FF:11468-119C1: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00004851 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004851 | ||
|HumanCAGEScanFiles=NCig10051;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Preadipocyte%2520-%2520omental%252c%2520donor1.NCig10051.11468-119C1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Preadipocyte%2520-%2520omental%252c%2520donor1.NCig10051.11468-119C1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Preadipocyte%2520-%2520omental%252c%2520donor1.NCig10051.11468-119C1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.primary_cell.CAGEScan/Preadipocyte%2520-%2520omental%252c%2520donor1.NCig10051.11468-119C1.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008409;DRR009281;DRZ000706;DRZ002091;DRZ012056;DRZ013441 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037081;DRR041447;DRZ007089 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0003688,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000466,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0004923,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0000042,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002417,UBERON:0002358,UBERON:0000916,UBERON:0003684,UBERON:0001178 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002334,CL:0002579 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000137,FF:0000140 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor1.CNhs11065.11468-119C1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor1.CNhs11065.11468-119C1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor1.CNhs11065.11468-119C1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor1.CNhs11065.11468-119C1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Preadipocyte%2520-%2520omental%252c%2520donor1.CNhs11065.11468-119C1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11468-119C1 | |id=FF:11468-119C1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000140 | ||
|is_obsolete= | |||
|library_id=CNhs11065 | |||
|library_id_phase_based=2:CNhs11065 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11468 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10006.CCGTCC.11468 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11468 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10006.CCGTCC.11468 | |||
|name=Preadipocyte - omental, donor1 | |name=Preadipocyte - omental, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 66: | ||
|profile_cagescan=NCig10051,,, | |profile_cagescan=NCig10051,,, | ||
|profile_hcage=CNhs11065,LSID723,release008,COMPLETED | |profile_hcage=CNhs11065,LSID723,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10006,,, | |profile_srnaseq=SRhi10006,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=119 | |rna_box=119 | ||
|rna_catalog_number=N/A | |rna_catalog_number=N/A | ||
| Line 56: | Line 83: | ||
|rna_tube_id=119C1 | |rna_tube_id=119C1 | ||
|rna_weight_ug=11.8 | |rna_weight_ug=11.8 | ||
|rnaseq_library_id=SRhi10006.CCGTCC | |||
|sample_age=58 | |sample_age=58 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=F-OP-F | |sample_cell_catalog=F-OP-F | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 98: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.09282612511634e-227!GO:0005737;cytoplasm;2.86467714564485e-175!GO:0043226;organelle;2.57947696658624e-140!GO:0043229;intracellular organelle;5.75927769893897e-140!GO:0043231;intracellular membrane-bound organelle;1.48049210788418e-139!GO:0043227;membrane-bound organelle;2.27588208399964e-139!GO:0044444;cytoplasmic part;1.53634246999194e-138!GO:0044422;organelle part;3.24792884106034e-102!GO:0044446;intracellular organelle part;7.57945644835968e-101!GO:0005515;protein binding;7.06245060235582e-71!GO:0032991;macromolecular complex;8.06157593379866e-68!GO:0044238;primary metabolic process;2.50128339647653e-65!GO:0044237;cellular metabolic process;2.78520642381945e-64!GO:0030529;ribonucleoprotein complex;7.34863846142899e-63!GO:0043170;macromolecule metabolic process;5.87559534352679e-57!GO:0005739;mitochondrion;1.28894734841952e-55!GO:0043233;organelle lumen;2.89804987768605e-55!GO:0031974;membrane-enclosed lumen;2.89804987768605e-55!GO:0031090;organelle membrane;3.33107505056898e-52!GO:0044428;nuclear part;3.05898802015624e-49!GO:0003723;RNA binding;6.59150240780726e-48!GO:0019538;protein metabolic process;5.40937491633868e-45!GO:0015031;protein transport;2.18524628987611e-42!GO:0033036;macromolecule localization;1.4133274299912e-40!GO:0044260;cellular macromolecule metabolic process;4.79162162581637e-40!GO:0045184;establishment of protein localization;2.42639785261663e-39!GO:0005840;ribosome;2.64813506217083e-39!GO:0044267;cellular protein metabolic process;7.13266319499687e-39!GO:0006412;translation;5.18085234020052e-38!GO:0008104;protein localization;5.76834735535543e-38!GO:0044429;mitochondrial part;5.15569979069253e-37!GO:0009058;biosynthetic process;1.06577266817357e-36!GO:0005634;nucleus;1.35272942086165e-36!GO:0016043;cellular component organization and biogenesis;4.00609930427921e-36!GO:0003735;structural constituent of ribosome;2.19748083562367e-34!GO:0005829;cytosol;6.51181841915732e-34!GO:0031967;organelle envelope;7.94764178823155e-34!GO:0031975;envelope;1.13949277101547e-33!GO:0043234;protein complex;3.5023371914749e-33!GO:0006396;RNA processing;1.10338022652615e-32!GO:0046907;intracellular transport;1.26532372143625e-32!GO:0044249;cellular biosynthetic process;5.62777277464525e-32!GO:0009059;macromolecule biosynthetic process;4.97994279480404e-31!GO:0031981;nuclear lumen;7.52967560215717e-30!GO:0033279;ribosomal subunit;1.10634256498018e-29!GO:0006886;intracellular protein transport;2.14151484228979e-28!GO:0016071;mRNA metabolic process;5.53940805486015e-28!GO:0005783;endoplasmic reticulum;2.03477684806197e-26!GO:0043283;biopolymer metabolic process;2.94649803311743e-26!GO:0010467;gene expression;1.47312757929303e-25!GO:0008380;RNA splicing;2.81414308803788e-25!GO:0005740;mitochondrial envelope;3.92167247224639e-25!GO:0031966;mitochondrial membrane;4.43704757948831e-24!GO:0006397;mRNA processing;1.13793868123338e-23!GO:0012505;endomembrane system;8.71471957881556e-23!GO:0019866;organelle inner membrane;3.60193567802775e-22!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.21553977654142e-22!GO:0005743;mitochondrial inner membrane;1.55349531841771e-21!GO:0044432;endoplasmic reticulum part;1.14857999139748e-20!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.00069270613306e-20!GO:0006457;protein folding;4.2091592053185e-20!GO:0065003;macromolecular complex assembly;4.65882278752182e-20!GO:0006119;oxidative phosphorylation;1.665617912879e-19!GO:0051649;establishment of cellular localization;2.1373761264691e-19!GO:0051641;cellular localization;2.29360302257125e-19!GO:0005654;nucleoplasm;6.01891480003736e-19!GO:0048770;pigment granule;1.48156848195596e-18!GO:0042470;melanosome;1.48156848195596e-18!