FF:11400-118D5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005667 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005667 | ||
|accession_numbers=CAGE;DRX008233;DRR009105;DRZ000530;DRZ001915;DRZ011880;DRZ013265 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037105;DRR041471;DRZ007113 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0010260,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0002066,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543,CL:0002618 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000052,FF:0000247 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.30!260.92!SOX18;;chr8:10588010..10588030,-!p1@SOX7!2.07!116.22!SOX7;;chr21:39870339..39870443,-!p1@ERG!2.04!108.11!ERG;;chr18:53068911..53068935,-!p4@TCF4!1.76!63.51!TCF4;;chr3:169381420..169381535,-!p1@MECOM!1.74!62.16!MECOM;;chr12:96588368..96588394,+!p3@ELK3!1.71!129.84!ELK3;;chr17:6926362..6926377,+!p1@BCL6B!1.59!37.50!BCL6B;;chr8:55370487..55370503,+!p1@SOX17!1.48!29.50!SOX17;;chr12:66218255..66218304,+!p3@HMGA2!1.45!71.40!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!1.45!27.25!HOXA9;;chr10:94449703..94449718,+!p1@HHEX!1.38!87.39!HHEX;;chr12:66218183..66218209,+!p4@HMGA2!1.36!41.89!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.36!31.64!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.32!579.95!HMGA1;;chr7:27205136..27205164,-!p1@HOXA9!1.32!19.93!HOXA9;;chr18:22932080..22932170,-!p1@ZNF521!1.28!75.90!ZNF521;;chr13:72441315..72441454,-!p1@DACH1!1.25!33.67!DACH1;;chr8:106330656..106330684,+!p1@ZFPM2!1.22!40.65!ZFPM2;;chr7:27192185..27192209,-!p1@HOXA3!1.22!15.77!HOXA3;;chr9:14314131..14314147,-!p2@NFIB!1.19!79.95!NFIB;;chr3:128206762..128206781,-!p2@GATA2!1.17!84.23!GATA2;;chr17:46682321..46682362,-!p1@HOXB6!1.17!13.74!HOXB6;;chr7:15726243..15726293,-!p2@MEOX2!1.17!13.63!MEOX2;;chr17:46655672..46655697,-!p3@HOXB4!1.15!13.29!HOXB4;;chr20:50159198..50159299,-!p1@NFATC2!1.13!18.47!NFATC2;;chr19:46801639..46801699,+!p1@HIF3A!1.13!12.39!HIF3A;;chr6:28321971..28321995,-!p1@ZNF323!1.10!11.49!ZNF323;;chr18:53068982..53068993,-!p20@TCF4!1.05!10.14!TCF4;;chr5:71803177..71803255,-!p1@ZNF366!1.03!9.68!ZNF366;;chr19:13213511..13213545,-!p2@LYL1!1.02!10.36!LYL1;;chr9:16705069..16705086,-!p3@BNC2!1.02!9.46!BNC2;;chr6:34204672..34204692,+!p1@HMGA1!1.00!1041.32!HMGA1;;chr12:66218598..66218645,+!p2@HMGA2!1.00!42.23!HMGA2;;chr20:50721803..50721857,-!p2@ZFP64!1.00!14.19!ZFP64;;chr2:176994408..176994492,+!p1@HOXD8!0.98!8.56!HOXD8;;chr16:86600426..86600441,+!p1@FOXC2!0.97!20.83!FOXC2;;chr17:46687959..46688007,-!p2@HOXB7!0.97!11.71!HOXB7;;chr12:66218152..66218174,+!p10@HMGA2!0.97!9.01!HMGA2;;chr19:13213399..13213414,-!p6@LYL1!0.97!8.33!LYL1;;chr5:88178983..88179012,-!p1@MEF2C!0.96!64.98!MEF2C;;chr7:15726296..15726315,-!p1@MEOX2!0.95!7.88!MEOX2;;chr7:115670804..115670825,-!p1@TFEC!0.91!7.09!TFEC;;chr11:128563948..128564003,+!p1@FLI1!0.90!86.94!FLI1;;chr10:94449675..94449694,+!p2@HHEX!0.90!19.59!HHEX;;chr2:46524537..46524553,+!p1@EPAS1!0.89!693.12!EPAS1;;chr15:96873984..96873999,+!p3@NR2F2!0.89!52.14!NR2F2;;chr10:31288370..31288393,-!p3@ZNF438!0.89!6.76!ZNF438;;chr19:53496768..53496799,-!p1@ZNF702P!0.87!10.25!ZNF702P;;chr10:31288398..31288455,-!p2@ZNF438!0.87!7.66!ZNF438;;chr3:168864315..168864339,-!p2@MECOM!0.86!10.47!MECOM;;chr12:66218836..66218888,+!p1@HMGA2!0.85!60.81!HMGA2;;chr12:66218378..66218401,+!p6@HMGA2!0.85!9.80!HMGA2;;chr9:14314566..14314618,-!p1@NFIB!0.83!74.89!NFIB;;chr12:2986206..2986258,-!p2@FOXM1!0.83!37.50!FOXM1;;chr9:14314106..14314119,-!p5@NFIB!0.83!10.81!NFIB;;chrY:21906594..21906622,-!p1@KDM5D!0.83!5.74!KDM5D;;chr18:53177984..53178004,-!p17@TCF4!0.82!5.63!TCF4;;chr13:72441506..72441562,-!p3@DACH1!0.82!5.63!DACH1;;chr5:88179195..88179224,-!p3@MEF2C!0.81!9.01!MEF2C;;chr17:46688334..46688385,-!p1@HOXB7!0.81!8.11!HOXB7;;chr17:46690839..46690884,-!p1@HOXB8!0.81!5.41!HOXB8;;chr20:42295745..42295765,+!p1@MYBL2!0.80!94.59!MYBL2;;chr12:2986275..2986363,-!p1@FOXM1!0.80!58.45!FOXM1;;chr17:46655704..46655718,-!p2@HOXB4!0.80!8.22!HOXB4;;chr2:177053386..177053402,+!p1@HOXD1!0.80!5.29!HOXD1;;chrX:66763815..66763854,+!p2@AR!0.79!6.98!AR;;chr3:25469815..25469866,+!p3@RARB!0.79!5.18!RARB;;chr18:52989565..52989623,-!p9@TCF4!0.78!6.64!TCF4;;chr1:47695003..47695042,-!p2@TAL1!0.78!5.07!TAL1;;chr15:96873921..96873946,+!p1@NR2F2!0.77!153.04!NR2F2;;chr1:209979467..209979494,-!p1@IRF6!0.77!5.63!IRF6;;chrY:2803415..2803468,+!p1@ZFY!0.77!4.84!ZFY;;chr7:27224842..27224872,-!p1@HOXA11!0.77!4.84!HOXA11;;chr20:42295713..42295738,+!p2@MYBL2!0.75!30.41!MYBL2;;chr3:168865194..168865245,-!p3@MECOM!0.75!6.19!MECOM;;chr13:72441074..72441172,-!p2@DACH1!0.75!4.62!DACH1;;chr6:130339710..130339745,+!p1@L3MBTL3!0.74!39.86!L3MBTL3;;chr18:19749541..19749557,+!p1@GATA6!0.74!15.54!GATA6;;chrX:66763856..66763896,+!p1@AR!0.74!6.76!AR;;chr5:176738887..176738934,-!p1@MXD3!0.72!31.64!MXD3;;chr8:93115584..93115642,-!p5@RUNX1T1!0.72!4.28!RUNX1T1;;chr18:53255415..53255491,-!p1@TCF4!0.71!39.19!TCF4;;chr4:299227..299272,-!p1@ZNF732!0.71!4.17!ZNF732;;chr8:106330696..106330719,+!p2@ZFPM2!0.70!5.29!ZFPM2;;chr18:53257001..53257015,-!p5@TCF4!0.69!7.21!TCF4;;chr11:113930291..113930339,+!p2@ZBTB16!0.69!6.76!ZBTB16;;chr17:41622925..41622976,-!p3@ETV4!0.69!6.08!ETV4;;chr20:42543441..42543497,+!p1@TOX2!0.68!19.37!TOX2;;chr20:42543506..42543549,+!p2@TOX2!0.68!9.91!TOX2;;chr10:45496320..45496336,+!p3@ZNF22!0.68!3.83!ZNF22;;chr1:205601064..205601087,-!p4@ELK4!0.67!7.77!ELK4;;chr11:113930425..113930471,+!p1@ZBTB16!0.67!5.63!ZBTB16;;chr1:221052840..221052875,+!p4@HLX!0.67!4.50!HLX;;chr12:80084018..80084035,-!p17@PAWR!0.6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| |||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002543;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002618;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0010260 | |||
|ffid_belonging_in_development=CL:0002546,CL:0000222 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 34: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor3.CNhs12010.11400-118D5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor3.CNhs12010.11400-118D5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor3.CNhs12010.11400-118D5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor3.CNhs12010.11400-118D5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Umbilical%2520vein%252c%2520donor3.CNhs12010.11400-118D5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11400-118D5 | |id=FF:11400-118D5 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000247 | ||
|is_obsolete= | |||
|library_id=CNhs12010 | |||
|library_id_phase_based=2:CNhs12010 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11400 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.GTGGCC.11400 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11400 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.GTGGCC.11400 | |||
|name=Endothelial Cells - Umbilical vein, donor3 | |name=Endothelial Cells - Umbilical vein, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 41: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12010,LSID837,release011,COMPLETED | |profile_hcage=CNhs12010,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=118 | |rna_box=118 | ||
|rna_catalog_number=SC8005 | |rna_catalog_number=SC8005 | ||
Line 55: | Line 82: | ||
|rna_tube_id=118D5 | |rna_tube_id=118D5 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10007.GTGGCC | |||
