FF:10723-110A3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005900 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007984;DRR008856;DRZ000281;DRZ001666;DRZ011631;DRZ013016 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0006562,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | |||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0100819,FF:0100790,FF:0100834 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0100819,FF:0101120 | |fonse_cell_line=FF:0100819,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100819,FF:0101120 | |fonse_cell_line_closure=FF:0100819,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pharyngeal%2520carcinoma%2520cell%2520line%253aDetroit%2520562.CNhs11849.10723-110A3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pharyngeal%2520carcinoma%2520cell%2520line%253aDetroit%2520562.CNhs11849.10723-110A3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pharyngeal%2520carcinoma%2520cell%2520line%253aDetroit%2520562.CNhs11849.10723-110A3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pharyngeal%2520carcinoma%2520cell%2520line%253aDetroit%2520562.CNhs11849.10723-110A3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pharyngeal%2520carcinoma%2520cell%2520line%253aDetroit%2520562.CNhs11849.10723-110A3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10723-110A3 | |id=FF:10723-110A3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100834 | ||
|is_obsolete= | |||
|library_id=CNhs11849 | |||
|library_id_phase_based=2:CNhs11849 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10723 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10723 | |||
|name=pharyngeal carcinoma cell line:Detroit 562 | |name=pharyngeal carcinoma cell line:Detroit 562 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11849,LSID830,release010,COMPLETED | |profile_hcage=CNhs11849,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.190592453021924,0,0,0,0,0.32315498636445,0.052217621604872,-0.0302301587790926,0.120299619951962,0,0,0,0.00667064524087754,0,0,0,0,0,0,0.052217621604872,0,0,0.124134230099674,0,0,0,0.0494126573710457,0,0.179499344180044,0,0,0.14450065066924,0,0,0,0,0,0,0,0,0,0,0.247131973414421,0,0.0284789365393933,0.052217621604872,0,0,0,0,0,0,0,0.728673722039386,0,0,0,0,0,0.049943712882966,0,0.284192544801242,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.052217621604872,0,0,0,0,0,0,0,0,0.0988253147420914,0.0494126573710457,0,0,0.0237080227546065,0,0.026436032209029,0,0,0,0,-0.0584468268118252,0.064237581459049,0.026108810802436,0,0,0,-0.0980353512377064,0.191486257967324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296664677436959,0.0988253147420914,0,0,-0.0466172020181444,-0.28422117959523,0,0,0.136687091968121,0,0.0209831842897461,0 | |||
|repeat_enrich_byname=0,0,0.0988253147420914,0,-0.0980353512377064,0,0,0.214529171984106,0,0.0988253147420914,0,0,0.052217621604872,0,0,0,-0.194961253680693,0,-0.0490557786011765,0.13394209792463,0,0,-0.23496499969596,0,0,0,0.0240552198279358,0,0,0,0,0.140912384324609,0.42275010135727,0,0.0904998327352937,0,0,0,0,0.118891847954156,-0.253254609293535,0.052217621604872,0.0382571589259062,0.377053484474965,0,0.115712767269062,0,0,-0.0091920241500967,0,-0.120879483793741,-0.0827201683234173,0.0255203853116147,-0.036249776420206,-0.00349487517631003,0,0,0,0.091268196792164,0.373192147816237,0,0,-0.095671040949438,-0.155240807758223,0,0,-0.391044581551635,0,-0.19479103730201,0.0838582628511278,0,0.230435218881183,0,0,0,0,0,0.052217621604872,0.0105280996306401,0.052217621604872,0,0.0494126573710457,0,-0.0313846560190007,0.156484419771867,0.0684153339045129,0.179278752006845,0.425030440150832,0,0.210021092871131,0.0248744855962572,0.0652857841279924,0.091566356236857,0.015337792549303,-0.137594714426482,-0.176050011700084,0,-0.203564412267822,0.0278356701520375,0.153225103635978,-0.129928139789984,-0.147401849371139,0.0571502538645741,0.026436032209029,-0.180153556752364,-0.53914065569959,0.0782251134467492,0.128761338935863,-0.0504601447500274,-0.181377169968129,0.199205332844671,0,0.277457240448102,0,0.393672513573418,0,0.052217621604872,0.119084516533657,0.150265777397791,-0.0521002384648045,0.118838639634372,0.095489683957206,-0.0487613854953464,0.309468565760801,-0.210304479482173,0.114969114616029,0.30760953223921,0,0,0.051518075090633,0.157919580500583,0.0973884717516341,-0.0348130471695687,0,0.16434209897875,0.146184910906738,0.052217621604872,-0.248788230763412,0.185620957776162,0,0.12485951747655,0.250482096483366,0,0,0,0,0,0.175485964840105,-0.292360169615745,-0.134030246813453,0,-0.0141553820988902,0.0326635114068372,0.000381320325199053,0,0.153588923880558,-0.00509751313278559,0.00772835249453202,-0.0781046326121298,0,-0.0577684999406668,-0.161686163555705,-0.0240783120143942,0.128475162918098,-0.0584468268118252,0.0274711604876506,0.0397645171963905,0.115775952723075,0.148866073452449,0,-0.0881268324752877,0,-0.88354475051838,0.375450151538971,0.0418858604992345,-0.355161908002099,0.140912384324609,-0.100217823909945,0,0.145420074918466,0,0.312180671530243,0.2456427912456,0.00610837097164701,0.199773684082798,0,0.256689208980337,0.79803034381612,0.0988253147420914,0.0435556081600627,-0.0509948797896596,0.332410552822349,0.230817822709208,0.38103514537735,0.131843277585247,0.0491518209159021,0,0.0137879740833842,0,0,0.00400721409055549,0.0703264670914357,0.052217621604872,-0.112928549779375,-0.0742272088209883,-0.0533460728854596,0.0633076785719107,0.052217621604872,0,0.743612613856642,0,0,0.783384888031336,-0.0231850665297282,0.284766342165078,-0.112413957162147,-0.0447879672530782,0.732523197086496,0,0,0.128274738890649,0,0.121250334926368,0,0,-0.026523852008607,-0.116628112990133,0,0,0,0,0,0,0,0,0,0,0,0.153222207985511,-0.077376089768346,0,0.174329076362049,0,0.0988253147420914,0,0,0.0988253147420914,0.0606151804254747,0,0,0.0616341620329763,-0.0748613233438603,-0.0241921009343288,0.138728620224051,0,0,0,-0.00119423056936854,0.129173990727625,0.052217621604872,0.0474160455092131,0.052217621604872,0.166205276411174,0.052217621604872,0,-0.0339233681843394,0,0,0,0.0896393760034225,-0.057730457053664,-0.206468418649959,0,0.052217621604872,0,0.168443343950543,0,0,0,0.0124665561203873,0.165383736287998,0,0,-0.00146171689893415,0,-0.101504880831071,0.132947292437265,0,-0.11216938455214,-0.0736270621976929,0.908994570633245,0,0.357482083155677,0.0161101086582144,0,0,-0.198540771140197,0,0.214529171984106,0.005184034856319,0,0,0,0,0,0,0.166870393644091,0.026108810802436,0,0.0391326631390848,0,0,0,0,0.0988253147420914,0,0,0,0.0695858996193233,0.00660125808358103,0.0762773052881416,0,0,0,0.128924871664835,0.149674797509646,0,0.148872620999353,0.341639792923191,0,0,0.026108810802436,0,0,0.052217621604872,0,0,0.323637499289804,0,0,0,0,0,0.284192544801242,0,0.052217621604872,0,0.381184906043847,0.141773925161833,0,0,-0.0302301587790926,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0711014644305758,-0.358331260494651,0,0,0,0,0,0.052217621604872,0,0.0309692066497339,0,0.0988253147420914,0,0,-0.0616667521041052,0,0,0,0.298864373559255,0,0.32315498636445,0,0.179278752006845,0,0,0,0.0833193446332579,0.0494126573710457,0,0,0,0,0,0,1.09686201169721,0,0,0,0,0,0,0,0.203593738073993,0,0.121408197957566,0.0895487325578334,0,0,0.0578782103715135,0,0,0,0,0,0,0.0391157681337772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0988253147420914,0,0,0,0,0,0,0.0550074648682718,0,0,0,0,0,0,0,0.179499344180044,0,0,0.00679250494156531,0,0,0,0,0.00144242287312665,0,0.192959078494677,0.140526315497016,0.0287941124471708,0,0,0,-0.028276761680019,0,0,0.052217621604872,0,0.416695629031935,0,0,0,0,0,0,0,0,0.660613929120326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124134230099674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.445397745552333,0,0,0,0.05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| |||
|rna_box=110 | |rna_box=110 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=61.38059 | |rna_weight_ug=61.38059 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CCL-138 | |sample_cell_catalog=CCL-138 | ||