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.53981787204549e-18!GO:0005794;Golgi apparatus;1.93251461120571e-18!GO:0022607;cellular component assembly;5.87197298410248e-18!GO:0005681;spliceosome;7.06703198668802e-18!GO:0044445;cytosolic part;1.55282849575676e-17!GO:0044455;mitochondrial membrane part;2.49300420940149e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.23525444310105e-16!GO:0016462;pyrophosphatase activity;4.96809329194677e-16!GO:0016817;hydrolase activity, acting on acid anhydrides;6.23433142898643e-16!GO:0044451;nucleoplasm part;7.58124948953736e-16!GO:0006996;organelle organization and biogenesis;8.84615937443594e-16!GO:0015934;large ribosomal subunit;9.75404040116504e-16!GO:0048193;Golgi vesicle transport;1.504202807904e-15!GO:0008134;transcription factor binding;1.91514445997813e-15!GO:0000166;nucleotide binding;2.27410484951105e-15!GO:0017111;nucleoside-triphosphatase activity;2.50851697232495e-15!GO:0016874;ligase activity;3.40448380196748e-15!GO:0051186;cofactor metabolic process;3.71433203906213e-15!GO:0006512;ubiquitin cycle;4.0705499643919e-15!GO:0015935;small ribosomal subunit;9.00411147371893e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;2.01567740287286e-14!GO:0051082;unfolded protein binding;2.11586396448717e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.14397593275728e-14!GO:0031980;mitochondrial lumen;2.32525312277096e-14!GO:0005759;mitochondrial matrix;2.32525312277096e-14!GO:0016192;vesicle-mediated transport;2.67906802887137e-14!GO:0006605;protein targeting;3.73163206049125e-14!GO:0022618;protein-RNA complex assembly;3.86837626840172e-14!GO:0019941;modification-dependent protein catabolic process;4.20905816400445e-14!GO:0043632;modification-dependent macromolecule catabolic process;4.20905816400445e-14!GO:0005746;mitochondrial respiratory chain;4.49844573289409e-14!GO:0044257;cellular protein catabolic process;4.53564851641985e-14!GO:0006511;ubiquitin-dependent protein catabolic process;6.01096458901563e-14!GO:0044265;cellular macromolecule catabolic process;6.08809591503131e-14!GO:0005789;endoplasmic reticulum membrane;7.01125654678169e-14!GO:0043228;non-membrane-bound organelle;1.89028921432892e-13!GO:0043232;intracellular non-membrane-bound organelle;1.89028921432892e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.00876601589839e-13!GO:0043285;biopolymer catabolic process;3.02924920374511e-13!GO:0000502;proteasome complex (sensu Eukaryota);6.57269000713281e-13!GO:0008135;translation factor activity, nucleic acid binding;8.94655217060226e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.45109025185148e-12!GO:0003954;NADH dehydrogenase activity;2.45109025185148e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.45109025185148e-12!GO:0005730;nucleolus;2.8050251425307e-12!GO:0030163;protein catabolic process;3.57603021442741e-12!GO:0006732;coenzyme metabolic process;3.90818637655008e-12!GO:0009057;macromolecule catabolic process;5.57444436572543e-12!GO:0044248;cellular catabolic process;5.57444436572543e-12!GO:0009055;electron carrier activity;8.59217474551027e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.34246623781198e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.49414639975628e-11!GO:0043412;biopolymer modification;1.62856743646302e-11!GO:0005793;ER-Golgi intermediate compartment;1.74664141227167e-11!GO:0005761;mitochondrial ribosome;2.98811101844135e-11!GO:0000313;organellar ribosome;2.98811101844135e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.75596233792237e-11!GO:0042775;organelle ATP synthesis coupled electron transport;8.09330119435976e-11!GO:0042773;ATP synthesis coupled electron transport;8.09330119435976e-11!GO:0030964;NADH dehydrogenase complex (quinone);9.83933938226334e-11!GO:0045271;respiratory chain complex I;9.83933938226334e-11!GO:0005747;mitochondrial respiratory chain complex I;9.83933938226334e-11!GO:0006464;protein modification process;9.91693460025957e-11!GO:0017076;purine nucleotide binding;1.0317656745e-10!GO:0032553;ribonucleotide binding;1.23854687881898e-10!GO:0032555;purine ribonucleotide binding;1.23854687881898e-10!GO:0003712;transcription cofactor activity;1.53776049325896e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.747016784696e-10!GO:0008565;protein transporter activity;2.98071580438608e-10!GO:0012501;programmed cell death;6.85275911987555e-10!GO:0005635;nuclear envelope;1.33649956467845e-09!GO:0006915;apoptosis;1.33649956467845e-09!GO:0009259;ribonucleotide metabolic process;1.50926585299382e-09!GO:0003743;translation initiation factor activity;1.71858662053961e-09!GO:0005788;endoplasmic reticulum lumen;1.93284161717046e-09!GO:0016070;RNA metabolic process;1.98180574408214e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.56500001073128e-09!GO:0006413;translational initiation;3.01197600688731e-09!GO:0008639;small protein conjugating enzyme activity;3.29488718283257e-09!GO:0019787;small conjugating protein ligase activity;3.86939830422464e-09!GO:0006446;regulation of translational initiation;4.74956112986178e-09!GO:0009150;purine ribonucleotide metabolic process;4.90907521806291e-09!GO:0008219;cell death;5.14037638870694e-09!GO:0016265;death;5.14037638870694e-09!GO:0005768;endosome;5.5698693543859e-09!GO:0004842;ubiquitin-protein ligase activity;5.64154728199331e-09!GO:0048523;negative regulation of cellular process;6.14617055301966e-09!GO:0043687;post-translational protein modification;6.90231600428229e-09!GO:0006163;purine nucleotide metabolic process;7.31445993616651e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;7.51741372314646e-09!GO:0000375;RNA splicing, via transesterification reactions;7.51741372314646e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.51741372314646e-09!GO:0031965;nuclear membrane;8.40203650311819e-09!GO:0003676;nucleic acid binding;8.58949746037718e-09!GO:0005773;vacuole;1.06591512241847e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.0804355412512e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.27505459869693e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.40898809503649e-08!GO:0006913;nucleocytoplasmic transport;1.55568122568104e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.09029590601515e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.09029590601515e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.20760343540269e-08!GO:0009260;ribonucleotide biosynthetic process;2.35226110728526e-08!GO:0044431;Golgi apparatus part;2.35226110728526e-08!GO:0030120;vesicle coat;2.68133690091902e-08!GO:0030662;coated vesicle membrane;2.68133690091902e-08!GO:0051169;nuclear transport;2.71738985637933e-08!GO:0006888;ER to Golgi vesicle-mediated transport;2.76286547476509e-08!GO:0009141;nucleoside triphosphate metabolic process;2.76286547476509e-08!GO:0048475;coated membrane;3.09575850785138e-08!GO:0030117;membrane coat;3.09575850785138e-08!GO:0016491;oxidoreductase activity;3.1610348625398e-08!GO:0006164;purine