.105274862702399,0.315038029449126,0.387956978076063,0,0,-0.407569797084877,0.238130540907848,0.391053864490253,0.793764704123274,0.416944549473523,0.696587195379893,0.137727523003497,0.0092623626717361,0.895239456017686,0,0,0.0606027749426726,0.238130540907848,0.082197385965244,0,0,-0.1308160261449,0,0,0.119065270453924,0,0.000261241687362024,0.139629192505522,0,0,0,0.082378493117388,0,0.169275288656206,0.623138494633765,0.149094721294549,0.391053864490253,-0.560244646956789,0,0,0,0.593435114461039,0,0,0.153127905364859,0.238130540907848,-0.636465161818944,0.113532846514992,-0.12301741567642,0,0,0,0,-0.215723402553475,0.582971987576434,0,0.259191157992621,0,0,0,0,-0.0861409897892114,0,0,0.29671755723052,0.119065270453924,-0.057730457053664,0.052233878511007,0,0,0,0.850659538599545,0,0,0,0.039111367670357,-0.0530491165145752,0,0,-0.128002121875383,0,0.0423598846419582,0.156548661361007,0,0.0620689051879453,-0.46788331370494,0.114636729823038,0,0,0.469598040712184,0,0,-0.0463149203316263,0,0.238130540907848,0.169845592550931,0,0,0,0,0.2035242781475,0,0.176739352090497,0,0,0,0,0,0.238130540907848,0,0,0,0,0,0.255103638449541,-0.0922240566585104,0,0,0,0,0.152526240588577,0,0.238130540907848,0.290486179620147,0.190573855430925,0,0,0,0,0,0.238130540907848,0,0,0.196184072521746,0,0,0,0,0,-0.0969923612426051,0,0.238130540907848,0,0,0.893872761817782,0,0,0.316072982267525,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.340907817375366,0,0.238130540907848,0,0,0,0,0,0.229094753304906,0,0.593435114461039,0,0,-0.113884373708977,0,0,0,0.94537872281819,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238130540907848,0,0,0,0,0,0,0.00670376830902064,0.07100086972691,0,0.192975072519003,0.202649904947509,0,0,-0.0371014203879154,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0576973429690095,0,0,0,0,0,0,0,0.140172644639791,0,0,0.146097731107322,0,0,0,0,0,0,0.325903130448025,0.0878088963862755,0.217131913894919,0,0,0,0.141141359762672,0,0.0643751793120736,0.179396376518601,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.350605041162569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238130540907848,0.31459220269905,0,0,0,0,0,0,0.262706193955103,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.58759154391635,0,0,0,0.454523782527944,0,0,0,0,0,0,0,0,0.391053864490253,0,0,0,0,0,0,0,0,0,0,0,0.238130540907848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325516305551677,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.701831917441131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328765491037512,0,0,0,0,0.343416753829334,0,0,0,0,0,0,0,0.106328687214056,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137443256201748,0,0,0.12946247927767,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.181662415318456,0.372877900807054,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0107485101436373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238130540907848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.116468367238607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.474862824340066,0,0,0,0,0,0,0,0,0,0,0.238130540907848,0,0,0,0,0,0,0,0.195526932245126,0.119065270453924,0,0,0,0,0,0,0,0,0.195526932245126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139481142944013,0,0,0.119065270453924,0,0,0,0,-0.122695996997001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0953254869363625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0317165860483832,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293710237277156,0,0.119065270453924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.653251959892296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119065270453924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211271632345686,0,0,-0.0422874684771159,0,0.167382954664241,0.348479229101678,0,0,0,0,0,0.110912105896958,0,0,0,0,0,0,0,0,0,0,0.145465964680287,0,0,0.058188429821232,0,0,0,0,0,0,0.238130540907848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.280072095322966,0,0,0.196360425939024,0,0,0.041430273632015,0.179928041174511,0,0.391053864490253,0,0,0.216060969399954,0.127493888204083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526227343846776,0,0,0,-0.0568589461625992,-0.0313450946867209,0,0.125091797160573,0,0,-0.0781053106522872,0,0,0,-0.0959594073735869 | |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:RtHFN: Stomach | |rna_catalog_number=Cat:RtHFN: Stomach | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=A? | |sample_ethnicity=A? | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.48485304226927e-226!GO:0005737;cytoplasm;1.01315490480275e-175!GO:0043226;organelle;3.33550398065033e-134!GO:0043229;intracellular organelle;5.27785178889321e-134!GO:0043231;intracellular membrane-bound organelle;1.53889410704253e-125!GO:0043227;membrane-bound organelle;1.58203534620455e-125!GO:0044444;cytoplasmic part;1.15113199496846e-110!GO:0005515;protein binding;3.67999394328049e-88!GO:0044422;organelle part;7.54410450665751e-85!GO:0044446;intracellular organelle part;1.65468277854049e-83!GO:0032991;macromolecular complex;1.78541942826431e-55!GO:0044238;primary metabolic process;5.27036532613072e-55!GO:0044237;cellular metabolic process;7.90328391746464e-55!GO:0043170;macromolecule metabolic process;1.27548479748907e-52!GO:0030529;ribonucleoprotein complex;2.74071737433903e-51!GO:0016043;cellular component organization and biogenesis;2.36209538264319e-47!GO:0019538;protein metabolic process;5.96109300762144e-47!GO:0003723;RNA binding;1.88601349215348e-43!GO:0005739;mitochondrion;2.00616081941139e-42!GO:0043233;organelle lumen;2.50372438931183e-42!GO:0031974;membrane-enclosed lumen;2.50372438931183e-42!GO:0044260;cellular macromolecule metabolic process;7.11369292768113e-41!GO:0044267;cellular protein metabolic process;8.81980548993696e-41!GO:0031090;organelle membrane;6.08324735118088e-40!GO:0044428;nuclear part;8.56311625337222e-40!GO:0033036;macromolecule localization;1.09434920649375e-39!GO:0005634;nucleus;1.37007558753158e-38!GO:0015031;protein transport;5.50388693075613e-38!GO:0008104;protein localization;2.13242335115443e-37!GO:0045184;establishment of protein localization;2.92818922634396e-36!GO:0005840;ribosome;1.98901917429206e-31!GO:0031967;organelle envelope;4.592712612296e-30!GO:0031975;envelope;7.72278357503622e-30!GO:0044429;mitochondrial part;8.75164575531587e-30!GO:0006412;translation;2.47916718392293e-29!GO:0046907;intracellular transport;5.14184395196431e-29!GO:0003735;structural constituent of ribosome;7.76540274236282e-28!GO:0043234;protein complex;4.66104471204052e-27!GO:0009059;macromolecule biosynthetic process;1.13751874059249e-26!GO:0005829;cytosol;2.46223555050268e-26!GO:0016071;mRNA metabolic process;5.44080827202171e-26!GO:0006886;intracellular protein transport;7.10173980545209e-26!GO:0043283;biopolymer