FF:10813-111B3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004738 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007970;DRR008842;DRZ000267;DRZ001652;DRZ011617;DRZ013002 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001474,UBERON:0002384,UBERON:0000033,UBERON:0000479,UBERON:0005705,UBERON:0004121,UBERON:0004119,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0010313,UBERON:0001062,UBERON:0000480,UBERON:0000075,UBERON:0004765,UBERON:0008193,UBERON:0001708,UBERON:0010912,UBERON:0011159,UBERON:0002514,UBERON:0003457,UBERON:0008907,UBERON:0008001,UBERON:0007213,UBERON:0009891,UBERON:0003104,UBERON:0007914,UBERON:0010317,UBERON:0007375,UBERON:0003323,UBERON:0010258,UBERON:0005253,UBERON:0007842,UBERON:0004089,UBERON:0000153,UBERON:0007811,UBERON:0002204,UBERON:0001434,UBERON:0001456,UBERON:0008895,UBERON:0002397,UBERON:0003113,UBERON:0011137,UBERON:0003277,UBERON:0009142,UBERON:0010323,UBERON:0001709,UBERON:0002244,UBERON:0005620,UBERON:0010364,UBERON:0004288 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100669 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100669 | |fonse_cell_line=FF:0100669 | ||
|fonse_cell_line_closure=FF:0100669 | |fonse_cell_line_closure=FF:0100669 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/normal%2520embryonic%2520palatal%2520mesenchymal%2520cell%2520line%253aHEPM.CNhs11894.10813-111B3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10813-111B3 | |id=FF:10813-111B3 | ||
|is_a=CL:0000134;;EFO:0002091 | |is_a=CL:0000134;;EFO:0002091;;FF:0000210;;FF:0100669;;UBERON:0005705 | ||
|is_obsolete= | |||
|library_id=CNhs11894 | |||
|library_id_phase_based=2:CNhs11894 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10813 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10813 | |||
|name=normal embryonic palatal mesenchymal cell line:HEPM | |name=normal embryonic palatal mesenchymal cell line:HEPM | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11894,LSID830,release010,COMPLETED | |profile_hcage=CNhs11894,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.221825817831608,0,0.34713457254616,0.226462455379893,0,0,0,0,0,0,0,0,0,0,0,0,0,0.910395986638648,0,0,0,0,0,0.557829519367046,0,0,-0.00176282327986441,0,0,0,0,0,0,0,0,0,0,0,0,0.664524589478184,0.131193766498998,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0.231814006190654,0,0.10300394947757,0,0.344448204563624,0,0,0.0338501392859009,0,0,0,0,0,0,0,0,0.31345124350673,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00449665735250004,0.092726286511738,0.156725621753365,0,0,-0.0584468268118252,0.215613567794565,0,0.773600931766666,0,0,0.0331584152612914,0.173922285887591,0,0,0,0,0,0,0.131193766498998,0,0,0,0,0,0,0,0,0,0,-0.030776710672962,0,0,0,0.355078668486807,0.631066435412674,0,0,0.112405550770006,0,0,0 | |||
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| |||
|rna_box=111 | |rna_box=111 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=14.73552 | |rna_weight_ug=14.73552 | ||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb9095 | |sample_cell_catalog=jcrb9095 | ||
|sample_cell_line=HEPM | |sample_cell_line=HEPM | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.31982057709408e-205!GO:0005737;cytoplasm;1.92463049024484e-175!GO:0043226;organelle;5.5316168798756e-166!GO:0043231;intracellular membrane-bound organelle;7.58236987328901e-166!GO:0043229;intracellular organelle;1.09116499791044e-165!GO:0043227;membrane-bound organelle;1.09116499791044e-165!GO:0044444;cytoplasmic part;4.27289398641198e-131!GO:0044422;organelle part;5.68882121190272e-118!GO:0044446;intracellular organelle part;1.82624563147585e-116!GO:0032991;macromolecular complex;8.67590790348299e-86!GO:0005515;protein binding;2.68185215712608e-74!GO:0044237;cellular metabolic process;4.05194916437247e-73!GO:0044238;primary metabolic process;4.55492542173037e-73!GO:0030529;ribonucleoprotein complex;4.90159858777363e-72!GO:0043170;macromolecule metabolic process;8.3334652646923e-69!GO:0005739;mitochondrion;3.34908856048489e-59!GO:0043233;organelle lumen;1.02738919542474e-58!GO:0031974;membrane-enclosed lumen;1.02738919542474e-58!GO:0005634;nucleus;2.2196377804333e-56!GO:0003723;RNA binding;1.8848174674204e-54!GO:0044428;nuclear part;8.58318248341915e-52!GO:0019538;protein metabolic process;3.19262142439896e-47!GO:0031090;organelle membrane;1.05086070510126e-46!GO:0005840;ribosome;2.625293692352e-46!GO:0043234;protein complex;2.93794548751937e-44!GO:0016043;cellular component organization and biogenesis;7.76181783424218e-43!GO:0044260;cellular macromolecule metabolic process;7.91132153463327e-43!GO:0006412;translation;5.56054715303997e-42!GO:0044267;cellular protein metabolic process;5.74794147277269e-42!GO:0003735;structural constituent of ribosome;3.74238196633903e-41!GO:0044429;mitochondrial part;5.96990485455252e-39!GO:0015031;protein transport;4.41698647039728e-37!GO:0033036;macromolecule localization;1.4946606109283e-36!GO:0033279;ribosomal subunit;2.4294959313084e-36!GO:0009058;biosynthetic process;5.09922230503528e-36!GO:0043283;biopolymer metabolic process;1.50638937286e-35!GO:0006396;RNA processing;4.49979118294061e-35!GO:0005829;cytosol;9.79917389414163e-35!GO:0009059;macromolecule biosynthetic process;1.55492246507504e-34!GO:0008104;protein localization;2.12883080191347e-34!GO:0045184;establishment of protein localization;4.1714656112938e-34!GO:0031967;organelle envelope;1.45641184840752e-32!GO:0031981;nuclear lumen;1.6390252627383e-32!GO:0044249;cellular biosynthetic process;2.03398167526155e-32!GO:0010467;gene expression;2.33076488438591e-32!GO:0031975;envelope;2.35330353109077e-32!GO:0016071;mRNA metabolic process;4.84124333874985e-31!GO:0046907;intracellular transport;1.07148397101915e-29!GO:0008380;RNA splicing;2.37455728464395e-28!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.18596101230586e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.67762462858404e-26!GO:0065003;macromolecular complex assembly;2.48559154308815e-26!GO:0006397;mRNA processing;4.42881850239033e-26!GO:0005740;mitochondrial envelope;1.60906427041519e-25!GO:0019866;organelle inner membrane;5.26284904877385e-25!GO:0006886;intracellular protein transport;5.42061199540818e-25!GO:0031966;mitochondrial membrane;1.71322754762751e-24!GO:0006996;organelle organization and biogenesis;2.2417407531262e-24!GO:0043228;non-membrane-bound organelle;4.87579014065704e-24!GO:0043232;intracellular non-membrane-bound organelle;4.87579014065704e-24!GO:0005743;mitochondrial inner membrane;4.41186143303081e-23!GO:0022607;cellular component assembly;7.97536857443584e-23!GO:0005783;endoplasmic reticulum;2.57354700770353e-22!GO:0006119;oxidative phosphorylation;2.74850539932576e-21!GO:0005654;nucleoplasm;4.32161220018142e-21!