|sample_cell_line=Detroit 562 | |sample_cell_line=Detroit 562 | ||
| Line 69: | Line 91: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.89758288719738e-213!GO:0005737;cytoplasm;3.41790673243784e-194!GO:0043226;organelle;1.81448642000667e-166!GO:0043229;intracellular organelle;7.92254648300214e-166!GO:0043231;intracellular membrane-bound organelle;2.78712255551348e-165!GO:0043227;membrane-bound organelle;3.26881152235816e-165!GO:0044422;organelle part;1.3056625428217e-134!GO:0044444;cytoplasmic part;1.62922565898836e-134!GO:0044446;intracellular organelle part;4.96813049900979e-133!GO:0032991;macromolecular complex;9.65458054957321e-92!GO:0005515;protein binding;2.2433990559806e-82!GO:0030529;ribonucleoprotein complex;9.28092793898024e-78!GO:0044237;cellular metabolic process;1.55287313469792e-73!GO:0044238;primary metabolic process;3.16614360605238e-72!GO:0005739;mitochondrion;1.09235673889547e-67!GO:0043170;macromolecule metabolic process;3.38253342150429e-66!GO:0003723;RNA binding;8.73603898437474e-63!GO:0043233;organelle lumen;1.87447256925947e-62!GO:0031974;membrane-enclosed lumen;1.87447256925947e-62!GO:0044428;nuclear part;3.73297413284949e-61!GO:0031090;organelle membrane;6.60804178590698e-55!GO:0019538;protein metabolic process;1.35616431880496e-54!GO:0005634;nucleus;1.90631611865961e-54!GO:0044267;cellular protein metabolic process;2.55721037432683e-48!GO:0005840;ribosome;2.55721037432683e-48!GO:0044260;cellular macromolecule metabolic process;6.78496238850142e-48!GO:0043234;protein complex;3.32492855754032e-46!GO:0016043;cellular component organization and biogenesis;3.54559781904692e-46!GO:0006412;translation;1.35293211753617e-45!GO:0033036;macromolecule localization;9.22902984216457e-44!GO:0015031;protein transport;5.34683661525715e-43!GO:0006396;RNA processing;2.04073979915072e-42!GO:0044429;mitochondrial part;2.55364993911394e-42!GO:0009058;biosynthetic process;6.27528201620706e-42!GO:0003735;structural constituent of ribosome;1.57857851116991e-41!GO:0008104;protein localization;8.59780623300044e-41!GO:0045184;establishment of protein localization;3.03117141233151e-40!GO:0009059;macromolecule biosynthetic process;7.73341112857441e-40!GO:0005829;cytosol;8.98419858872757e-40!GO:0044249;cellular biosynthetic process;4.08991411959948e-38!GO:0031967;organelle envelope;9.7750696562893e-38!GO:0031975;envelope;1.90660651002327e-37!GO:0031981;nuclear lumen;3.81581869103316e-36!GO:0033279;ribosomal subunit;2.08463528150354e-35!GO:0043283;biopolymer metabolic process;5.44286802288478e-34!GO:0046907;intracellular transport;1.7393871542647e-33!GO:0016071;mRNA metabolic process;3.12568587660271e-33!GO:0008380;RNA splicing;6.26947304860948e-30!GO:0043228;non-membrane-bound organelle;6.45357752261826e-30!GO:0043232;intracellular non-membrane-bound organelle;6.45357752261826e-30!GO:0065003;macromolecular complex assembly;7.64896838215176e-30!GO:0006886;intracellular protein transport;1.79485928544301e-29!GO:0006397;mRNA processing;4.62573338576857e-28!GO:0006996;organelle organization and biogenesis;6.76654590132458e-28!GO:0005740;mitochondrial envelope;5.08768973603647e-27!GO:0022607;cellular component assembly;7.77131336633611e-26!GO:0019866;organelle inner membrane;2.28509879269867e-25!GO:0031966;mitochondrial membrane;2.6679980085432e-25!GO:0006259;DNA metabolic process;8.24385545501067e-25!GO:0012505;endomembrane system;1.06714257671641e-24!GO:0010467;gene expression;2.01656337061427e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.28428415101763e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.17983551537669e-24!GO:0051649;establishment of cellular localization;3.0566078849768e-23!GO:0005743;mitochondrial inner membrane;3.06803813186588e-23!GO:0005654;nucleoplasm;3.40777179075281e-23!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.06061639796289e-23!GO:0051641;cellular localization;9.26006513497546e-23!GO:0006119;oxidative phosphorylation;5.10397178246219e-22!GO:0005681;spliceosome;7.6438004242451e-22!GO:0000166;nucleotide binding;1.96270636619725e-21!GO:0044445;cytosolic part;2.28982136227229e-20!GO:0005783;endoplasmic reticulum;3.42655817911469e-20!GO:0044455;mitochondrial membrane part;8.68944830882246e-20!GO:0015934;large ribosomal subunit;1.77749583507479e-19!GO:0007049;cell cycle;2.05102446736156e-19!GO:0044451;nucleoplasm part;3.98003424014639e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.93218215634829e-18!GO:0016462;pyrophosphatase activity;1.93218215634829e-18!GO:0048770;pigment granule;2.39878962318831e-18!GO:0042470;melanosome;2.39878962318831e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;2.55708615976371e-18!GO:0016874;ligase activity;3.21765003227324e-18!GO:0043285;biopolymer catabolic process;3.84803025819994e-18!GO:0031980;mitochondrial lumen;4.29551554311224e-18!GO:0005759;mitochondrial matrix;4.29551554311224e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;4.418456606924e-18!GO:0017111;nucleoside-triphosphatase activity;4.85007105693448e-18!GO:0019941;modification-dependent protein catabolic process;5.59773424638291e-18!GO:0043632;modification-dependent macromolecule catabolic process;5.59773424638291e-18!GO:0006457;protein folding;7.65049912381649e-18!GO:0006511;ubiquitin-dependent protein catabolic process;1.03204145991228e-17!GO:0044257;cellular protein catabolic process;1.65502193919068e-17!GO:0044265;cellular macromolecule catabolic process;1.7322058631101e-17!GO:0030163;protein catabolic process;2.26217952295103e-17!GO:0043412;biopolymer modification;6.01806856339507e-17!GO:0015935;small ribosomal subunit;6.21990763313069e-17!GO:0005794;Golgi apparatus;7.17722724276961e-17!GO:0044432;endoplasmic reticulum part;7.62117917566231e-17!GO:0009057;macromolecule catabolic process;9.16032708660057e-17!GO:0008134;transcription factor binding;1.12183916674514e-16!GO:0005746;mitochondrial respiratory chain;3.73242935185135e-16!GO:0006512;ubiquitin cycle;4.08351191753707e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.31394322505222e-16!GO:0006605;protein targeting;5.99392359515854e-16!GO:0012501;programmed cell death;6.79312687153041e-16!GO:0006915;apoptosis;1.22671971061001e-15!GO:0005761;mitochondrial ribosome;1.41413672132494e-15!GO:0000313;organellar ribosome;1.41413672132494e-15!GO:0051186;cofactor metabolic process;2.79413027132386e-15!GO:0006464;protein modification process;3.51397804996564e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.526198071041e-15!GO:0017076;purine nucleotide binding;4.11287543752899e-15!GO:0022618;protein-RNA complex assembly;4.83738985933834e-15!GO:0050136;NADH dehydrogenase (quinone) activity;5.26305804580709e-15!GO:0003954;NADH dehydrogenase activity;5.26305804580709e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.26305804580709e-15!