metabolic process;3.68350319402013e-25!GO:0065003;macromolecular complex assembly;9.66040908529354e-25!GO:0033279;ribosomal subunit;1.87047885327347e-24!GO:0031981;nuclear lumen;1.91691620313983e-24!GO:0006396;RNA processing;1.91691620313983e-24!GO:0008380;RNA splicing;2.38131809682297e-23!GO:0022607;cellular component assembly;7.01522883575218e-23!GO:0006996;organelle organization and biogenesis;8.18004797025597e-23!GO:0019866;organelle inner membrane;5.91872532036931e-22!GO:0009058;biosynthetic process;8.63313890940004e-22!GO:0006397;mRNA processing;4.02459685899532e-21!GO:0005740;mitochondrial envelope;6.89717186056312e-21!GO:0051641;cellular localization;8.67992609686164e-21!GO:0031966;mitochondrial membrane;1.06488167226112e-20!GO:0005794;Golgi apparatus;1.0979027489865e-20!GO:0043228;non-membrane-bound organelle;1.12612571276083e-20!GO:0043232;intracellular non-membrane-bound organelle;1.12612571276083e-20!GO:0005743;mitochondrial inner membrane;3.56391169067907e-20!GO:0051649;establishment of cellular localization;5.05613606089443e-20!GO:0010467;gene expression;5.3844103044604e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.32325858572971e-19!GO:0008134;transcription factor binding;4.42771931658581e-18!GO:0044249;cellular biosynthetic process;8.69024365918599e-18!GO:0012505;endomembrane system;1.3693277094975e-17!GO:0006119;oxidative phosphorylation;1.52934865424497e-17!GO:0044455;mitochondrial membrane part;1.09412372478369e-16!GO:0044445;cytosolic part;1.58889790928159e-16!GO:0043412;biopolymer modification;3.43138510790782e-16!GO:0005681;spliceosome;9.55120033372382e-16!GO:0000166;nucleotide binding;1.0012390427743e-15!GO:0016192;vesicle-mediated transport;1.03112720408269e-15!GO:0005654;nucleoplasm;1.35301579430298e-15!GO:0005783;endoplasmic reticulum;1.45000971410336e-15!GO:0006464;protein modification process;2.88680446830401e-15!GO:0005746;mitochondrial respiratory chain;3.56652423668229e-15!GO:0048770;pigment granule;5.04822393847161e-15!GO:0042470;melanosome;5.04822393847161e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.31374233804949e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.90183711056551e-14!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.15350227171692e-14!GO:0050136;NADH dehydrogenase (quinone) activity;7.77579555466949e-14!GO:0003954;NADH dehydrogenase activity;7.77579555466949e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.77579555466949e-14!GO:0048193;Golgi vesicle transport;1.17776401101989e-13!GO:0044451;nucleoplasm part;1.30045339017497e-13!GO:0048523;negative regulation of cellular process;6.28639959531406e-13!GO:0015935;small ribosomal subunit;8.67820257760154e-13!GO:0043687;post-translational protein modification;9.42019281803662e-13!GO:0044265;cellular macromolecule catabolic process;1.15956782777645e-12!GO:0015934;large ribosomal subunit;1.23442159589703e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;1.25719673495018e-12!GO:0022618;protein-RNA complex assembly;1.58245860449654e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.84659685748212e-12!GO:0044257;cellular protein catabolic process;2.0345059439127e-12!GO:0019941;modification-dependent protein catabolic process;2.06186420625372e-12!GO:0043632;modification-dependent macromolecule catabolic process;2.06186420625372e-12!GO:0006457;protein folding;2.48560827736401e-12!GO:0030036;actin cytoskeleton organization and biogenesis;5.30123923906456e-12!GO:0031980;mitochondrial lumen;1.07453686103688e-11!GO:0005759;mitochondrial matrix;1.07453686103688e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.09832175717596e-11!GO:0045271;respiratory chain complex I;1.09832175717596e-11!GO:0005747;mitochondrial respiratory chain complex I;1.09832175717596e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.14937575536258e-11!GO:0042773;ATP synthesis coupled electron transport;1.14937575536258e-11!GO:0006605;protein targeting;1.19818807719661e-11!GO:0006793;phosphorus metabolic process;1.57265383751668e-11!GO:0006796;phosphate metabolic process;1.57265383751668e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.63202735412938e-11!GO:0003712;transcription cofactor activity;2.77560011198849e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.33959086828055e-11!GO:0008092;cytoskeletal protein binding;3.65692728697339e-11!GO:0043285;biopolymer catabolic process;5.60638975155814e-11!GO:0032553;ribonucleotide binding;5.98765268343577e-11!GO:0032555;purine ribonucleotide binding;5.98765268343577e-11!GO:0006512;ubiquitin cycle;7.76460288549327e-11!GO:0048519;negative regulation of biological process;9.65007128540712e-11!GO:0017076;purine nucleotide binding;1.40623430423693e-10!GO:0016874;ligase activity;1.60976240882255e-10!GO:0030163;protein catabolic process;1.86531167997051e-10!GO:0031982;vesicle;2.09953993358667e-10!GO:0030029;actin filament-based process;2.31956287999367e-10!GO:0031410;cytoplasmic vesicle;3.24114775266967e-10!GO:0006913;nucleocytoplasmic transport;3.53413475829315e-10!GO:0016462;pyrophosphatase activity;4.59187849683949e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.68718343578883e-10!GO:0006259;DNA metabolic process;4.94744411222099e-10!GO:0017111;nucleoside-triphosphatase activity;5.7269603279458e-10!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.17332267698992e-10!GO:0005793;ER-Golgi intermediate compartment;6.25741016314008e-10!GO:0044432;endoplasmic reticulum part;7.03493766252636e-10!GO:0031988;membrane-bound vesicle;7.06532314464315e-10!GO:0008135;translation factor activity, nucleic acid binding;7.06532314464315e-10!GO:0006461;protein complex assembly;7.08502777184739e-10!GO:0051169;nuclear transport;7.57952970801059e-10!GO:0009057;macromolecule catabolic process;7.75728024773112e-10!GO:0050794;regulation of cellular process;8.38757193736413e-10!