nucleotide biosynthetic process;3.406537776249e-08!GO:0006259;DNA metabolic process;4.00661764455461e-08!GO:0016881;acid-amino acid ligase activity;4.06922010506093e-08!GO:0015986;ATP synthesis coupled proton transport;4.49185478888559e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.49185478888559e-08!GO:0016604;nuclear body;4.50328197172757e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.52271833015231e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.52271833015231e-08!GO:0006461;protein complex assembly;7.74930941724155e-08!GO:0003714;transcription corepressor activity;7.89706560090693e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.26224134483808e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.26224134483808e-08!GO:0009060;aerobic respiration;1.01043235157058e-07!GO:0005524;ATP binding;1.06920530269375e-07!GO:0032559;adenyl ribonucleotide binding;1.29458860468815e-07!GO:0030554;adenyl nucleotide binding;1.3541165084218e-07!GO:0017038;protein import;1.40803077568932e-07!GO:0016887;ATPase activity;1.41538347325766e-07!GO:0009056;catabolic process;1.74949044717993e-07!GO:0008654;phospholipid biosynthetic process;1.75639835673524e-07!GO:0045333;cellular respiration;1.81682995258389e-07!GO:0000323;lytic vacuole;1.90315238019302e-07!GO:0005764;lysosome;1.90315238019302e-07!GO:0019829;cation-transporting ATPase activity;2.08140108617029e-07!GO:0051188;cofactor biosynthetic process;2.09189026441221e-07!GO:0046034;ATP metabolic process;2.2095383556746e-07!GO:0044453;nuclear membrane part;2.23652380028407e-07!GO:0003924;GTPase activity;2.40679433419521e-07!GO:0048519;negative regulation of biological process;2.66314586712089e-07!GO:0031988;membrane-bound vesicle;2.76207531877969e-07!GO:0042623;ATPase activity, coupled;3.00484543426212e-07!GO:0042254;ribosome biogenesis and assembly;3.04267233122695e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.18113690262669e-07!GO:0016607;nuclear speck;4.29982797388319e-07!GO:0008361;regulation of cell size;5.71711017725617e-07!GO:0043069;negative regulation of programmed cell death;6.43990731313778e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.82809012069094e-07!GO:0006366;transcription from RNA polymerase II promoter;7.11769160633737e-07!GO:0016564;transcription repressor activity;7.30884460936299e-07!GO:0031982;vesicle;7.73049112129563e-07!GO:0006754;ATP biosynthetic process;7.98551362534413e-07!GO:0006753;nucleoside phosphate metabolic process;7.98551362534413e-07!GO:0007005;mitochondrion organization and biogenesis;8.99097724927035e-07!GO:0016049;cell growth;9.3698175434462e-07!GO:0006399;tRNA metabolic process;9.65884992658305e-07!GO:0043066;negative regulation of apoptosis;1.00734093587241e-06!GO:0031410;cytoplasmic vesicle;1.01478838381941e-06!GO:0015078;hydrogen ion transmembrane transporter activity;1.12491777524871e-06!GO:0005798;Golgi-associated vesicle;1.18793626286972e-06!GO:0051789;response to protein stimulus;1.78005401667411e-06!GO:0006986;response to unfolded protein;1.78005401667411e-06!GO:0044440;endosomal part;2.07119785019832e-06!GO:0010008;endosome membrane;2.07119785019832e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.08598191398807e-06!GO:0006974;response to DNA damage stimulus;2.17531272486314e-06!GO:0006099;tricarboxylic acid cycle;2.36530497603935e-06!GO:0046356;acetyl-CoA catabolic process;2.36530497603935e-06!GO:0065002;intracellular protein transport across a membrane;2.60448232191974e-06!GO:0051187;cofactor catabolic process;2.76893846431185e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.21038196699033e-06!GO:0004812;aminoacyl-tRNA ligase activity;3.21038196699033e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.21038196699033e-06!GO:0051246;regulation of protein metabolic process;3.45791303062314e-06!GO:0031252;leading edge;3.66967051012305e-06!GO:0009109;coenzyme catabolic process;3.86852032300181e-06!GO:0043038;amino acid activation;3.93068256001128e-06!GO:0006418;tRNA aminoacylation for protein translation;3.93068256001128e-06!GO:0043039;tRNA aminoacylation;3.93068256001128e-06!GO:0000151;ubiquitin ligase complex;4.76423831426739e-06!GO:0000139;Golgi membrane;5.01084429913192e-06!GO:0032446;protein modification by small protein conjugation;5.2563085811531e-06!GO:0016567;protein ubiquitination;5.36964147765175e-06!GO:0016469;proton-transporting two-sector ATPase complex;5.73738774026717e-06!GO:0001558;regulation of cell growth;6.1331775219815e-06!GO:0009108;coenzyme biosynthetic process;6.31701572492189e-06!GO:0006091;generation of precursor metabolites and energy;6.67647745256268e-06!GO:0005643;nuclear pore;6.82210145772558e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.64262507958423e-06!GO:0016787;hydrolase activity;7.72462083788052e-06!GO:0009117;nucleotide metabolic process;7.98651628935617e-06!GO:0006084;acetyl-CoA metabolic process;8.42880375589249e-06!GO:0006752;group transfer coenzyme metabolic process;1.04179339557432e-05!GO:0006916;anti-apoptosis;1.1235920867602e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.30639386957677e-05!GO:0043067;regulation of programmed cell death;1.3160417868526e-05!GO:0008026;ATP-dependent helicase activity;1.32060714310091e-05!GO:0004386;helicase activity;1.42168756130138e-05!GO:0005770;late endosome;1.48963866331065e-05!GO:0042981;regulation of apoptosis;1.49954596500067e-05!GO:0050794;regulation of cellular process;1.51189425252672e-05!GO:0007049;cell cycle;1.55704162917775e-05!GO:0005791;rough endoplasmic reticulum;1.62573132306775e-05!GO:0006613;cotranslational protein targeting to membrane;1.80569211938438e-05!GO:0005525;GTP binding;1.89038542244919e-05!GO:0019867;outer membrane;1.89950980787795e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.10784713075155e-05!GO:0030133;transport vesicle;2.35331653405137e-05!GO:0045259;proton-transporting ATP synthase complex;2.41116242595697e-05!GO:0016853;isomerase activity;2.61011928434468e-05!GO:0051170;nuclear import;2.73841373661037e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.97969482097654e-05!GO:0009719;response to endogenous stimulus;2.99231218661602e-05!GO:0005905;coated pit;3.02503650466883e-05!GO:0031968;organelle outer membrane;3.03603654781851e-05!GO:0045786;negative regulation of progression through cell cycle;3.36810121972542e-05!GO:0045454;cell redox homeostasis;3.37853448441537e-05!GO:0046474;glycerophospholipid biosynthetic process;3.45207485884164e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.53201970399293e-05!GO:0005667;transcription factor complex;3.54645222399729e-05!GO:0006606;protein import into nucleus;3.66064769101043e-05!GO:0030532;small nuclear ribonucleoprotein complex;5.82249561580116e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.82249561580116e-05!GO:0046930;pore complex;6.02698828792079e-05!GO:0030867;rough endoplasmic reticulum membrane;6.40194836560033e-05!GO:0032561;guanyl ribonucleotide binding;7.11209686839644e-05!GO:0019001;guanyl nucleotide binding;7.11209686839644e-05!GO:0006403;RNA localization;7.60281670339426e-05!GO:0050657;nucleic acid transport;7.85974336623183e-05!GO:0051236;establishment of RNA localization;7.85974336623183e-05!GO:0050658;RNA transport;7.85974336623183e-05!GO:0006281;DNA repair;9.40002512154435e-05!GO:0033116;ER-Golgi intermediate compartment membrane;0.000101777942414713!GO:0008610;lipid biosynthetic process;0.000106034404839712!GO:0000245;spliceosome assembly;0.00010895415598236!GO:0003724;RNA helicase activity;0.000128747305347754!