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.39067199326923e-14!GO:0032553;ribonucleotide binding;3.0326735543236e-14!GO:0032555;purine ribonucleotide binding;3.0326735543236e-14!GO:0044248;cellular catabolic process;3.21768084371257e-14!GO:0022402;cell cycle process;3.39879076444069e-14!GO:0006974;response to DNA damage stimulus;3.47266494457565e-14!GO:0008219;cell death;9.62213166679643e-14!GO:0016265;death;9.62213166679643e-14!GO:0005730;nucleolus;2.74250974335375e-13!GO:0005694;chromosome;3.74309896280286e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.77341068853416e-13!GO:0006732;coenzyme metabolic process;3.84629761263486e-13!GO:0048193;Golgi vesicle transport;3.9784053813757e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.26303565999428e-13!GO:0051082;unfolded protein binding;5.00867142438107e-13!GO:0030964;NADH dehydrogenase complex (quinone);5.94908451087788e-13!GO:0045271;respiratory chain complex I;5.94908451087788e-13!GO:0005747;mitochondrial respiratory chain complex I;5.94908451087788e-13!GO:0042775;organelle ATP synthesis coupled electron transport;6.20023600342767e-13!GO:0042773;ATP synthesis coupled electron transport;6.20023600342767e-13!GO:0009055;electron carrier activity;6.21109186154186e-13!GO:0005789;endoplasmic reticulum membrane;9.17263387841401e-13!GO:0000278;mitotic cell cycle;1.06729451868978e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.85918432207269e-12!GO:0006366;transcription from RNA polymerase II promoter;2.30696921239724e-12!GO:0008135;translation factor activity, nucleic acid binding;2.67496399483835e-12!GO:0030554;adenyl nucleotide binding;3.1202272010363e-12!GO:0016192;vesicle-mediated transport;7.44821345440072e-12!GO:0043687;post-translational protein modification;8.96156941917934e-12!GO:0005524;ATP binding;1.37026591632457e-11!GO:0032559;adenyl ribonucleotide binding;1.64443849009776e-11!GO:0044427;chromosomal part;1.77278058836797e-11!GO:0006281;DNA repair;2.63145343455929e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;2.63145343455929e-11!GO:0000375;RNA splicing, via transesterification reactions;2.63145343455929e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.63145343455929e-11!GO:0005635;nuclear envelope;2.71583120792464e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.17058890206729e-11!GO:0009719;response to endogenous stimulus;8.55336787174202e-11!GO:0006461;protein complex assembly;1.00487244784387e-10!GO:0043067;regulation of programmed cell death;1.12893528575882e-10!GO:0051276;chromosome organization and biogenesis;1.18209448808751e-10!GO:0042981;regulation of apoptosis;1.30906125741703e-10!GO:0031965;nuclear membrane;1.44446367189402e-10!GO:0016887;ATPase activity;1.73408570228481e-10!GO:0008639;small protein conjugating enzyme activity;2.171402347094e-10!GO:0006260;DNA replication;2.20557090025093e-10!GO:0044453;nuclear membrane part;2.54604702697855e-10!GO:0006913;nucleocytoplasmic transport;2.71494406801064e-10!GO:0042254;ribosome biogenesis and assembly;3.08242542516468e-10!GO:0003743;translation initiation factor activity;3.84996439177061e-10!GO:0004842;ubiquitin-protein ligase activity;4.06782371289641e-10!GO:0048523;negative regulation of cellular process;4.10524924950951e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.52037132811208e-10!GO:0003712;transcription cofactor activity;5.13543467865264e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;5.60776590555673e-10!GO:0051169;nuclear transport;6.45098875569537e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.4584123319619e-10!GO:0008565;protein transporter activity;7.21988167498511e-10!GO:0042623;ATPase activity, coupled;8.0507506471887e-10!GO:0000074;regulation of progression through cell cycle;9.95835697325944e-10!GO:0019787;small conjugating protein ligase activity;1.00460836445628e-09!GO:0051726;regulation of cell cycle;1.11042113006492e-09!GO:0003676;nucleic acid binding;1.13507474282478e-09!GO:0006413;translational initiation;2.16856028169522e-09!GO:0006446;regulation of translational initiation;2.18525662178516e-09!GO:0006323;DNA packaging;2.25105902032396e-09!GO:0051188;cofactor biosynthetic process;2.40776527348568e-09!GO:0016604;nuclear body;3.43072656183941e-09!GO:0044431;Golgi apparatus part;4.29431573194668e-09!GO:0000087;M phase of mitotic cell cycle;4.74372508289021e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.70508771558355e-09!GO:0009056;catabolic process;5.82688331933851e-09!GO:0007067;mitosis;6.6323780673589e-09!GO:0006399;tRNA metabolic process;7.10630647848279e-09!GO:0005793;ER-Golgi intermediate compartment;8.49711304781719e-09!GO:0048519;negative regulation of biological process;8.95219545003235e-09!GO:0017038;protein import;1.27337449245107e-08!GO:0000785;chromatin;1.33906079085217e-08!GO:0016881;acid-amino acid ligase activity;1.47530071786517e-08!GO:0051301;cell division;1.6542214497695e-08!GO:0015986;ATP synthesis coupled proton transport;2.14189891899607e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.14189891899607e-08!GO:0005643;nuclear pore;2.22467971757377e-08!GO:0022403;cell cycle phase;2.36271835575107e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.44099599921763e-08!GO:0005768;endosome;3.42181329447888e-08!GO:0004386;helicase activity;3.67671855122958e-08!GO:0009108;coenzyme biosynthetic process;3.69060879313675e-08!GO:0007005;mitochondrion organization and biogenesis;4.97288204026138e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.86313534819946e-08!GO:0019829;cation-transporting ATPase activity;6.32080810762107e-08!GO:0065002;intracellular protein transport across a membrane;6.40158587224306e-08!GO:0016070;RNA metabolic process;6.52820352060701e-08!GO:0009060;aerobic respiration;9.81646090617905e-08!GO:0043069;negative regulation of programmed cell death;1.01188531626438e-07!GO:0016787;hydrolase activity;1.03173118306037e-07!GO:0032446;protein modification by small protein conjugation;1.11685945733962e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.33710163637804e-07!GO:0000139;Golgi membrane;1.44204306725207e-07!GO:0006163;purine nucleotide metabolic process;1.49513830405014e-07!GO:0005773;vacuole;1.6102788647344e-07!GO:0016567;protein ubiquitination;1.75508209827452e-07!GO:0009259;ribonucleotide metabolic process;2.0613838425118e-07!GO:0050657;nucleic acid transport;2.07706798724056e-07!GO:0051236;establishment of RNA localization;2.07706798724056e-07!GO:0050658;RNA transport;2.07706798724056e-07!GO:0006793;phosphorus metabolic process;2.34103398965998e-07!GO:0006796;phosphate metabolic process;2.34103398965998e-07!GO:0051246;regulation of protein metabolic process;2.44174799431032e-07!GO:0043066;negative regulation of apoptosis;2.47213464968855e-07!GO:0043566;structure-specific DNA binding;2.53317697368528e-07!GO:0048522;positive regulation of cellular process;2.83505075253197e-07!GO:0006403;RNA localization;2.88360732566408e-07!GO:0006164;purine nucleotide biosynthetic process;2.98496427367054e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.20806572615335e-07!GO:0016491;oxidoreductase activity;3.32704320294302e-07!GO:0008026;ATP-dependent helicase activity;3.32774276932003e-07!GO:0016740;transferase activity;3.50121490570597e-07!GO:0006754;ATP biosynthetic process;3.82797865109842e-07!GO:0006753;nucleoside phosphate metabolic process;3.82797865109842e-07!GO:0000323;lytic vacuole;3.98387641450922e-07!GO:0005764;lysosome;3.98387641450922e-07!GO:0005667;transcription factor complex;4.21547785925331e-07!GO:0045333;cellular respiration;5.05892493135581e-07!GO:0016607;nuclear speck;5.34457935906297e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.34481745932862e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;5.8765361652526e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.13078911514178e-07!GO:0030120;vesicle coat;6.27606068796345e-07!GO:0030662;coated vesicle membrane;6.27606068796345e-07!GO:0009150;purine ribonucleotide metabolic process;6.6275683329436e-07!GO:0031988;membrane-bound vesicle;6.76684024241248e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.16032721920909e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;7.24904911290985e-07!GO:0004812;aminoacyl-tRNA ligase activity;7.24904911290985e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;7.24904911290985e-07!GO:0048475;coated membrane;7.91050652838423e-07!GO:0030117;membrane coat;7.91050652838423e-07!GO:0009260;ribonucleotide biosynthetic process;8.42703774179102e-07!GO:0046034;ATP metabolic process;8.73907844345958e-07!GO:0016023;cytoplasmic membrane-bound vesicle;9.24946185606746e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.49649342375271e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.49649342375271e-07!GO:0009141;nucleoside triphosphate metabolic process;1.0061609368169e-06!GO:0042802;identical protein binding;1.19609234984325e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.19688250340908e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.19688250340908e-06!GO:0006099;tricarboxylic acid cycle;1.19866357965908e-06!GO:0046356;acetyl-CoA