UBERON:0001709

Name:	upper jaw region
Namespace:	FANTOM
Definition:	"The dorsal portion of the first pharyngeal arch, comprising the upper jaw." [Wikipedia:Upper_jaw, ZFIN:curator]
Xrefs:	Expandlinks: AAO:0000620 EHDAA2:0002118 EHDAA:8025 EMAPA:17924 FMA:54397 [ 200px-Gray189.png] MA:0001908 ncithesaurus:Upper_Jaw VHOG:0000454 XAO:0003087
Synonyms:	"dorsal mandibular arch" RELATED [] "dorsal pharyngeal arch 1" RELATED INCONSISTENT [] "dorsal visceral arch 1" EXACT [ZFA:0001272] "palatoquadrate arch" EXACT [] "upper pharyngeal jaw" EXACT [ZFA:0001272] "upper pharyngeal jaws" RELATED []
Comments:	AO notes: Note isa/partof difference MA/FMA. See notes for jaw w.r.t skeletal element vs subdivision of head
Alt_id:	UBERON:FMA_54397-MA_0001908-XAO_0003087-ZFA_0001272
Subset:	uberon_slim vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

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Parents

is_a:	UBERON:0011595(jaw region)
part_of:	UBERON:0004089(midface)

Children

part of:	UBERON:0003277 (skeleton of upper jaw),UBERON:0003323 (mesenchyme of upper jaw),UBERON:0011597 (bone of upper jaw)

Ontology Tree: Loaded from BioPortal

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FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

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Human (Homo sapiens)

• 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001709 (upper jaw region), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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P-value	FFCP	Short description