|sample_age=fetal | |sample_age=fetal | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 68: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.29905823528845e-274!GO:0043226;organelle;2.29385632409981e-219!GO:0043229;intracellular organelle;7.770956597366e-219!GO:0043231;intracellular membrane-bound organelle;2.83976851625131e-209!GO:0043227;membrane-bound organelle;3.66429904717545e-209!GO:0005737;cytoplasm;2.72313065352755e-195!GO:0044422;organelle part;4.62084104453354e-158!GO:0044446;intracellular organelle part;2.20270254086234e-156!GO:0044444;cytoplasmic part;8.14590117223634e-131!GO:0032991;macromolecular complex;3.64779532491215e-106!GO:0044238;primary metabolic process;3.88701514908959e-100!GO:0044237;cellular metabolic process;4.27965351557539e-99!GO:0005634;nucleus;1.07920303283587e-95!GO:0043170;macromolecule metabolic process;5.3377090473372e-95!GO:0030529;ribonucleoprotein complex;2.55840809156122e-86!GO:0005515;protein binding;3.19355930948131e-84!GO:0044428;nuclear part;4.72157485618276e-81!GO:0043233;organelle lumen;7.82598810520394e-76!GO:0031974;membrane-enclosed lumen;7.82598810520394e-76!GO:0003723;RNA binding;3.09973692389725e-75!GO:0005739;mitochondrion;6.77833101538247e-65!GO:0016043;cellular component organization and biogenesis;1.39649769617789e-58!GO:0019538;protein metabolic process;3.43619714296826e-58!GO:0043283;biopolymer metabolic process;1.01093132983174e-56!GO:0043234;protein complex;2.8278217848618e-55!GO:0005840;ribosome;3.50181943898211e-51!GO:0044267;cellular protein metabolic process;3.50181943898211e-51!GO:0044260;cellular macromolecule metabolic process;9.08892865858295e-51!GO:0031090;organelle membrane;5.92634700049668e-49!GO:0006396;RNA processing;1.77428761154413e-48!GO:0043228;non-membrane-bound organelle;2.83630129078643e-48!GO:0043232;intracellular non-membrane-bound organelle;2.83630129078643e-48!GO:0006412;translation;3.39670902047351e-48!GO:0031981;nuclear lumen;4.13089332938601e-48!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.65415060473579e-47!GO:0006996;organelle organization and biogenesis;3.71136402490264e-45!GO:0003735;structural constituent of ribosome;1.49912611136406e-44!GO:0010467;gene expression;5.15385823532474e-44!GO:0033036;macromolecule localization;2.48959542023136e-43!GO:0031967;organelle envelope;2.88346223482097e-43!GO:0015031;protein transport;5.02941935072009e-43!GO:0044429;mitochondrial part;6.47481603178137e-43!GO:0031975;envelope;7.33898695703129e-43!GO:0005829;cytosol;1.26191400412791e-41!GO:0008104;protein localization;2.2910760799095e-39!GO:0016071;mRNA metabolic process;2.36796431255204e-39!GO:0045184;establishment of protein localization;3.73696977920671e-39!GO:0065003;macromolecular complex assembly;4.50814892589097e-39!GO:0033279;ribosomal subunit;7.49156272289289e-39!GO:0046907;intracellular transport;7.81287163411369e-39!GO:0006259;DNA metabolic process;9.96150087923756e-38!GO:0008380;RNA splicing;1.99195738792802e-37!GO:0009058;biosynthetic process;1.92569847091309e-36!GO:0000166;nucleotide binding;5.27393058959978e-36!GO:0022607;cellular component assembly;1.6772273510571e-35!GO:0044249;cellular biosynthetic process;2.59364581987911e-35!GO:0009059;macromolecule biosynthetic process;8.01151660081383e-35!GO:0006397;mRNA processing;7.55112939998941e-34!GO:0007049;cell cycle;7.94021546888279e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.04539727132634e-31!GO:0005654;nucleoplasm;9.03036310316799e-31!GO:0006886;intracellular protein transport;2.81219271143108e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.05550579975665e-28!GO:0005740;mitochondrial envelope;6.85264897873007e-28!GO:0051649;establishment of cellular localization;8.35703866202197e-27!GO:0005681;spliceosome;1.12769223208656e-26!GO:0003676;nucleic acid binding;1.34660132712654e-26!GO:0032553;ribonucleotide binding;1.73630449475751e-26!GO:0032555;purine ribonucleotide binding;1.73630449475751e-26!GO:0051641;cellular localization;2.57609524696181e-26!GO:0031966;mitochondrial membrane;5.16115107561453e-26!GO:0017076;purine nucleotide binding;5.24913912206211e-26!GO:0019866;organelle inner membrane;1.83281657528666e-25!GO:0044451;nucleoplasm part;7.47971781743755e-25!GO:0022402;cell cycle process;5.36458997246886e-24!GO:0044445;cytosolic part;1.30022149426662e-23!GO:0000278;mitotic cell cycle;1.37488908113351e-23!GO:0016462;pyrophosphatase activity;1.81874368408796e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.48697622760733e-23!GO:0017111;nucleoside-triphosphatase activity;3.64666928524132e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;4.2537214974792e-23!GO:0005743;mitochondrial inner membrane;4.37318005743448e-23!GO:0005694;chromosome;9.80822553674432e-22!GO:0032559;adenyl ribonucleotide binding;1.27603060084015e-21!GO:0005524;ATP binding;1.39694282768046e-21!GO:0012505;endomembrane system;1.5394482550931e-21!GO:0030554;adenyl nucleotide binding;5.90065424944969e-21!GO:0006974;response to DNA damage stimulus;1.37303465241326e-20!GO:0006119;oxidative phosphorylation;2.4930208791535e-20!GO:0015935;small ribosomal subunit;3.68658463738105e-20!GO:0044427;chromosomal part;7.19667481535298e-20!GO:0051276;chromosome organization and biogenesis;8.31868084193326e-20!GO:0015934;large ribosomal subunit;8.60146481186855e-20!GO:0016070;RNA metabolic process;9.36991775455493e-20!GO:0022618;protein-RNA complex assembly;1.06540605410037e-19!GO:0043412;biopolymer modification;2.03083498706269e-19!GO:0016874;ligase activity;2.81077783742422e-19!GO:0051301;cell division;2.83426616053315e-19!GO:0006457;protein folding;3.03309982086549e-19!GO:0005730;nucleolus;7.13738999122012e-19!GO:0006512;ubiquitin cycle;7.31918987293215e-19!GO:0000087;M phase of mitotic cell cycle;1.82258942419868e-18!GO:0031980;mitochondrial lumen;2.5758997066036e-18!GO:0005759;mitochondrial matrix;2.5758997066036e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;2.79889069704593e-18!GO:0044455;mitochondrial membrane part;2.90232101033045e-18!GO:0044265;cellular macromolecule catabolic process;3.31761625738975e-18!GO:0022403;cell cycle phase;3.54888176058651e-18!GO:0007067;mitosis;4.14279491086207e-18!GO:0019941;modification-dependent protein catabolic process;4.22639947025918e-18!GO:0043632;modification-dependent macromolecule catabolic process;4.22639947025918e-18!GO:0006511;ubiquitin-dependent protein catabolic process;6.06847038387617e-18!GO:0044257;cellular protein catabolic process;9.777778900317e-18!GO:0006464;protein modification process;1.74276983254515e-17!GO:0008134;transcription factor binding;3.80723467365162e-17!GO:0043285;biopolymer catabolic process;4.65320613518756e-17!GO:0006281;DNA repair;1.09277399502798e-16!GO:0006605;protein targeting;3.43736846425028e-16!GO:0005635;nuclear envelope;4.16194157923058e-16!GO:0005794;Golgi apparatus;4.73229356659047e-16!GO:0005746;mitochondrial respiratory chain;5.15615648949071e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;5.25434524571705e-16!GO:0000502;proteasome complex (sensu Eukaryota);9.58794246893766e-16!GO:0009057;macromolecule catabolic process;1.01478074920135e-15!GO:0000279;M phase;1.10649375178018e-15!GO:0043687;post-translational protein modification;1.34018158863697e-15!GO:0008135;translation factor activity, nucleic acid binding;1.36323114494993e-15!GO:0005783;endoplasmic reticulum;2.07439348611105e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.13753973552461e-15!GO:0016192;vesicle-mediated transport;2.62963493238919e-15!GO:0006323;DNA packaging;3.18021253211538e-15!GO:0030163;protein catabolic process;3.35925654939461e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.72202714802494e-15!GO:0048770;pigment granule;4.64848228086181e-15!GO:0042470;melanosome;4.64848228086181e-15!GO:0009719;response to endogenous stimulus;6.60487096626035e-15!GO:0031965;nuclear membrane;7.33986999354084e-15!GO:0000398;nuclear mRNA splicing, via spliceosome;1.0812167863118e-14!GO:0000375;RNA splicing, via transesterification