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.31915949597391e-21!GO:0044445;cytosolic part;1.09858540688015e-20!GO:0044455;mitochondrial membrane part;1.84261527142611e-20!GO:0005681;spliceosome;1.21312859807166e-19!GO:0006457;protein folding;2.14785824361576e-19!GO:0015934;large ribosomal subunit;2.68790428026501e-19!GO:0012505;endomembrane system;9.79148653131752e-19!GO:0048770;pigment granule;1.08385329302459e-18!GO:0042470;melanosome;1.08385329302459e-18!GO:0051649;establishment of cellular localization;1.28414405905827e-18!GO:0051641;cellular localization;1.97898509055815e-18!GO:0015935;small ribosomal subunit;4.32266786397389e-18!GO:0005794;Golgi apparatus;6.60524893394153e-18!GO:0044451;nucleoplasm part;1.15619474785175e-17!GO:0008134;transcription factor binding;1.55231457148385e-17!GO:0006259;DNA metabolic process;7.88170216804088e-17!GO:0044432;endoplasmic reticulum part;1.27248925449204e-16!GO:0005746;mitochondrial respiratory chain;2.03138847065473e-16!GO:0006512;ubiquitin cycle;2.71740412830304e-16!GO:0031980;mitochondrial lumen;4.00109894626191e-16!GO:0005759;mitochondrial matrix;4.00109894626191e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.60640668974424e-16!GO:0007049;cell cycle;2.31228456070922e-15!GO:0016874;ligase activity;3.19823033448975e-15!GO:0050136;NADH dehydrogenase (quinone) activity;3.89366536025357e-15!GO:0003954;NADH dehydrogenase activity;3.89366536025357e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.89366536025357e-15!GO:0003676;nucleic acid binding;4.63863967897374e-15!GO:0016462;pyrophosphatase activity;6.71563613335636e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.07524297226189e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.17697496660505e-14!GO:0043285;biopolymer catabolic process;1.64839155630608e-14!GO:0022618;protein-RNA complex assembly;2.30450519480683e-14!GO:0005761;mitochondrial ribosome;4.06377590934285e-14!GO:0000313;organellar ribosome;4.06377590934285e-14!GO:0017111;nucleoside-triphosphatase activity;4.17922426505526e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;4.17922426505526e-14!GO:0000166;nucleotide binding;4.69126333757199e-14!GO:0000502;proteasome complex (sensu Eukaryota);4.73033004015473e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);6.64484514368733e-14!GO:0019941;modification-dependent protein catabolic process;7.84822034732962e-14!GO:0043632;modification-dependent macromolecule catabolic process;7.84822034732962e-14!GO:0044265;cellular macromolecule catabolic process;8.07726860883948e-14!GO:0044257;cellular protein catabolic process;9.61674291771402e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.06549305815106e-13!GO:0030163;protein catabolic process;1.90892205734499e-13!GO:0016070;RNA metabolic process;2.05659987092457e-13!GO:0051186;cofactor metabolic process;2.27140170299418e-13!GO:0048193;Golgi vesicle transport;2.54839371748771e-13!GO:0006605;protein targeting;3.13150678874603e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.30019223587696e-13!GO:0045271;respiratory chain complex I;3.30019223587696e-13!GO:0005747;mitochondrial respiratory chain complex I;3.30019223587696e-13!GO:0051082;unfolded protein binding;4.14085027058557e-13!GO:0042775;organelle ATP synthesis coupled electron transport;5.62714022114336e-13!GO:0042773;ATP synthesis coupled electron transport;5.62714022114336e-13!GO:0009057;macromolecule catabolic process;7.38447304839813e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.0202768764221e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.05888259142178e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.16999495884578e-12!GO:0016192;vesicle-mediated transport;1.29245424367775e-12!GO:0008135;translation factor activity, nucleic acid binding;2.96314595703108e-12!GO:0005793;ER-Golgi intermediate compartment;3.27843030126039e-12!GO:0048523;negative regulation of cellular process;5.03192948285986e-12!GO:0003712;transcription cofactor activity;1.11084322665995e-11!GO:0005730;nucleolus;1.30785569480281e-11!GO:0043412;biopolymer modification;1.51307659950149e-11!GO:0022402;cell cycle process;3.1933715756835e-11!GO:0012501;programmed cell death;5.90907793925371e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.06786292579755e-11!GO:0006464;protein modification process;9.05682818823071e-11!GO:0006366;transcription from RNA polymerase II promoter;9.12546846358549e-11!GO:0006915;apoptosis;1.25418001413542e-10!GO:0005789;endoplasmic reticulum membrane;1.58700391782426e-10!GO:0044248;cellular catabolic process;1.7938209351232e-10!GO:0048519;negative regulation of biological process;2.40831591903556e-10!GO:0006732;coenzyme metabolic process;2.70905630362343e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;3.0143266166386e-10!GO:0000375;RNA splicing, via transesterification reactions;3.0143266166386e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.0143266166386e-10!GO:0008639;small protein conjugating enzyme activity;4.63636172815861e-10!GO:0000278;mitotic cell cycle;5.45555798946406e-10!GO:0004842;ubiquitin-protein ligase activity;7.04816916139612e-10!GO:0008219;cell death;8.33593725453099e-10!GO:0016265;death;8.33593725453099e-10!GO:0019787;small conjugating protein ligase activity;1.15196463541485e-09!GO:0032553;ribonucleotide binding;1.17634252406245e-09!GO:0032555;purine ribonucleotide binding;1.17634252406245e-09!GO:0009055;electron carrier activity;1.21172636840413e-09!GO:0003743;translation initiation factor activity;2.02316599015313e-09!GO:0005788;endoplasmic reticulum lumen;3.07076672778835e-09!GO:0017076;purine nucleotide binding;3.34924772973332e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.44229600796401e-09!GO:0006413;translational initiation;3.65791263633238e-09!GO:0009259;ribonucleotide metabolic process;3.76802318362315e-09!GO:0043687;post-translational protein modification;4.21188432887773e-09!GO:0006974;response to DNA damage stimulus;4.60664820193701e-09!GO:0050794;regulation of cellular process;4.84421106493957e-09!GO:0006446;regulation of translational initiation;7.85472752576965e-09!GO:0044431;Golgi apparatus part;1.0028938980568e-08!GO:0009150;purine ribonucleotide metabolic process;1.0028938980568e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.00593047996379e-08!GO:0006163;purine nucleotide metabolic process;1.14854259339332e-08!GO:0031965;nuclear membrane;1.17498647523598e-08!GO:0000074;regulation of progression through cell cycle;1.2168243409174e-08!GO:0051726;regulation of cell cycle;1.22052573039578e-08!GO:0044453;nuclear membrane part;2.75479377351969e-08!GO:0008565;protein transporter activity;2.76160152967166e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.02367205641026e-08!GO:0006888;ER to Golgi vesicle-mediated transport;3.37566577587639e-08!GO:0009152;purine ribonucleotide biosynthetic process;3.49490945046492e-08!GO:0016881;acid-amino acid ligase activity;3.60429875378601e-08!GO:0009199;ribonucleoside triphosphate metabolic process;3.7929382350193e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.99039635441003e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.99039635441003e-08!GO:0006164;purine nucleotide biosynthetic process;4.15527360630343e-08!GO:0009260;ribonucleotide biosynthetic process;4.16743945345149e-08!GO:0005635;nuclear envelope;4.32372721379265e-08!GO:0030120;vesicle coat;4.93607721163803e-08!GO:0030662;coated vesicle membrane;4.93607721163803e-08!GO:0009141;nucleoside triphosphate metabolic process;5.36990813672658e-08!GO:0016604;nuclear body;5.8314687112181e-08!GO:0006913;nucleocytoplasmic transport;7.33262309615014e-08!GO:0009142;nucleoside triphosphate biosynthetic