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00013551346268476!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000141103808280094!GO:0030029;actin filament-based process;0.000155911609300141!GO:0004298;threonine endopeptidase activity;0.000156563169846657!GO:0043566;structure-specific DNA binding;0.000164876015528815!GO:0044262;cellular carbohydrate metabolic process;0.000168432337064972!GO:0016859;cis-trans isomerase activity;0.000170058379502892!GO:0005769;early endosome;0.000171194688288225!GO:0016740;transferase activity;0.000173566414536469!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000185343878527273!GO:0006793;phosphorus metabolic process;0.000185343878527273!GO:0006796;phosphate metabolic process;0.000185343878527273!GO:0005048;signal sequence binding;0.000190663521429617!GO:0005741;mitochondrial outer membrane;0.000201082470628644!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000201082470628644!GO:0003713;transcription coactivator activity;0.000212983887944858!GO:0006612;protein targeting to membrane;0.000222921365822744!GO:0031324;negative regulation of cellular metabolic process;0.000226233123013856!GO:0046467;membrane lipid biosynthetic process;0.00024229565636376!GO:0051726;regulation of cell cycle;0.000259418236586654!GO:0006364;rRNA processing;0.000261386924697569!GO:0030663;COPI coated vesicle membrane;0.000268114754853574!GO:0030126;COPI vesicle coat;0.000268114754853574!GO:0003697;single-stranded DNA binding;0.000271522837863933!GO:0004576;oligosaccharyl transferase activity;0.000309148808164287!GO:0046489;phosphoinositide biosynthetic process;0.000327369651592815!GO:0006650;glycerophospholipid metabolic process;0.000327693972367719!GO:0016044;membrane organization and biogenesis;0.000334616710339763!GO:0005762;mitochondrial large ribosomal subunit;0.000353797883252496!GO:0000315;organellar large ribosomal subunit;0.000353797883252496!GO:0051427;hormone receptor binding;0.00035384005862906!GO:0008250;oligosaccharyl transferase complex;0.000362913108692952!GO:0000074;regulation of progression through cell cycle;0.000372066401568334!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000403431067368819!GO:0016072;rRNA metabolic process;0.000410017733320374!GO:0040008;regulation of growth;0.000447180956971085!GO:0050789;regulation of biological process;0.000456242199923292!GO:0030137;COPI-coated vesicle;0.000498765246965801!GO:0016310;phosphorylation;0.000511428895577018!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000527040145073293!GO:0015399;primary active transmembrane transporter activity;0.000527040145073293!GO:0006839;mitochondrial transport;0.000566014835888216!GO:0043021;ribonucleoprotein binding;0.000567782577596134!GO:0005885;Arp2/3 protein complex;0.000569113587420996!GO:0006891;intra-Golgi vesicle-mediated transport;0.000585713310746337!GO:0016563;transcription activator activity;0.000616529775950759!GO:0043623;cellular protein complex assembly;0.000616529775950759!GO:0035257;nuclear hormone receptor binding;0.000631736258959289!GO:0007050;cell cycle arrest;0.000689296522600781!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000692743847165197!GO:0004177;aminopeptidase activity;0.000839102200914744!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000905826646160777!GO:0006643;membrane lipid metabolic process;0.00096988351004128!GO:0008092;cytoskeletal protein binding;0.000980875416643892!GO:0051920;peroxiredoxin activity;0.000996944003358855!GO:0009892;negative regulation of metabolic process;0.0010027279100122!GO:0018196;peptidyl-asparagine modification;0.00109032665157827!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00109032665157827!GO:0022402;cell cycle process;0.00111385030269525!GO:0051028;mRNA transport;0.00120296510396855!GO:0030118;clathrin coat;0.00123151692515317!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00125060359531259!GO:0008186;RNA-dependent ATPase activity;0.00133981516552579!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00146636730510644!GO:0016779;nucleotidyltransferase activity;0.00155119588887437!GO:0000314;organellar small ribosomal subunit;0.00159784265676612!GO:0005763;mitochondrial small ribosomal subunit;0.00159784265676612!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00174018722887749!GO:0006979;response to oxidative stress;0.00176069096992461!GO:0007264;small GTPase mediated signal transduction;0.00180557405537704!GO:0043284;biopolymer biosynthetic process;0.00188165447519219!GO:0016568;chromatin modification;0.00194503997269521!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00196932746728327!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00196932746728327!GO:0007243;protein kinase cascade;0.00209641380647865!GO:0016197;endosome transport;0.00212380749643615!GO:0009165;nucleotide biosynthetic process;0.00227796859750561!GO:0007040;lysosome organization and biogenesis;0.00229469315337247!GO:0030658;transport vesicle membrane;0.00229469315337247!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00234148631963474!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00237639390609062!GO:0048471;perinuclear region of cytoplasm;0.00239262605568774!GO:0030027;lamellipodium;0.00240253782281212!GO:0007006;mitochondrial membrane organization and biogenesis;0.00244411928693178!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00258492203949023!GO:0043681;protein import into mitochondrion;0.00264490862414856!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00278267285650436!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00278746190206663!GO:0030132;clathrin coat of coated pit;0.00286803045905692!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00287243007993212!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00287243007993212!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00287243007993212!GO:0043433;negative regulation of transcription factor activity;0.00300213373285646!GO:0006626;protein targeting to mitochondrion;0.00306733062975319!GO:0006497;protein amino acid lipidation;0.00311166153974126!GO:0030176;integral to endoplasmic reticulum membrane;0.00313272604795875!GO:0006644;phospholipid metabolic process;0.00314355637530874!GO:0003729;mRNA binding;0.00317316189957198!GO:0030384;phosphoinositide metabolic process;0.00324191612297345!GO:0030659;cytoplasmic vesicle membrane;0.00329432829494464!GO:0019899;enzyme binding;0.00329727716082123!GO:0004004;ATP-dependent RNA helicase activity;0.00329727716082123!GO:0016126;sterol biosynthetic process;0.00350032718291477!