reactions;1.0812167863118e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.0812167863118e-14!GO:0050136;NADH dehydrogenase (quinone) activity;1.60178337086617e-14!GO:0003954;NADH dehydrogenase activity;1.60178337086617e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.60178337086617e-14!GO:0044248;cellular catabolic process;1.99738312807108e-14!GO:0006260;DNA replication;2.0235565418626e-14!GO:0044453;nuclear membrane part;2.37045920909497e-14!GO:0048193;Golgi vesicle transport;3.21552610408357e-14!GO:0005761;mitochondrial ribosome;3.93374566852469e-14!GO:0000313;organellar ribosome;3.93374566852469e-14!GO:0016604;nuclear body;4.26123355075019e-14!GO:0051186;cofactor metabolic process;8.21998349308548e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.60967300296475e-14!GO:0051082;unfolded protein binding;1.28248568026358e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.95657033397978e-13!GO:0044432;endoplasmic reticulum part;4.83022269162518e-13!GO:0016887;ATPase activity;8.92698385006112e-13!GO:0042623;ATPase activity, coupled;1.25993941774964e-12!GO:0015630;microtubule cytoskeleton;1.26961417746807e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.48965991318478e-12!GO:0042773;ATP synthesis coupled electron transport;1.48965991318478e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.55205215929629e-12!GO:0045271;respiratory chain complex I;1.55205215929629e-12!GO:0005747;mitochondrial respiratory chain complex I;1.55205215929629e-12!GO:0003743;translation initiation factor activity;1.70242145398062e-12!GO:0050794;regulation of cellular process;1.74773559005299e-12!GO:0006461;protein complex assembly;3.27331645415213e-12!GO:0000785;chromatin;3.40829062926059e-12!GO:0006413;translational initiation;3.48023983493604e-12!GO:0004386;helicase activity;3.82764453597605e-12!GO:0042254;ribosome biogenesis and assembly;4.17721030005436e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.19804284798831e-12!GO:0006913;nucleocytoplasmic transport;4.33196620671234e-12!GO:0006333;chromatin assembly or disassembly;8.24435020931543e-12!GO:0051726;regulation of cell cycle;1.19041648453547e-11!GO:0051169;nuclear transport;1.29069005336519e-11!GO:0005643;nuclear pore;1.7314823988847e-11!GO:0000074;regulation of progression through cell cycle;2.12596170755786e-11!GO:0003712;transcription cofactor activity;2.18540929546238e-11!GO:0008639;small protein conjugating enzyme activity;2.23696445861366e-11!GO:0012501;programmed cell death;3.24497051228281e-11!GO:0004842;ubiquitin-protein ligase activity;4.59550163631238e-11!GO:0006915;apoptosis;4.68345726511184e-11!GO:0016607;nuclear speck;1.09084509727849e-10!GO:0006446;regulation of translational initiation;1.39959118763669e-10!GO:0019787;small conjugating protein ligase activity;1.47382849951381e-10!GO:0065004;protein-DNA complex assembly;1.58771146417747e-10!GO:0006732;coenzyme metabolic process;1.60104724546676e-10!GO:0006793;phosphorus metabolic process;1.92443672647715e-10!GO:0006796;phosphate metabolic process;1.92443672647715e-10!GO:0008026;ATP-dependent helicase activity;3.58708193732993e-10!GO:0009055;electron carrier activity;3.73466633963453e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.21474354271515e-10!GO:0006403;RNA localization;6.01242315594732e-10!GO:0005793;ER-Golgi intermediate compartment;6.2762961959602e-10!GO:0008219;cell death;6.83998273875705e-10!GO:0016265;death;6.83998273875705e-10!GO:0050657;nucleic acid transport;6.83998273875705e-10!GO:0051236;establishment of RNA localization;6.83998273875705e-10!GO:0050658;RNA transport;6.83998273875705e-10!GO:0046930;pore complex;1.01498553306393e-09!GO:0016881;acid-amino acid ligase activity;1.21500784321892e-09!GO:0008565;protein transporter activity;1.27573756245193e-09!GO:0016310;phosphorylation;1.75177532642243e-09!GO:0006163;purine nucleotide metabolic process;1.78718368144056e-09!GO:0009259;ribonucleotide metabolic process;1.79443938227863e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.88674989565168e-09!GO:0005813;centrosome;3.47059019529831e-09!GO:0065002;intracellular protein transport across a membrane;3.97196745158942e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.07816603880209e-09!GO:0048523;negative regulation of cellular process;5.33984320461417e-09!GO:0005789;endoplasmic reticulum membrane;5.79979954912764e-09!GO:0006399;tRNA metabolic process;6.20441143573499e-09!GO:0017038;protein import;6.20441143573499e-09!GO:0030532;small nuclear ribonucleoprotein complex;6.29480518531934e-09!GO:0009150;purine ribonucleotide metabolic process;7.47882361203041e-09!GO:0007010;cytoskeleton organization and biogenesis;8.33498139900347e-09!GO:0006334;nucleosome assembly;9.81374231589186e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.27213039946427e-08!GO:0016568;chromatin modification;1.31806192057286e-08!GO:0006164;purine nucleotide biosynthetic process;1.51050743422768e-08!GO:0005815;microtubule organizing center;1.54603714464744e-08!GO:0009056;catabolic process;1.65578905937383e-08!GO:0005819;spindle;2.1860447722427e-08!GO:0031497;chromatin assembly;2.306573336278e-08!GO:0016740;transferase activity;2.55768169664557e-08!GO:0006366;transcription from RNA polymerase II promoter;2.58297539840579e-08!GO:0003697;single-stranded DNA binding;2.59520116386911e-08!GO:0009260;ribonucleotide biosynthetic process;3.11363260076338e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.19620339510331e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.19620339510331e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.19620339510331e-08!GO:0000775;chromosome, pericentric region;3.45871304354882e-08!GO:0051028;mRNA transport;3.72804485244013e-08!GO:0003924;GTPase activity;3.72804485244013e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.86527347244293e-08!GO:0006364;rRNA processing;4.33515323177631e-08!GO:0050789;regulation of biological process;4.3731595477449e-08!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.55213576442753e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.55815226728266e-08!GO:0009060;aerobic respiration;6.11037482852048e-08!GO:0009152;purine ribonucleotide biosynthetic process;6.16233824276601e-08!GO:0043038;amino acid activation;6.73610828085165e-08!GO:0006418;tRNA aminoacylation for protein translation;6.73610828085165e-08!GO:0043039;tRNA aminoacylation;6.73610828085165e-08!GO:0009199;ribonucleoside triphosphate metabolic process;7.22108999971942e-08!GO:0005525;GTP binding;8.86247489092546e-08!GO:0009141;nucleoside triphosphate metabolic process;9.27624748817121e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.26018373655016e-07!GO:0009144;purine nucleoside triphosphate metabolic process;1.26018373655016e-07!GO:0016072;rRNA metabolic process;1.36466504311448e-07!GO:0032446;protein modification by small protein conjugation;1.58331301688311e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.93077582740766e-07!GO:0015986;ATP synthesis coupled proton transport;2.57534817203326e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.57534817203326e-07!GO:0000245;spliceosome assembly;2.67120411335789e-07!GO:0019899;enzyme binding;2.88291487626105e-07!GO:0030036;actin cytoskeleton organization and biogenesis;2.89583512820417e-07!GO:0051188;cofactor biosynthetic process;3.00385167181746e-07!GO:0043566;structure-specific DNA binding;3.10001003434695e-07!GO:0009142;nucleoside triphosphate biosynthetic process;3.1060138994821e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.1060138994821e-07!GO:0031988;membrane-bound vesicle;3.2030809164909e-07!GO:0048519;negative regulation of biological process;3.2030809164909e-07!GO:0016567;protein ubiquitination;3.2030809164909e-07!GO:0009117;nucleotide metabolic