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.49365250421241e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;9.91566694693667e-10!GO:0016023;cytoplasmic membrane-bound vesicle;1.03568729601387e-09!GO:0016604;nuclear body;1.11110389411338e-09!GO:0005635;nuclear envelope;1.11110389411338e-09!GO:0012501;programmed cell death;1.11110389411338e-09!GO:0006366;transcription from RNA polymerase II promoter;1.79596578582637e-09!GO:0006915;apoptosis;1.97519715690768e-09!GO:0008565;protein transporter activity;3.12476235913733e-09!GO:0005768;endosome;3.70633126253245e-09!GO:0016310;phosphorylation;4.63083709555972e-09!GO:0031965;nuclear membrane;4.6851746089985e-09!GO:0008219;cell death;4.91770367116115e-09!GO:0016265;death;4.91770367116115e-09!GO:0005730;nucleolus;5.02184104755377e-09!GO:0051082;unfolded protein binding;7.42298681400065e-09!GO:0000502;proteasome complex (sensu Eukaryota);8.81324301319013e-09!GO:0044248;cellular catabolic process;1.24966661316407e-08!GO:0032559;adenyl ribonucleotide binding;1.81109126487801e-08!GO:0007264;small GTPase mediated signal transduction;2.07443034454745e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;2.14597743115863e-08!GO:0000375;RNA splicing, via transesterification reactions;2.14597743115863e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.14597743115863e-08!GO:0005524;ATP binding;2.60365042610488e-08!GO:0044431;Golgi apparatus part;2.67541488484682e-08!GO:0050789;regulation of biological process;2.86681775543521e-08!GO:0006446;regulation of translational initiation;3.03997496273802e-08!GO:0008639;small protein conjugating enzyme activity;3.15216554990541e-08!GO:0009055;electron carrier activity;3.34975449987499e-08!GO:0004842;ubiquitin-protein ligase activity;3.449149923602e-08!GO:0016564;transcription repressor activity;3.84026492688291e-08!GO:0031252;leading edge;4.36585604315837e-08!GO:0030554;adenyl nucleotide binding;4.98197674056277e-08!GO:0016607;nuclear speck;5.31599861017545e-08!GO:0003676;nucleic acid binding;5.84680056075774e-08!GO:0003779;actin binding;6.90045567762594e-08!GO:0006413;translational initiation;9.56671839630026e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.25354155602032e-07!GO:0003743;translation initiation factor activity;1.28055567768828e-07!GO:0017038;protein import;1.2856574540815e-07!GO:0007049;cell cycle;1.37192750374961e-07!GO:0031324;negative regulation of cellular metabolic process;1.56559093409458e-07!GO:0005761;mitochondrial ribosome;1.7343642689119e-07!GO:0000313;organellar ribosome;1.7343642689119e-07!GO:0003714;transcription corepressor activity;1.86015207097025e-07!GO:0007010;cytoskeleton organization and biogenesis;1.88800796423713e-07!GO:0019787;small conjugating protein ligase activity;1.91623010034453e-07!GO:0016070;RNA metabolic process;2.21093232637345e-07!GO:0030120;vesicle coat;2.21093232637345e-07!GO:0030662;coated vesicle membrane;2.21093232637345e-07!GO:0009892;negative regulation of metabolic process;2.22074951128814e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.04413645911594e-07!GO:0051246;regulation of protein metabolic process;4.86202202642583e-07!GO:0016481;negative regulation of transcription;5.13199314714243e-07!GO:0044453;nuclear membrane part;7.51148996180443e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.90208027714636e-07!GO:0009060;aerobic respiration;7.95231522783427e-07!GO:0048475;coated membrane;1.08292727076968e-06!GO:0030117;membrane coat;1.08292727076968e-06!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.18553484238349e-06!GO:0006323;DNA packaging;1.23392427227429e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.36363823299724e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.46263668883503e-06!GO:0000139;Golgi membrane;1.66580015257951e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.75619538028101e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.91792923486083e-06!GO:0051186;cofactor metabolic process;2.52376487411632e-06!GO:0043069;negative regulation of programmed cell death;2.92393150941452e-06!GO:0005789;endoplasmic reticulum membrane;3.0979524891088e-06!GO:0045333;cellular respiration;3.25175959801139e-06!GO:0051170;nuclear import;3.36138555750665e-06!GO:0006606;protein import into nucleus;3.42115749827148e-06!GO:0043066;negative regulation of apoptosis;3.59587435234586e-06!GO:0005083;small GTPase regulator activity;4.72184222975956e-06!GO:0045259;proton-transporting ATP synthase complex;4.99301189000758e-06!GO:0016881;acid-amino acid ligase activity;5.36135942838115e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.43477281701278e-06!GO:0051276;chromosome organization and biogenesis;7.30018034410051e-06!GO:0005788;endoplasmic reticulum lumen;7.91013531012943e-06!GO:0042623;ATPase activity, coupled;7.99373032190828e-06!GO:0048471;perinuclear region of cytoplasm;8.39337260755509e-06!GO:0019829;cation-transporting ATPase activity;9.35341510514865e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.01500931630786e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.09917532179983e-05!GO:0019899;enzyme binding;1.28295974139468e-05!GO:0005643;nuclear pore;1.3227559983273e-05!GO:0008154;actin polymerization and/or depolymerization;1.4331002362025e-05!GO:0065007;biological regulation;1.56680270303463e-05!GO:0015986;ATP synthesis coupled proton transport;1.65205319213807e-05!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.65205319213807e-05!GO:0016887;ATPase activity;1.65289477073014e-05!GO:0005798;Golgi-associated vesicle;1.74390439175244e-05!GO:0016740;transferase activity;1.75678160561357e-05!GO:0007265;Ras protein signal transduction;1.88767698179862e-05!GO:0042981;regulation of apoptosis;1.96236363152295e-05!GO:0000245;spliceosome assembly;2.17584304885529e-05!GO:0005770;late endosome;2.2226013069974e-05!GO:0016044;membrane organization and biogenesis;2.2226013069974e-05!GO:0030695;GTPase regulator activity;2.38159389693501e-05!GO:0043067;regulation of programmed cell death;2.60421049268147e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.60421049268147e-05!GO:0001726;ruffle;2.6379610445264e-05!GO:0032446;protein modification by small protein conjugation;2.6581210620288e-05!GO:0006333;chromatin assembly or disassembly;2.82610414370714e-05!GO:0005773;vacuole;2.84957979403836e-05!GO:0006099;tricarboxylic acid cycle;3.24099141629308e-05!GO:0046356;acetyl-CoA catabolic process;3.24099141629308e-05!GO:0006916;anti-apoptosis;3.5876533556121e-05!GO:0009966;regulation of signal transduction;3.8507235230673e-05!GO:0051427;hormone receptor binding;4.38437132231685e-05!GO:0009056;catabolic process;4.46422213755534e-05!GO:0016563;transcription activator activity;5.15163672571366e-05!GO:0016567;protein ubiquitination;5.17183595150486e-05!GO:0007243;protein kinase cascade;5.3513493151355e-05!GO:0006732;coenzyme metabolic process;5.6470227109755e-05!GO:0050657;nucleic acid transport;5.993475750266e-05!GO:0051236;establishment of RNA localization;5.993475750266e-05!GO:0050658;RNA transport;5.993475750266e-05!GO:0009142;nucleoside triphosphate biosynthetic process;6.53424763583113e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.53424763583113e-05!GO:0006403;RNA localization;6.60305277897009e-05!GO:0000785;chromatin;6.66056266656013e-05!GO:0007242;intracellular signaling cascade;6.93754033607439e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.64693016441338e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.64693016441338e-05!GO:0035257;nuclear hormone receptor binding;8.42684108161073e-05!GO:0045893;positive regulation of transcription, DNA-dependent;8.60417732031483e-05!GO:0003713;transcription coactivator activity;9.93585721673836e-05!GO:0045892;negative regulation of transcription, DNA-dependent;0.000102570731663053!GO:0000151;ubiquitin ligase complex;0.000108686556579524!GO:0030133;transport vesicle;0.000121941831804052!GO:0000323;lytic vacuole;0.000121941831804052!GO:0005764;lysosome;0.000121941831804052!