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0035209617818437!GO:0048500;signal recognition particle;0.00375525700670076!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0037623665265615!GO:0019843;rRNA binding;0.00388400725658543!GO:0048487;beta-tubulin binding;0.00399892254237481!GO:0043492;ATPase activity, coupled to movement of substances;0.00410939684025133!GO:0006892;post-Golgi vesicle-mediated transport;0.00414006681098895!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00424186618253299!GO:0019752;carboxylic acid metabolic process;0.00436696014775324!GO:0005774;vacuolar membrane;0.00442190157160407!GO:0001726;ruffle;0.00443358325203578!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00446701248907122!GO:0006082;organic acid metabolic process;0.004699847955902!GO:0015992;proton transport;0.00476563538600708!GO:0006414;translational elongation;0.00483433913436052!GO:0007033;vacuole organization and biogenesis;0.0048672036285723!GO:0006509;membrane protein ectodomain proteolysis;0.00497661948799283!GO:0033619;membrane protein proteolysis;0.00497661948799283!GO:0051168;nuclear export;0.00506623593956676!GO:0006818;hydrogen transport;0.00508007591503959!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00512193278636966!GO:0045045;secretory pathway;0.00520738223668264!GO:0044255;cellular lipid metabolic process;0.00521269680319451!GO:0006506;GPI anchor biosynthetic process;0.00530171869767129!GO:0003899;DNA-directed RNA polymerase activity;0.00530171869767129!GO:0051252;regulation of RNA metabolic process;0.00560345064226684!GO:0051087;chaperone binding;0.00572148074323391!GO:0045792;negative regulation of cell size;0.00573766334155027!GO:0016481;negative regulation of transcription;0.00573766334155027!GO:0022890;inorganic cation transmembrane transporter activity;0.00585371986076003!GO:0035258;steroid hormone receptor binding;0.00588766362766249!GO:0030521;androgen receptor signaling pathway;0.00607883045865683!GO:0031072;heat shock protein binding;0.00614095948496543!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00621745244273068!GO:0048522;positive regulation of cellular process;0.00642640911068358!GO:0030134;ER to Golgi transport vesicle;0.00650054670220473!GO:0006383;transcription from RNA polymerase III promoter;0.00652082566583933!GO:0030127;COPII vesicle coat;0.00654136209806727!GO:0012507;ER to Golgi transport vesicle membrane;0.00654136209806727!GO:0050811;GABA receptor binding;0.00676939669531707!GO:0006790;sulfur metabolic process;0.00679117986263855!GO:0030660;Golgi-associated vesicle membrane;0.00689156192597854!GO:0046483;heterocycle metabolic process;0.00703937585081078!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00703937585081078!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00712526787583967!GO:0045047;protein targeting to ER;0.00712526787583967!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00731248883944935!GO:0006505;GPI anchor metabolic process;0.00738698826944804!GO:0031901;early endosome membrane;0.00738698826944804!GO:0030308;negative regulation of cell growth;0.00743115090831827!GO:0051540;metal cluster binding;0.00743115090831827!GO:0051536;iron-sulfur cluster binding;0.00743115090831827!GO:0042158;lipoprotein biosynthetic process;0.00757949911118675!GO:0030518;steroid hormone receptor signaling pathway;0.0079192733333269!GO:0000096;sulfur amino acid metabolic process;0.0079441639295738!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00796705483638596!GO:0003746;translation elongation factor activity;0.00803080441078264!GO:0007034;vacuolar transport;0.00809416035015484!GO:0003711;transcription elongation regulator activity;0.00830106424361487!GO:0005583;fibrillar collagen;0.00860218728764497!GO:0044433;cytoplasmic vesicle part;0.00878377076555805!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.00889598789989117!GO:0005869;dynactin complex;0.00894621248606313!GO:0003690;double-stranded DNA binding;0.00894710293674347!GO:0007010;cytoskeleton organization and biogenesis;0.00903112608443883!GO:0031902;late endosome membrane;0.00940839576620226!GO:0006260;DNA replication;0.00992077827712129!GO:0033673;negative regulation of kinase activity;0.00992077827712129!GO:0006469;negative regulation of protein kinase activity;0.00992077827712129!GO:0008139;nuclear localization sequence binding;0.0100411935416568!GO:0043488;regulation of mRNA stability;0.0100993639521001!GO:0043487;regulation of RNA stability;0.0100993639521001!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0105564046214649!GO:0017166;vinculin binding;0.0106830019124471!GO:0000059;protein import into nucleus, docking;0.0106830019124471!GO:0012506;vesicle membrane;0.0106830019124471!GO:0005813;centrosome;0.0106863733292431!GO:0006740;NADPH regeneration;0.0107859772442948!GO:0006098;pentose-phosphate shunt;0.0107859772442948!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0108779735429696!GO:0006984;ER-nuclear signaling pathway;0.0109682475352746!GO:0006402;mRNA catabolic process;0.0113715709189549!GO:0016363;nuclear matrix;0.011671780621578!GO:0044437;vacuolar part;0.0117122784464055!GO:0065009;regulation of a molecular function;0.0117889491490537!GO:0030880;RNA polymerase complex;0.0121767679281565!GO:0051128;regulation of cellular component organization and biogenesis;0.0122159118537259!GO:0006323;DNA packaging;0.0122159118537259!GO:0008312;7S RNA binding;0.012247041458429!GO:0046519;sphingoid metabolic process;0.0122785611896467!GO:0001527;microfibril;0.0123453072681262!GO:0030119;AP-type membrane coat adaptor complex;0.0123695083625672!GO:0051348;negative regulation of transferase activity;0.0124228667092496!GO:0016860;intramolecular oxidoreductase activity;0.0125506915020974!GO:0006354;RNA elongation;0.0134680440116608!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0135221510272551!GO:0015002;heme-copper terminal oxidase activity;0.0135221510272551!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0135221510272551!GO:0004129;cytochrome-c oxidase activity;0.0135221510272551!GO:0031543;peptidyl-proline dioxygenase activity;0.0137231627553762!GO:0005765;lysosomal membrane;0.0137818049140053!GO:0009967;positive regulation of signal transduction;0.0138556567986875!GO:0006352;transcription initiation;0.0140045381178528!GO:0031418;L-ascorbic acid binding;0.0141469842524786!GO:0006739;NADP metabolic process;0.0146455723113064!