process;3.38932757443078e-07!GO:0051246;regulation of protein metabolic process;3.68005522707736e-07!GO:0016023;cytoplasmic membrane-bound vesicle;3.89097939632553e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.35851029040764e-07!GO:0045333;cellular respiration;4.71590105227378e-07!GO:0044431;Golgi apparatus part;4.96997981906097e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.36636168591421e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.36636168591421e-07!GO:0019829;cation-transporting ATPase activity;5.637745733709e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.91991461320345e-07!GO:0051170;nuclear import;5.95610342309406e-07!GO:0005768;endosome;5.96647839789016e-07!GO:0000151;ubiquitin ligase complex;7.67852773191034e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;7.74728207796103e-07!GO:0046034;ATP metabolic process;8.87821490379557e-07!GO:0031982;vesicle;8.96872689499965e-07!GO:0031252;leading edge;9.56796701902969e-07!GO:0030120;vesicle coat;1.08144186466781e-06!GO:0030662;coated vesicle membrane;1.08144186466781e-06!GO:0048475;coated membrane;1.25757636525141e-06!GO:0030117;membrane coat;1.25757636525141e-06!GO:0032561;guanyl ribonucleotide binding;1.25757636525141e-06!GO:0019001;guanyl nucleotide binding;1.25757636525141e-06!GO:0007051;spindle organization and biogenesis;1.28333945898363e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.28333945898363e-06!GO:0005667;transcription factor complex;1.33486365966389e-06!GO:0042981;regulation of apoptosis;1.38478069205348e-06!GO:0006099;tricarboxylic acid cycle;1.41886686139943e-06!GO:0046356;acetyl-CoA catabolic process;1.41886686139943e-06!GO:0030029;actin filament-based process;1.45096555656077e-06!GO:0031410;cytoplasmic vesicle;1.5801029063516e-06!GO:0043067;regulation of programmed cell death;1.58084061464024e-06!GO:0006261;DNA-dependent DNA replication;1.84971077650824e-06!GO:0006606;protein import into nucleus;1.87610810872194e-06!GO:0016779;nucleotidyltransferase activity;2.02122781787503e-06!GO:0003724;RNA helicase activity;2.16799305367158e-06!GO:0006916;anti-apoptosis;2.17656406621539e-06!GO:0005788;endoplasmic reticulum lumen;2.59238147397364e-06!GO:0045259;proton-transporting ATP synthase complex;2.67050054767213e-06!GO:0051329;interphase of mitotic cell cycle;3.13366478114213e-06!GO:0007005;mitochondrion organization and biogenesis;3.21827263059213e-06!GO:0016787;hydrolase activity;3.26404674141047e-06!GO:0006084;acetyl-CoA metabolic process;3.33804846954856e-06!GO:0006754;ATP biosynthetic process;3.33804846954856e-06!GO:0006753;nucleoside phosphate metabolic process;3.33804846954856e-06!GO:0043069;negative regulation of programmed cell death;3.41008671069216e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.47002817705849e-06!GO:0045786;negative regulation of progression through cell cycle;4.15864959725294e-06!GO:0043623;cellular protein complex assembly;4.20664557880773e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.27752407192651e-06!GO:0043066;negative regulation of apoptosis;4.76134835569851e-06!GO:0005769;early endosome;5.15539292758235e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;5.50193956089784e-06!GO:0003714;transcription corepressor activity;6.53177235372726e-06!GO:0051187;cofactor catabolic process;6.68653311871594e-06!GO:0008047;enzyme activator activity;8.47872155781737e-06!GO:0051325;interphase;8.97794739604799e-06!GO:0008094;DNA-dependent ATPase activity;9.26470889459515e-06!GO:0019222;regulation of metabolic process;9.60829735902152e-06!GO:0000139;Golgi membrane;9.89329669353437e-06!GO:0009108;coenzyme biosynthetic process;1.01738659319323e-05!GO:0016469;proton-transporting two-sector ATPase complex;1.07231992580739e-05!GO:0016564;transcription repressor activity;1.08760707127719e-05!GO:0007264;small GTPase mediated signal transduction;1.34923214966589e-05!GO:0005762;mitochondrial large ribosomal subunit;1.39272766232166e-05!GO:0000315;organellar large ribosomal subunit;1.39272766232166e-05!GO:0044440;endosomal part;1.53526773346534e-05!GO:0010008;endosome membrane;1.53526773346534e-05!GO:0009109;coenzyme catabolic process;1.60022814371776e-05!GO:0000075;cell cycle checkpoint;1.84850831663944e-05!GO:0008092;cytoskeletal protein binding;1.84850831663944e-05!GO:0006613;cotranslational protein targeting to membrane;1.87319664412491e-05!GO:0003713;transcription coactivator activity;1.9317026002888e-05!GO:0048471;perinuclear region of cytoplasm;2.01617817407331e-05!GO:0006752;group transfer coenzyme metabolic process;2.33684440525151e-05!GO:0004298;threonine endopeptidase activity;2.85562563809938e-05!GO:0005874;microtubule;2.98295449824923e-05!GO:0005096;GTPase activator activity;3.40429900529525e-05!GO:0007243;protein kinase cascade;3.55579689157161e-05!GO:0051427;hormone receptor binding;3.97099895521996e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;4.13716266805013e-05!GO:0016563;transcription activator activity;4.60772585242984e-05!GO:0019843;rRNA binding;4.85543995450965e-05!GO:0045454;cell redox homeostasis;5.52918675766007e-05!GO:0005798;Golgi-associated vesicle;5.72562524539243e-05!GO:0031968;organelle outer membrane;5.78615385536011e-05!GO:0016859;cis-trans isomerase activity;6.49089253921559e-05!GO:0016044;membrane organization and biogenesis;7.00605673932059e-05!GO:0007059;chromosome segregation;7.37649799585321e-05!GO:0005770;late endosome;7.48138391096176e-05!GO:0000776;kinetochore;7.66904048624049e-05!GO:0030867;rough endoplasmic reticulum membrane;8.26958383581662e-05!GO:0019867;outer membrane;8.55852809093615e-05!GO:0016853;isomerase activity;8.55852809093615e-05!GO:0035257;nuclear hormone receptor binding;8.58055794129912e-05!GO:0065007;biological regulation;9.37465801269532e-05!GO:0008186;RNA-dependent ATPase activity;9.62941752247331e-05!GO:0004674;protein serine/threonine kinase activity;9.68333354147779e-05!GO:0043021;ribonucleoprotein binding;0.000105746202252684!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000105795007488291!GO:0007017;microtubule-based process;0.000142797706172045!GO:0000786;nucleosome;0.000143891794925352!GO:0051168;nuclear export;0.00015409621995141!GO:0005657;replication fork;0.000157311104243222!GO:0042802;identical protein binding;0.000185274684949311!GO:0006612;protein targeting to membrane;0.000186063235972668!GO:0003682;chromatin binding;0.000190850189937197!GO:0003899;DNA-directed RNA polymerase activity;0.000196835759611361!GO:0030695;GTPase regulator activity;0.00020249479418877!GO:0031324;negative regulation of cellular metabolic process;0.00020249479418877!GO:0008654;phospholipid biosynthetic process;0.000206899398098194!GO:0005741;mitochondrial outer membrane;0.000213672838390409!GO:0000314;organellar small ribosomal subunit;0.000216040688812818!GO:0005763;mitochondrial small ribosomal subunit;0.000216040688812818!GO:0031072;heat shock protein binding;0.000217030184107806!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000239062346253792!GO:0016126;sterol biosynthetic process;0.000241756717777719!GO:0000059;protein import into nucleus, docking;0.000245419263293511!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000286441728012722!GO:0016491;oxidoreductase activity;0.000288088224036094!GO:0004004;ATP-dependent RNA helicase activity;0.000297431855789835!GO:0007265;Ras protein signal transduction;0.00030282247433601!GO:0005048;signal sequence binding;0.00031639885643845!GO:0051087;chaperone binding;0.000325620516323429!GO:0005885;Arp2/3 protein complex;0.000335686295677234!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000336168469813886!GO:0005905;coated pit;0.000363678385065649!GO:0006302;double-strand break repair;0.000373724401844556!