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00012595618886574!GO:0006084;acetyl-CoA metabolic process;0.00012595618886574!GO:0044440;endosomal part;0.000131442971027306!GO:0010008;endosome membrane;0.000131442971027306!GO:0043566;structure-specific DNA binding;0.000132947265041907!GO:0009152;purine ribonucleotide biosynthetic process;0.000138797195289545!GO:0003697;single-stranded DNA binding;0.00014186959456397!GO:0016568;chromatin modification;0.000142179058177747!GO:0051128;regulation of cellular component organization and biogenesis;0.000156722259732653!GO:0003924;GTPase activity;0.000156722259732653!GO:0045786;negative regulation of progression through cell cycle;0.000165839940914785!GO:0065002;intracellular protein transport across a membrane;0.000166879463956193!GO:0048522;positive regulation of cellular process;0.00017077210612205!GO:0006613;cotranslational protein targeting to membrane;0.000175168997393186!GO:0016301;kinase activity;0.000185108769642465!GO:0046930;pore complex;0.000197431788222384!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000197431788222384!GO:0045941;positive regulation of transcription;0.000204490711384224!GO:0006164;purine nucleotide biosynthetic process;0.000217944625778013!GO:0065004;protein-DNA complex assembly;0.000235002885996961!GO:0006754;ATP biosynthetic process;0.000245407532523035!GO:0006753;nucleoside phosphate metabolic process;0.000245407532523035!GO:0022402;cell cycle process;0.000252483432022889!GO:0051726;regulation of cell cycle;0.000263002404257972!GO:0009109;coenzyme catabolic process;0.000264630110829217!GO:0009199;ribonucleoside triphosphate metabolic process;0.000295619532143926!GO:0009150;purine ribonucleotide metabolic process;0.000311683591127652!GO:0000074;regulation of progression through cell cycle;0.000314297713749676!GO:0004386;helicase activity;0.00032442665103568!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000346231263021332!GO:0009144;purine nucleoside triphosphate metabolic process;0.000346231263021332!GO:0008026;ATP-dependent helicase activity;0.000387712172241119!GO:0043623;cellular protein complex assembly;0.000389329217328554!GO:0042254;ribosome biogenesis and assembly;0.000394128246496357!GO:0005525;GTP binding;0.00040398392998729!GO:0006260;DNA replication;0.000421372520443495!GO:0005667;transcription factor complex;0.000423402621732988!GO:0009141;nucleoside triphosphate metabolic process;0.00042750250386495!GO:0006163;purine nucleotide metabolic process;0.000432546528930476!GO:0016469;proton-transporting two-sector ATPase complex;0.000432546528930476!GO:0051187;cofactor catabolic process;0.000438708148029983!GO:0009260;ribonucleotide biosynthetic process;0.000449933157304801!GO:0005905;coated pit;0.000453421918370058!GO:0009259;ribonucleotide metabolic process;0.000520658754509412!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000520658754509412!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000520658754509412!GO:0051028;mRNA transport;0.000530348063605955!GO:0005769;early endosome;0.000541950017013144!GO:0045045;secretory pathway;0.000544098715873802!GO:0030027;lamellipodium;0.00059620807015794!GO:0006974;response to DNA damage stimulus;0.000596761303437318!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.000632501097389696!GO:0033043;regulation of organelle organization and biogenesis;0.000632501097389696!GO:0015980;energy derivation by oxidation of organic compounds;0.00064104152872979!GO:0008361;regulation of cell size;0.000673171127657799!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000690476292883698!GO:0004812;aminoacyl-tRNA ligase activity;0.000690476292883698!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000690476292883698!GO:0048518;positive regulation of biological process;0.000703229279338175!GO:0007266;Rho protein signal transduction;0.000710327359923159!GO:0004674;protein serine/threonine kinase activity;0.000714781895897844!GO:0009719;response to endogenous stimulus;0.000738656385545217!GO:0005694;chromosome;0.000743158650293966!GO:0030041;actin filament polymerization;0.000754394394751166!GO:0016049;cell growth;0.000761840855040433!GO:0016197;endosome transport;0.000815742341073569!GO:0040011;locomotion;0.000847308378995364!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000851917974554246!GO:0004576;oligosaccharyl transferase activity;0.000893653342441842!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000902637177612172!GO:0043038;amino acid activation;0.000937752298517631!GO:0006418;tRNA aminoacylation for protein translation;0.000937752298517631!GO:0043039;tRNA aminoacylation;0.000937752298517631!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00098313779168094!GO:0016311;dephosphorylation;0.00099810401734645!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00100047570066244!GO:0008047;enzyme activator activity;0.00108948833053499!GO:0051789;response to protein stimulus;0.00108960475453302!GO:0006986;response to unfolded protein;0.00108960475453302!GO:0008064;regulation of actin polymerization and/or depolymerization;0.00109667925024069!GO:0051270;regulation of cell motility;0.00110000012947343!GO:0040012;regulation of locomotion;0.00119575399260093!GO:0006897;endocytosis;0.00123806276920443!GO:0010324;membrane invagination;0.00123806276920443!GO:0008250;oligosaccharyl transferase complex;0.00129200763092905!GO:0030118;clathrin coat;0.00129869609824326!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0012996959480779!GO:0046034;ATP metabolic process;0.00134970375204101!GO:0005839;proteasome core complex (sensu Eukaryota);0.00135363071227623!GO:0005885;Arp2/3 protein complex;0.00143560731451688!GO:0005762;mitochondrial large ribosomal subunit;0.00143560731451688!GO:0000315;organellar large ribosomal subunit;0.00143560731451688!GO:0006334;nucleosome assembly;0.00145085381574751!GO:0030658;transport vesicle membrane;0.00153307099024551!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00153493581962697!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00153493581962697!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00153493581962697!GO:0007005;mitochondrion organization and biogenesis;0.00153969275668215!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0015435981460051!GO:0003724;RNA helicase activity;0.0015435981460051!GO:0032561;guanyl ribonucleotide binding;0.00158504835886339!GO:0019001;guanyl nucleotide binding;0.00158504835886339!GO:0030867;rough endoplasmic reticulum membrane;0.00160144304027891!GO:0005100;Rho GTPase activator activity;0.00164550342736202!GO:0033116;ER-Golgi intermediate compartment membrane;0.00164550342736202!GO:0022890;inorganic cation transmembrane transporter activity;0.00180625244283757!GO:0035258;steroid hormone receptor binding;0.00181688826841613!GO:0003729;mRNA binding;0.00189500687686848!