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0148494821980605!GO:0008180;signalosome;0.0149078002569184!GO:0016408;C-acyltransferase activity;0.0149317558731449!GO:0015630;microtubule cytoskeleton;0.014955335150897!GO:0030503;regulation of cell redox homeostasis;0.0156479404445042!GO:0005581;collagen;0.0158296327334462!GO:0005815;microtubule organizing center;0.0164754068878981!GO:0006695;cholesterol biosynthetic process;0.0164812632332893!GO:0006897;endocytosis;0.0165580211578447!GO:0010324;membrane invagination;0.0165580211578447!GO:0030125;clathrin vesicle coat;0.0165787341376672!GO:0030665;clathrin coated vesicle membrane;0.0165787341376672!GO:0006607;NLS-bearing substrate import into nucleus;0.0166027724775954!GO:0030041;actin filament polymerization;0.0173654204885937!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0174163056816692!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0174163056816692!GO:0033559;unsaturated fatty acid metabolic process;0.0176315097841744!GO:0006636;unsaturated fatty acid biosynthetic process;0.0176315097841744!GO:0000049;tRNA binding;0.0178646318573154!GO:0000339;RNA cap binding;0.0182072759651571!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0183146516835197!GO:0007041;lysosomal transport;0.0185705115320003!GO:0005862;muscle thin filament tropomyosin;0.0186782174340595!GO:0006672;ceramide metabolic process;0.0190959240718256!GO:0030131;clathrin adaptor complex;0.0191199238371854!GO:0065007;biological regulation;0.0198500380381956!GO:0051287;NAD binding;0.0199998146725249!GO:0050681;androgen receptor binding;0.0203104287734923!GO:0005586;collagen type III;0.0213692068796346!GO:0019222;regulation of metabolic process;0.0213692068796346!GO:0007021;tubulin folding;0.021591121067429!GO:0035035;histone acetyltransferase binding;0.0216497397404106!GO:0000287;magnesium ion binding;0.0219596261066569!GO:0001872;zymosan binding;0.0224392981024281!GO:0001878;response to yeast;0.0224392981024281!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0224627993398595!GO:0000428;DNA-directed RNA polymerase complex;0.0224627993398595!GO:0016272;prefoldin complex;0.0231520760875018!GO:0003779;actin binding;0.0233122836374431!GO:0005520;insulin-like growth factor binding;0.0233606670257723!GO:0016251;general RNA polymerase II transcription factor activity;0.0236487645532756!GO:0044420;extracellular matrix part;0.0239023393319141!GO:0000209;protein polyubiquitination;0.0245891841059106!GO:0030865;cortical cytoskeleton organization and biogenesis;0.024677392008484!GO:0065004;protein-DNA complex assembly;0.0246932260483795!GO:0006118;electron transport;0.0247139341821406!GO:0015631;tubulin binding;0.0254889870972992!GO:0008147;structural constituent of bone;0.0257309324186793!GO:0050662;coenzyme binding;0.0259119551790518!GO:0007030;Golgi organization and biogenesis;0.0260286991847422!GO:0031529;ruffle organization and biogenesis;0.0262200889763085!GO:0006693;prostaglandin metabolic process;0.0262533857565945!GO:0006692;prostanoid metabolic process;0.0262533857565945!GO:0019798;procollagen-proline dioxygenase activity;0.027038921478519!GO:0009112;nucleobase metabolic process;0.0273671491287865!GO:0006595;polyamine metabolic process;0.0273671491287865!GO:0006289;nucleotide-excision repair;0.0274558735731669!GO:0051329;interphase of mitotic cell cycle;0.0279904568377981!GO:0032940;secretion by cell;0.0286719433742912!GO:0008320;protein transmembrane transporter activity;0.0287440135338239!GO:0043022;ribosome binding;0.0295739009959406!GO:0006749;glutathione metabolic process;0.0308789196409902!GO:0008047;enzyme activator activity;0.0311725514960893!GO:0005595;collagen type XII;0.0313119040043505!GO:0005832;chaperonin-containing T-complex;0.0316382991080707!GO:0030522;intracellular receptor-mediated signaling pathway;0.0317074457110223!GO:0006778;porphyrin metabolic process;0.0322408456668429!GO:0033013;tetrapyrrole metabolic process;0.0322408456668429!GO:0051325;interphase;0.0326459142742859!GO:0048468;cell development;0.0329962346423013!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0332318329268284!GO:0003923;GPI-anchor transamidase activity;0.033261402097433!GO:0016255;attachment of GPI anchor to protein;0.033261402097433!GO:0042765;GPI-anchor transamidase complex;0.033261402097433!GO:0007160;cell-matrix adhesion;0.0334540737786729!GO:0005801;cis-Golgi network;0.034006578198615!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0342821099653466!GO:0048144;fibroblast proliferation;0.0343247252224973!GO:0048145;regulation of fibroblast proliferation;0.0343247252224973!GO:0031625;ubiquitin protein ligase binding;0.0343857742909696!GO:0008154;actin polymerization and/or depolymerization;0.0344157485095463!GO:0045926;negative regulation of growth;0.0344157485095463!GO:0008652;amino acid biosynthetic process;0.0351879339655505!GO:0004287;prolyl oligopeptidase activity;0.0358250045088291!GO:0030145;manganese ion binding;0.0363733660119959!GO:0031589;cell-substrate adhesion;0.0365843707633947!GO:0006629;lipid metabolic process;0.0370269719268564!GO:0006769;nicotinamide metabolic process;0.0371169653940148!GO:0051101;regulation of DNA binding;0.0371611157654995!GO:0043086;negative regulation of catalytic activity;0.0377716135624855!GO:0051098;regulation of binding;0.0380963755722371!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0384042159539745!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0384042159539745!GO:0022408;negative regulation of cell-cell adhesion;0.0391454552570592!GO:0008033;tRNA processing;0.0393360827232033!GO:0032984;macromolecular complex disassembly;0.0393697937545769!GO:0006767;water-soluble vitamin metabolic process;0.0398816301284114!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0403617103636794!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0404501863030382!GO:0030833;regulation of actin filament polymerization;0.0416177599418327!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0420373504741724!GO:0000030;mannosyltransferase activity;0.0420648302061984!GO:0008287;protein serine/threonine phosphatase complex;0.0420648302061984!GO:0005777;peroxisome;0.042584061329422!GO:0042579;microbody;0.042584061329422!GO:0044452;nucleolar part;0.0432028355011065!GO:0048146;positive regulation of fibroblast proliferation;0.0439801740589944!GO:0008234;cysteine-type peptidase activity;0.0441819795142935!GO:0008601;protein phosphatase type 2A regulator activity;0.0447981858874233!GO:0030508;thiol-disulfide exchange intermediate activity;0.0452722065390545!GO:0030032;lamellipodium biogenesis;0.045864926860797!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0460481777133887!GO:0003756;protein disulfide isomerase activity;0.0466525797811945!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0466525797811945!GO:0006302;double-strand break repair;0.0484698785750104!GO:0042168;heme metabolic process;0.0485735102924689!GO:0004197;cysteine-type endopeptidase activity;0.0492605722217429!GO:0044438;microbody part;0.0495718217089392!GO:0044439;peroxisomal part;0.0495718217089392 | |||
|sample_id=11468 | |sample_id=11468 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 106: | ||