process;8.12632530515787e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;8.12632530515787e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.36328331887873e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.36328331887873e-08!GO:0006461;protein complex assembly;1.08892188686972e-07!GO:0015986;ATP synthesis coupled proton transport;1.0901444566431e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.0901444566431e-07!GO:0009060;aerobic respiration;1.12701623678423e-07!GO:0003924;GTPase activity;1.15768398340101e-07!GO:0045333;cellular respiration;1.27388424996287e-07!GO:0051169;nuclear transport;1.29152748505783e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.30345424052934e-07!GO:0042254;ribosome biogenesis and assembly;1.56419092475403e-07!GO:0005768;endosome;1.8303861240465e-07!GO:0005694;chromosome;2.24890650944164e-07!GO:0051276;chromosome organization and biogenesis;2.95293102337112e-07!GO:0048475;coated membrane;3.12015271562153e-07!GO:0030117;membrane coat;3.12015271562153e-07!GO:0065002;intracellular protein transport across a membrane;3.13753199081632e-07!GO:0051246;regulation of protein metabolic process;3.22719541407144e-07!GO:0065004;protein-DNA complex assembly;3.57514462611091e-07!GO:0006323;DNA packaging;3.62521322427287e-07!GO:0008361;regulation of cell size;3.79569201154053e-07!GO:0017038;protein import;4.05137592657275e-07!GO:0006916;anti-apoptosis;4.38456429039501e-07!GO:0016049;cell growth;4.5821209968767e-07!GO:0042981;regulation of apoptosis;4.87418006707639e-07!GO:0019829;cation-transporting ATPase activity;4.9918573970797e-07!GO:0043067;regulation of programmed cell death;5.03118792375314e-07!GO:0043069;negative regulation of programmed cell death;5.23844928263588e-07!GO:0005524;ATP binding;5.24973440291247e-07!GO:0031324;negative regulation of cellular metabolic process;5.55048127246529e-07!GO:0006281;DNA repair;6.00471836624772e-07!GO:0046034;ATP metabolic process;6.07030612726797e-07!GO:0045786;negative regulation of progression through cell cycle;6.39187169140739e-07!GO:0032559;adenyl ribonucleotide binding;6.47217858722456e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.85962304926045e-07!GO:0043066;negative regulation of apoptosis;7.37122795923645e-07!GO:0050789;regulation of biological process;9.8351601048053e-07!GO:0016564;transcription repressor activity;9.8351601048053e-07!GO:0006754;ATP biosynthetic process;1.14748536208113e-06!GO:0006753;nucleoside phosphate metabolic process;1.14748536208113e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.17170385500088e-06!GO:0003714;transcription corepressor activity;1.33213151990455e-06!GO:0051188;cofactor biosynthetic process;1.39725279178626e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.43313842432849e-06!GO:0004812;aminoacyl-tRNA ligase activity;1.43313842432849e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.43313842432849e-06!GO:0016607;nuclear speck;1.43313842432849e-06!GO:0032446;protein modification by small protein conjugation;1.50442284585734e-06!GO:0042623;ATPase activity, coupled;1.57204318497303e-06!GO:0015630;microtubule cytoskeleton;1.62063199039157e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.62305289190997e-06!GO:0009719;response to endogenous stimulus;1.65863311196267e-06!GO:0000139;Golgi membrane;1.88042855758448e-06!GO:0030554;adenyl nucleotide binding;1.94643830942415e-06!GO:0030532;small nuclear ribonucleoprotein complex;1.94643830942415e-06!GO:0007005;mitochondrion organization and biogenesis;1.95952059256896e-06!GO:0044427;chromosomal part;2.03567274431244e-06!GO:0016887;ATPase activity;2.16784036475801e-06!GO:0009056;catabolic process;2.17761498303911e-06!GO:0031988;membrane-bound vesicle;2.22239091529324e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.31180471887368e-06!GO:0051187;cofactor catabolic process;2.36035176958048e-06!GO:0005773;vacuole;2.40099820222356e-06!GO:0000087;M phase of mitotic cell cycle;2.5532834680002e-06!GO:0016567;protein ubiquitination;2.59302944863968e-06!GO:0006099;tricarboxylic acid cycle;2.80629225579668e-06!GO:0046356;acetyl-CoA catabolic process;2.80629225579668e-06!GO:0006399;tRNA metabolic process;2.8574501384713e-06!GO:0043038;amino acid activation;2.86464057325326e-06!GO:0006418;tRNA aminoacylation for protein translation;2.86464057325326e-06!GO:0043039;tRNA aminoacylation;2.86464057325326e-06!GO:0007067;mitosis;2.88700239242378e-06!GO:0005643;nuclear pore;2.88965618448627e-06!GO:0006333;chromatin assembly or disassembly;3.36705143197201e-06!GO:0045259;proton-transporting ATP synthase complex;3.68070412932032e-06!GO:0005667;transcription factor complex;4.10713665214049e-06!GO:0001558;regulation of cell growth;4.36465232471483e-06!GO:0009892;negative regulation of metabolic process;4.6572230368327e-06!GO:0005839;proteasome core complex (sensu Eukaryota);5.62601885025303e-06!GO:0009109;coenzyme catabolic process;5.74936446690106e-06!GO:0016491;oxidoreductase activity;6.13354052888212e-06!GO:0008654;phospholipid biosynthetic process;6.32995960241665e-06!GO:0000151;ubiquitin ligase complex;7.39804020376006e-06!GO:0006260;DNA replication;7.42084325550102e-06!GO:0006084;acetyl-CoA metabolic process;7.61268328241724e-06!GO:0000785;chromatin;7.88032615507451e-06!GO:0005798;Golgi-associated vesicle;8.69147510940625e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.03080252896704e-05!GO:0022403;cell cycle phase;1.03950310255906e-05!GO:0003713;transcription coactivator activity;1.04793377414548e-05!GO:0051301;cell division;1.0618602726766e-05!GO:0003697;single-stranded DNA binding;1.07702988898989e-05!GO:0009117;nucleotide metabolic process;1.08638485792031e-05!GO:0051789;response to protein stimulus;1.25404075682841e-05!GO:0006986;response to unfolded protein;1.25404075682841e-05!GO:0031982;vesicle;1.33862687718813e-05!GO:0006613;cotranslational protein targeting to membrane;1.53754310379923e-05!GO:0031410;cytoplasmic vesicle;1.65495907068255e-05!GO:0046930;pore complex;1.69355778462137e-05!GO:0000323;lytic vacuole;1.84638891801437e-05!GO:0005764;lysosome;1.84638891801437e-05!GO:0005762;mitochondrial large ribosomal subunit;1.95466140865203e-05!GO:0000315;organellar large ribosomal subunit;1.95466140865203e-05!GO:0016563;transcription activator activity;2.15727339673525e-05!GO:0043566;structure-specific DNA binding;2.27583922156166e-05!GO:0006752;group transfer coenzyme metabolic process;2.2773917614401e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.39612798819178e-05!GO:0005525;GTP binding;2.46854148266362e-05!GO:0004298;threonine endopeptidase activity;2.68069744162444e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.69852117808844e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.79834531301699e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.83099238711673e-05!GO:0006334;nucleosome assembly;3.04389128901246e-05!GO:0004386;helicase activity;3.26625962560196e-05!GO:0005905;coated pit;3.27083841978739e-05!GO:0009108;coenzyme biosynthetic process;3.39075963959897e-05!GO:0008026;ATP-dependent helicase activity;3.48520084243478e-05!GO:0031252;leading edge;3.74312372922825e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.74312372922825e-05!GO:0000245;spliceosome assembly;3.99143328510977e-05!GO:0050657;nucleic acid transport;4.04321694175259e-05!GO:0051236;establishment