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00196458101334198!GO:0051920;peroxiredoxin activity;0.00196764684759031!GO:0005096;GTPase activator activity;0.00205426389887235!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00209999547747935!GO:0006892;post-Golgi vesicle-mediated transport;0.00211886766845954!GO:0051287;NAD binding;0.00220250763686522!GO:0007167;enzyme linked receptor protein signaling pathway;0.00222230070403586!GO:0045454;cell redox homeostasis;0.00222668014358873!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00228126684094203!GO:0003702;RNA polymerase II transcription factor activity;0.00229301172383315!GO:0006979;response to oxidative stress;0.00240375059947986!GO:0008286;insulin receptor signaling pathway;0.00240763403422346!GO:0006402;mRNA catabolic process;0.0024434817905203!GO:0031497;chromatin assembly;0.00246303877727124!GO:0005048;signal sequence binding;0.00258440036576257!GO:0003690;double-stranded DNA binding;0.00260529430570338!GO:0044427;chromosomal part;0.0027643239995153!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0028229135134454!GO:0042802;identical protein binding;0.00289545240042385!GO:0051056;regulation of small GTPase mediated signal transduction;0.00289545240042385!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00296270611926592!GO:0051188;cofactor biosynthetic process;0.00298025342614263!GO:0030659;cytoplasmic vesicle membrane;0.00298025342614263!GO:0001558;regulation of cell growth;0.00305499675323516!GO:0030832;regulation of actin filament length;0.00307710059423207!GO:0008654;phospholipid biosynthetic process;0.00319797799062929!GO:0016859;cis-trans isomerase activity;0.00319829037165257!GO:0016072;rRNA metabolic process;0.00326057598655091!GO:0030134;ER to Golgi transport vesicle;0.00326057598655091!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.00360160247252121!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00361131177578541!GO:0015629;actin cytoskeleton;0.00375083348227766!GO:0004298;threonine endopeptidase activity;0.00382826028158296!GO:0032940;secretion by cell;0.00387963193787129!GO:0032535;regulation of cellular component size;0.00409171309380619!GO:0030132;clathrin coat of coated pit;0.00416534911851662!GO:0016791;phosphoric monoester hydrolase activity;0.00424037590792628!GO:0005938;cell cortex;0.00429157350340904!GO:0030127;COPII vesicle coat;0.00434241974081551!GO:0012507;ER to Golgi transport vesicle membrane;0.00434241974081551!GO:0044420;extracellular matrix part;0.00451180904643722!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00456354064654289!GO:0015399;primary active transmembrane transporter activity;0.00456354064654289!GO:0006401;RNA catabolic process;0.00461636668626257!GO:0005791;rough endoplasmic reticulum;0.00464744322040082!GO:0012506;vesicle membrane;0.00466364949861056!GO:0006364;rRNA processing;0.00486150943079919!GO:0046578;regulation of Ras protein signal transduction;0.00496579022150089!GO:0006281;DNA repair;0.00505979484778532!GO:0044433;cytoplasmic vesicle part;0.00525881825070594!GO:0043021;ribonucleoprotein binding;0.00546079073889035!GO:0030660;Golgi-associated vesicle membrane;0.00568311591744816!GO:0005813;centrosome;0.00570006914141455!GO:0018196;peptidyl-asparagine modification;0.00575749359592993!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00575749359592993!GO:0016787;hydrolase activity;0.00585047099658254!GO:0004721;phosphoprotein phosphatase activity;0.00609125148402798!GO:0006470;protein amino acid dephosphorylation;0.00631259852239001!GO:0006091;generation of precursor metabolites and energy;0.0064149743543378!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00650648238974152!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00652958531825822!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00652958531825822!GO:0051168;nuclear export;0.00662999486702315!GO:0017166;vinculin binding;0.00681862087571027!GO:0005099;Ras GTPase activator activity;0.00728826214226886!GO:0004672;protein kinase activity;0.00792482167484607!GO:0019843;rRNA binding;0.0079451128850063!GO:0003756;protein disulfide isomerase activity;0.0079451128850063!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0079451128850063!GO:0005741;mitochondrial outer membrane;0.00808287215448598!GO:0005581;collagen;0.0082197454740253!GO:0006891;intra-Golgi vesicle-mediated transport;0.00834192446178435!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.00851204613889823!GO:0006612;protein targeting to membrane;0.00864128566668845!GO:0019904;protein domain specific binding;0.00878935072832232!GO:0051252;regulation of RNA metabolic process;0.00910691891300359!GO:0043488;regulation of mRNA stability;0.00986487693104353!GO:0043487;regulation of RNA stability;0.00986487693104353!GO:0006950;response to stress;0.010013315515941!GO:0005637;nuclear inner membrane;0.0100296193579026!GO:0016491;oxidoreductase activity;0.0101366302040234!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0101471895379156!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0101801340026387!GO:0030663;COPI coated vesicle membrane;0.0102695810809997!GO:0030126;COPI vesicle coat;0.0102695810809997!GO:0048468;cell development;0.0102695810809997!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0102695810809997!GO:0015002;heme-copper terminal oxidase activity;0.0102695810809997!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0102695810809997!GO:0004129;cytochrome-c oxidase activity;0.0102695810809997!GO:0006607;NLS-bearing substrate import into nucleus;0.0107618095075973!GO:0000314;organellar small ribosomal subunit;0.0108067451454321!GO:0005763;mitochondrial small ribosomal subunit;0.0108067451454321!GO:0005912;adherens junction;0.0108296370712209!GO:0006650;glycerophospholipid metabolic process;0.0108296370712209!GO:0030125;clathrin vesicle coat;0.0113935107971326!GO:0030665;clathrin coated vesicle membrane;0.0113935107971326!GO:0008139;nuclear localization sequence binding;0.0114456210608694!GO:0016584;nucleosome positioning;0.0114566338759125!GO:0006468;protein amino acid phosphorylation;0.0115519301011532!GO:0006414;translational elongation;0.0115634215403002!GO:0043492;ATPase activity, coupled to movement of substances;0.0115720910702024!GO:0030518;steroid hormone receptor signaling pathway;0.0122463921790837!GO:0030334;regulation of cell migration;0.0125239034206858!GO:0009081;branched chain family amino acid metabolic process;0.0126223038659172!GO:0048487;beta-tubulin binding;0.0126946423485756!GO:0030031;cell projection biogenesis;0.0130335128155241!GO:0005586;collagen type III;0.0131889279639321!GO:0019222;regulation of metabolic process;0.0135049033124547!GO:0030119;AP-type membrane coat adaptor complex;0.013590635868664!GO:0048500;signal recognition particle;0.0138009894432581!GO:0005583;fibrillar collagen;0.0138430294774252!GO:0031968;organelle outer membrane;0.0138820074132357!GO:0030521;androgen receptor signaling pathway;0.0143845570345672!GO:0017048;Rho GTPase binding;0.014464947394431!GO:0005815;microtubule organizing center;0.0146293388673689!