|sample_tissue=omentum | |sample_tissue=omentum | ||
|top_motifs=TAL1_TCF{3,4,12}:2.37535353476;HIF1A:2.22782089852;HMGA1,2:2.1544250167;GZF1:2.05895595024;ESR1:1.93665325315;MYBL2:1.8923182423;NKX3-1:1.88351741287;TEF:1.81935242524;IKZF1:1.7959183239;RXRA_VDR{dimer}:1.75294725866;HOX{A5,B5}:1.72683946664;HES1:1.71792719606;GLI1..3:1.6783957263;FOXL1:1.65776601795;TEAD1:1.65285563854;MAFB:1.61140198655;XBP1:1.55990425847;NFIX:1.51432436033;UFEwm:1.47545087888;NFE2L1:1.45788852056;NKX2-2,8:1.41236785758;HOX{A4,D4}:1.40707148031;HBP1_HMGB_SSRP1_UBTF:1.39538347951;EBF1:1.38473850142;ATF6:1.32778524434;ZNF238:1.32327873248;SMAD1..7,9:1.2814499772;ZNF423:1.21837101284;EVI1:1.19195367569;SPZ1:1.17030678207;NR3C1:1.14377041617;NKX2-1,4:1.13920681536;AIRE:1.1145731877;TP53:1.06923641413;KLF4:1.05711352243;GCM1,2:1.02618371192;TFAP4:1.01584127823;PAX1,9:0.998451362979;NFATC1..3:0.977454987614;RXR{A,B,G}:0.963093053231;EN1,2:0.95836469823;TLX1..3_NFIC{dimer}:0.955573135353;HLF:0.909493591821;SRF:0.885980536019;DBP:0.879365046344;FOXO1,3,4:0.873549621849;ADNP_IRX_SIX_ZHX:0.863464555166;MTE{core}:0.862888249812;NHLH1,2:0.862041501247;GTF2I:0.851771654146;HMX1:0.801272249323;ALX4:0.792436265223;TFAP2B:0.76899676467;MAZ:0.768414323789;bHLH_family:0.739519080071;NANOG{mouse}:0.731243637116;GTF2A1,2:0.705681676156;ZNF148:0.694872504698;HOX{A6,A7,B6,B7}:0.682433989454;SREBF1,2:0.681634122643;CDC5L:0.646291550568;HIC1:0.622020363895;NR6A1:0.618892258715;LHX3,4:0.612535778847;HSF1,2:0.6110090737;PAX5:0.596375702656;TBX4,5:0.582948009155;HAND1,2:0.578705767549;TFAP2{A,C}:0.553251433812;GATA4:0.528533183121;MYFfamily:0.511384192495;NFE2L2:0.505923834702;PATZ1:0.470594701559;SOX17:0.470367380897;FOXA2:0.458325883441;ZNF384:0.421225212834;TFCP2:0.418244710848;MZF1:0.415869472443;T:0.344773795863;POU6F1:0.344386923899;STAT1,3:0.341307014891;NKX3-2:0.325396139184;ARID5B:0.324927668611;MTF1:0.313066190885;STAT2,4,6:0.311717658735;ESRRA:0.285292428346;MEF2{A,B,C,D}:0.269273580108;CEBPA,B_DDIT3:0.26627022975;FOX{D1,D2}:0.250474465988;PRDM1:0.244028913319;EP300:0.209759054215;PAX4:0.181263860247;AHR_ARNT_ARNT2:0.166007471519;XCPE1{core}:0.160544267991;STAT5{A,B}:0.156164967358;GFI1B:0.104103547155;TBP:0.0890242999507;ELK1,4_GABP{A,B1}:0.0399337661452;ZIC1..3:0.00235698496911;PAX6:-0.00336821911351;IRF1,2:-0.00792271643188;HNF1A:-0.013465836671;TGIF1:-0.0171606306756;REST:-0.0238030660977;ZNF143:-0.0250329990931;FOX{I1,J2}:-0.0533420818048;ZBTB6:-0.0626887989114;BACH2:-0.0696171905422;SOX5:-0.0959221055676;NFIL3:-0.129083900964;FOXM1:-0.132801152472;EGR1..3:-0.152597548836;NRF1:-0.160779479561;RREB1:-0.175897069146;AR:-0.185346305176;MED-1{core}:-0.207920646438;TLX2:-0.208676707015;PAX2:-0.223641094252;MYB:-0.226579244523;ZFP161:-0.242041803707;FOXP3:-0.258515570228;HNF4A_NR2F1,2:-0.259941035043;RFX1:-0.265147561444;ZBTB16:-0.273826036863;TOPORS:-0.286572099171;YY1:-0.287676521682;JUN:-0.299512086864;HOXA9_MEIS1:-0.309656366469;FOSL2:-0.329020999;FOXN1:-0.331652803437;FOS_FOS{B,L1}_JUN{B,D}:-0.338589333724;VSX1,2:-0.349872207077;ATF2:-0.352690007033;POU3F1..4:-0.355223577113;SP1:-0.373735390563;CRX:-0.374672737281;SOX2:-0.391891053393;NKX6-1,2:-0.391966547851;FOXD3:-0.399571152274;ATF5_CREB3:-0.409022093825;PAX3,7:-0.415415263771;ETS1,2:-0.426202254798;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.429136206625;CREB1:-0.435515354943;NFE2:-0.436730798055;RUNX1..3:-0.439415593905;ATF4:-0.476614439217;DMAP1_NCOR{1,2}_SMARC:-0.512608577097;SPI1:-0.532494021793;LEF1_TCF7_TCF7L1,2:-0.54435085334;PPARG:-0.55003879704;PRRX1,2:-0.578831408042;LMO2:-0.585654974329;ELF1,2,4:-0.593506504176;TFDP1:-0.597933526311;IRF7:-0.60870098128;BPTF:-0.6335351223;GATA6:-0.67665528772;FOXQ1:-0.676835096684;NFKB1_REL_RELA:-0.682881995784;IKZF2:-0.688191496516;CUX2:-0.694944286535;SPIB:-0.699440361928;ONECUT1,2:-0.704806358509;POU5F1:-0.710553794836;ZEB1:-0.737750535641;SNAI1..3:-0.7580819445;PAX8:-0.782916299359;CDX1,2,4:-0.821428601941;NR1H4:-0.823928580915;POU1F1:-0.839370493444;GFI1:-0.842652876878;FOXP1:-0.865007674655;BREu{core}:-0.886547894826;FOX{F1,F2,J1}:-0.902471509591;RORA:-0.904645211913;OCT4_SOX2{dimer}:-0.906742130807;RBPJ:-1.00385752131;NKX2-3_NKX2-5:-1.06798517797;RFX2..5_RFXANK_RFXAP:-1.07213150495;MYOD1:-1.07282990604;NR5A1,2:-1.08270538873;E2F1..5:-1.12108213233;SOX{8,9,10}:-1.17569188729;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18570025342;NANOG:-1.19041547029;PITX1..3:-1.19627298493;NFY{A,B,C}:-1.28402260705;PDX1:-1.48223155471;PBX1:-1.50952453097;ALX1:-1.81351213982;POU2F1..3:-2.38422253686 | |top_motifs=TAL1_TCF{3,4,12}:2.37535353476;HIF1A:2.22782089852;HMGA1,2:2.1544250167;GZF1:2.05895595024;ESR1:1.93665325315;MYBL2:1.8923182423;NKX3-1:1.88351741287;TEF:1.81935242524;IKZF1:1.7959183239;RXRA_VDR{dimer}:1.75294725866;HOX{A5,B5}:1.72683946664;HES1:1.71792719606;GLI1..3:1.6783957263;FOXL1:1.65776601795;TEAD1:1.65285563854;MAFB:1.61140198655;XBP1:1.55990425847;NFIX:1.51432436033;UFEwm:1.47545087888;NFE2L1:1.45788852056;NKX2-2,8:1.41236785758;HOX{A4,D4}:1.40707148031;HBP1_HMGB_SSRP1_UBTF:1.39538347951;EBF1:1.38473850142;ATF6:1.32778524434;ZNF238:1.32327873248;SMAD1..7,9:1.2814499772;ZNF423:1.21837101284;EVI1:1.19195367569;SPZ1:1.17030678207;NR3C1:1.14377041617;NKX2-1,4:1.13920681536;AIRE:1.1145731877;TP53:1.06923641413;KLF4:1.05711352243;GCM1,2:1.02618371192;TFAP4:1.01584127823;PAX1,9:0.998451362979;NFATC1..3:0.977454987614;RXR{A,B,G}:0.963093053231;EN1,2:0.95836469823;TLX1..3_NFIC{dimer}:0.955573135353;HLF:0.909493591821;SRF:0.885980536019;DBP:0.879365046344;FOXO1,3,4:0.873549621849;ADNP_IRX_SIX_ZHX:0.863464555166;MTE{core}:0.862888249812;NHLH1,2:0.862041501247;GTF2I:0.851771654146;HMX1:0.801272249323;ALX4:0.792436265223;TFAP2B:0.76899676467;MAZ:0.768414323789;bHLH_family:0.739519080071;NANOG{mouse}:0.731243637116;GTF2A1,2:0.705681676156;ZNF148:0.694872504698;HOX{A6,A7,B6,B7}:0.682433989454;SREBF1,2:0.681634122643;CDC5L:0.646291550568;HIC1:0.622020363895;NR6A1:0.618892258715;LHX3,4:0.612535778847;HSF1,2:0.6110090737;PAX5:0.596375702656;TBX4,5:0.582948009155;HAND1,2:0.578705767549;TFAP2{A,C}:0.553251433812;GATA4:0.528533183121;MYFfamily:0.511384192495;NFE2L2:0.505923834702;PATZ1:0.470594701559;SOX17:0.470367380897;FOXA2:0.458325883441;ZNF384:0.421225212834;TFCP2:0.418244710848;MZF1:0.415869472443;T:0.344773795863;POU6F1:0.344386923899;STAT1,3:0.341307014891;NKX3-2:0.325396139184;ARID5B:0.324927668611;MTF1:0.313066190885;STAT2,4,6:0.311717658735;ESRRA:0.285292428346;MEF2{A,B,C,D}:0.269273580108;CEBPA,B_DDIT3:0.26627022975;FOX{D1,D2}:0.250474465988;PRDM1:0.244028913319;EP300:0.209759054215;PAX4:0.181263860247;AHR_ARNT_ARNT2:0.166007471519;XCPE1{core}:0.160544267991;STAT5{A,B}:0.156164967358;GFI1B:0.104103547155;TBP:0.0890242999507;ELK1,4_GABP{A,B1}:0.0399337661452;ZIC1..3:0.00235698496911;PAX6:-0.00336821911351;IRF1,2:-0.00792271643188;HNF1A:-0.013465836671;TGIF1:-0.0171606306756;REST:-0.0238030660977;ZNF143:-0.0250329990931;FOX