of RNA localization;4.04321694175259e-05!GO:0050658;RNA transport;4.04321694175259e-05!GO:0006793;phosphorus metabolic process;4.39020935317295e-05!GO:0006796;phosphate metabolic process;4.39020935317295e-05!GO:0045454;cell redox homeostasis;4.64998016640138e-05!GO:0006403;RNA localization;5.01386785325108e-05!GO:0030867;rough endoplasmic reticulum membrane;5.23784286734179e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.28123311280381e-05!GO:0016859;cis-trans isomerase activity;6.08086152557985e-05!GO:0016481;negative regulation of transcription;6.2510663142381e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.61200203379111e-05!GO:0031497;chromatin assembly;7.86684178699293e-05!GO:0040008;regulation of growth;9.11510137199157e-05!GO:0015980;energy derivation by oxidation of organic compounds;0.000100089913748953!GO:0044440;endosomal part;0.000103939327617202!GO:0010008;endosome membrane;0.000103939327617202!GO:0006606;protein import into nucleus;0.000113931829117376!GO:0006364;rRNA processing;0.000117371192905448!GO:0032561;guanyl ribonucleotide binding;0.00012375479295398!GO:0019001;guanyl nucleotide binding;0.00012375479295398!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000126536976213297!GO:0043623;cellular protein complex assembly;0.000129537372197079!GO:0005770;late endosome;0.00013106294905236!GO:0048522;positive regulation of cellular process;0.000131125676778861!GO:0051170;nuclear import;0.000134012159162792!GO:0000314;organellar small ribosomal subunit;0.000142979893431372!GO:0005763;mitochondrial small ribosomal subunit;0.000142979893431372!GO:0005813;centrosome;0.000146494124521596!GO:0030133;transport vesicle;0.000148844017473491!GO:0046474;glycerophospholipid biosynthetic process;0.000157207186689714!GO:0043284;biopolymer biosynthetic process;0.000163053452394987!GO:0016568;chromatin modification;0.000171484107011832!GO:0016853;isomerase activity;0.000175642989412489!GO:0016072;rRNA metabolic process;0.00020971900850374!GO:0016740;transferase activity;0.000212818509642064!GO:0051329;interphase of mitotic cell cycle;0.000228809749624072!GO:0016787;hydrolase activity;0.000263692245242145!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000263692245242145!GO:0016310;phosphorylation;0.000266080228073892!GO:0008250;oligosaccharyl transferase complex;0.00027140171352267!GO:0019899;enzyme binding;0.000273130371765708!GO:0006091;generation of precursor metabolites and energy;0.000279975989358157!GO:0004576;oligosaccharyl transferase activity;0.000286952513536757!GO:0043021;ribonucleoprotein binding;0.000302892719704787!GO:0005815;microtubule organizing center;0.000303247046548238!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0003047515468803!GO:0006612;protein targeting to membrane;0.000326345740039556!GO:0006414;translational elongation;0.000346342389697199!GO:0065007;biological regulation;0.000384986854166079!GO:0005048;signal sequence binding;0.000387883545808463!GO:0030663;COPI coated vesicle membrane;0.000430065705380288!GO:0030126;COPI vesicle coat;0.000430065705380288!GO:0019222;regulation of metabolic process;0.000437763582508157!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000444875306335851!GO:0003724;RNA helicase activity;0.000477434524368973!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000543940074090277!GO:0044262;cellular carbohydrate metabolic process;0.000560953238082271!GO:0005885;Arp2/3 protein complex;0.000589753414549149!GO:0051028;mRNA transport;0.000605761231410011!GO:0005769;early endosome;0.000608797373654045!GO:0018196;peptidyl-asparagine modification;0.000726004792726356!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000726004792726356!GO:0051325;interphase;0.000782858518083782!GO:0016779;nucleotidyltransferase activity;0.000822354043308927!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000849974392486452!GO:0051252;regulation of RNA metabolic process;0.000897796630461429!GO:0051920;peroxiredoxin activity;0.000931881845530859!GO:0030036;actin cytoskeleton organization and biogenesis;0.000932601076981293!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000944745990249389!GO:0030137;COPI-coated vesicle;0.000952529359327814!GO:0007243;protein kinase cascade;0.00102419026955809!GO:0007010;cytoskeleton organization and biogenesis;0.00103357399611554!GO:0007050;cell cycle arrest;0.00103753291050626!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00104238609451974!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00104238609451974!GO:0000279;M phase;0.00119999326121596!GO:0065009;regulation of a molecular function;0.00135887125610684!GO:0019843;rRNA binding;0.00136727673910026!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00137571924796258!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00137571924796258!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00137571924796258!GO:0031968;organelle outer membrane;0.00137571924796258!GO:0019867;outer membrane;0.00143924786240087!GO:0051427;hormone receptor binding;0.00159905450856665!GO:0003729;mRNA binding;0.00167374184053267!GO:0046467;membrane lipid biosynthetic process;0.00169960974166894!GO:0046489;phosphoinositide biosynthetic process;0.00169960974166894!GO:0043681;protein import into mitochondrion;0.0017653782113092!GO:0006891;intra-Golgi vesicle-mediated transport;0.00176660720797585!GO:0048468;cell development;0.00179098038327272!GO:0045892;negative regulation of transcription, DNA-dependent;0.001808746978419!GO:0043488;regulation of mRNA stability;0.00183028176273359!GO:0043487;regulation of RNA stability;0.00183028176273359!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00185403793647077!GO:0016044;membrane organization and biogenesis;0.0021134582830414!GO:0006839;mitochondrial transport;0.00213768046000913!GO:0031543;peptidyl-proline dioxygenase activity;0.00219642835326861!GO:0003899;DNA-directed RNA polymerase activity;0.00229779134354051!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00233142001423875!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00249373160480737!GO:0005791;rough endoplasmic reticulum;0.00268793121868069!GO:0035257;nuclear hormone receptor binding;0.00274749357909746!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00277615441973274!GO:0030132;clathrin coat of coated pit;0.00287300922673289!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00287529351563815!GO:0006650;glycerophospholipid metabolic process;0.00290508590249582!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00293652998032594!GO:0005741;mitochondrial outer membrane;0.00293652998032594!GO:0006626;protein targeting to mitochondrion;0.00301939269498744!GO:0019798;procollagen-proline dioxygenase activity;0.00302280907054225!GO:0030658;transport vesicle membrane;0.00310969544378362!GO:0048500;signal recognition particle;0.0032513549314311!GO:0008092;cytoskeletal protein binding;0.00333749363888373!GO:0031072;heat shock protein binding;0.00345803386850931!GO:0042802;identical protein binding;0.00354442573164411!