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.000413970137643001!GO:0051252;regulation of RNA metabolic process;0.000418179507707978!GO:0006402;mRNA catabolic process;0.000434255797463623!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000437327125251245!GO:0009165;nucleotide biosynthetic process;0.000467746227463788!GO:0015631;tubulin binding;0.000469588275173787!GO:0005083;small GTPase regulator activity;0.000482315980552903!GO:0009892;negative regulation of metabolic process;0.000514186685249115!GO:0003684;damaged DNA binding;0.000560563415203928!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000618750903022109!GO:0003729;mRNA binding;0.000653078196880492!GO:0006383;transcription from RNA polymerase III promoter;0.000661035497262218!GO:0016301;kinase activity;0.00066469209836138!GO:0005773;vacuole;0.000688282013619999!GO:0016363;nuclear matrix;0.000710807013154287!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000763965954724462!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000786286110514293!GO:0006310;DNA recombination;0.000786692330603323!GO:0006950;response to stress;0.000788343484724887!GO:0033116;ER-Golgi intermediate compartment membrane;0.000890795798710538!GO:0030027;lamellipodium;0.000913299782066713!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000939537468607797!GO:0003678;DNA helicase activity;0.000973609791665717!GO:0006695;cholesterol biosynthetic process;0.00100050195607224!GO:0006401;RNA catabolic process;0.0010012222599395!GO:0007093;mitotic cell cycle checkpoint;0.00103812566681988!GO:0006414;translational elongation;0.00104415431365326!GO:0000910;cytokinesis;0.00106865308297716!GO:0030041;actin filament polymerization;0.00107685490534911!GO:0007052;mitotic spindle organization and biogenesis;0.00108327509668879!GO:0051920;peroxiredoxin activity;0.00109108626557756!GO:0003690;double-stranded DNA binding;0.00115718406516927!GO:0031323;regulation of cellular metabolic process;0.00125997660294623!GO:0030133;transport vesicle;0.00127336259216188!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00131626741311865!GO:0043681;protein import into mitochondrion;0.00132106016898079!GO:0015980;energy derivation by oxidation of organic compounds;0.00133662528192335!GO:0044452;nucleolar part;0.00137988766623485!GO:0005684;U2-dependent spliceosome;0.00145201559302246!GO:0048522;positive regulation of cellular process;0.00153150575546393!GO:0008361;regulation of cell size;0.00156741281160912!GO:0007088;regulation of mitosis;0.00167800961268012!GO:0030658;transport vesicle membrane;0.00171967460912228!GO:0008139;nuclear localization sequence binding;0.00173971467626958!GO:0032508;DNA duplex unwinding;0.00173971467626958!GO:0032392;DNA geometric change;0.00173971467626958!GO:0005637;nuclear inner membrane;0.00174763977489222!GO:0007242;intracellular signaling cascade;0.00182944760650816!GO:0030880;RNA polymerase complex;0.00184254723936048!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00190707894657911!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00190707894657911!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00190707894657911!GO:0045045;secretory pathway;0.00190707894657911!GO:0016049;cell growth;0.00195840174733237!GO:0005856;cytoskeleton;0.0019882431710132!GO:0006268;DNA unwinding during replication;0.00208279491476158!GO:0035258;steroid hormone receptor binding;0.00209030055596136!GO:0000082;G1/S transition of mitotic cell cycle;0.00213226709213295!GO:0006284;base-excision repair;0.00214998028656683!GO:0008250;oligosaccharyl transferase complex;0.00220756694635527!GO:0006350;transcription;0.00220756694635527!GO:0006626;protein targeting to mitochondrion;0.00235374561743897!GO:0000323;lytic vacuole;0.00237600503520059!GO:0005764;lysosome;0.00237600503520059!GO:0051789;response to protein stimulus;0.00247319060185965!GO:0006986;response to unfolded protein;0.00247319060185965!GO:0048500;signal recognition particle;0.00255996080809779!GO:0005876;spindle microtubule;0.00257285149411116!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00257285149411116!GO:0016481;negative regulation of transcription;0.00272185397061926!GO:0043488;regulation of mRNA stability;0.00293287374178033!GO:0043487;regulation of RNA stability;0.00293287374178033!GO:0001558;regulation of cell growth;0.00293287374178033!GO:0004576;oligosaccharyl transferase activity;0.00294167676184465!GO:0006091;generation of precursor metabolites and energy;0.00294210297620828!GO:0006892;post-Golgi vesicle-mediated transport;0.00296435062296982!GO:0016197;endosome transport;0.00299094928826354!GO:0006338;chromatin remodeling;0.00305324859968319!GO:0051052;regulation of DNA metabolic process;0.00317898750370108!GO:0006839;mitochondrial transport;0.00322673378474201!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00326471235873276!GO:0001726;ruffle;0.00328733782135515!GO:0065009;regulation of a molecular function;0.00356415264581217!GO:0017166;vinculin binding;0.00358179433494501!GO:0030118;clathrin coat;0.00360711139276495!GO:0030660;Golgi-associated vesicle membrane;0.00395027414637316!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00402228756807766!GO:0000428;DNA-directed RNA polymerase complex;0.00402228756807766!GO:0006352;transcription initiation;0.00403681631338795!GO:0030134;ER to Golgi transport vesicle;0.0040444805345745!GO:0000922;spindle pole;0.00409768470189965!GO:0006891;intra-Golgi vesicle-mediated transport;0.00417420973029732!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00420209049095487!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00420209049095487!GO:0007006;mitochondrial membrane organization and biogenesis;0.00422842379024755!GO:0006897;endocytosis;0.00426605443428777!GO:0010324;membrane invagination;0.00426605443428777!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00430676252044043!GO:0006611;protein export from nucleus;0.00440648326705746!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00448115636286524!GO:0042770;DNA damage response, signal transduction;0.0045601664467846!GO:0051101;regulation of DNA binding;0.00456448719215359!GO:0030127;COPII vesicle coat;0.00502619119204879!GO:0012507;ER to Golgi transport vesicle membrane;0.00502619119204879!GO:0008154;actin polymerization and/or depolymerization;0.00510270265782847!GO:0030521;androgen receptor signaling pathway;0.00538731907705636!GO:0018196;peptidyl-asparagine modification;0.00549761161224412!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00549761161224412!GO:0008312;7S RNA binding;0.00553033596200009!GO:0016584;nucleosome positioning;0.00571441902708171!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00580780105753768!GO:0048487;beta-tubulin binding;0.00587821102776563!GO:0016741;transferase activity, transferring one-carbon groups;0.00590265308104962!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0059394496131217!GO:0008168;methyltransferase activity;0.00595819307537206!GO:0006289;nucleotide-excision repair;0.006041036839474!GO:0031901;early endosome membrane;0.006041036839474!GO:0003779;actin binding;0.00607508569537641!GO:0009116;nucleoside metabolic process;0.00607581394618929!GO:0005099;Ras GTPase activator activity;0.00609093447689762!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00617662913787227!GO:0015399;primary active transmembrane transporter activity;0.00617662913787227!GO:0008632;apoptotic program;0.00619791188355832!GO:0005791;rough endoplasmic reticulum;0.00641673481274612!GO:0030663;COPI coated vesicle membrane;0.00681587922526048!GO:0030126;COPI vesicle coat;0.00681587922526048!GO:0030132;clathrin coat of coated pit;0.00683255011751042!GO:0031625;ubiquitin protein ligase binding;0.00686697699086295!GO:0032984;macromolecular complex disassembly;0.00708279967472654!GO:0030659;cytoplasmic vesicle membrane;0.0070967778728561!