catabolic process;1.19866357965908e-06!GO:0009199;ribonucleoside triphosphate metabolic process;1.2423110955139e-06!GO:0009152;purine ribonucleotide biosynthetic process;1.31009105127322e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.39936387973898e-06!GO:0006333;chromatin assembly or disassembly;1.41759728534962e-06!GO:0006916;anti-apoptosis;1.46879574894137e-06!GO:0046930;pore complex;1.46879574894137e-06!GO:0004298;threonine endopeptidase activity;1.47174098593506e-06!GO:0009109;coenzyme catabolic process;1.53450891751277e-06!GO:0043038;amino acid activation;1.53450891751277e-06!GO:0006418;tRNA aminoacylation for protein translation;1.53450891751277e-06!GO:0043039;tRNA aminoacylation;1.53450891751277e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.55201940830688e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.55201940830688e-06!GO:0006364;rRNA processing;1.65036109761941e-06!GO:0016072;rRNA metabolic process;2.09215679749279e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.15292346041046e-06!GO:0043623;cellular protein complex assembly;2.2220022424949e-06!GO:0000279;M phase;2.2220022424949e-06!GO:0003697;single-stranded DNA binding;2.38386612974065e-06!GO:0045259;proton-transporting ATP synthase complex;2.5563842565226e-06!GO:0065004;protein-DNA complex assembly;2.93724340247539e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.98855229477247e-06!GO:0005770;late endosome;3.33355652499928e-06!GO:0003924;GTPase activity;4.09499410808644e-06!GO:0016564;transcription repressor activity;4.24296239361015e-06!GO:0005762;mitochondrial large ribosomal subunit;4.43741529587387e-06!GO:0000315;organellar large ribosomal subunit;4.43741529587387e-06!GO:0006084;acetyl-CoA metabolic process;4.73072923180947e-06!GO:0051028;mRNA transport;5.28835488491682e-06!GO:0006752;group transfer coenzyme metabolic process;6.40772357004701e-06!GO:0051187;cofactor catabolic process;6.7432519909368e-06!GO:0006613;cotranslational protein targeting to membrane;6.98439349266861e-06!GO:0051170;nuclear import;7.57430453378924e-06!GO:0016310;phosphorylation;7.64076311365638e-06!GO:0031982;vesicle;7.73091658906131e-06!GO:0016779;nucleotidyltransferase activity;8.36032780727171e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;8.43099690783123e-06!GO:0044440;endosomal part;8.49805649968463e-06!GO:0010008;endosome membrane;8.49805649968463e-06!GO:0005798;Golgi-associated vesicle;8.63596452393686e-06!GO:0006091;generation of precursor metabolites and energy;9.61652629695422e-06!GO:0031324;negative regulation of cellular metabolic process;1.03783203406727e-05!GO:0045454;cell redox homeostasis;1.08375634408949e-05!GO:0009117;nucleotide metabolic process;1.11790341811454e-05!GO:0016568;chromatin modification;1.14241511219656e-05!GO:0000151;ubiquitin ligase complex;1.14881546718728e-05!GO:0007243;protein kinase cascade;1.16245335374878e-05!GO:0045786;negative regulation of progression through cell cycle;1.33007165932562e-05!GO:0031410;cytoplasmic vesicle;1.37722894165e-05!GO:0006606;protein import into nucleus;1.73782104043258e-05!GO:0005788;endoplasmic reticulum lumen;2.1474062073143e-05!GO:0003714;transcription corepressor activity;2.16316967740996e-05!GO:0000245;spliceosome assembly;2.24080809599147e-05!GO:0006612;protein targeting to membrane;2.24090727654396e-05!GO:0048518;positive regulation of biological process;2.30040789401206e-05!GO:0006261;DNA-dependent DNA replication;3.03431513473811e-05!GO:0005525;GTP binding;3.78322533627884e-05!GO:0051427;hormone receptor binding;4.80066704210238e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.92819288092271e-05!GO:0050794;regulation of cellular process;5.02152154745334e-05!GO:0006334;nucleosome assembly;6.06147491156273e-05!GO:0003713;transcription coactivator activity;6.46319789772307e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.79587431202801e-05!GO:0009892;negative regulation of metabolic process;6.79587431202801e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;6.84079560393089e-05!GO:0015630;microtubule cytoskeleton;6.84079560393089e-05!GO:0051329;interphase of mitotic cell cycle;8.2299759326977e-05!GO:0030867;rough endoplasmic reticulum membrane;8.72136053907468e-05!GO:0003690;double-stranded DNA binding;9.0922387173713e-05!GO:0000314;organellar small ribosomal subunit;9.79911523076642e-05!GO:0005763;mitochondrial small ribosomal subunit;9.79911523076642e-05!GO:0035257;nuclear hormone receptor binding;9.79911523076642e-05!GO:0006950;response to stress;0.000103622202611423!GO:0016563;transcription activator activity;0.000106195238008905!GO:0005813;centrosome;0.000109719592829861!GO:0043021;ribonucleoprotein binding;0.000119947083686673!GO:0003724;RNA helicase activity;0.000139794436996989!GO:0031497;chromatin assembly;0.000169738700206969!GO:0051789;response to protein stimulus;0.000173991947955747!GO:0006986;response to unfolded protein;0.000173991947955747!GO:0008654;phospholipid biosynthetic process;0.000175251747242559!GO:0048471;perinuclear region of cytoplasm;0.000183505670528994!GO:0005657;replication fork;0.000190620990456203!GO:0051325;interphase;0.000195192172331704!GO:0005819;spindle;0.000215696464076744!GO:0050662;coenzyme binding;0.000217833711437652!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000231793716597624!GO:0004576;oligosaccharyl transferase activity;0.000273315469012475!GO:0005815;microtubule organizing center;0.000301518008004458!GO:0008250;oligosaccharyl transferase complex;0.000323682405706548!GO:0032561;guanyl ribonucleotide binding;0.000362179336058692!GO:0019001;guanyl nucleotide binding;0.000362179336058692!GO:0009967;positive regulation of signal transduction;0.000381443865179348!GO:0008234;cysteine-type peptidase activity;0.000382910468316077!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00038389121742787!GO:0043681;protein import into mitochondrion;0.000397640892767857!GO:0031252;leading edge;0.000400017402623189!GO:0048468;cell development;0.000402889244542412!GO:0006839;mitochondrial transport;0.000450483245733501!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000453225914973083!GO:0007264;small GTPase mediated signal transduction;0.000453555955199988!GO:0016481;negative regulation of transcription;0.000456110007642219!GO:0051168;nuclear export;0.000463933330594719!GO:0016044;membrane organization and biogenesis;0.000482542956446632!GO:0008361;regulation of cell size;0.000485368822319034!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000494232928292392!GO:0019867;outer membrane;0.00049787013194595!GO:0045893;positive regulation of transcription, DNA-dependent;0.000515534179446352!GO:0031968;organelle outer membrane;0.000533119267741997!GO:0019899;enzyme binding;0.000606688161019952!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000640186586385541!GO:0043065;positive regulation of apoptosis;0.000640186586385541!GO:0033116;ER-Golgi intermediate compartment membrane;0.000655712431255338!GO:0003729;mRNA binding;0.000719621223623558!GO:0015992;proton transport;0.000730699973810164!GO:0016853;isomerase activity;0.000733895066503604!GO:0006818;hydrogen transport;0.000741993972790312!GO:0001558;regulation of cell growth;0.000741993972790312!GO:0030036;actin cytoskeleton organization and biogenesis;0.000810926377139434!GO:0043068;positive regulation of programmed cell death;0.000826514995357364!GO:0005741;mitochondrial outer membrane;0.000869468776991379!GO:0016049;cell growth;0.000875466877520247!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000922290473777345!GO:0005769;early endosome;0.000927436632109461!GO:0003899;DNA-directed RNA polymerase activity;0.000965493737214229!GO:0006402;mRNA catabolic process;0.00100329490157264!GO:0005885;Arp2/3 protein complex;0.00102471930395099!GO:0006414;translational elongation;0.00110623021068124!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0011149290414436!GO:0000075;cell cycle checkpoint;0.00113774586986181!GO:0018196;peptidyl-asparagine modification;0.00114757715581381!