P-value	FFCP	Short description
5.42e-195	FFCP PHASE2:Hg19::chr17:54893192..54893195,-	p14@C17orf67
5.42e-195	FFCP PHASE1:Hg19::chr17:54893192..54893195,-	p14@C17orf67
9.37e-99	FFCP PHASE1:Hg19::chr8:57353655..57353662,-	p@chr8:57353655..57353662, -
9.37e-99	FFCP PHASE1:Hg19::chr17:54893213..54893220,-	p12@C17orf67
9.37e-99	FFCP PHASE1:Hg19::chr17:54893269..54893278,-	p11@C17orf67
9.37e-99	FFCP PHASE2:Hg19::chr17:54893213..54893220,-	p12@C17orf67
9.37e-99	FFCP PHASE2:Hg19::chr8:57353655..57353662,-	p@chr8:57353655..57353662, -
9.37e-99	FFCP PHASE1:Hg19::chr17:54893292..54893300,-	p13@C17orf67
9.37e-99	FFCP PHASE2:Hg19::chr17:54893269..54893278,-	p11@C17orf67
9.37e-99	FFCP PHASE2:Hg19::chr17:54893292..54893300,-	p13@C17orf67
2.39e-66	FFCP PHASE2:Hg19::chr4:151503647..151503656,+	p14@MAB21L2
2.39e-66	FFCP PHASE1:Hg19::chr5:75912402..75912418,-	p@chr5:75912402..75912418, -
2.39e-66	FFCP PHASE2:Hg19::chr5:75912402..75912418,-	p@chr5:75912402..75912418, -
2.39e-66	FFCP PHASE1:Hg19::chr4:151503647..151503656,+	p14@MAB21L2
4.66e-66	FFCP PHASE1:Hg19::chr4:151505582..151505614,+	p@chr4:151505582..151505614, +
4.66e-66	FFCP PHASE2:Hg19::chr4:151505582..151505614,+	p@chr4:151505582..151505614, +
1.46e-50	FFCP PHASE2:Hg19::chr8:57354278..57354286,+	p@chr8:57354278..57354286, +
1.46e-50	FFCP PHASE2:Hg19::chr17:54893196..54893207,-	p9@C17orf67
1.46e-50	FFCP PHASE2:Hg19::chr3:157823323..157823328,+	p17@RSRC1
1.46e-50	FFCP PHASE1:Hg19::chr3:157823323..157823328,+	p17@RSRC1
1.46e-50	FFCP PHASE1:Hg19::chr8:57354278..57354286,+	p@chr8:57354278..57354286, +
1.46e-50	FFCP PHASE1:Hg19::chr17:54893196..54893207,-	p9@C17orf67
2.42e-50	FFCP PHASE1:Hg19::chr8:57802672..57802682,-	p@chr8:57802672..57802682, -
2.42e-50	FFCP PHASE2:Hg19::chr8:57802672..57802682,-	p@chr8:57802672..57802682, -
3.99e-50	FFCP PHASE1:Hg19::chr12:85673913..85673919,+	p7@ALX1
3.99e-50	FFCP PHASE2:Hg19::chr5:75913767..75913778,-	p@chr5:75913767..75913778, -
3.99e-50	FFCP PHASE2:Hg19::chr17:76930661..76930674,+	p1@AK123925
3.99e-50	FFCP PHASE2:Hg19::chr12:85673913..85673919,+	p7@ALX1
3.99e-50	FFCP PHASE1:Hg19::chr5:75913767..75913778,-	p@chr5:75913767..75913778, -
3.99e-50	FFCP PHASE1:Hg19::chr17:76930661..76930674,+	p1@AK123925
6.58e-50	FFCP PHASE1:Hg19::chr13:28961248..28961262,-	p23@FLT1
6.58e-50	FFCP PHASE1:Hg19::chr2:33519090..33519092,+	p@chr2:33519090..33519092, +
6.58e-50	FFCP PHASE2:Hg19::chr13:28961248..28961262,-	p23@FLT1
6.58e-50	FFCP PHASE2:Hg19::chr2:33519090..33519092,+	p@chr2:33519090..33519092, +
6.62e-41	FFCP PHASE1:Hg19::chr8:57354143..57354152,+	p@chr8:57354143..57354152, +
6.62e-41	FFCP PHASE1:Hg19::chr8:57353666..57353675,-	p@chr8:57353666..57353675, -
6.62e-41	FFCP PHASE2:Hg19::chr8:57354143..57354152,+	p@chr8:57354143..57354152, +
6.62e-41	FFCP PHASE2:Hg19::chr8:57353779..57353790,-	p@chr8:57353779..57353790, -
6.62e-41	FFCP PHASE2:Hg19::chr8:57353666..57353675,-	p@chr8:57353666..57353675, -
6.62e-41	FFCP PHASE1:Hg19::chr8:57353779..57353790,-	p@chr8:57353779..57353790, -
1.48e-40	FFCP PHASE1:Hg19::chr20:49253452..49253461,-	p12@FAM65C
1.48e-40	FFCP PHASE1:Hg19::chr1:6615391..6615401,+	p2@TAS1R1
1.48e-40	FFCP PHASE2:Hg19::chr20:49253452..49253461,-	p12@FAM65C
1.48e-40	FFCP PHASE1:Hg19::chr1:75600308..75600316,+	p8@LHX8
1.48e-40	FFCP PHASE2:Hg19::chr1:6615391..6615401,+	p2@TAS1R1
1.48e-40	FFCP PHASE2:Hg19::chr1:75600308..75600316,+	p8@LHX8
2.21e-40	FFCP PHASE2:Hg19::chr16:67687543..67687559,-	p@chr16:67687543..67687559, -
2.21e-40	FFCP PHASE1:Hg19::chr5:75912831..75912842,-	p@chr5:75912831..75912842, -
2.21e-40	FFCP PHASE1:Hg19::chr16:67687543..67687559,-	p@chr16:67687543..67687559, -
2.21e-40	FFCP PHASE2:Hg19::chr5:75912831..75912842,-	p@chr5:75912831..75912842, -
3.3e-40	FFCP PHASE2:Hg19::chr6:46190219..46190230,-	p@chr6:46190219..46190230, -
3.3e-40	FFCP PHASE1:Hg19::chr9:125165007..125165016,+	p@chr9:125165007..125165016, +