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00376229815356722!GO:0048518;positive regulation of biological process;0.00381762267432857!GO:0045941;positive regulation of transcription;0.00393185395138226!GO:0000082;G1/S transition of mitotic cell cycle;0.00445675919816748!GO:0005819;spindle;0.00454668578789438!GO:0030027;lamellipodium;0.00468412023566542!GO:0007040;lysosome organization and biogenesis;0.00479131468862462!GO:0030176;integral to endoplasmic reticulum membrane;0.00479131468862462!GO:0008186;RNA-dependent ATPase activity;0.00480126404871649!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00480126404871649!GO:0030134;ER to Golgi transport vesicle;0.00480446270628379!GO:0051168;nuclear export;0.00483913161433192!GO:0009165;nucleotide biosynthetic process;0.00486721183612922!GO:0045792;negative regulation of cell size;0.00486721183612922!GO:0015631;tubulin binding;0.00494116569542721!GO:0005874;microtubule;0.0049984448618348!GO:0030308;negative regulation of cell growth;0.0049984448618348!GO:0016197;endosome transport;0.00503528738874299!GO:0006402;mRNA catabolic process;0.00513244405278887!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00523196937643367!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00523196937643367!GO:0022890;inorganic cation transmembrane transporter activity;0.00532414302188437!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00544097183927216!GO:0030118;clathrin coat;0.00577701229829811!GO:0051098;regulation of binding;0.00577701229829811!GO:0043433;negative regulation of transcription factor activity;0.00590342635352239!GO:0008286;insulin receptor signaling pathway;0.0061429417386158!GO:0045926;negative regulation of growth;0.00616602674038786!GO:0007034;vacuolar transport;0.00640678755609516!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00647970617621097!GO:0045047;protein targeting to ER;0.00647970617621097!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00661636519310726!GO:0015399;primary active transmembrane transporter activity;0.00661636519310726!GO:0051287;NAD binding;0.00682983991882446!GO:0003690;double-stranded DNA binding;0.00682991572273206!GO:0030029;actin filament-based process;0.00691456035352016!GO:0031418;L-ascorbic acid binding;0.00697467940855499!GO:0005637;nuclear inner membrane;0.007485154804287!GO:0030127;COPII vesicle coat;0.00768593566468541!GO:0012507;ER to Golgi transport vesicle membrane;0.00768593566468541!GO:0016363;nuclear matrix;0.00790331967944176!GO:0006261;DNA-dependent DNA replication;0.00790331967944176!GO:0007033;vacuole organization and biogenesis;0.0079468390443049!GO:0006497;protein amino acid lipidation;0.00797323308821275!GO:0007006;mitochondrial membrane organization and biogenesis;0.00797323308821275!GO:0031272;regulation of pseudopodium formation;0.00797323308821275!GO:0031269;pseudopodium formation;0.00797323308821275!GO:0031344;regulation of cell projection organization and biogenesis;0.00797323308821275!GO:0031268;pseudopodium organization and biogenesis;0.00797323308821275!GO:0031346;positive regulation of cell projection organization and biogenesis;0.00797323308821275!GO:0031274;positive regulation of pseudopodium formation;0.00797323308821275!GO:0007041;lysosomal transport;0.0080520808985137!GO:0006509;membrane protein ectodomain proteolysis;0.00809062925756521!GO:0033619;membrane protein proteolysis;0.00809062925756521!GO:0031124;mRNA 3'-end processing;0.00839363545828234!GO:0030660;Golgi-associated vesicle membrane;0.00861875622629024!GO:0003711;transcription elongation regulator activity;0.00867410335996082!GO:0044420;extracellular matrix part;0.00870448103072388!GO:0008180;signalosome;0.00874250356919364!GO:0033673;negative regulation of kinase activity;0.00883963867752087!GO:0006469;negative regulation of protein kinase activity;0.00883963867752087!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00892614299881299!GO:0007264;small GTPase mediated signal transduction;0.00893954865455355!GO:0006979;response to oxidative stress;0.00900857796755518!GO:0017166;vinculin binding;0.00900857796755518!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00921456391135073!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0094473553697946!GO:0006383;transcription from RNA polymerase III promoter;0.0097237844811455!GO:0045893;positive regulation of transcription, DNA-dependent;0.00997008730844478!GO:0003746;translation elongation factor activity;0.0100851255767208!GO:0008312;7S RNA binding;0.0101493876251915!GO:0051128;regulation of cellular component organization and biogenesis;0.0101944401511139!GO:0045936;negative regulation of phosphate metabolic process;0.0102551103276219!GO:0008610;lipid biosynthetic process;0.0102551103276219!GO:0048487;beta-tubulin binding;0.010540076300149!GO:0006740;NADPH regeneration;0.0105520876751635!GO:0006098;pentose-phosphate shunt;0.0105520876751635!GO:0015992;proton transport;0.0105521633335819!GO:0006595;polyamine metabolic process;0.0105743256459069!GO:0005869;dynactin complex;0.0108487909982085!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0108487909982085!GO:0048471;perinuclear region of cytoplasm;0.0112156913196484!GO:0008139;nuclear localization sequence binding;0.0113249210957758!GO:0006818;hydrogen transport;0.0113881689308116!GO:0030041;actin filament polymerization;0.0114616335804803!GO:0004004;ATP-dependent RNA helicase activity;0.0116206382282949!GO:0007051;spindle organization and biogenesis;0.0116866239882529!GO:0008047;enzyme activator activity;0.0117625442759176!GO:0045045;secretory pathway;0.0121030275227264!GO:0051348;negative regulation of transferase activity;0.0125244068292126!GO:0046983;protein dimerization activity;0.0125546743388606!GO:0006506;GPI anchor biosynthetic process;0.0128269181650056!GO:0009967;positive regulation of signal transduction;0.0134292749231218!GO:0043022;ribosome binding;0.0135080329616892!GO:0006401;RNA catabolic process;0.0136707831351183!GO:0008154;actin polymerization and/or depolymerization;0.0138682204191554!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0138682204191554!GO:0015002;heme-copper terminal oxidase activity;0.0138682204191554!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0138682204191554!GO:0004129;cytochrome-c oxidase activity;0.0138682204191554!GO:0030384;phosphoinositide metabolic process;0.0138971684240541!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0140011826964826!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0140551695903446!GO:0005581;collagen;0.0151025282858847!GO:0006352;transcription initiation;0.0152776015454159!GO:0051101;regulation of DNA binding;0.0153950324711305!GO:0004860;protein kinase inhibitor activity;0.0155841937711163!GO:0008022;protein C-terminus binding;0.015784515105027!GO:0006505;GPI anchor metabolic process;0.0162972169340807!GO:0016272;prefoldin complex;0.0168635157057725!GO:0005100;Rho GTPase activator activity;0.0168865869646057!GO:0030125;clathrin vesicle coat;0.0175265581378927!GO:0030665;clathrin coated vesicle membrane;0.0175265581378927!GO:0005096;GTPase activator activity;0.0176936580079356!GO:0000786;nucleosome;0.0179355703246324!GO:0030119;AP-type membrane coat adaptor complex;0.0182630221136713!GO:0030145;manganese ion binding;0.0184590284273831!GO:0003756;protein disulfide isomerase activity;0.0187897928315876!