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00712102224432295!GO:0045047;protein targeting to ER;0.00712102224432295!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00732029279449248!GO:0007050;cell cycle arrest;0.0074285983188785!GO:0008022;protein C-terminus binding;0.00752560116308079!GO:0042393;histone binding;0.00757093289020966!GO:0030833;regulation of actin filament polymerization;0.00771626739336353!GO:0007266;Rho protein signal transduction;0.00775488602896037!GO:0051128;regulation of cellular component organization and biogenesis;0.00801890333356703!GO:0008234;cysteine-type peptidase activity;0.00810147268373934!GO:0000049;tRNA binding;0.00812811623814869!GO:0006595;polyamine metabolic process;0.00823811534988549!GO:0003711;transcription elongation regulator activity;0.00834488830070628!GO:0008033;tRNA processing;0.00839089653185932!GO:0006818;hydrogen transport;0.00894267463816813!GO:0015992;proton transport;0.00896001049884871!GO:0051287;NAD binding;0.00906633789998388!GO:0016251;general RNA polymerase II transcription factor activity;0.00941475349189898!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00956926428592967!GO:0043624;cellular protein complex disassembly;0.010177184687235!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0102609134439986!GO:0006405;RNA export from nucleus;0.0102609134439986!GO:0045941;positive regulation of transcription;0.010436660344636!GO:0022406;membrane docking;0.0104835149376817!GO:0048278;vesicle docking;0.0104835149376817!GO:0008180;signalosome;0.0107645247286714!GO:0046483;heterocycle metabolic process;0.0109288761177847!GO:0006740;NADPH regeneration;0.0109723755258343!GO:0006098;pentose-phosphate shunt;0.0109723755258343!GO:0022415;viral reproductive process;0.0110281343721648!GO:0050662;coenzyme binding;0.0110281343721648!GO:0043241;protein complex disassembly;0.0113653833329759!GO:0008629;induction of apoptosis by intracellular signals;0.0115296380560147!GO:0005862;muscle thin filament tropomyosin;0.011683357319204!GO:0005938;cell cortex;0.0117445342896792!GO:0044433;cytoplasmic vesicle part;0.0117758798985936!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0118470689911388!GO:0010468;regulation of gene expression;0.0118768638030889!GO:0016272;prefoldin complex;0.0120266137216033!GO:0005665;DNA-directed RNA polymerase II, core complex;0.012111046084816!GO:0003746;translation elongation factor activity;0.0122727388607525!GO:0004177;aminopeptidase activity;0.0122894480813862!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0124113611999413!GO:0000287;magnesium ion binding;0.0124826863465035!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0126649556590513!GO:0051540;metal cluster binding;0.0127840784518515!GO:0051536;iron-sulfur cluster binding;0.0127840784518515!GO:0005832;chaperonin-containing T-complex;0.0128727044819328!GO:0004003;ATP-dependent DNA helicase activity;0.0129313820953889!GO:0012506;vesicle membrane;0.0130356734129463!GO:0030518;steroid hormone receptor signaling pathway;0.0132663243969342!GO:0000792;heterochromatin;0.0134149449743986!GO:0004527;exonuclease activity;0.0134801577552937!GO:0007346;regulation of progression through mitotic cell cycle;0.0139274771898049!GO:0005669;transcription factor TFIID complex;0.01407727173786!GO:0009112;nucleobase metabolic process;0.0142302415231198!GO:0043022;ribosome binding;0.0142767130223312!GO:0043284;biopolymer biosynthetic process;0.0143376567747785!GO:0051098;regulation of binding;0.0145409878485872!GO:0019904;protein domain specific binding;0.0146374226539691!GO:0009967;positive regulation of signal transduction;0.01518096869759!GO:0000725;recombinational repair;0.0151896848726593!GO:0000724;double-strand break repair via homologous recombination;0.0151896848726593!GO:0031570;DNA integrity checkpoint;0.0153032936132105!GO:0045893;positive regulation of transcription, DNA-dependent;0.0153195944705182!GO:0030137;COPI-coated vesicle;0.0153465194219646!GO:0005869;dynactin complex;0.0153550989164277!GO:0005875;microtubule associated complex;0.0153864918494561!GO:0015036;disulfide oxidoreductase activity;0.0155096719007204!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0162040110596275!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0165442616296312!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0165442616296312!GO:0015002;heme-copper terminal oxidase activity;0.0165442616296312!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0165442616296312!GO:0004129;cytochrome-c oxidase activity;0.0165442616296312!GO:0006468;protein amino acid phosphorylation;0.0167479462087986!GO:0047485;protein N-terminus binding;0.0174094224130355!GO:0046474;glycerophospholipid biosynthetic process;0.0175365530551471!GO:0006509;membrane protein ectodomain proteolysis;0.0175675410531563!GO:0033619;membrane protein proteolysis;0.0175675410531563!GO:0043414;biopolymer methylation;0.0177311973198789!GO:0030145;manganese ion binding;0.0178606940549655!GO:0006778;porphyrin metabolic process;0.0179742690285036!GO:0033013;tetrapyrrole metabolic process;0.0179742690285036!GO:0000819;sister chromatid segregation;0.0180591920557222!GO:0000209;protein polyubiquitination;0.0180890952292825!GO:0043492;ATPase activity, coupled to movement of substances;0.0182431697149641!GO:0006376;mRNA splice site selection;0.0185729075591904!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0185729075591904!GO:0030119;AP-type membrane coat adaptor complex;0.0190137082981742!GO:0051539;4 iron, 4 sulfur cluster binding;0.0191118675862049!GO:0000070;mitotic sister chromatid segregation;0.0191118675862049!GO:0032259;methylation;0.0191189864822653!GO:0006607;NLS-bearing substrate import into nucleus;0.0191705965201586!GO:0004518;nuclease activity;0.019365150488798!GO:0030496;midbody;0.0195272791909646!GO:0005100;Rho GTPase activator activity;0.0195342976190453!GO:0006904;vesicle docking during exocytosis;0.0199019047459155!GO:0019783;small conjugating protein-specific protease activity;0.0204370463178259!GO:0003756;protein disulfide isomerase activity;0.0204370463178259!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0204370463178259!GO:0031902;late endosome membrane;0.0205111472447085!GO:0048660;regulation of smooth muscle cell proliferation;0.0208157680420827!GO:0050681;androgen receptor binding;0.0212326532946022!GO:0008287;protein serine/threonine phosphatase complex;0.0215689245520341!GO:0008276;protein methyltransferase activity;0.0216005897048731!GO:0032940;secretion by cell;0.0216917782940837!GO:0000339;RNA cap binding;0.0219051250214595!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0219177543012303!GO:0006144;purine base metabolic process;0.0231997502218546!GO:0000152;nuclear ubiquitin ligase complex;0.0233516684851893!GO:0000118;histone deacetylase complex;0.0243993896900888!GO:0006275;regulation of DNA replication;0.0243993896900888!GO:0004843;ubiquitin-specific protease activity;0.0243993896900888!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.024500544857035!GO:0008017;microtubule binding;0.0245711750985416!GO:0005774;vacuolar membrane;0.0246286966372843!GO:0000228;nuclear chromosome;0.0246460891251844!GO:0000096;sulfur amino acid metabolic process;0.0256756487166042!GO:0031124;mRNA 3'-end processing;0.0258482427901284!GO:0016408;C-acyltransferase activity;0.0260825858298691!GO:0008610;lipid biosynthetic process;0.0264260626586406!GO:0008536;Ran GTPase binding;0.0265139355395141!GO:0035035;histone acetyltransferase binding;0.0267534810637549!GO:0030032;lamellipodium biogenesis;0.0271238012754643!