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00114757715581381!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00115773981995516!GO:0008186;RNA-dependent ATPase activity;0.00121066681610655!GO:0048500;signal recognition particle;0.00126587631218204!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00126587631218204!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00126587631218204!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00126587631218204!GO:0051252;regulation of RNA metabolic process;0.00129739998440537!GO:0030118;clathrin coat;0.00130084589792423!GO:0008033;tRNA processing;0.00130110069104901!GO:0006626;protein targeting to mitochondrion;0.00130411563562725!GO:0048037;cofactor binding;0.00131925928794909!GO:0005048;signal sequence binding;0.0013477427568284!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00135570430082679!GO:0015399;primary active transmembrane transporter activity;0.00135570430082679!GO:0008632;apoptotic program;0.00136733469553145!GO:0030663;COPI coated vesicle membrane;0.00136747566625012!GO:0030126;COPI vesicle coat;0.00136747566625012!GO:0045941;positive regulation of transcription;0.00146789995889173!GO:0015980;energy derivation by oxidation of organic compounds;0.00146840982147638!GO:0030133;transport vesicle;0.00160071512808421!GO:0046983;protein dimerization activity;0.00175791479278641!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0017580865452238!GO:0005684;U2-dependent spliceosome;0.00176094129492589!GO:0019752;carboxylic acid metabolic process;0.00180327409346915!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00189913531778601!GO:0030137;COPI-coated vesicle;0.00197080555157266!GO:0031072;heat shock protein binding;0.00200122403590586!GO:0005791;rough endoplasmic reticulum;0.00206310214309522!GO:0043488;regulation of mRNA stability;0.00212951793085729!GO:0043487;regulation of RNA stability;0.00212951793085729!GO:0030176;integral to endoplasmic reticulum membrane;0.00217869771353842!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00218518944306897!GO:0006082;organic acid metabolic process;0.00221210199154032!GO:0030132;clathrin coat of coated pit;0.00221210199154032!GO:0003684;damaged DNA binding;0.00221245253966827!GO:0007006;mitochondrial membrane organization and biogenesis;0.00236192296315581!GO:0065009;regulation of a molecular function;0.00247956238712708!GO:0051920;peroxiredoxin activity;0.00254365004563758!GO:0006302;double-strand break repair;0.0025889059534855!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00269173969920928!GO:0046489;phosphoinositide biosynthetic process;0.00277874100553023!GO:0006891;intra-Golgi vesicle-mediated transport;0.00277931058222881!GO:0022890;inorganic cation transmembrane transporter activity;0.00288842196685333!GO:0008094;DNA-dependent ATPase activity;0.00305814079425773!GO:0016859;cis-trans isomerase activity;0.00311025237632714!GO:0045045;secretory pathway;0.00320684159097394!GO:0004004;ATP-dependent RNA helicase activity;0.00320947102108539!GO:0007010;cytoskeleton organization and biogenesis;0.00321752736973299!GO:0000049;tRNA binding;0.00322399050987799!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00336979776164148!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00354323074923238!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00354323074923238!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00357232308795093!GO:0051052;regulation of DNA metabolic process;0.00359288778840487!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00369255274965742!GO:0045047;protein targeting to ER;0.00369255274965742!GO:0005905;coated pit;0.00380804254430897!GO:0046483;heterocycle metabolic process;0.00384595347824418!GO:0008312;7S RNA binding;0.00384595347824418!GO:0006118;electron transport;0.00387974888687939!GO:0003682;chromatin binding;0.00406535090143893!GO:0050789;regulation of biological process;0.00406535090143893!GO:0005637;nuclear inner membrane;0.00418483120111186!GO:0000775;chromosome, pericentric region;0.00421751266537004!GO:0006520;amino acid metabolic process;0.00428030344736243!GO:0006672;ceramide metabolic process;0.00430687628986502!GO:0031301;integral to organelle membrane;0.00452426808294012!GO:0048487;beta-tubulin binding;0.00454124805622599!GO:0015631;tubulin binding;0.00457951291369322!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00482956501491397!GO:0046467;membrane lipid biosynthetic process;0.00482956501491397!GO:0009165;nucleotide biosynthetic process;0.00488652916799622!GO:0004197;cysteine-type endopeptidase activity;0.00504089834484898!GO:0030119;AP-type membrane coat adaptor complex;0.00505483920864014!GO:0007040;lysosome organization and biogenesis;0.00511248803539842!GO:0000776;kinetochore;0.00512187580749232!GO:0006401;RNA catabolic process;0.00521914347346473!GO:0046474;glycerophospholipid biosynthetic process;0.00572184477612146!GO:0016363;nuclear matrix;0.00596167266577064!GO:0030131;clathrin adaptor complex;0.0060269396389929!GO:0008139;nuclear localization sequence binding;0.00603034519285287!GO:0035258;steroid hormone receptor binding;0.00631887519529758!GO:0030659;cytoplasmic vesicle membrane;0.00639918764333079!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00653932326810368!GO:0007033;vacuole organization and biogenesis;0.00657104230938193!GO:0006767;water-soluble vitamin metabolic process;0.00663857720699019!GO:0030303;stromelysin 2 activity;0.00666624046068131!GO:0007051;spindle organization and biogenesis;0.00669374803176017!GO:0016197;endosome transport;0.00669374803176017!GO:0043492;ATPase activity, coupled to movement of substances;0.00677781627950759!GO:0030029;actin filament-based process;0.00700439366476688!GO:0044262;cellular carbohydrate metabolic process;0.00702862656096382!GO:0032508;DNA duplex unwinding;0.00705951478485388!GO:0032392;DNA geometric change;0.00705951478485388!GO:0005774;vacuolar membrane;0.00706682468084166!GO:0006733;oxidoreduction coenzyme metabolic process;0.00707717692122567!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00725340054304503!GO:0007088;regulation of mitosis;0.00781639403239905!GO:0031902;late endosome membrane;0.00789121120219573!GO:0000786;nucleosome;0.0083538644521146!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00854938724041046!GO:0030658;transport vesicle membrane;0.00860477783168265!GO:0043284;biopolymer biosynthetic process;0.00879270073020588!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00893474029882358!GO:0008092;cytoskeletal protein binding;0.00897072002473487!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00923546721759991!GO:0016791;phosphoric monoester hydrolase activity;0.00933025638445695!GO:0046519;sphingoid metabolic process;0.00990912881810723!GO:0004721;phosphoprotein phosphatase activity;0.0100480229792152!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0102108074484558!GO:0030384;phosphoinositide metabolic process;0.0102266911063875!GO:0031124;mRNA 3'-end processing;0.0105706751058795!GO:0051540;metal cluster binding;0.010778097265946!GO:0051536;iron-sulfur cluster binding;0.010778097265946!GO:0000059;protein import into nucleus, docking;0.0108493665923093!GO:0006979;response to oxidative stress;0.0112890747895772!GO:0044433;cytoplasmic vesicle part;0.0113887042822408!GO:0003702;RNA polymerase II transcription factor activity;0.0114106830519654!GO:0012506;vesicle membrane;0.0115215897093399!GO:0006650;glycerophospholipid metabolic process;0.0115747131037!GO:0051059;NF-kappaB binding;0.0119724835800559!GO:0006417;regulation of translation;0.0119750526872555!GO:0043022;ribosome binding;0.0120090548898401!GO:0009116;nucleoside metabolic process;0.0120653546672583!GO:0000082;G1/S transition of mitotic cell cycle;0.0120690521862509!GO:0040008;regulation of growth;0.0123253279468197!GO:0004674;protein serine/threonine kinase activity;0.0123253279468197!GO:0030027;lamellipodium;0.0127879112886095!GO:0016272;prefoldin complex;0.0129787738593746!GO:0051087;chaperone binding;0.0129787738593746!GO:0045892;negative regulation of transcription, DNA-dependent;0.0130710708632704!