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0187897928315876!GO:0016126;sterol biosynthetic process;0.0191681370738475!GO:0005684;U2-dependent spliceosome;0.0191681370738475!GO:0000059;protein import into nucleus, docking;0.019177746594096!GO:0000049;tRNA binding;0.0192241065077839!GO:0030199;collagen fibril organization;0.0192497238949533!GO:0008632;apoptotic program;0.0194779327800664!GO:0030659;cytoplasmic vesicle membrane;0.0196155849315876!GO:0003684;damaged DNA binding;0.0203641694102976!GO:0031529;ruffle organization and biogenesis;0.0203641694102976!GO:0030880;RNA polymerase complex;0.0203753980693901!GO:0031323;regulation of cellular metabolic process;0.0203753980693901!GO:0004722;protein serine/threonine phosphatase activity;0.0203753980693901!GO:0042158;lipoprotein biosynthetic process;0.0207282410421666!GO:0030833;regulation of actin filament polymerization;0.0222995870838268!GO:0005801;cis-Golgi network;0.0227215449612482!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0229748613293724!GO:0030521;androgen receptor signaling pathway;0.023384211330376!GO:0051087;chaperone binding;0.0234779033225743!GO:0046426;negative regulation of JAK-STAT cascade;0.023843795490487!GO:0006984;ER-nuclear signaling pathway;0.0238574798075749!GO:0042326;negative regulation of phosphorylation;0.0239419139106253!GO:0005862;muscle thin filament tropomyosin;0.0245961292833661!GO:0003923;GPI-anchor transamidase activity;0.0252130924151614!GO:0016255;attachment of GPI anchor to protein;0.0252130924151614!GO:0042765;GPI-anchor transamidase complex;0.0252130924151614!GO:0006778;porphyrin metabolic process;0.0256280461278134!GO:0033013;tetrapyrrole metabolic process;0.0256280461278134!GO:0050811;GABA receptor binding;0.0262392739513377!GO:0008287;protein serine/threonine phosphatase complex;0.0267630665690769!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0269227563389631!GO:0051540;metal cluster binding;0.0271664973930206!GO:0051536;iron-sulfur cluster binding;0.0271664973930206!GO:0005832;chaperonin-containing T-complex;0.0281793833358068!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0283586966737119!GO:0006354;RNA elongation;0.0288308167835649!GO:0016408;C-acyltransferase activity;0.0288675578439965!GO:0050790;regulation of catalytic activity;0.0289540747811433!GO:0044433;cytoplasmic vesicle part;0.0292101793203578!GO:0019752;carboxylic acid metabolic process;0.0294455537426027!GO:0006082;organic acid metabolic process;0.0296776879503672!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0297619516065935!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0297619516065935!GO:0006611;protein export from nucleus;0.0299313202596265!GO:0051539;4 iron, 4 sulfur cluster binding;0.0300385777244006!GO:0031625;ubiquitin protein ligase binding;0.0300385777244006!GO:0001527;microfibril;0.0301398836708615!GO:0030131;clathrin adaptor complex;0.0301650462110882!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0302440208068781!GO:0000209;protein polyubiquitination;0.0311374793550179!GO:0016584;nucleosome positioning;0.0315048669580039!GO:0008147;structural constituent of bone;0.0315793752203958!GO:0008484;sulfuric ester hydrolase activity;0.0316332359863839!GO:0006289;nucleotide-excision repair;0.0319625566805986!GO:0046483;heterocycle metabolic process;0.0322796485146239!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0323493928969708!GO:0051052;regulation of DNA metabolic process;0.0323608286401435!GO:0031123;RNA 3'-end processing;0.0330629390298004!GO:0006897;endocytosis;0.0335047022398355!GO:0010324;membrane invagination;0.0335047022398355!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0336862798399086!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0347007740224116!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0347007740224116!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0347007740224116!GO:0005669;transcription factor TFIID complex;0.0350513140673229!GO:0000902;cell morphogenesis;0.0356276414769784!GO:0032989;cellular structure morphogenesis;0.0356276414769784!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0366167891199568!GO:0000428;DNA-directed RNA polymerase complex;0.0366167891199568!GO:0008652;amino acid biosynthetic process;0.0371020761297056!GO:0051059;NF-kappaB binding;0.0375814898454517!GO:0042585;germinal vesicle;0.0375814898454517!GO:0007569;cell aging;0.0376366633957018!GO:0042168;heme metabolic process;0.0395235403861094!GO:0033239;negative regulation of amine metabolic process;0.0403950510169203!GO:0045763;negative regulation of amino acid metabolic process;0.0403950510169203!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0403950510169203!GO:0043492;ATPase activity, coupled to movement of substances;0.0404914870546111!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0404914870546111!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0404914870546111!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.040598051888335!GO:0005657;replication fork;0.040725251208386!GO:0030911;TPR domain binding;0.0414004325958097!GO:0007030;Golgi organization and biogenesis;0.0418323804647855!GO:0001726;ruffle;0.0421153868079676!GO:0003682;chromatin binding;0.0422511772035952!GO:0006695;cholesterol biosynthetic process;0.0427421745640802!GO:0016251;general RNA polymerase II transcription factor activity;0.0431009789829632!GO:0022408;negative regulation of cell-cell adhesion;0.0431009789829632!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0431009789829632!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.04317002339308!GO:0012506;vesicle membrane;0.0438328005577574!GO:0031902;late endosome membrane;0.0449432551896551!GO:0003678;DNA helicase activity;0.0458395484070982!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0458395484070982!GO:0010257;NADH dehydrogenase complex assembly;0.0458395484070982!GO:0033108;mitochondrial respiratory chain complex assembly;0.0458395484070982!GO:0000096;sulfur amino acid metabolic process;0.0460449161949444!GO:0035035;histone acetyltransferase binding;0.0467255525379539!GO:0006739;NADP metabolic process;0.0477746799604901!GO:0006378;mRNA polyadenylation;0.047959236129747!GO:0031371;ubiquitin conjugating enzyme complex;0.0487221534219277!GO:0008283;cell proliferation;0.0494057127714156!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0496818424652021!GO:0033559;unsaturated fatty acid metabolic process;0.0499690409942209!GO:0006636;unsaturated fatty acid biosynthetic process;0.0499690409942209!GO:0046519;sphingoid metabolic process;0.0499690409942209 | |||
|sample_id=10813 | |sample_id=10813 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=palate | |sample_tissue=palate | ||