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0272728496542748!GO:0006270;DNA replication initiation;0.0274640742812722!GO:0043189;H4/H2A histone acetyltransferase complex;0.0274640742812722!GO:0007021;tubulin folding;0.0276412502014747!GO:0046467;membrane lipid biosynthetic process;0.0277752851075695!GO:0030131;clathrin adaptor complex;0.028544009095338!GO:0022411;cellular component disassembly;0.0297798562718167!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0302909892714489!GO:0022890;inorganic cation transmembrane transporter activity;0.0311673408899641!GO:0032200;telomere organization and biogenesis;0.0317461980266054!GO:0000723;telomere maintenance;0.0317461980266054!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0322094437826234!GO:0005092;GDP-dissociation inhibitor activity;0.0323628357156318!GO:0009303;rRNA transcription;0.0323628357156318!GO:0006650;glycerophospholipid metabolic process;0.032531676858792!GO:0040008;regulation of growth;0.0329584832100223!GO:0006739;NADP metabolic process;0.0332557046606744!GO:0005784;translocon complex;0.0335979382820667!GO:0007034;vacuolar transport;0.0338671149583762!GO:0030125;clathrin vesicle coat;0.033879341346417!GO:0030665;clathrin coated vesicle membrane;0.033879341346417!GO:0016311;dephosphorylation;0.0341216678988407!GO:0046822;regulation of nucleocytoplasmic transport;0.0344270389003014!GO:0030100;regulation of endocytosis;0.034712044055367!GO:0016605;PML body;0.0347702651924549!GO:0003725;double-stranded RNA binding;0.0348574470008754!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0351071977196523!GO:0008538;proteasome activator activity;0.0351071977196523!GO:0035267;NuA4 histone acetyltransferase complex;0.0360584846830243!GO:0001832;blastocyst growth;0.0360630222062796!GO:0030911;TPR domain binding;0.0360630222062796!GO:0004672;protein kinase activity;0.0362370498876534!GO:0033673;negative regulation of kinase activity;0.0365246281753318!GO:0006469;negative regulation of protein kinase activity;0.0365246281753318!GO:0030384;phosphoinositide metabolic process;0.0365246281753318!GO:0031371;ubiquitin conjugating enzyme complex;0.0366273117746616!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0367568527554826!GO:0050178;phenylpyruvate tautomerase activity;0.037181433935419!GO:0006979;response to oxidative stress;0.0375541251495312!GO:0046489;phosphoinositide biosynthetic process;0.0378592148418317!GO:0045879;negative regulation of smoothened signaling pathway;0.0380218979295781!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0382586524282711!GO:0010257;NADH dehydrogenase complex assembly;0.0382586524282711!GO:0033108;mitochondrial respiratory chain complex assembly;0.0382586524282711!GO:0005680;anaphase-promoting complex;0.0387091717912566!GO:0046128;purine ribonucleoside metabolic process;0.038852907071503!GO:0042278;purine nucleoside metabolic process;0.038852907071503!GO:0051656;establishment of organelle localization;0.0390550603712387!GO:0004221;ubiquitin thiolesterase activity;0.0390550603712387!GO:0045792;negative regulation of cell size;0.0391343023676135!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.039727288038274!GO:0000123;histone acetyltransferase complex;0.0400501427973779!GO:0030031;cell projection biogenesis;0.0401989751722183!GO:0042168;heme metabolic process;0.0402970448903454!GO:0033559;unsaturated fatty acid metabolic process;0.0409619581187832!GO:0006636;unsaturated fatty acid biosynthetic process;0.0409619581187832!GO:0016790;thiolester hydrolase activity;0.0409796091373359!GO:0050790;regulation of catalytic activity;0.041176877898272!GO:0006354;RNA elongation;0.0411778033556072!GO:0006417;regulation of translation;0.0412402312700767!GO:0042026;protein refolding;0.0417926163731178!GO:0043596;nuclear replication fork;0.0427618262660992!GO:0004722;protein serine/threonine phosphatase activity;0.0427618262660992!GO:0030308;negative regulation of cell growth;0.0431365516954829!GO:0000077;DNA damage checkpoint;0.0435780373350114!GO:0051348;negative regulation of transferase activity;0.0441644826788994!GO:0009081;branched chain family amino acid metabolic process;0.0449178419469208!GO:0005758;mitochondrial intermembrane space;0.0453901142099275!GO:0006779;porphyrin biosynthetic process;0.0454223445047046!GO:0033014;tetrapyrrole biosynthetic process;0.0454223445047046!GO:0005652;nuclear lamina;0.0455052821521678!GO:0016585;chromatin remodeling complex;0.0456256589966977!GO:0016601;Rac protein signal transduction;0.0458591603257642!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.046027077571306!GO:0016791;phosphoric monoester hydrolase activity;0.046027077571306!GO:0046966;thyroid hormone receptor binding;0.0466078715808536!GO:0004448;isocitrate dehydrogenase activity;0.0476517298202148!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.048058259424433!GO:0007040;lysosome organization and biogenesis;0.0483765120650855!GO:0005765;lysosomal membrane;0.0487989075920794!GO:0019206;nucleoside kinase activity;0.0488810025459107!GO:0004680;casein kinase activity;0.0492514737026011!GO:0000781;chromosome, telomeric region;0.0496494348489037 | |||
|sample_id=11400 | |sample_id=11400 | ||
|sample_note= | |sample_note= | ||
Line 75: | Line 105: | ||
|sample_tissue=umbilical vein | |sample_tissue=umbilical vein | ||
|top_motifs=SOX{8,9,10}:1.62923572453;PAX6:1.3942560421;RXR{A,B,G}:1.29958592718;TFDP1:1.23969900217;HBP1_HMGB_SSRP1_UBTF:1.22623559639;NFATC1..3:1.1957141566;ADNP_IRX_SIX_ZHX:1.05823570263;IKZF2:1.03144009257;NFY{A,B,C}:0.967579042057;ALX1:0.959635675944;E2F1..5:0.943909651129;TLX1..3_NFIC{dimer}:0.909182492865;ZFP161:0.867334972441;FOX{I1,J2}:0.83959676905;GATA6:0.798644607241;XCPE1{core}:0.749979030256;GFI1:0.74655117624;TFAP2{A,C}:0.739059456755;HIC1:0.698746327201;ELF1,2,4:0.693312748073;SOX17:0.69096556515;SOX2:0.667746160263;AR:0.666205805076;PBX1:0.645562082161;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.638421961191;NRF1:0.624444608873;ZNF143:0.604677448016;PAX1,9:0.596376973681;POU3F1..4:0.577168892227;MYB:0.57541028913;SOX5:0.548279494417;POU1F1:0.5445692747;ETS1,2:0.502579941289;GFI1B:0.466970992635;HMGA1,2:0.459351085413;SP1:0.448428819896;FOXD3:0.448250542705;EGR1..3:0.439020504456;GZF1:0.425347387814;TFAP4:0.393963142897;PAX8:0.341605013887;SPIB:0.339286059451;TEAD1:0.337197924381;ONECUT1,2:0.331084744768;TFAP2B:0.306616188675;GATA4:0.296059926338;NR5A1,2:0.277760037894;YY1:0.275743328892;FOXA2:0.273452796504;PITX1..3:0.272019163765;RBPJ:0.270526195696;HES1:0.261687806751;ARID5B:0.257679222905;LEF1_TCF7_TCF7L1,2:0.244602193978;EN1,2:0.24285919841;CRX:0.231589968867;STAT5{A,B}:0.207147295082;IKZF1:0.205260972196;STAT1,3:0.201944521406;HOX{A5,B5}:0.194122754428;MTE{core}:0.173984279667;CDC5L:0.17045662923;NANOG:0.123306808715;BREu{core}:0.111188087424;MED-1{core}:0.106282586932;ZBTB16:0.104792992428;ZNF423:0.0997876310437;PAX3,7:0.0815755609096;HOXA9_MEIS1:0.0799389493766;bHLH_family:0.0677976225929;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0671208103145;MAZ:0.0668484986743;POU5F1:0.065972805286;MYOD1:0.0640828639248;GTF2I:0.056931421468;RORA:0.0523390230359;FOXQ1:0.0497475789549;SPI1:0.0430805586383;NFE2L2:0.0356935124325;NKX2-3_NKX2-5:0.0264184666914;NFE2:0.0244338969577;MZF1:0.0229799725893;CREB1:0.0117866981966;T:0.0109609137738;NR3C1:0.00550113278076;BACH2:0.00333874637819;HNF4A_NR2F1,2:0.00244373633489;ZIC1..3:-0.017847160867;PRDM1:-0.0239587118603;REST:-0.0284322789819;GTF2A1,2:-0.0386610217888;TGIF1:-0.0645236788618;FOXN1:-0.0649920723261;PATZ1:-0.0681790831416;FOS_FOS{B,L1}_JUN{B,D}:-0.0702087788918;CUX2:-0.0712323569079;SREBF1,2:-0.0732403771558;TP53:-0.0799313182607;