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0146744504592026!GO:0030833;regulation of actin filament polymerization;0.0162286457490887!GO:0009108;coenzyme biosynthetic process;0.0164583965609314!GO:0030100;regulation of endocytosis;0.0164733253851681!GO:0031072;heat shock protein binding;0.0165328174578065!GO:0031529;ruffle organization and biogenesis;0.0172963991552075!GO:0044262;cellular carbohydrate metabolic process;0.0173850170410243!GO:0016853;isomerase activity;0.0179172887511051!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0180000495929665!GO:0019867;outer membrane;0.0185816758665238!GO:0003746;translation elongation factor activity;0.018588550188552!GO:0031902;late endosome membrane;0.0186322438767762!GO:0000902;cell morphogenesis;0.0188666190889189!GO:0032989;cellular structure morphogenesis;0.0188666190889189!GO:0030131;clathrin adaptor complex;0.0190033104916149!GO:0008186;RNA-dependent ATPase activity;0.019452132578997!GO:0006399;tRNA metabolic process;0.0195290249600315!GO:0001725;stress fiber;0.0196643578013228!GO:0032432;actin filament bundle;0.0196643578013228!GO:0015630;microtubule cytoskeleton;0.0197626485389629!GO:0008287;protein serine/threonine phosphatase complex;0.0197626485389629!GO:0004680;casein kinase activity;0.0209089204892039!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0215737609294538!GO:0043034;costamere;0.0216639880556726!GO:0008234;cysteine-type peptidase activity;0.0220715305207867!GO:0008022;protein C-terminus binding;0.0223307365221081!GO:0001666;response to hypoxia;0.0223724451268558!GO:0009083;branched chain family amino acid catabolic process;0.0223787681933456!GO:0051101;regulation of DNA binding;0.0232298771726846!GO:0017016;Ras GTPase binding;0.0233411825131886!GO:0006509;membrane protein ectodomain proteolysis;0.0233411825131886!GO:0033619;membrane protein proteolysis;0.0233411825131886!GO:0040008;regulation of growth;0.0233882709908903!GO:0060090;molecular adaptor activity;0.0234491715182526!GO:0043284;biopolymer biosynthetic process;0.0240189859652315!GO:0031267;small GTPase binding;0.0240648658907174!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0240648658907174!GO:0004177;aminopeptidase activity;0.024074009763556!GO:0030137;COPI-coated vesicle;0.0244096788300098!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0246833622352459!GO:0030384;phosphoinositide metabolic process;0.0250499250436169!GO:0006818;hydrogen transport;0.0253890274911844!GO:0005862;muscle thin filament tropomyosin;0.0253890274911844!GO:0009893;positive regulation of metabolic process;0.0253921392872431!GO:0015992;proton transport;0.0263916958808485!GO:0031272;regulation of pseudopodium formation;0.0263916958808485!GO:0031269;pseudopodium formation;0.0263916958808485!GO:0031344;regulation of cell projection organization and biogenesis;0.0263916958808485!GO:0031268;pseudopodium organization and biogenesis;0.0263916958808485!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0263916958808485!GO:0031274;positive regulation of pseudopodium formation;0.0263916958808485!GO:0006752;group transfer coenzyme metabolic process;0.0265391445430717!GO:0007179;transforming growth factor beta receptor signaling pathway;0.026775659385818!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0273773100958403!GO:0051020;GTPase binding;0.0277007251744642!GO:0007030;Golgi organization and biogenesis;0.0281947268224579!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0283312006289977!GO:0031901;early endosome membrane;0.028590060354437!GO:0043681;protein import into mitochondrion;0.0295139295996177!GO:0008147;structural constituent of bone;0.0297887139694856!GO:0030258;lipid modification;0.0301401967250263!GO:0007015;actin filament organization;0.0304642325845981!GO:0009100;glycoprotein metabolic process;0.0304642325845981!GO:0050681;androgen receptor binding;0.0321470881909056!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0321470881909056!GO:0001527;microfibril;0.0323865696496321!GO:0051235;maintenance of localization;0.0330580013607491!GO:0000059;protein import into nucleus, docking;0.0334080853181377!GO:0015631;tubulin binding;0.0334294539576648!GO:0033673;negative regulation of kinase activity;0.0343622691890979!GO:0006469;negative regulation of protein kinase activity;0.0343622691890979!GO:0043205;fibril;0.0359048564206621!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.035905944688795!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0363556836963733!GO:0030140;trans-Golgi network transport vesicle;0.0369217216257314!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0372244230073939!GO:0045047;protein targeting to ER;0.0372244230073939!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0372938522669211!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0373976083109733!GO:0003711;transcription elongation regulator activity;0.038224244138359!GO:0051674;localization of cell;0.0382394077848226!GO:0006928;cell motility;0.0382394077848226!GO:0030522;intracellular receptor-mediated signaling pathway;0.0399991798353973!GO:0030911;TPR domain binding;0.040747063699086!GO:0006643;membrane lipid metabolic process;0.0412447780176841!GO:0050811;GABA receptor binding;0.0415881573174455!GO:0016363;nuclear matrix;0.0418155282861027!GO:0006611;protein export from nucleus;0.0426508747891568!GO:0045603;positive regulation of endothelial cell differentiation;0.0429326329778818!GO:0006839;mitochondrial transport;0.0446270886004405!GO:0004004;ATP-dependent RNA helicase activity;0.0446270886004405!GO:0045947;negative regulation of translational initiation;0.0447957686714153!GO:0040013;negative regulation of locomotion;0.045128093354158!GO:0031625;ubiquitin protein ligase binding;0.045128093354158!GO:0046467;membrane lipid biosynthetic process;0.0453922158105563!GO:0000118;histone deacetylase complex;0.0454174416374687!GO:0051325;interphase;0.0457730967816349!GO:0035035;histone acetyltransferase binding;0.0461322087991602!GO:0044255;cellular lipid metabolic process;0.0461802229475661!GO:0030145;manganese ion binding;0.0464034458759429!GO:0008312;7S RNA binding;0.0465774101925284!GO:0016405;CoA-ligase activity;0.0465774101925284!GO:0019318;hexose metabolic process;0.0468749152503229!GO:0019208;phosphatase regulator activity;0.0469436133585421!GO:0000278;mitotic cell cycle;0.0475947949097522!GO:0006693;prostaglandin metabolic process;0.0478864899982504!GO:0006692;prostanoid metabolic process;0.0478864899982504!GO:0006595;polyamine metabolic process;0.0494430058670243!GO:0030135;coated vesicle;0.0495090754657329 | |||