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0134893680342941!GO:0003678;DNA helicase activity;0.0135796463112073!GO:0044452;nucleolar part;0.0138153022094299!GO:0009112;nucleobase metabolic process;0.0139108041998287!GO:0016584;nucleosome positioning;0.0139394983549855!GO:0006892;post-Golgi vesicle-mediated transport;0.0140019211763833!GO:0000792;heterochromatin;0.0142075296819915!GO:0007050;cell cycle arrest;0.0144427161635237!GO:0019843;rRNA binding;0.0150710782614431!GO:0004185;serine carboxypeptidase activity;0.0151054534710444!GO:0008283;cell proliferation;0.0152608413243453!GO:0030880;RNA polymerase complex;0.0153194246211527!GO:0006268;DNA unwinding during replication;0.0155687780027578!GO:0008601;protein phosphatase type 2A regulator activity;0.0155961141872196!GO:0016311;dephosphorylation;0.0157100769801382!GO:0006405;RNA export from nucleus;0.0161728724725381!GO:0005765;lysosomal membrane;0.0169506436142711!GO:0008637;apoptotic mitochondrial changes;0.0170277714042948!GO:0008180;signalosome;0.0170710241470754!GO:0006740;NADPH regeneration;0.0171000287962172!GO:0006098;pentose-phosphate shunt;0.0171000287962172!GO:0044437;vacuolar part;0.0177324827403375!GO:0030125;clathrin vesicle coat;0.0179130156510205!GO:0030665;clathrin coated vesicle membrane;0.0179130156510205!GO:0022408;negative regulation of cell-cell adhesion;0.0183450977332367!GO:0030660;Golgi-associated vesicle membrane;0.0183936436544932!GO:0006284;base-excision repair;0.0184939048865644!GO:0006611;protein export from nucleus;0.0186636726843679!GO:0007093;mitotic cell cycle checkpoint;0.0192297081955926!GO:0051101;regulation of DNA binding;0.0194731480722065!GO:0006506;GPI anchor biosynthetic process;0.0195435969806881!GO:0009081;branched chain family amino acid metabolic process;0.0196675831075399!GO:0051098;regulation of binding;0.0199427015890128!GO:0005832;chaperonin-containing T-complex;0.0200406276754834!GO:0008652;amino acid biosynthetic process;0.020269112964311!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0203712332700701!GO:0031529;ruffle organization and biogenesis;0.0204524985003839!GO:0043433;negative regulation of transcription factor activity;0.0209437816034362!GO:0051656;establishment of organelle localization;0.0218383747815945!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0222840536301623!GO:0000428;DNA-directed RNA polymerase complex;0.0222840536301623!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0223040893313361!GO:0001726;ruffle;0.0226290395699666!GO:0032940;secretion by cell;0.0228957277466683!GO:0006505;GPI anchor metabolic process;0.0235021225118889!GO:0000096;sulfur amino acid metabolic process;0.0236694152816005!GO:0043596;nuclear replication fork;0.0242691564997505!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0247685531230594!GO:0046966;thyroid hormone receptor binding;0.0251875168024923!GO:0051128;regulation of cellular component organization and biogenesis;0.0252111162325501!GO:0006497;protein amino acid lipidation;0.0253264813004168!GO:0000086;G2/M transition of mitotic cell cycle;0.0257025587722099!GO:0030134;ER to Golgi transport vesicle;0.0257906433719756!GO:0016251;general RNA polymerase II transcription factor activity;0.0263723688474059!GO:0006519;amino acid and derivative metabolic process;0.026508671094447!GO:0051287;NAD binding;0.026929525387812!GO:0006984;ER-nuclear signaling pathway;0.0270145133863669!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0273591256380225!GO:0030433;ER-associated protein catabolic process;0.0273591256380225!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0273591256380225!GO:0006607;NLS-bearing substrate import into nucleus;0.0273591256380225!GO:0006275;regulation of DNA replication;0.0274356205220109!GO:0003746;translation elongation factor activity;0.0274356205220109!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0275173804491348!GO:0015002;heme-copper terminal oxidase activity;0.0275173804491348!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0275173804491348!GO:0004129;cytochrome-c oxidase activity;0.0275173804491348!GO:0006144;purine base metabolic process;0.0277915654009056!GO:0006643;membrane lipid metabolic process;0.0280503669070324!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0289582642716449!GO:0010257;NADH dehydrogenase complex assembly;0.0289582642716449!GO:0033108;mitochondrial respiratory chain complex assembly;0.0289582642716449!GO:0006383;transcription from RNA polymerase III promoter;0.0289582642716449!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0293596116048701!GO:0009893;positive regulation of metabolic process;0.0294141848283629!GO:0000159;protein phosphatase type 2A complex;0.0295452650614118!GO:0006917;induction of apoptosis;0.0296173768496075!GO:0005869;dynactin complex;0.0297505524037787!GO:0031123;RNA 3'-end processing;0.0297957081989089!GO:0006378;mRNA polyadenylation;0.030013706148171!GO:0051539;4 iron, 4 sulfur cluster binding;0.0302709925943616!GO:0001836;release of cytochrome c from mitochondria;0.0304674721491723!GO:0022415;viral reproductive process;0.0306360566989501!GO:0000209;protein polyubiquitination;0.0308635424100553!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0315090721316986!GO:0004527;exonuclease activity;0.0315090721316986!GO:0017134;fibroblast growth factor binding;0.0319572883775386!GO:0003725;double-stranded RNA binding;0.0319572883775386!GO:0000339;RNA cap binding;0.0320087498823056!GO:0030833;regulation of actin filament polymerization;0.0320607377925952!GO:0006509;membrane protein ectodomain proteolysis;0.0321504358242532!GO:0033619;membrane protein proteolysis;0.0321504358242532!GO:0006739;NADP metabolic process;0.0321576644565486!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0323504437936027!GO:0032984;macromolecular complex disassembly;0.0324914815304865!GO:0050178;phenylpyruvate tautomerase activity;0.0326807168829596!GO:0045792;negative regulation of cell size;0.0332267364260651!GO:0030521;androgen receptor signaling pathway;0.0333006743194875!GO:0031532;actin cytoskeleton reorganization;0.0333006743194875!GO:0006352;transcription initiation;0.0338369208825439!GO:0031625;ubiquitin protein ligase binding;0.0338795776299829!GO:0046822;regulation of nucleocytoplasmic transport;0.0338795776299829!GO:0003711;transcription elongation regulator activity;0.0340315649013705!GO:0008287;protein serine/threonine phosphatase complex;0.0340809338101744!GO:0050811;GABA receptor binding;0.0345588273016222!GO:0030503;regulation of cell redox homeostasis;0.0348343118397542!GO:0012502;induction of programmed cell death;0.0349960893619256!GO:0008538;proteasome activator activity;0.0351115933171381!GO:0051338;regulation of transferase activity;0.0353215887626799!GO:0017166;vinculin binding;0.0353629399316298!GO:0006769;nicotinamide metabolic process;0.0354845692624287!GO:0009889;regulation of biosynthetic process;0.0361024386072237!GO:0008610;lipid biosynthetic process;0.0373955354736157!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0375532133150229!GO:0030308;negative regulation of cell growth;0.0377380972845994!GO:0030145;manganese ion binding;0.0382004365869825!GO:0019783;small conjugating protein-specific protease activity;0.0382102567022429!GO:0030984;kininogen binding;0.0383878590631114!GO:0004213;cathepsin B activity;0.0383878590631114!GO:0031300;intrinsic to organelle membrane;0.0386746478212038!GO:0009100;glycoprotein metabolic process;0.0390463643708891!GO:0030911;TPR domain binding;0.0396957685571741!GO:0031575;G1/S transition checkpoint;0.0400804555762288!GO:0050790;regulation of catalytic activity;0.0403703923340743!GO:0043414;biopolymer methylation;0.0410948574419201!GO:0000118;histone deacetylase complex;0.0411004388933893!GO:0046128;purine ribonucleoside metabolic process;0.0413779056661536!GO:0042278;purine nucleoside metabolic process;0.0413779056661536!GO:0043189;H4/H2A histone acetyltransferase complex;0.0416994995603554!GO:0003923;GPI-anchor transamidase activity;0.0419143745171954!GO:0016255;attachment of GPI anchor to protein;0.0419143745171954!GO:0042765;GPI-anchor transamidase complex;0.0419143745171954!GO:0005876;spindle microtubule;0.0425404224856109!GO:0006301;postreplication repair;0.0426963462400621!GO:0005784;translocon complex;0.0435285082061363!GO:0007265;Ras protein signal transduction;0.0435873467793335!