|top_motifs=FOXL1:2.85083557332;ESR1:2.57837804792;ALX4:2.30780162748;ATF6:2.06650059581;UFEwm:2.06203702592;NKX3-1:2.04055349488;TAL1_TCF{3,4,12}:1.95013468742;HMGA1,2:1.67845845482;HMX1:1.65887577055;ZIC1..3:1.62483626172;EVI1:1.60916709832;GLI1..3:1.59881704758;ZNF384:1.54557953245;NANOG{mouse}:1.53814063805;AIRE:1.48973284488;MAFB:1.36185833217;MYBL2:1.34100461052;LHX3,4:1.23061466907;ZNF238:1.22637027111;KLF4:1.18935129869;TFAP4:1.1565812017;XBP1:1.08536030641;NKX2-1,4:1.06669993401;TEAD1:1.06268207147;FOXD3:1.05823815993;GFI1:1.05458212822;HIF1A:1.04588406923;MTE{core}:1.03151382909;ARID5B:0.949309316;SRF:0.930946516613;RXR{A,B,G}:0.887668581294;GATA4:0.867329448223;PAX4:0.850397693545;CDC5L:0.845607261253;GZF1:0.843841467517;PATZ1:0.840218268402;HOX{A4,D4}:0.839807428784;TFAP2B:0.825471453154;PAX8:0.81398964152;ZNF423:0.807161881664;PRDM1:0.791092072598;FOX{I1,J2}:0.778421851399;TFAP2{A,C}:0.776281282147;TFCP2:0.744019398259;SPZ1:0.707281267488;RBPJ:0.697925456843;MAZ:0.695864343756;HIC1:0.687702374271;TOPORS:0.678123086311;TP53:0.676385571365;ZBTB6:0.646553643211;SOX17:0.644626670008;SOX5:0.622523210527;PAX1,9:0.596508206938;GTF2I:0.596268318447;GFI1B:0.590867092648;TBX4,5:0.574354688451;TLX1..3_NFIC{dimer}:0.534577436735;HSF1,2:0.528046177318;NFATC1..3:0.52510771277;MZF1:0.521750448031;BPTF:0.510409752214;HES1:0.505107122076;IKZF1:0.500470982882;GTF2A1,2:0.497918535963;EGR1..3:0.474362120975;RXRA_VDR{dimer}:0.473476877756;EBF1:0.459454331609;PDX1:0.439043011089;NR6A1:0.429433024607;NR3C1:0.416378681456;POU5F1:0.390683629018;RREB1:0.358003335398;ATF4:0.351680698083;TBP:0.321441997385;STAT5{A,B}:0.316656122983;HOX{A5,B5}:0.31084479881;CREB1:0.310644791036;SP1:0.306973076665;TFDP1:0.295391205557;MTF1:0.293154917027;RFX1:0.280206100961;NFE2L1:0.2755224331;XCPE1{core}:0.269728774803;STAT2,4,6:0.233390374405;NFIL3:0.202610822639;EN1,2:0.188231663586;POU3F1..4:0.182517336843;MYFfamily:0.162778103038;FOXN1:0.155417209484;TEF:0.152451374208;HOX{A6,A7,B6,B7}:0.152192257582;MEF2{A,B,C,D}:0.124221103475;MED-1{core}:0.114140740312;LEF1_TCF7_TCF7L1,2:0.0645275660858;GCM1,2:0.0562334659695;AHR_ARNT_ARNT2:0.0536941767389;IKZF2:0.0492791297399;FOX{F1,F2,J1}:0.0233557897748;HLF:0.0146410327042;FOXO1,3,4:-0.0311856730083;HAND1,2:-0.0362547286455;BACH2:-0.052518344878;REST:-0.0555736516005;bHLH_family:-0.0728347673725;NFIX:-0.0788092901104;CEBPA,B_DDIT3:-0.0896700931254;PAX5:-0.0931107044963;NFE2:-0.0955817279592;NKX2-2,8:-0.101190928639;DBP:-0.108953691867;FOX{D1,D2}:-0.110623532483;FOXP1:-0.139340517777;ATF5_CREB3:-0.150587947247;JUN:-0.151658505024;ONECUT1,2:-0.152334667726;DMAP1_NCOR{1,2}_SMARC:-0.153434076908;NKX6-1,2:-0.160475674893;SOX2:-0.167178600981;FOS_FOS{B,L1}_JUN{B,D}:-0.183652111871;NFE2L2:-0.183900559148;ZNF143:-0.194245179748;MYB:-0.196174425614;NHLH1,2:-0.20521535664;NR1H4:-0.207001332967;FOSL2:-0.215701850265;NKX3-2:-0.239279086437;IRF1,2:-0.251234157442;FOXA2:-0.263531536984;YY1:-0.289405454364;RUNX1..3:-0.291284398264;ATF2:-0.291321306374;PPARG:-0.296371896459;SMAD1..7,9:-0.305410014057;NRF1:-0.365298545838;E2F1..5:-0.368891111944;PAX3,7:-0.372580490681;T:-0.393881680893;NKX2-3_NKX2-5:-0.414196704408;RFX2..5_RFXANK_RFXAP:-0.44528237641;NFKB1_REL_RELA:-0.461563516954;NFY{A,B,C}:-0.466567671286;HNF4A_NR2F1,2:-0.46755473184;FOXP3:-0.475691969481;ELK1,4_GABP{A,B1}:-0.475927907204;ZBTB16:-0.484812870104;HNF1A:-0.491949673417;LMO2:-0.492515683569;POU2F1..3:-0.500843081322;ZFP161:-0.501754395443;EP300:-0.504075255635;TGIF1:-0.520552623795;ZNF148:-0.53320079155;AR:-0.535974099714;RORA:-0.538705585002;SPIB:-0.595524336092;FOXQ1:-0.621797168106;SREBF1,2:-0.63050852164;SNAI1..3:-0.634685258973;FOXM1:-0.652001824617;PBX1:-0.669064208492;TLX2:-0.674523129284;PITX1..3:-0.680281844175;BREu{core}:-0.718063847301;ADNP_IRX_SIX_ZHX:-0.745491123551;SPI1:-0.771326365754;POU6F1:-0.777143244247;CDX1,2,4:-0.786120901891;IRF7:-0.817750800682;HOXA9_MEIS1:-0.826666382582;ALX1:-0.83038599834;ELF1,2,4:-0.871965933611;PRRX1,2:-0.87575280093;ETS1,2:-0.913933306434;HBP1_HMGB_SSRP1_UBTF:-0.984461679606;NR5A1,2:-0.984788470283;ZEB1:-0.985274906712;STAT1,3:-0.986466840568;SOX{8,9,10}:-1.0055443138;OCT4_SOX2{dimer}:-1.07665096183;ESRRA:-1.0766918085;GATA6:-1.10206930669;VSX1,2:-1.11980966381;PAX2:-1.14648383678;PAX6:-1.19872917513;POU1F1:-1.22608304816;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.23461465424;CUX2:-1.28332205549;CRX:-1.40953954776;NANOG:-1.45643892468;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.45740799303;MYOD1:-1.83929551811 | |top_motifs=FOXL1:2.85083557332;ESR1:2.57837804792;ALX4:2.30780162748;ATF6:2.06650059581;UFEwm:2.06203702592;NKX3-1:2.04055349488;TAL1_TCF{3,4,12}:1.95013468742;HMGA1,2:1.67845845482;HMX1:1.65887577055;ZIC1..3:1.62483626172;EVI1:1.60916709832;GLI1..3:1.59881704758;ZNF384:1.54557953245;NANOG{mouse}:1.53814063805;AIRE:1.48973284488;MAFB:1.36185833217;MYBL2:1.34100461052;LHX3,4:1.23061466907;ZNF238:1.22637027111;KLF4:1.18935129869;TFAP4:1.1565812017;XBP1:1.08536030641;NKX2-1,4:1.06669993401;TEAD1:1.06268207147;FOXD3:1.05823815993;GFI1:1.05458212822;HIF1A:1.04588406923;MTE{core}:1.03151382909;ARID5B:0.949309316;SRF:0.930946516613;RXR{A,B,G}:0.887668581294;GATA4:0.867329448223;PAX4:0.850397693545;CDC5L:0.845607261253;GZF1:0.843841467517;PATZ1:0.840218268402;HOX{A4,D4}:0.839807428784;TFAP2B:0.825471453154;PAX8:0.81398964152;ZNF423:0.807161881664;PRDM1:0.791092072598;FOX{I1,J2}:0.778421851399;TFAP2{A,C}:0.776281282147;TFCP2:0.744019398259;SPZ1:0.707281267488;RBPJ:0.697925456843;MAZ:0.695864343756;HIC1:0.687702374271;TOPORS:0.678123086311;TP53:0.676385571365;ZBTB6:0.646553643211;SOX17:0.644626670008;SOX5:0.622523210527;PAX1,9:0.596508206938;GTF2I:0.596268318447;GFI1B:0.590867092648;TBX4,5:0.574354688451;TLX1..3_NFIC{dimer}:0.534577436735;HSF1,2:0.528046177318;NFATC1..3:0.52510771277;MZF1:0.521750448031;BPTF:0.510409752214;HES1:0.505107122076;IKZF1:0.500470982882;GTF2A1,2:0.497918535963;EGR1..3:0.474362120975;RXRA_VDR{dimer}:0.473476877756;EBF1:0.459454331609;PDX1:0.439043011089;NR6A1:0.429433024607;NR3C1:0.416378681456;POU5F1:0.390683629018;RREB1:0.358003335398;ATF4:0.351680698083;TBP:0.321441997385;STAT5{A,B}:0.316656122983;HOX{A5,B5}:0.31084479881;CREB1:0.310644791036;SP1:0.306973076665;TFDP1:0.295391205557;MTF1:0.293154917027;RFX1:0.280206100961;NFE2L1:0.2755224331;XCPE1{core}:0.269728774803;STAT2,4,6:0.233390374405;NFIL3:0.202610822639;EN1,2:0.188231663586;POU3F1..4:0.182517336843;MYFfamily:0.162778103038;FOXN1:0.155417209484;TEF:0.152451374208;HOX{A6,A7,B6,B7}:0.152192257582;MEF2{A,B,C,D}:0.124221103475;MED-1{core}:0.114140740312;LEF1_TCF7_TCF7L1,2:0.0645275660858;GCM1,2:0.0562334659695;AHR_ARNT_ARNT2:0.0536941767389;IKZF2:0.0492791297399;FOX{F1,F2,J1}:0.0233557897748;HLF:0.0146410327042;FOXO1,3,4:-0.0311856730083;HAND1,2:-0.0362547286455;BACH2:-0.052518344878;REST:-0.0555736516005;bHLH_family:-0.0728347673725;NFIX:-0.0788092901104;CEBPA,B_DDIT3:-0.0896700931254;PAX5:-0.0931107044963;NFE2:-0.0955817279592;NKX2-2,8:-0.101190928639;DBP:-0.108953691867;FOX{D1,D2}:-0.110623532483;FOXP1:-0.139340517777;ATF5_CREB3:-0.150587947247;JUN:-0.151658505024;ONECUT1,2:-0.152334667726;DMAP1_NCOR{1,2}_SMARC:-0.153434076908;NKX6-1,2:-0.160475674893;SOX2:-0.167178600981;FOS_FOS{B,L1}_JUN{B,D}:-0.183652111871;NFE2L2:-0.183900559148;ZNF143:-0.194245179748;MYB:-0.196174425614;NHLH1,2:-0.20521535664;NR1H4:-0.207001332967;FOSL2:-0.215701850265;NKX3-2:-0.239279086437;IRF1,2:-0.251234157442;FOXA2:-0.263531536984;YY1:-0.289405454364;RUNX1..3:-0.291284398264;ATF2:-0.291321306374;PPARG:-0.296371896459;SMAD1..7,9:-0.305410014057;NRF1:-0.365298545838;E2F1..5:-0.368891111944;PAX3,7:-0.372580490681;T:-0.393881680893;NKX2-3_NKX2-5:-0.414196704408;RFX2..5_RFXANK_RFXAP:-0.44528237641;NFKB1_REL_RELA:-0.461563516954;NFY{A,B,C}:-0.466567671286;HNF4A_NR2F1,2:-0.46755473