|sample_id=10062 | |sample_id=10062 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=stomach | |sample_tissue=stomach | ||
|top_motifs=MYBL2:2.73849795374;DBP:2.38623523693;FOX{F1,F2,J1}:2.33468603542;T:2.25284425666;TFAP2{A,C}:2.18210176828;HIC1:2.18141480669;MED-1{core}:2.08962897935;MTE{core}:2.0340927454;EGR1..3:1.98918770932;GATA6:1.96492213348;TOPORS:1.95122871618;TFAP2B:1.91384868466;NR3C1:1.8703314305;MAZ:1.81982264041;HOX{A6,A7,B6,B7}:1.81206894545;HNF1A:1.77980475167;SRF:1.74808734561;MTF1:1.69779418917;TBP:1.63677068723;FOX{D1,D2}:1.61248358619;FOXA2:1.60213860523;BREu{core}:1.54667533556;SP1:1.48667542612;GLI1..3:1.48571368477;FOXL1:1.4332052054;XCPE1{core}:1.35955811951;SNAI1..3:1.31891629359;NKX2-3_NKX2-5:1.30536281301;TFCP2:1.29712562489;PATZ1:1.26588944786;MYFfamily:1.20394142643;PAX6:1.15727095732;FOXP1:1.1202088054;SPZ1:1.1006699292;HNF4A_NR2F1,2:1.10024113881;ATF6:1.05500134781;NR5A1,2:1.05187793533;PITX1..3:1.01991640763;NKX2-1,4:1.01300382873;MZF1:1.00628580798;ZNF148:0.991272148785;AR:0.976390738493;TFAP4:0.968677921371;ZEB1:0.941799135607;IKZF2:0.872526957987;LMO2:0.858215128336;CDC5L:0.816469945669;GTF2I:0.814035786038;HMGA1,2:0.810885993855;TLX1..3_NFIC{dimer}:0.805906723697;POU5F1:0.803447309453;NKX3-1:0.794909200309;RBPJ:0.77867985479;RREB1:0.772513141489;NFATC1..3:0.770632960258;ADNP_IRX_SIX_ZHX:0.730927654383;PRDM1:0.727663403704;TGIF1:0.707677425411;GTF2A1,2:0.688926658907;FOXM1:0.659711483865;SOX17:0.651825245751;POU6F1:0.633594347754;NANOG:0.60894792223;ESR1:0.600768295358;NR6A1:0.593101991204;SOX5:0.573754230683;MEF2{A,B,C,D}:0.572105255018;GFI1B:0.557581855297;ATF2:0.55757741004;PAX5:0.553137365622;VSX1,2:0.539815995181;TEAD1:0.524270739161;FOXD3:0.508205735095;ZFP161:0.476482479175;TFDP1:0.471347887083;JUN:0.457691725492;IKZF1:0.427176760541;ZNF238:0.415164442112;STAT1,3:0.368124009293;ZBTB16:0.2999193463;SOX2:0.278299347342;TLX2:0.257794350242;STAT2,4,6:0.256583474708;EP300:0.249764730568;FOXN1:0.245048761784;FOXO1,3,4:0.242508065528;XBP1:0.212278184774;GZF1:0.210038648559;TBX4,5:0.183224264084;BPTF:0.165299210941;CUX2:0.155556521933;REST:0.153223715364;TAL1_TCF{3,4,12}:0.128821664862;GFI1:0.123884360872;ESRRA:0.121328665033;HAND1,2:0.118376404209;ATF5_CREB3:0.114339286151;AIRE:0.111199201795;IRF7:0.105084636419;ATF4:0.104571871401;PRRX1,2:0.0870232942107;HMX1:0.0425851326618;FOSL2:0.04169734045;NHLH1,2:0.0230900960323;PAX3,7:0.0229057997701;HIF1A:0.0205240148669;TEF:0.0198874398441;ZNF384:0.0157900696277;GATA4:0.0153874118797;LHX3,4:0.0147159700449;ETS1,2:0.0129527726242;SMAD1..7,9:0.00573668754351;POU2F1..3:0.00358362376827;ZNF423:-0.0268231494219;PBX1:-0.0332667204887;HOX{A5,B5}:-0.0353431072274;FOX{I1,J2}:-0.0383794752339;KLF4:-0.0429524395846;RXR{A,B,G}:-0.0448990297803;RFX2..5_RFXANK_RFXAP:-0.0743078711708;NR1H4:-0.0758413266756;DMAP1_NCOR{1,2}_SMARC:-0.0766134451036;RXRA_VDR{dimer}:-0.08517243979;SOX{8,9,10}:-0.0904562354376;MAFB:-0.0994225923127;RORA:-0.111815604318;IRF1,2:-0.140238999725;ZBTB6:-0.153899685988;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.169394640811;NFIL3:-0.175163279258;ALX1:-0.197507982263;LEF1_TCF7_TCF7L1,2:-0.227819257502;SPIB:-0.246791618306;bHLH_family:-0.294216548026;EBF1:-0.298226456271;MYOD1:-0.304103717929;GCM1,2:-0.30489598833;HBP1_HMGB_SSRP1_UBTF:-0.306192406636;RUNX1..3:-0.315285341459;CEBPA,B_DDIT3:-0.324165949532;FOS_FOS{B,L1}_JUN{B,D}:-0.331188340018;CREB1:-0.362665940721;STAT5{A,B}:-0.369732990621;SPI1:-0.371479624958;E2F1..5:-0.384654300001;NFKB1_REL_RELA:-0.42569729629;AHR_ARNT_ARNT2:-0.457572096098;NKX3-2:-0.47884764396;NFY{A,B,C}:-0.50419127092;POU3F1..4:-0.511719270247;RFX1:-0.513865712844;NFE2:-0.527481173686;ZNF143:-0.527667126491;BACH2:-0.528064723029;PAX2:-0.569326131814;HLF:-0.586142028752;FOXP3:-0.587084863295;PAX8:-0.594180954633;HES1:-0.60385099911;TP53:-0.61031721813;ELF1,2,4:-0.635737886664;SREBF1,2:-0.646625661678;OCT4_SOX2{dimer}:-0.653879740094;ONECUT1,2:-0.685520206407;NANOG{mouse}:-0.69050501446;FOXQ1:-0.725509383924;NRF1:-0.82082642113;EVI1:-0.875130784366;ARID5B:-0.877965388913;ZIC1..3:-0.879366829223;UFEwm:-0.896581920419;HOX{A4,D4}:-0.930364402834;PAX1,9:-0.945105944459;NFIX:-0.945661730825;POU1F1:-0.966222894531;NFE2L2:-1.01392544214;CDX1,2,4:-1.03793648756;ELK1,4_GABP{A,B1}:-1.08370648609;PDX1:-1.09106634446;ALX4:-1.09815892531;NKX2-2,8:-1.146350834;HSF1,2:-1.1719960896;NKX6-1,2:-1.22895542946;YY1:-1.23467798213;CRX:-1.28480558461;PPARG:-1.29570903633;EN1,2:-1.35642719709;MYB:-1.40299928542;HOXA9_MEIS1:-1.62665351512;PAX4:-1.79005844064;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.96280864806;NFE2L1:-2.10103319973 | |top_motifs=MYBL2:2.73849795374;DBP:2.38623523693;FOX{F1,F2,J1}:2.33468603542;T:2.25284425666;TFAP2{A,C}:2.18210176828;HIC1:2.18141480669;MED-1{core}:2.08962897935;MTE{core}:2.0340927454;EGR1..3:1.98918770932;GATA6:1.96492213348;TOPORS:1.95122871618;TFAP2B:1.91384868466;NR3C1:1.8703314305;MAZ:1.81982264041;HOX{A6,A7,B6,B7}:1.81206894545;HNF1A:1.77980475167;SRF:1.74808734561;MTF1:1.69779418917;TBP:1.63677068723;FOX{D1,D2}:1.61248358619;FOXA2:1.60213860523;BREu{core}:1.54667533556;SP1:1.48667542612;GLI1..3:1.48571368477;FOXL1:1.4332052054;XCPE1{core}:1.35955811951;SNAI1..3:1.31891629359;NKX2-3_NKX2-5:1.30536281301;TFCP2:1.29712562489;PATZ1:1.26588944786;MYFfamily:1.20394142643;PAX6:1.15727095732;FOXP1:1.1202088054;SPZ1:1.1006699292;HNF4A_NR2F1,2:1.10024113881;ATF6:1.05500134781;NR5A1,2:1.05187793533;PITX1..3:1.01991640763;NKX2-1,4:1.01300382873;MZF1:1.00628580798;ZNF148:0.991272148785;AR:0.976390738493;TFAP4:0.968677921371;ZEB1:0.941799135607;IKZF2:0.872526957987;LMO2:0.858215128336;CDC5L:0.816469945669;GTF2I:0.814035786038;HMGA1,2:0.810885993855;TLX1..3_NFIC{dimer}:0.805906723697;POU5F1:0.803447309453;NKX3-1:0.794909200309;RBPJ:0.77867985479;RREB1:0.772513141489;NFATC1..3:0.770632960258;ADNP_IRX_SIX_ZHX:0.730927654383;PRDM1:0.727663403704;TGIF1:0.707677425411;GTF2A1,2:0.688926658907;FOXM1:0.659711483865;SOX17:0.651825245751;POU6F1:0.633594347754;NANOG:0.60894792223;ESR1:0.600768295358;NR6A1:0.593101991204;SOX5:0.573754230683;MEF2{A,B,C,D}:0.572105255018;GFI1B:0.557581855297;ATF2:0.55757741004;PAX5:0.553137365622;VSX1,2:0.539815995181;TEAD1:0.524270739161;FOXD3:0.508205735095;ZFP161:0.476482479175;TFDP1:0.471347887083;JUN:0.457691725492;IKZF1:0.427176760541;ZNF238:0.415164442112;STAT1,3:0.368124009293;ZBTB16:0.2999193463;SOX2:0.278299347342;TLX2:0.257794350242;STAT2,4,6:0.256583474708;EP300:0.249764730568;FOXN1:0.245048761784;FOXO1,3,4:0.242508065528;XBP1:0.212278184774;GZF1:0.210038648559;TBX4,5:0.183224264084;BPTF:0.165299