{I1,J2}:-0.0533420818048;ZBTB6:-0.0626887989114;BACH2:-0.0696171905422;SOX5:-0.0959221055676;NFIL3:-0.129083900964;FOXM1:-0.132801152472;EGR1..3:-0.152597548836;NRF1:-0.160779479561;RREB1:-0.175897069146;AR:-0.185346305176;MED-1{core}:-0.207920646438;TLX2:-0.208676707015;PAX2:-0.223641094252;MYB:-0.226579244523;ZFP161:-0.242041803707;FOXP3:-0.258515570228;HNF4A_NR2F1,2:-0.259941035043;RFX1:-0.265147561444;ZBTB16:-0.273826036863;TOPORS:-0.286572099171;YY1:-0.287676521682;JUN:-0.299512086864;HOXA9_MEIS1:-0.309656366469;FOSL2:-0.329020999;FOXN1:-0.331652803437;FOS_FOS{B,L1}_JUN{B,D}:-0.338589333724;VSX1,2:-0.349872207077;ATF2:-0.352690007033;POU3F1..4:-0.355223577113;SP1:-0.373735390563;CRX:-0.374672737281;SOX2:-0.391891053393;NKX6-1,2:-0.391966547851;FOXD3:-0.399571152274;ATF5_CREB3:-0.409022093825;PAX3,7:-0.415415263771;ETS1,2:-0.426202254798;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.429136206625;CREB1:-0.435515354943;NFE2:-0.436730798055;RUNX1..3:-0.439415593905;ATF4:-0.476614439217;DMAP1_NCOR{1,2}_SMARC:-0.512608577097;SPI1:-0.532494021793;LEF1_TCF7_TCF7L1,2:-0.54435085334;PPARG:-0.55003879704;PRRX1,2:-0.578831408042;LMO2:-0.585654974329;ELF1,2,4:-0.593506504176;TFDP1:-0.597933526311;IRF7:-0.60870098128;BPTF:-0.6335351223;GATA6:-0.67665528772;FOXQ1:-0.676835096684;NFKB1_REL_RELA:-0.682881995784;IKZF2:-0.688191496516;CUX2:-0.694944286535;SPIB:-0.699440361928;ONECUT1,2:-0.704806358509;POU5F1:-0.710553794836;ZEB1:-0.737750535641;SNAI1..3:-0.7580819445;PAX8:-0.782916299359;CDX1,2,4:-0.821428601941;NR1H4:-0.823928580915;POU1F1:-0.839370493444;GFI1:-0.842652876878;FOXP1:-0.865007674655;BREu{core}:-0.886547894826;FOX{F1,F2,J1}:-0.902471509591;RORA:-0.904645211913;OCT4_SOX2{dimer}:-0.906742130807;RBPJ:-1.00385752131;NKX2-3_NKX2-5:-1.06798517797;RFX2..5_RFXANK_RFXAP:-1.07213150495;MYOD1:-1.07282990604;NR5A1,2:-1.08270538873;E2F1..5:-1.12108213233;SOX{8,9,10}:-1.17569188729;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.18570025342;NANOG:-1.19041547029;PITX1..3:-1.19627298493;NFY{A,B,C}:-1.28402260705;PDX1:-1.48223155471;PBX1:-1.50952453097;ALX1:-1.81351213982;POU2F1..3:-2.38422253686 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11468-119C1;search_select_hide=table117:FF:11468-119C1 | |||
}} | }} | ||
Latest revision as of 18:03, 4 June 2020
| Name: | Preadipocyte - omental, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11065 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11065
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11065
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.459 |
| 10 | 10 | 0.723 |
| 100 | 100 | 0.606 |
| 101 | 101 | 0.411 |
| 102 | 102 | 0.0331 |
| 103 | 103 | 0.655 |
| 104 | 104 | 0.943 |
| 105 | 105 | 0.134 |
| 106 | 106 | 0.579 |
| 107 | 107 | 0.486 |
| 108 | 108 | 0.391 |
| 109 | 109 | 0.632 |
| 11 | 11 | 0.353 |
| 110 | 110 | 0.649 |
| 111 | 111 | 0.752 |
| 112 | 112 | 0.879 |
| 113 | 113 | 0.0124 |
| 114 | 114 | 0.152 |
| 115 | 115 | 0.122 |
| 116 | 116 | 0.222 |
| 117 | 117 | 0.395 |
| 118 | 118 | 0.146 |
| 119 | 119 | 0.212 |
| 12 | 12 | 0.428 |
| 120 | 120 | 0.689 |
| 121 | 121 | 0.704 |
| 122 | 122 | 0.299 |
| 123 | 123 | 0.00137 |
| 124 | 124 | 0.341 |
| 125 | 125 | 0.123 |
| 126 | 126 | 0.299 |
| 127 | 127 | 0.124 |
| 128 | 128 | 0.807 |
| 129 | 129 | 0.975 |
| 13 | 13 | 0.247 |
| 130 | 130 | 0.702 |
| 131 | 131 | 0.114 |
| 132 | 132 | 0.862 |
| 133 | 133 | 0.265 |
| 134 | 134 | 0.53 |
| 135 | 135 | 0.686 |
| 136 | 136 | 0.727 |
| 137 | 137 | 0.897 |
| 138 | 138 | 0.258 |
| 139 | 139 | 0.411 |
| 14 | 14 | 0.209 |
| 140 | 140 | 0.39 |
| 141 | 141 | 0.784 |
| 142 | 142 | 0.454 |
| 143 | 143 | 0.844 |
| 144 | 144 | 0.715 |
| 145 | 145 | 0.115 |
| 146 | 146 | 0.317 |
| 147 | 147 | 0.135 |
| 148 | 148 | 0.666 |
| 149 | 149 | 8.6522e-5 |
| 15 | 15 | 0.899 |
| 150 | 150 | 0.606 |
| 151 | 151 | 0.874 |
| 152 | 152 | 0.0206 |
| 153 | 153 | 0.0679 |
| 154 | 154 | 0.683 |
| 155 | 155 | 0.00568 |
| 156 | 156 | 0.306 |
| 157 | 157 | 0.839 |
| 158 | 158 | 0.0073 |
| 159 | 159 | 0.379 |
| 16 | 16 | 0.013 |
| 160 | 160 | 0.467 |
| 161 | 161 | 0.261 |
| 162 | 162 | 0.983 |
| 163 | 163 | 0.0442 |
| 164 | 164 | 0.61 |
| 165 | 165 | 0.919 |
| 166 | 166 | 0.0657 |
| 167 | 167 | 0.379 |
| 168 | 168 | 0.432 |
| 169 | 169 | 0.0908 |
| 17 | 17 | 0.866 |
| 18 | 18 | 0.158 |
| 19 | 19 | 0.0258 |
| 2 | 2 | 0.342 |
| 20 | 20 | 0.351 |
| 21 | 21 | 0.32 |
| 22 | 22 | 0.225 |
| 23 | 23 | 0.268 |
| 24 | 24 | 0.0535 |
| 25 | 25 | 0.284 |
| 26 | 26 | 0.397 |
| 27 | 27 | 0.668 |
| 28 | 28 | 0.217 |
| 29 | 29 | 0.487 |
| 3 | 3 | 0.854 |
| 30 | 30 | 0.378 |
| 31 | 31 | 0.762 |
| 32 | 32 | 8.40543e-16 |
| 33 | 33 | 0.927 |
| 34 | 34 | 0.939 |
| 35 | 35 | 0.726 |
| 36 | 36 | 0.0276 |
| 37 | 37 | 0.461 |
| 38 | 38 | 0.17 |
| 39 | 39 | 0.22 |
| 4 | 4 | 0.559 |
| 40 | 40 | 0.191 |
| 41 | 41 | 0.694 |
| 42 | 42 | 0.205 |
| 43 | 43 | 0.963 |
| 44 | 44 | 0.692 |
| 45 | 45 | 0.948 |
| 46 | 46 | 0.721 |
| 47 | 47 | 0.405 |
| 48 | 48 | 0.492 |
| 49 | 49 | 0.483 |
| 5 | 5 | 0.394 |
| 50 | 50 | 0.846 |
| 51 | 51 | 0.459 |
| 52 | 52 | 0.712 |
| 53 | 53 | 0.0765 |
| 54 | 54 | 0.89 |
| 55 | 55 | 0.224 |
| 56 | 56 | 0.402 |
| 57 | 57 | 0.674 |
| 58 | 58 | 0.279 |
| 59 | 59 | 0.373 |
| 6 | 6 | 0.444 |
| 60 | 60 | 0.983 |
| 61 | 61 | 0.346 |
| 62 | 62 | 0.504 |
| 63 | 63 | 0.989 |
| 64 | 64 | 0.213 |
| 65 | 65 | 0.827 |
| 66 | 66 | 0.239 |
| 67 | 67 | 0.546 |
| 68 | 68 | 0.899 |
| 69 | 69 | 0.423 |
| 7 | 7 | 0.201 |
| 70 | 70 | 0.464 |
| 71 | 71 | 0.978 |
| 72 | 72 | 0.948 |
| 73 | 73 | 0.0262 |
| 74 | 74 | 0.283 |
| 75 | 75 | 0.746 |
| 76 | 76 | 0.438 |
| 77 | 77 | 0.134 |
| 78 | 78 | 0.1 |
| 79 | 79 | 0.0235 |
| 8 | 8 | 0.815 |
| 80 | 80 | 0.511 |
| 81 | 81 | 0.675 |
| 82 | 82 | 0.395 |
| 83 | 83 | 0.996 |
| 84 | 84 | 0.275 |
| 85 | 85 | 0.0912 |
| 86 | 86 | 0.37 |
| 87 | 87 | 0.194 |
| 88 | 88 | 0.605 |
| 89 | 89 | 0.342 |
| 9 | 9 | 0.547 |
| 90 | 90 | 0.871 |
| 91 | 91 | 0.494 |
| 92 | 92 | 0.135 |
| 93 | 93 | 0.76 |
| 94 | 94 | 0.929 |
| 95 | 95 | 0.835 |
| 96 | 96 | 0.823 |
| 97 | 97 | 0.264 |
| 98 | 98 | 0.179 |
| 99 | 99 | 0.152 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11065
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002334 (preadipocyte)
0002579 (omentum preadipocyte)
UBERON: Anatomy
0000468 (multi-cellular organism)
0003688 (omentum)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000466 (immaterial anatomical entity)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0004923 (organ component layer)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0000042 (serous membrane)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002417 (abdominal segment of trunk)
0002358 (peritoneum)
0000916 (abdomen)
0003684 (abdominal cavity)
0001178 (visceral peritoneum)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000137 (human preadipocyte sample)
0000140 (human omentum preadipocyte sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