3.3e-40	FFCP PHASE1:Hg19::chr6:46190219..46190230,-	p@chr6:46190219..46190230, -
3.3e-40	FFCP PHASE2:Hg19::chr9:125165007..125165016,+	p@chr9:125165007..125165016, +
1.84e-34	FFCP PHASE2:Hg19::chr8:57359557..57359570,-	p5@PENK
1.84e-34	FFCP PHASE1:Hg19::chr4:8594472..8594473,+	p4@CPZ
1.84e-34	FFCP PHASE1:Hg19::chr10:15760985..15760992,-	p@chr10:15760985..15760992, -
1.84e-34	FFCP PHASE2:Hg19::chr4:8594472..8594473,+	p4@CPZ
1.84e-34	FFCP PHASE1:Hg19::chr8:57359557..57359570,-	p5@PENK
1.84e-34	FFCP PHASE2:Hg19::chr10:15760985..15760992,-	p@chr10:15760985..15760992, -
2.58e-34	FFCP PHASE2:Hg19::chr14:61125018..61125037,-	p9@SIX1
2.58e-34	FFCP PHASE1:Hg19::chr14:61125018..61125037,-	p9@SIX1
5.05e-34	FFCP PHASE1:Hg19::chr6:134327986..134327991,-	p@chr6:134327986..134327991, -
5.05e-34	FFCP PHASE2:Hg19::chr6:134327986..134327991,-	p@chr6:134327986..134327991, -
7.06e-34	FFCP PHASE1:Hg19::chr13:58291223..58291226,+	p@chr13:58291223..58291226, +
7.06e-34	FFCP PHASE1:Hg19::chr8:57353676..57353688,-	p@chr8:57353676..57353688, -
7.06e-34	FFCP PHASE2:Hg19::chr13:58291223..58291226,+	p@chr13:58291223..58291226, +
7.06e-34	FFCP PHASE2:Hg19::chr8:57353676..57353688,-	p@chr8:57353676..57353688, -
9.85e-34	FFCP PHASE1:Hg19::chr5:127873659..127873667,-	p12@FBN2
9.85e-34	FFCP PHASE1:Hg19::chr5:19721484..19721507,-	p@chr5:19721484..19721507, -
9.85e-34	FFCP PHASE1:Hg19::chrX:133792540..133792551,-	p4@PLAC1
9.85e-34	FFCP PHASE2:Hg19::chr5:127873659..127873667,-	p12@FBN2
9.85e-34	FFCP PHASE2:Hg19::chr5:19721484..19721507,-	p@chr5:19721484..19721507, -
9.85e-34	FFCP PHASE2:Hg19::chrX:133792540..133792551,-	p4@PLAC1
7.48e-30	FFCP PHASE2:Hg19::chr8:57353982..57353991,-	p@chr8:57353982..57353991, -
7.48e-30	FFCP PHASE1:Hg19::chr8:57353804..57353821,-	p@chr8:57353804..57353821, -
7.48e-30	FFCP PHASE1:Hg19::chr8:57354360..57354367,+	p@chr8:57354360..57354367, +
7.48e-30	FFCP PHASE2:Hg19::chr8:57353804..57353821,-	p@chr8:57353804..57353821, -
7.48e-30	FFCP PHASE1:Hg19::chr8:57353982..57353991,-	p@chr8:57353982..57353991, -
7.48e-30	FFCP PHASE2:Hg19::chr8:57354360..57354367,+	p@chr8:57354360..57354367, +
9.99e-30	FFCP PHASE2:Hg19::chr10:15762107..15762114,-	p10@ITGA8
9.99e-30	FFCP PHASE1:Hg19::chr3:157824322..157824334,-	p7@SHOX2
9.99e-30	FFCP PHASE1:Hg19::chr10:15762107..15762114,-	p10@ITGA8
9.99e-30	FFCP PHASE2:Hg19::chr3:157824322..157824334,-	p7@SHOX2
1.33e-29	FFCP PHASE2:Hg19::chrX:132670143..132670152,-	p@chrX:132670143..132670152, -
1.33e-29	FFCP PHASE2:Hg19::chr17:79071218..79071221,-	p@chr17:79071218..79071221, -
1.33e-29	FFCP PHASE2:Hg19::chr22:28193943..28193956,-	p@chr22:28193943..28193956, -
1.33e-29	FFCP PHASE1:Hg19::chrX:132670143..132670152,-	p@chrX:132670143..132670152, -
1.33e-29	FFCP PHASE1:Hg19::chr17:79071218..79071221,-	p@chr17:79071218..79071221, -
1.33e-29	FFCP PHASE1:Hg19::chr22:28193943..28193956,-	p@chr22:28193943..28193956, -
1.78e-29	FFCP PHASE2:Hg19::chr1:21904551..21904569,-	p@chr1:21904551..21904569, -
1.78e-29	FFCP PHASE1:Hg19::chr1:21904551..21904569,-	p@chr1:21904551..21904569, -
3.16e-29	FFCP PHASE1:Hg19::chr8:57359975..57359992,-	p@chr8:57359975..57359992, -
3.16e-29	FFCP PHASE2:Hg19::chr1:156470861..156470868,-	p18@MEF2D
3.16e-29	FFCP PHASE2:Hg19::chr14:89044406..89044416,+	p@chr14:89044406..89044416, +
3.16e-29	FFCP PHASE2:Hg19::chr8:57359975..57359992,-	p@chr8:57359975..57359992, -
3.16e-29	FFCP PHASE1:Hg19::chr1:156470861..156470868,-	p18@MEF2D
3.16e-29	FFCP PHASE1:Hg19::chr14:89044406..89044416,+	p@chr14:89044406..89044416, +
4.2e-29	FFCP PHASE2:Hg19::chr13:36046127..36046134,+	p@chr13:36046127..36046134, +
4.2e-29	FFCP PHASE1:Hg19::chr15:52606315..52606320,-	p@chr15:52606315..52606320, -

Showing 1 to 100 of 100 entries

Property "Property value" (as page type) with input value "UBPROP:0000001 "Superior maxillary arch located on the anterior and lateral sides of the skull.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.