210941;CUX2:0.155556521933;REST:0.153223715364;TAL1_TCF{3,4,12}:0.128821664862;GFI1:0.123884360872;ESRRA:0.121328665033;HAND1,2:0.118376404209;ATF5_CREB3:0.114339286151;AIRE:0.111199201795;IRF7:0.105084636419;ATF4:0.104571871401;PRRX1,2:0.0870232942107;HMX1:0.0425851326618;FOSL2:0.04169734045;NHLH1,2:0.0230900960323;PAX3,7:0.0229057997701;HIF1A:0.0205240148669;TEF:0.0198874398441;ZNF384:0.0157900696277;GATA4:0.0153874118797;LHX3,4:0.0147159700449;ETS1,2:0.0129527726242;SMAD1..7,9:0.00573668754351;POU2F1..3:0.00358362376827;ZNF423:-0.0268231494219;PBX1:-0.0332667204887;HOX{A5,B5}:-0.0353431072274;FOX{I1,J2}:-0.0383794752339;KLF4:-0.0429524395846;RXR{A,B,G}:-0.0448990297803;RFX2..5_RFXANK_RFXAP:-0.0743078711708;NR1H4:-0.0758413266756;DMAP1_NCOR{1,2}_SMARC:-0.0766134451036;RXRA_VDR{dimer}:-0.08517243979;SOX{8,9,10}:-0.0904562354376;MAFB:-0.0994225923127;RORA:-0.111815604318;IRF1,2:-0.140238999725;ZBTB6:-0.153899685988;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.169394640811;NFIL3:-0.175163279258;ALX1:-0.197507982263;LEF1_TCF7_TCF7L1,2:-0.227819257502;SPIB:-0.246791618306;bHLH_family:-0.294216548026;EBF1:-0.298226456271;MYOD1:-0.304103717929;GCM1,2:-0.30489598833;HBP1_HMGB_SSRP1_UBTF:-0.306192406636;RUNX1..3:-0.315285341459;CEBPA,B_DDIT3:-0.324165949532;FOS_FOS{B,L1}_JUN{B,D}:-0.331188340018;CREB1:-0.362665940721;STAT5{A,B}:-0.369732990621;SPI1:-0.371479624958;E2F1..5:-0.384654300001;NFKB1_REL_RELA:-0.42569729629;AHR_ARNT_ARNT2:-0.457572096098;NKX3-2:-0.47884764396;NFY{A,B,C}:-0.50419127092;POU3F1..4:-0.511719270247;RFX1:-0.513865712844;NFE2:-0.527481173686;ZNF143:-0.527667126491;BACH2:-0.528064723029;PAX2:-0.569326131814;HLF:-0.586142028752;FOXP3:-0.587084863295;PAX8:-0.594180954633;HES1:-0.60385099911;TP53:-0.61031721813;ELF1,2,4:-0.635737886664;SREBF1,2:-0.646625661678;OCT4_SOX2{dimer}:-0.653879740094;ONECUT1,2:-0.685520206407;NANOG{mouse}:-0.69050501446;FOXQ1:-0.725509383924;NRF1:-0.82082642113;EVI1:-0.875130784366;ARID5B:-0.877965388913;ZIC1..3:-0.879366829223;UFEwm:-0.896581920419;HOX{A4,D4}:-0.930364402834;PAX1,9:-0.945105944459;NFIX:-0.945661730825;POU1F1:-0.966222894531;NFE2L2:-1.01392544214;CDX1,2,4:-1.03793648756;ELK1,4_GABP{A,B1}:-1.08370648609;PDX1:-1.09106634446;ALX4:-1.09815892531;NKX2-2,8:-1.146350834;HSF1,2:-1.1719960896;NKX6-1,2:-1.22895542946;YY1:-1.23467798213;CRX:-1.28480558461;PPARG:-1.29570903633;EN1,2:-1.35642719709;MYB:-1.40299928542;HOXA9_MEIS1:-1.62665351512;PAX4:-1.79005844064;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.96280864806;NFE2L1:-2.10103319973 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10062-101H8;search_select_hide=table117:FF:10062-101H8 | |||
}} | }} | ||
Latest revision as of 12:18, 3 June 2020
| Name: | stomach, fetal, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11771 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11771
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11771
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0114 |
| 10 | 10 | 0.0421 |
| 100 | 100 | 0.221 |
| 101 | 101 | 0.614 |
| 102 | 102 | 0.505 |
| 103 | 103 | 0.0306 |
| 104 | 104 | 0.901 |
| 105 | 105 | 0.686 |
| 106 | 106 | 0.875 |
| 107 | 107 | 0.193 |
| 108 | 108 | 0.607 |
| 109 | 109 | 0.0316 |
| 11 | 11 | 0.0682 |
| 110 | 110 | 0.0429 |
| 111 | 111 | 0.0855 |
| 112 | 112 | 0.345 |
| 113 | 113 | 0.00194 |
| 114 | 114 | 0.00138 |
| 115 | 115 | 0.719 |
| 116 | 116 | 0.745 |
| 117 | 117 | 0.00542 |
| 118 | 118 | 0.025 |
| 119 | 119 | 0.642 |
| 12 | 12 | 0.581 |
| 120 | 120 | 0.00987 |
| 121 | 121 | 0.795 |
| 122 | 122 | 0.834 |
| 123 | 123 | 0.324 |
| 124 | 124 | 0.357 |
| 125 | 125 | 0.126 |
| 126 | 126 | 0.66 |
| 127 | 127 | 0.0263 |
| 128 | 128 | 0.253 |
| 129 | 129 | 0.246 |
| 13 | 13 | 0.0727 |
| 130 | 130 | 0.892 |
| 131 | 131 | 0.98 |
| 132 | 132 | 0.0678 |
| 133 | 133 | 0.0643 |
| 134 | 134 | 0.454 |
| 135 | 135 | 0.926 |
| 136 | 136 | 0.885 |
| 137 | 137 | 0.213 |
| 138 | 138 | 0.974 |
| 139 | 139 | 0.298 |
| 14 | 14 | 0.655 |
| 140 | 140 | 0.686 |
| 141 | 141 | 0.968 |
| 142 | 142 | 0.515 |
| 143 | 143 | 0.0046 |
| 144 | 144 | 0.7 |
| 145 | 145 | 0.7 |
| 146 | 146 | 0.73 |
| 147 | 147 | 0.987 |
| 148 | 148 | 0.231 |
| 149 | 149 | 0.231 |
| 15 | 15 | 0.0909 |
| 150 | 150 | 0.515 |
| 151 | 151 | 0.852 |
| 152 | 152 | 0.65 |
| 153 | 153 | 0.878 |
| 154 | 154 | 0.704 |
| 155 | 155 | 0.369 |
| 156 | 156 | 0.917 |
| 157 | 157 | 0.555 |
| 158 | 158 | 0.443 |
| 159 | 159 | 0.367 |
| 16 | 16 | 0.171 |
| 160 | 160 | 0.209 |
| 161 | 161 | 0.385 |
| 162 | 162 | 0.912 |
| 163 | 163 | 0.925 |
| 164 | 164 | 0.0223 |
| 165 | 165 | 0.508 |
| 166 | 166 | 0.44 |
| 167 | 167 | 0.124 |
| 168 | 168 | 0.367 |
| 169 | 169 | 0.132 |
| 17 | 17 | 0.943 |
| 18 | 18 | 0.00446 |
| 19 | 19 | 0.91 |
| 2 | 2 | 0.38 |
| 20 | 20 | 0.258 |
| 21 | 21 | 0.0757 |
| 22 | 22 | 0.527 |
| 23 | 23 | 0.601 |
| 24 | 24 | 0.0496 |
| 25 | 25 | 0.335 |
| 26 | 26 | 0.494 |
| 27 | 27 | 0.53 |
| 28 | 28 | 0.807 |
| 29 | 29 | 0.00666 |
| 3 | 3 | 0.0837 |
| 30 | 30 | 0.133 |
| 31 | 31 | 0.908 |
| 32 | 32 | 0.0704 |
| 33 | 33 | 0.113 |
| 34 | 34 | 0.364 |
| 35 | 35 | 0.0781 |
| 36 | 36 | 0.0172 |
| 37 | 37 | 0.046 |
| 38 | 38 | 0.691 |
| 39 | 39 | 0.835 |
| 4 | 4 | 0.586 |
| 40 | 40 | 0.163 |
| 41 | 41 | 0.0251 |
| 42 | 42 | 0.184 |
| 43 | 43 | 0.195 |
| 44 | 44 | 0.174 |
| 45 | 45 | 0.662 |
| 46 | 46 | 0.071 |
| 47 | 47 | 0.0349 |
| 48 | 48 | 0.117 |
| 49 | 49 | 0.296 |
| 5 | 5 | 0.326 |
| 50 | 50 | 0.485 |
| 51 | 51 | 0.817 |
| 52 | 52 | 0.17 |
| 53 | 53 | 0.646 |
| 54 | 54 | 0.765 |
| 55 | 55 | 0.377 |
| 56 | 56 | 0.548 |
| 57 | 57 | 0.28 |
| 58 | 58 | 0.397 |
| 59 | 59 | 0.298 |
| 6 | 6 | 0.321 |
| 60 | 60 | 0.784 |
| 61 | 61 | 0.836 |
| 62 | 62 | 0.202 |
| 63 | 63 | 0.657 |
| 64 | 64 | 0.368 |
| 65 | 65 | 0.968 |
| 66 | 66 | 0.175 |
| 67 | 67 | 0.0914 |
| 68 | 68 | 0.587 |
| 69 | 69 | 0.695 |
| 7 | 7 | 0.463 |
| 70 | 70 | 0.0411 |
| 71 | 71 | 0.0173 |
| 72 | 72 | 0.417 |
| 73 | 73 | 0.326 |
| 74 | 74 | 0.15 |
| 75 | 75 | 0.0089 |
| 76 | 76 | 0.0975 |
| 77 | 77 | 0.769 |
| 78 | 78 | 0.845 |
| 79 | 79 | 0.149 |
| 8 | 8 | 0.167 |
| 80 | 80 | 0.47 |
| 81 | 81 | 0.169 |
| 82 | 82 | 0.0823 |
| 83 | 83 | 0.717 |
| 84 | 84 | 0.731 |
| 85 | 85 | 0.824 |
| 86 | 86 | 0.32 |
| 87 | 87 | 0.0673 |
| 88 | 88 | 0.791 |
| 89 | 89 | 0.0535 |
| 9 | 9 | 0.797 |
| 90 | 90 | 0.0227 |
| 91 | 91 | 0.879 |
| 92 | 92 | 0.945 |
| 93 | 93 | 0.0267 |
| 94 | 94 | 0.00883 |
| 95 | 95 | 0.0382 |
| 96 | 96 | 0.885 |
| 97 | 97 | 0.314 |
| 98 | 98 | 0.2 |
| 99 | 99 | 0.427 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11771
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010062 human stomach - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000945 (stomach)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010062 (human stomach - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