184;FOXP3:-0.475691969481;ELK1,4_GABP{A,B1}:-0.475927907204;ZBTB16:-0.484812870104;HNF1A:-0.491949673417;LMO2:-0.492515683569;POU2F1..3:-0.500843081322;ZFP161:-0.501754395443;EP300:-0.504075255635;TGIF1:-0.520552623795;ZNF148:-0.53320079155;AR:-0.535974099714;RORA:-0.538705585002;SPIB:-0.595524336092;FOXQ1:-0.621797168106;SREBF1,2:-0.63050852164;SNAI1..3:-0.634685258973;FOXM1:-0.652001824617;PBX1:-0.669064208492;TLX2:-0.674523129284;PITX1..3:-0.680281844175;BREu{core}:-0.718063847301;ADNP_IRX_SIX_ZHX:-0.745491123551;SPI1:-0.771326365754;POU6F1:-0.777143244247;CDX1,2,4:-0.786120901891;IRF7:-0.817750800682;HOXA9_MEIS1:-0.826666382582;ALX1:-0.83038599834;ELF1,2,4:-0.871965933611;PRRX1,2:-0.87575280093;ETS1,2:-0.913933306434;HBP1_HMGB_SSRP1_UBTF:-0.984461679606;NR5A1,2:-0.984788470283;ZEB1:-0.985274906712;STAT1,3:-0.986466840568;SOX{8,9,10}:-1.0055443138;OCT4_SOX2{dimer}:-1.07665096183;ESRRA:-1.0766918085;GATA6:-1.10206930669;VSX1,2:-1.11980966381;PAX2:-1.14648383678;PAX6:-1.19872917513;POU1F1:-1.22608304816;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.23461465424;CUX2:-1.28332205549;CRX:-1.40953954776;NANOG:-1.45643892468;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.45740799303;MYOD1:-1.83929551811 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10813-111B3;search_select_hide=table117:FF:10813-111B3 | |||
}} | }} | ||
Latest revision as of 15:06, 3 June 2020
| Name: | normal embryonic palatal mesenchymal cell line:HEPM |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11894 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11894
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11894
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.219 |
| 10 | 10 | 0.667 |
| 100 | 100 | 0.754 |
| 101 | 101 | 0.73 |
| 102 | 102 | 0.338 |
| 103 | 103 | 0.36 |
| 104 | 104 | 0.846 |
| 105 | 105 | 0.262 |
| 106 | 106 | 0.482 |
| 107 | 107 | 0.418 |
| 108 | 108 | 0.737 |
| 109 | 109 | 0.234 |
| 11 | 11 | 0.911 |
| 110 | 110 | 0.509 |
| 111 | 111 | 0.214 |
| 112 | 112 | 0.678 |
| 113 | 113 | 0.557 |
| 114 | 114 | 0.631 |
| 115 | 115 | 2.33578e-4 |
| 116 | 116 | 0.355 |
| 117 | 117 | 0.244 |
| 118 | 118 | 0.694 |
| 119 | 119 | 0.287 |
| 12 | 12 | 0.262 |
| 120 | 120 | 0.271 |
| 121 | 121 | 0.396 |
| 122 | 122 | 0.0126 |
| 123 | 123 | 0.0496 |
| 124 | 124 | 0.631 |
| 125 | 125 | 0.399 |
| 126 | 126 | 0.294 |
| 127 | 127 | 0.477 |
| 128 | 128 | 0.604 |
| 129 | 129 | 0.18 |
| 13 | 13 | 0.247 |
| 130 | 130 | 0.879 |
| 131 | 131 | 0.891 |
| 132 | 132 | 0.032 |
| 133 | 133 | 0.812 |
| 134 | 134 | 0.177 |
| 135 | 135 | 0.0779 |
| 136 | 136 | 0.732 |
| 137 | 137 | 0.119 |
| 138 | 138 | 0.539 |
| 139 | 139 | 0.364 |
| 14 | 14 | 0.107 |
| 140 | 140 | 0.0941 |
| 141 | 141 | 0.291 |
| 142 | 142 | 0.271 |
| 143 | 143 | 0.596 |
| 144 | 144 | 0.231 |
| 145 | 145 | 0.576 |
| 146 | 146 | 0.145 |
| 147 | 147 | 0.239 |
| 148 | 148 | 0.152 |
| 149 | 149 | 0.313 |
| 15 | 15 | 0.0594 |
| 150 | 150 | 0.581 |
| 151 | 151 | 0.274 |
| 152 | 152 | 0.037 |
| 153 | 153 | 0.614 |
| 154 | 154 | 0.814 |
| 155 | 155 | 0.731 |
| 156 | 156 | 0.33 |
| 157 | 157 | 0.319 |
| 158 | 158 | 0.0211 |
| 159 | 159 | 0.603 |
| 16 | 16 | 0.169 |
| 160 | 160 | 0.915 |
| 161 | 161 | 0.575 |
| 162 | 162 | 0.918 |
| 163 | 163 | 0.225 |
| 164 | 164 | 0.526 |
| 165 | 165 | 0.245 |
| 166 | 166 | 0.017 |
| 167 | 167 | 0.631 |
| 168 | 168 | 0.171 |
| 169 | 169 | 0.482 |
| 17 | 17 | 0.635 |
| 18 | 18 | 0.983 |
| 19 | 19 | 0.0214 |
| 2 | 2 | 0.998 |
| 20 | 20 | 0.809 |
| 21 | 21 | 0.634 |
| 22 | 22 | 0.766 |
| 23 | 23 | 0.611 |
| 24 | 24 | 0.215 |
| 25 | 25 | 0.188 |
| 26 | 26 | 0.658 |
| 27 | 27 | 0.57 |
| 28 | 28 | 0.213 |
| 29 | 29 | 0.609 |
| 3 | 3 | 0.392 |
| 30 | 30 | 0.901 |
| 31 | 31 | 0.74 |
| 32 | 32 | 9.46976e-17 |
| 33 | 33 | 1 |
| 34 | 34 | 0.209 |
| 35 | 35 | 0.619 |
| 36 | 36 | 0.0747 |
| 37 | 37 | 0.426 |
| 38 | 38 | 0.151 |
| 39 | 39 | 0.736 |
| 4 | 4 | 0.299 |
| 40 | 40 | 0.0289 |
| 41 | 41 | 0.149 |
| 42 | 42 | 0.324 |
| 43 | 43 | 0.393 |
| 44 | 44 | 0.192 |
| 45 | 45 | 0.255 |
| 46 | 46 | 0.649 |
| 47 | 47 | 0.175 |
| 48 | 48 | 0.512 |
| 49 | 49 | 0.175 |
| 5 | 5 | 0.489 |
| 50 | 50 | 0.938 |
| 51 | 51 | 0.59 |
| 52 | 52 | 0.831 |
| 53 | 53 | 0.123 |
| 54 | 54 | 0.995 |
| 55 | 55 | 0.271 |
| 56 | 56 | 0.541 |
| 57 | 57 | 0.549 |
| 58 | 58 | 0.0815 |
| 59 | 59 | 0.991 |
| 6 | 6 | 0.507 |
| 60 | 60 | 0.58 |
| 61 | 61 | 0.549 |
| 62 | 62 | 0.252 |
| 63 | 63 | 0.945 |
| 64 | 64 | 0.847 |
| 65 | 65 | 0.825 |
| 66 | 66 | 0.0704 |
| 67 | 67 | 0.485 |
| 68 | 68 | 0.957 |
| 69 | 69 | 0.623 |
| 7 | 7 | 0.13 |
| 70 | 70 | 0.298 |
| 71 | 71 | 0.395 |
| 72 | 72 | 0.662 |
| 73 | 73 | 0.324 |
| 74 | 74 | 0.971 |
| 75 | 75 | 0.382 |
| 76 | 76 | 0.998 |
| 77 | 77 | 0.898 |
| 78 | 78 | 0.0345 |
| 79 | 79 | 0.00717 |
| 8 | 8 | 0.556 |
| 80 | 80 | 0.0491 |
| 81 | 81 | 0.961 |
| 82 | 82 | 0.776 |
| 83 | 83 | 0.389 |
| 84 | 84 | 0.96 |
| 85 | 85 | 0.318 |
| 86 | 86 | 0.751 |
| 87 | 87 | 0.84 |
| 88 | 88 | 0.477 |
| 89 | 89 | 0.557 |
| 9 | 9 | 0.738 |
| 90 | 90 | 0.304 |
| 91 | 91 | 0.967 |
| 92 | 92 | 0.804 |
| 93 | 93 | 0.418 |
| 94 | 94 | 0.791 |
| 95 | 95 | 0.967 |
| 96 | 96 | 0.952 |
| 97 | 97 | 0.682 |
| 98 | 98 | 0.0614 |
| 99 | 99 | 0.165 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11894
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
CL:0000134 mesenchymal cell
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100669 embryonic cell line sample
UBERON:0005705 primary palate mesenchyme
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001474 (bone element)
0002384 (connective tissue)
0000033 (head)
0000479 (tissue)
0005705 (primary palate mesenchyme)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0010313 (neural crest-derived structure)
0001062 (anatomical entity)
0000480 (anatomical group)
0000075 (subdivision of skeletal system)
0004765 (skeletal element)
0008193 (pneumatized bone)
0001708 (jaw skeleton)
0010912 (subdivision of skeleton)
0011159 (primary subdivision of cranial skeletal system)
0002514 (intramembranous bone)
0003457 (head bone)
0008907 (dermal bone)
0008001 (irregular bone)
0007213 (mesenchyme derived from head neural crest)
0009891 (facial mesenchyme)
0003104 (mesenchyme)
0007914 (head or neck bone)
0010317 (germ layer / neural crest derived structure)
0007375 (roof of mouth)
0003323 (mesenchyme of upper jaw)
0010258 (mesenchyme from rhombencephalic neural crest)
0005253 (head mesenchyme)
0007842 (membrane bone)
0004089 (midface)
0000153 (anterior region of body)
0007811 (craniocervical region)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0001456 (face)
0008895 (splanchnocranium)
0002397 (maxilla)
0003113 (dermatocranium)
0011137 (axial skeletal system)
0003277 (skeleton of upper jaw)
0009142 (entire embryonic mesenchyme)
0010323 (cranial skeletal system)
0001709 (upper jaw region)
0002244 (premaxilla)
0005620 (primary palate)
0010364 (dermal skeleton)
0004288 (skeleton)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100669 (embryonic cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0005062 (neural fold)
UBERON:0007284 (presumptive neural plate)
UBERON:0003099 (cranial neural crest)
UBERON:0003852 (rhombencephalon neural crest)
UBERON:0010316 (germ layer / neural crest)