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0440766015215447!GO:0042158;lipoprotein biosynthetic process;0.044099305539465!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0442863520944885!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0445544249254594!GO:0032906;transforming growth factor-beta2 production;0.0447063544593798!GO:0032909;regulation of transforming growth factor-beta2 production;0.0447063544593798!GO:0019362;pyridine nucleotide metabolic process;0.0447955329992263!GO:0030518;steroid hormone receptor signaling pathway;0.0451469371323062!GO:0008017;microtubule binding;0.0453316833312419!GO:0007034;vacuolar transport;0.0454993982465294!GO:0008629;induction of apoptosis by intracellular signals;0.0458071903545381!GO:0043491;protein kinase B signaling cascade;0.0458661006466955!GO:0043624;cellular protein complex disassembly;0.0462677060677264!GO:0031326;regulation of cellular biosynthetic process;0.0471044919929119!GO:0004235;matrilysin activity;0.0475805171092667!GO:0044438;microbody part;0.0478391823714782!GO:0044439;peroxisomal part;0.0478391823714782!GO:0030127;COPII vesicle coat;0.0481211339715155!GO:0012507;ER to Golgi transport vesicle membrane;0.0481211339715155!GO:0031371;ubiquitin conjugating enzyme complex;0.0485100404731251!GO:0043331;response to dsRNA;0.0486757294499567!GO:0043154;negative regulation of caspase activity;0.0487465734619301!GO:0005938;cell cortex;0.0488601995105659!GO:0006310;DNA recombination;0.0489692938667481!GO:0043241;protein complex disassembly;0.0491930156601551!GO:0004843;ubiquitin-specific protease activity;0.0496805108986798!GO:0009225;nucleotide-sugar metabolic process;0.0497819573136024!GO:0000123;histone acetyltransferase complex;0.0498544440437288 | |||
|sample_id=10723 | |sample_id=10723 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=pharynx | |sample_tissue=pharynx | ||
|top_motifs=ZEB1:2.08261044137;SNAI1..3:2.07937654978;HSF1,2:1.54754963097;ZNF384:1.40590667373;ZBTB16:1.34683712317;CDC5L:1.29570335105;TP53:1.25628674931;FOXQ1:1.24293129579;TEF:1.22965317387;FOXL1:1.21421926375;MYOD1:1.19460430822;POU2F1..3:1.18481822796;TEAD1:1.15685714521;NKX2-1,4:1.15008217951;TBX4,5:1.12940814848;FOX{I1,J2}:1.11602207406;IRF7:1.06892959407;bHLH_family:1.04245486891;ADNP_IRX_SIX_ZHX:1.03270394696;PAX1,9:1.02168587862;NR6A1:0.875411066704;MTE{core}:0.804382129998;NKX3-1:0.800715664359;HIC1:0.778709527929;TFAP2{A,C}:0.747519481452;HIF1A:0.741606523907;TFDP1:0.723308927776;VSX1,2:0.717479477077;TLX1..3_NFIC{dimer}:0.6902316263;ZNF423:0.681984218218;XCPE1{core}:0.671068596773;IRF1,2:0.670363372032;HMGA1,2:0.642563273901;NKX3-2:0.610787533845;SOX2:0.586004274568;TBP:0.584908147344;TFAP2B:0.564275813185;ARID5B:0.562916230503;MYBL2:0.538952112011;GTF2A1,2:0.519691990349;E2F1..5:0.476448751909;FOXP1:0.466771440049;AIRE:0.454651612259;LMO2:0.446022348712;IKZF2:0.425058109503;FOXN1:0.420721481523;CEBPA,B_DDIT3:0.415224051543;PDX1:0.413258739664;TOPORS:0.409455407072;CDX1,2,4:0.404303286649;FOXA2:0.390611157319;SP1:0.384545646956;EGR1..3:0.340671638392;BREu{core}:0.32480278477;POU1F1:0.312084764615;PITX1..3:0.302828126712;IKZF1:0.281245964893;OCT4_SOX2{dimer}:0.278672309584;GFI1B:0.266945312787;NKX2-3_NKX2-5:0.255038722919;ELK1,4_GABP{A,B1}:0.252012578036;PAX4:0.239035365623;TLX2:0.220424665685;POU3F1..4:0.183197240913;NFIL3:0.181836097909;STAT2,4,6:0.181580826883;FOXD3:0.16361065719;ONECUT1,2:0.163561574773;NFKB1_REL_RELA:0.147988175437;SOX17:0.146219637997;MTF1:0.133200165399;MAZ:0.133100546256;UFEwm:0.0981250445446;FOX{D1,D2}:0.0901584724777;NFY{A,B,C}:0.0815400279188;BPTF:0.072056763848;LHX3,4:0.0633956508003;DBP:0.060789597239;ELF1,2,4:0.0593435336704;PAX2:0.0578445482842;FOS_FOS{B,L1}_JUN{B,D}:0.0486518521489;PAX8:0.00757278666472;ZIC1..3:-0.00327398888626;HOXA9_MEIS1:-0.00904947359718;NKX2-2,8:-0.0121059773828;GFI1:-0.0416259233572;NKX6-1,2:-0.073295212523;MED-1{core}:-0.0773427047959;FOSL2:-0.0774675731904;KLF4:-0.0793905952409;DMAP1_NCOR{1,2}_SMARC:-0.0802350351643;ATF4:-0.115249435163;MEF2{A,B,C,D}:-0.12003393999;ESR1:-0.125667359756;HNF4A_NR2F1,2:-0.134965766678;NANOG:-0.137289481605;NFE2:-0.137623279933;SOX{8,9,10}:-0.139540501179;PBX1:-0.1400245761;EVI1:-0.140614650948;HOX{A6,A7,B6,B7}:-0.146326750064;STAT5{A,B}:-0.152972299004;ZNF238:-0.15867537752;FOXO1,3,4:-0.162329984607;SREBF1,2:-0.163274020627;HNF1A:-0.164793054965;CUX2:-0.16798572075;HLF:-0.180792551765;NR1H4:-0.185623871734;FOXM1:-0.190690902771;GLI1..3:-0.208145921465;ATF5_CREB3:-0.213461968468;PRRX1,2:-0.233762546273;GTF2I:-0.256498053976;MYB:-0.266278340818;PATZ1:-0.267094339413;BACH2:-0.269706390884;LEF1_TCF7_TCF7L1,2:-0.272565995604;FOX{F1,F2,J1}:-0.282960607597;ZNF143:-0.291888726959;POU5F1:-0.295642306649;XBP1:-0.303610337359;MYFfamily:-0.308578448197;REST:-0.31455066612;PAX3,7:-0.31704831406;RXR{A,B,G}:-0.322680786525;TFCP2:-0.323204374243;CREB1:-0.326238519777;ZBTB6:-0.331148571705;RFX2..5_RFXANK_RFXAP:-0.332012890408;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.337373654902;PAX6:-0.338846225353;FOXP3:-0.340919815433;NR5A1,2:-0.344854901091;ZFP161:-0.349468547403;SOX5:-0.36483780118;GCM1,2:-0.374944238564;GZF1:-0.385714481327;PRDM1:-0.390890887465;NFE2L2:-0.392733556273;AHR_ARNT_ARNT2:-0.403647821754;HAND1,2:-0.409548038057;ETS1,2:-0.424358191753;ATF2:-0.426858736815;CRX:-0.437006654648;YY1:-0.439330516029;GATA4:-0.440094029593;MZF1:-0.443413852849;GATA6:-0.448658460053;POU6F1:-0.455056070647;RREB1:-0.472329511151;HOX{A5,B5}:-0.475198739434;EBF1:-0.479615531946;SPIB:-0.480970017363;ALX1:-0.492235865165;T:-0.506321635084;JUN:-0.515779970736;PAX5:-0.523764737022;TFAP4:-0.529475911969;RUNX1..3:-0.564998060572;EP300:-0.568466911491;HOX{A4,D4}:-0.570882483418;NRF1:-0.573620927157;TAL1_TCF{3,4,12}:-0.586272486141;ZNF148:-0.616453514632;SPI1:-0.629873264563;TGIF1:-0.633611269071;PPARG:-0.649781239725;ALX4:-0.655379256677;RFX1:-0.663531820191;SRF:-0.690297074559;AR:-0.698625066632;NHLH1,2:-0.702509170607;NFE2L1:-0.705175152758;EN1,2:-0.737207329779;ATF6:-0.797812192224;NFATC1..3:-0.823164953932;RBPJ:-0.888311391663;ESRRA:-0.896662615937;NANOG{mouse}:-0.953365030626;RORA:-0.986846270254;HES1:-1.0759874971;HBP1_HMGB_SSRP1_UBTF:-1.08179467785;MAFB:-1.09830432219;RXRA_VDR{dimer}:-1.10172482761;SMAD1..7,9:-1.1445310692;HMX1:-1.17520853446;NFIX:-1.19077206722;SPZ1:-1.29540116152;NR3C1:-1.37587640623;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.6247353313;STAT1,3:-1.78622897337 | |top_motifs=ZEB1:2.08261044137;SNAI1..3:2.07937654978;HSF1,2:1.54754963097;ZNF384:1.40590667373;ZBTB16:1.34683712317;CDC5L:1.29570335105;TP53:1.25628674931;FOXQ1:1.24293129579;TEF:1.22965317387;FOXL1:1.21421926375;MYOD1:1.19460430822;POU2F1..3:1.18481822796;TEAD1:1.15685714521;NKX2-1,4:1.15008217951;TBX4,5:1.12940814848;FOX{I1,J2}:1.11602207406;IRF7:1.06892959407;bHLH_family:1.04245486891;ADNP_IRX_SIX_ZHX:1.03270394696;PAX1,9:1.02168587862;NR6A1:0.875411066704;MTE{core}:0.804382129998;NKX3-1:0.800715664359;HIC1:0.778709527929;TFAP2{A,C}:0.747519481452;HIF1A:0.741606523907;TFDP1:0.723308927776;VSX1,2:0.717479477077;TLX1..3_NFIC{dimer}:0.6902316263;ZNF423:0.681984218218;XCPE1{core}:0.671068596773;IRF1,2:0.670363372032;HMGA1,2:0.642563273901;NKX3-2:0.610787533845;SOX2:0.586004274568;TBP:0.584908147344;TFAP2B:0.564275813185;ARID5B:0.562916230503;MYBL2:0.538952112011;GTF2A1,2:0.519691990349;E2F1..5:0.476448751909;FOXP1:0.466771440049;AIRE:0.454651612259;LMO2:0.446022348712;IKZF2:0.425058109503;FOXN1:0.420721481523;CEBPA,B_DDIT3:0.415224051543;PDX1:0.413258739664;TOPORS:0.409455407072;CDX1,2,4:0.404303286649;FOXA2:0.390611157319;SP1:0.384545646956;EGR1..3:0.340671638392;BREu{core}:0.32480278477;POU1F1:0.312084764615;PITX1..3:0.302828126712;IKZF1:0.281245964893;OCT4_SOX2{dimer}:0.278672309584;GFI1B:0.266945312787;NKX2-3_NKX2-5:0.255038722919;ELK1,4_GABP{A,B1}:0.252012578036;PAX4:0.239035365623;TLX2:0.220424665685;POU3F1..4:0.183197240913;NFIL3:0.181836097909;STAT2,4,6:0.181580826883;FOXD3:0.16361065719;ONECUT1,2:0.163561574773;NFKB1_REL_RELA:0.147988175437;SOX17:0.146219637997;MTF1:0.133200165399;MAZ:0.133100546256;UFEwm:0.0981250445446;FOX{D1,D2}:0.0901584724777;NFY{A,B,C}:0.0815400279188;BPTF:0.072056763848;LHX3,4:0.0633956508003;DBP:0.060789597239;ELF1,2,4:0.0593435336704;PAX2:0.0578445482842;FOS_FOS{B,L1}_JUN{B,D}:0.0486518521489;PAX8:0.00757278666472;ZIC1..3:-0.00327398888626;HOXA9_MEIS1:-0.00904947359718;NKX2-2,8:-0.0121059773828;GFI1:-0.0416259233572;NKX6-1,2:-0.073295212523;MED-1{core}:-0.0773427047959;FOSL2:-0.0774675731904;KLF4:-0.0793905952409;DMAP1_NCOR{1,2}_SMARC:-0.0802350351643;ATF4:-0.115249435163;MEF2{A,B,C,D}:-0.12003393999;ESR1:-0.125667359756;HNF4A_NR2F1,2:-0.134965766678;NANOG:-0.137289481605;NFE2:-0.137623279933;SOX{8,9,10}:-0.139540501179;PBX1:-0.1400245761;EVI1:-0.140614650948;HOX{A6,A7,B6,B7}:-0.146326750064;STAT5{A,B}:-0.152972299004;ZNF238:-0.15867537752;FOXO1,3,4:-0.162329984607;SREBF1,2:-0.163274020627;HNF1A:-0.164793054965;CUX2:-0.16798572075;HLF:-0.180792551765;NR1H4:-0.185623871734;FOXM1:-0.190690902771;GLI1..3:-0.208145921465;ATF5_CREB3:-0.213461968468;PRRX1,2:-0.233762546273;GTF2I:-0.256498053976;MYB:-0.266278340818;PATZ1:-0.267094339413;BACH2:-0.269706390884;LEF1_TCF7_TCF7L1,2:-0.272565995604;FOX{F1,F2,J1}:-0.282960607597;ZNF143:-0.291888726959;POU5F1:-0.295642306649;XBP1:-0.303610337359;MYFfamily:-0.308578448197;REST:-0.31455066612;PAX3,7:-0.31704831406;RXR{A,B,G}:-0.322680786525;TFCP2:-0.323204374243;CREB1:-0.326238519777;ZBTB6:-0.331148571705;RFX2..5_RFXANK_RFXAP:-0.332012890408;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.337373654902;PAX6:-0.338846225353;FOXP3:-0.340919815433;NR5A1,2:-0.344854901091;ZFP161:-0.349468547403;SOX5:-0.36483780118;GCM1,2:-0.374944238564;GZF1:-0.385714481327;PRDM1:-0.390890887465;NFE2L2:-0.392733556273;AHR_ARNT_ARNT2:-0.403647821754;HAND1,2:-0.409548038057;ETS1,2:-0.424358191753;ATF2:-0.426858736815;CRX:-0.437006654648;YY1:-0.439330516029;GATA4:-0.440094029593;MZF1:-0.443413852849;GATA6:-0.448658460053;POU6F1:-0.455056070647;RREB1:-0.472329511151;HOX{A5,B5}:-0.475198739434;EBF1:-0.479615531946;SPIB:-0.480970017363;ALX1:-0.492235865165;T:-0.506321635084;JUN:-0.515779970736;PAX5:-0.523764737022;TFAP4:-0.529475911969;RUNX1..3:-0.564998060572;EP300:-0.568466911491;HOX{A4,D4}:-0.570882483418;NRF1:-0.573620927157;TAL1_TCF{3,4,12}:-0.586272486141;ZNF148:-0.616453514632;SPI1:-0.629873264563;TGIF1:-0.633611269071;PPARG:-0.649781239725;ALX4:-0.655379256677;RFX1:-0.663531820191;SRF:-0.690297074559;AR:-0.698625066632;NHLH1,2:-0.702509170607;NFE2L1:-0.705175152758;EN1,2:-0.737207329779;ATF6:-0.797812192224;NFATC1..3:-0.823164953932;RBPJ:-0.888311391663;ESRRA:-0.896662615937;NANOG{mouse}:-0.953365030626;RORA:-0.986846270254;HES1:-1.0759874971;HBP1_HMGB_SSRP1_UBTF:-1.08179467785;MAFB:-1.09830432219;RXRA_VDR{dimer}:-1.10172482761;SMAD1..7,9:-1.1445310692;HMX1:-1.17520853446;NFIX:-1.19077206722;SPZ1:-1.29540116152;NR3C1:-1.37587640623;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.6247353313;STAT1,3:-1.78622897337 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10723-110A3;search_select_hide=table117:FF:10723-110A3 | |||
}} | }} | ||
Latest revision as of 15:02, 3 June 2020
| Name: | pharyngeal carcinoma cell line:Detroit 562 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11849 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11849
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11849
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.164 |
| 10 | 10 | 0.422 |
| 100 | 100 | 0.352 |
| 101 | 101 | 0.884 |
| 102 | 102 | 0.525 |
| 103 | 103 | 0.565 |
| 104 | 104 | 0.409 |
| 105 | 105 | 0.826 |
| 106 | 106 | 0.056 |
| 107 | 107 | 0.00817 |
| 108 | 108 | 0.686 |
| 109 | 109 | 0.521 |
| 11 | 11 | 0.0931 |
| 110 | 110 | 0.576 |
| 111 | 111 | 0.778 |
| 112 | 112 | 0.201 |
| 113 | 113 | 0.654 |
| 114 | 114 | 0.0415 |
| 115 | 115 | 0.178 |
| 116 | 116 | 0.462 |
| 117 | 117 | 0.204 |
| 118 | 118 | 0.157 |
| 119 | 119 | 0.915 |
| 12 | 12 | 0.0579 |
| 120 | 120 | 0.908 |
| 121 | 121 | 0.208 |
| 122 | 122 | 0.853 |
| 123 | 123 | 0.804 |
| 124 | 124 | 0.163 |
| 125 | 125 | 0.883 |
| 126 | 126 | 0.834 |
| 127 | 127 | 0.696 |
| 128 | 128 | 0.768 |
| 129 | 129 | 0.754 |
| 13 | 13 | 0.55 |
| 130 | 130 | 0.755 |
| 131 | 131 | 0.663 |
| 132 | 132 | 0.195 |
| 133 | 133 | 0.426 |
| 134 | 134 | 0.258 |
| 135 | 135 | 0.586 |
| 136 | 136 | 0.0122 |
| 137 | 137 | 0.103 |
| 138 | 138 | 0.961 |
| 139 | 139 | 0.0949 |
| 14 | 14 | 0.98 |
| 140 | 140 | 0.776 |
| 141 | 141 | 0.249 |
| 142 | 142 | 0.792 |
| 143 | 143 | 8.87995e-4 |
| 144 | 144 | 0.132 |
| 145 | 145 | 0.632 |
| 146 | 146 | 0.646 |
| 147 | 147 | 0.0692 |
| 148 | 148 | 0.665 |
| 149 | 149 | 0.225 |
| 15 | 15 | 0.21 |
| 150 | 150 | 0.27 |
| 151 | 151 | 0.869 |
| 152 | 152 | 0.00926 |
| 153 | 153 | 0.583 |
| 154 | 154 | 0.491 |
| 155 | 155 | 0.694 |
| 156 | 156 | 0.974 |
| 157 | 157 | 0.813 |
| 158 | 158 | 0.225 |
| 159 | 159 | 0.977 |
| 16 | 16 | 0.772 |
| 160 | 160 | 0.457 |
| 161 | 161 | 0.37 |
| 162 | 162 | 0.326 |
| 163 | 163 | 0.928 |
| 164 | 164 | 0.96 |
| 165 | 165 | 0.665 |
| 166 | 166 | 0.542 |
| 167 | 167 | 0.933 |
| 168 | 168 | 0.693 |
| 169 | 169 | 0.345 |
| 17 | 17 | 0.82 |
| 18 | 18 | 0.164 |
| 19 | 19 | 0.0828 |
| 2 | 2 | 0.966 |
| 20 | 20 | 0.647 |
| 21 | 21 | 0.881 |
| 22 | 22 | 0.151 |
| 23 | 23 | 0.841 |
| 24 | 24 | 0.738 |
| 25 | 25 | 0.275 |
| 26 | 26 | 0.449 |
| 27 | 27 | 0.766 |
| 28 | 28 | 0.92 |
| 29 | 29 | 0.814 |
| 3 | 3 | 0.334 |
| 30 | 30 | 0.211 |
| 31 | 31 | 0.365 |
| 32 | 32 | 0.0315 |
| 33 | 33 | 0.289 |
| 34 | 34 | 0.353 |
| 35 | 35 | 0.0458 |
| 36 | 36 | 0.132 |
| 37 | 37 | 0.379 |
| 38 | 38 | 0.996 |
| 39 | 39 | 0.25 |
| 4 | 4 | 0.132 |
| 40 | 40 | 0.488 |
| 41 | 41 | 0.0236 |
| 42 | 42 | 0.63 |
| 43 | 43 | 0.0451 |
| 44 | 44 | 0.912 |
| 45 | 45 | 0.777 |
| 46 | 46 | 0.181 |
| 47 | 47 | 0.218 |
| 48 | 48 | 0.775 |
| 49 | 49 | 0.00728 |
| 5 | 5 | 0.68 |
| 50 | 50 | 0.696 |
| 51 | 51 | 0.49 |
| 52 | 52 | 0.253 |
| 53 | 53 | 0.471 |
| 54 | 54 | 0.637 |
| 55 | 55 | 0.233 |
| 56 | 56 | 0.746 |
| 57 | 57 | 0.915 |
| 58 | 58 | 0.625 |
| 59 | 59 | 0.237 |
| 6 | 6 | 0.912 |
| 60 | 60 | 0.165 |
| 61 | 61 | 0.569 |
| 62 | 62 | 0.156 |
| 63 | 63 | 0.883 |
| 64 | 64 | 0.701 |
| 65 | 65 | 0.725 |
| 66 | 66 | 0.685 |
| 67 | 67 | 0.233 |
| 68 | 68 | 0.0725 |
| 69 | 69 | 0.421 |
| 7 | 7 | 0.977 |
| 70 | 70 | 0.754 |
| 71 | 71 | 0.57 |
| 72 | 72 | 0.199 |
| 73 | 73 | 0.271 |
| 74 | 74 | 0.00744 |
| 75 | 75 | 0.713 |
| 76 | 76 | 0.802 |
| 77 | 77 | 0.863 |
| 78 | 78 | 0.726 |
| 79 | 79 | 0.465 |
| 8 | 8 | 0.237 |
| 80 | 80 | 0.0398 |
| 81 | 81 | 0.0618 |
| 82 | 82 | 0.00156 |
| 83 | 83 | 0.384 |
| 84 | 84 | 0.391 |
| 85 | 85 | 0.456 |
| 86 | 86 | 0.499 |
| 87 | 87 | 0.0606 |
| 88 | 88 | 0.424 |
| 89 | 89 | 0.901 |
| 9 | 9 | 0.144 |
| 90 | 90 | 0.417 |
| 91 | 91 | 0.165 |
| 92 | 92 | 0.56 |
| 93 | 93 | 0.797 |
| 94 | 94 | 0.145 |
| 95 | 95 | 0.672 |
| 96 | 96 | 0.0444 |
| 97 | 97 | 0.589 |
| 98 | 98 | 0.184 |
| 99 | 99 | 0.919 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11849
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100834 Detroit 562 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0006562 (pharynx)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100819 (pharyngeal cell line sample)
0100790 (pharyngeal cancer cell line sample)
0100834 (Detroit 562 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