FOSL2:-0.0809682019805;STAT2,4,6:-0.0830898951747;LHX3,4:-0.0852219827587;TAL1_TCF{3,4,12}:-0.0868257808506;PAX4:-0.0906681933361;MEF2{A,B,C,D}:-0.10464221968;ZBTB6:-0.106556225746;ZNF148:-0.112125528449;ZNF238:-0.117212904508;POU6F1:-0.120114625985;NKX2-2,8:-0.134164512186;ATF6:-0.147669297922;NANOG{mouse}:-0.167766265833;TEF:-0.169007588169;OCT4_SOX2{dimer}:-0.182564102003;HNF1A:-0.194971248788;PAX5:-0.202745286166;HAND1,2:-0.220047276968;NHLH1,2:-0.229108550505;IRF1,2:-0.243341223769;GLI1..3:-0.244221896838;PRRX1,2:-0.259883896892;DMAP1_NCOR{1,2}_SMARC:-0.272272509604;UFEwm:-0.295338849429;KLF4:-0.302525373615;LMO2:-0.316935349789;TOPORS:-0.317260530805;NFIX:-0.324867666994;FOX{D1,D2}:-0.336892592417;FOX{F1,F2,J1}:-0.347197756982;NFKB1_REL_RELA:-0.361007373056;IRF7:-0.365395755772;AHR_ARNT_ARNT2:-0.369244676822;PPARG:-0.386223924277;EVI1:-0.387099113811;XBP1:-0.387927123184;HOX{A6,A7,B6,B7}:-0.389409704382;SRF:-0.394398796122;EBF1:-0.395463762677;GCM1,2:-0.397371636724;SPZ1:-0.403538343814;FOXP1:-0.413921798451;POU2F1..3:-0.416815853831;PDX1:-0.430049200567;MTF1:-0.446084450235;PAX2:-0.47097612719;FOXO1,3,4:-0.473903524968;SMAD1..7,9:-0.489226079003;HLF:-0.489250873606;AIRE:-0.512644353146;HSF1,2:-0.519733642024;ATF2:-0.522717805434;ELK1,4_GABP{A,B1}:-0.526246643766;MYBL2:-0.527541830665;CDX1,2,4:-0.537988169649;RFX1:-0.544122257073;NR1H4:-0.557952309974;CEBPA,B_DDIT3:-0.572018906294;NKX3-2:-0.578944963143;FOXL1:-0.597571838572;TLX2:-0.610709320724;ATF4:-0.611406603707;TBP:-0.626985832801;ESRRA:-0.64101562972;MYFfamily:-0.672346920745;SNAI1..3:-0.680647645673;RUNX1..3:-0.682193618398;BPTF:-0.691242327833;RREB1:-0.720534289355;FOXM1:-0.723616506498;ALX4:-0.76659497541;VSX1,2:-0.779016587239;ZNF384:-0.79086895129;DBP:-0.814080689074;JUN:-0.844185176026;NFIL3:-0.848053799126;FOXP3:-0.863919674191;ATF5_CREB3:-0.882789551638;HOX{A4,D4}:-0.886033494504;NKX3-1:-0.895309049203;ZEB1:-0.901014739806;NFE2L1:-0.952982698063;HIF1A:-0.960091005342;TFCP2:-0.976333250781;NKX6-1,2:-1.00699821062;TBX4,5:-1.01732833076;EP300:-1.03509904444;NR6A1:-1.06845207956;ESR1:-1.08083266434;NKX2-1,4:-1.11221091147;RFX2..5_RFXANK_RFXAP:-1.13522122179;MAFB:-1.13902734707;HMX1:-1.26546217937;RXRA_VDR{dimer}:-1.31045581796 | |top_motifs=SOX{8,9,10}:1.62923572453;PAX6:1.3942560421;RXR{A,B,G}:1.29958592718;TFDP1:1.23969900217;HBP1_HMGB_SSRP1_UBTF:1.22623559639;NFATC1..3:1.1957141566;ADNP_IRX_SIX_ZHX:1.05823570263;IKZF2:1.03144009257;NFY{A,B,C}:0.967579042057;ALX1:0.959635675944;E2F1..5:0.943909651129;TLX1..3_NFIC{dimer}:0.909182492865;ZFP161:0.867334972441;FOX{I1,J2}:0.83959676905;GATA6:0.798644607241;XCPE1{core}:0.749979030256;GFI1:0.74655117624;TFAP2{A,C}:0.739059456755;HIC1:0.698746327201;ELF1,2,4:0.693312748073;SOX17:0.69096556515;SOX2:0.667746160263;AR:0.666205805076;PBX1:0.645562082161;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.638421961191;NRF1:0.624444608873;ZNF143:0.604677448016;PAX1,9:0.596376973681;POU3F1..4:0.577168892227;MYB:0.57541028913;SOX5:0.548279494417;POU1F1:0.5445692747;ETS1,2:0.502579941289;GFI1B:0.466970992635;HMGA1,2:0.459351085413;SP1:0.448428819896;FOXD3:0.448250542705;EGR1..3:0.439020504456;GZF1:0.425347387814;TFAP4:0.393963142897;PAX8:0.341605013887;SPIB:0.339286059451;TEAD1:0.337197924381;ONECUT1,2:0.331084744768;TFAP2B:0.306616188675;GATA4:0.296059926338;NR5A1,2:0.277760037894;YY1:0.275743328892;FOXA2:0.273452796504;PITX1..3:0.272019163765;RBPJ:0.270526195696;HES1:0.261687806751;ARID5B:0.257679222905;LEF1_TCF7_TCF7L1,2:0.244602193978;EN1,2:0.24285919841;CRX:0.231589968867;STAT5{A,B}:0.207147295082;IKZF1:0.205260972196;STAT1,3:0.201944521406;HOX{A5,B5}:0.194122754428;MTE{core}:0.173984279667;CDC5L:0.17045662923;NANOG:0.123306808715;BREu{core}:0.111188087424;MED-1{core}:0.106282586932;ZBTB16:0.104792992428;ZNF423:0.0997876310437;PAX3,7:0.0815755609096;HOXA9_MEIS1:0.0799389493766;bHLH_family:0.0677976225929;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0671208103145;MAZ:0.0668484986743;POU5F1:0.065972805286;MYOD1:0.0640828639248;GTF2I:0.056931421468;RORA:0.0523390230359;FOXQ1:0.0497475789549;SPI1:0.0430805586383;NFE2L2:0.0356935124325;NKX2-3_NKX2-5:0.0264184666914;NFE2:0.0244338969577;MZF1:0.0229799725893;CREB1:0.0117866981966;T:0.0109609137738;NR3C1:0.00550113278076;BACH2:0.00333874637819;HNF4A_NR2F1,2:0.00244373633489;ZIC1..3:-0.017847160867;PRDM1:-0.0239587118603;REST:-0.0284322789819;GTF2A1,2:-0.0386610217888;TGIF1:-0.0645236788618;FOXN1:-0.0649920723261;PATZ1:-0.0681790831416;FOS_FOS{B,L1}_JUN{B,D}:-0.0702087788918;CUX2:-0.0712323569079;SREBF1,2:-0.0732403771558;TP53:-0.0799313182607;FOSL2:-0.0809682019805;STAT2,4,6:-0.0830898951747;LHX3,4:-0.0852219827587;TAL1_TCF{3,4,12}:-0.0868257808506;PAX4:-0.0906681933361;MEF2{A,B,C,D}:-0.10464221968;ZBTB6:-0.106556225746;ZNF148:-0.112125528449;ZNF238:-0.117212904508;POU6F1:-0.120114625985;NKX2-2,8:-0.134164512186;ATF6:-0.147669297922;NANOG{mouse}:-0.167766265833;TEF:-0.169007588169;OCT4_SOX2{dimer}:-0.182564102003;HNF1A:-0.194971248788;PAX5:-0.202745286166;HAND1,2:-0.220047276968;NHLH1,2:-0.229108550505;IRF1,2:-0.243341223769;GLI1..3:-0.244221896838;PRRX1,2:-0.259883896892;DMAP1_NCOR{1,2}_SMARC:-0.272272509604;UFEwm:-0.295338849429;KLF4:-0.302525373615;LMO2:-0.316935349789;TOPORS:-0.317260530805;NFIX:-0.324867666994;FOX{D1,D2}:-0.336892592417;FOX{F1,F2,J1}:-0.347197756982;NFKB1_REL_RELA:-0.361007373056;IRF7:-0.365395755772;AHR_ARNT_ARNT2:-0.369244676822;PPARG:-0.386223924277;EVI1:-0.387099113811;XBP1:-0.387927123184;HOX{A6,A7,B6,B7}:-0.389409704382;SRF:-0.394398796122;EBF1:-0.395463762677;GCM1,2:-0.397371636724;SPZ1:-0.403538343814;FOXP1:-0.413921798451;POU2F1..3:-0.416815853831;PDX1:-0.430049200567;MTF1:-0.446084450235;PAX2:-0.47097612719;FOXO1,3,4:-0.473903524968;SMAD1..7,9:-0.489226079003;HLF:-0.489250873606;AIRE:-0.512644353146;HSF1,2:-0.519733642024;ATF2:-0.522717805434;ELK1,4_GABP{A,B1}:-0.526246643766;MYBL2:-0.527541830665;CDX1,2,4:-0.537988169649;RFX1:-0.544122257073;NR1H4:-0.557952309974;CEBPA,B_DDIT3:-0.572018906294;NKX3-2:-0.578944963143;FOXL1:-0.597571838572;TLX2:-0.610709320724;ATF4:-0.611406603707;TBP:-0.626985832801;ESRRA:-0.64101562972;MYFfamily:-0.672346920745;SNAI1..3:-0.680647645673;RUNX1..3:-0.682193618398;BPTF:-0.691242327833;RREB1:-0.720534289355;FOXM1:-0.723616506498;ALX4:-0.76659497541;VSX1,2:-0.779016587239;ZNF384:-0.79086895129;DBP:-0.814080689074;JUN:-0.844185176026;NFIL3:-0.848053799126;FOXP3:-0.863919674191;ATF5_CREB3:-0.882789551638;HOX{A4,D4}:-0.886033494504;NKX3-1:-0.895309049203;ZEB1:-0.901014739806;NFE2L1:-0.952982698063;HIF1A:-0.960091005342;TFCP2:-0.976333250781;NKX6-1,2:-1.00699821062;TBX4,5:-1.01732833076;EP300:-1.03509904444;NR6A1:-1.06845207956;ESR1:-1.08083266434;NKX2-1,4:-1.11221091147;RFX2..5_RFXANK_RFXAP:-1.13522122179;MAFB:-1.13902734707;HMX1:-1.26546217937;RXRA_VDR{dimer}:-1.31045581796 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11400-118D5;search_select_hide=table117:FF:11400-118D5 | |||
}} | }} |
Latest revision as of 17:58, 4 June 2020
Name: | Endothelial Cells - Umbilical vein, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12010 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12010
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12010
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.216 |
10 | 10 | 0.139 |
100 | 100 | 0.85 |
101 | 101 | 0.216 |
102 | 102 | 0.706 |
103 | 103 | 0.433 |
104 | 104 | 0.732 |
105 | 105 | 0.59 |
106 | 106 | 0.00474 |
107 | 107 | 0.35 |
108 | 108 | 0.666 |
109 | 109 | 0.246 |
11 | 11 | 0.144 |
110 | 110 | 0.947 |
111 | 111 | 0.478 |
112 | 112 | 0.13 |
113 | 113 | 0.154 |
114 | 114 | 0.146 |
115 | 115 | 0.871 |
116 | 116 | 0.286 |
117 | 117 | 0.581 |
118 | 118 | 0.45 |
119 | 119 | 0.242 |
12 | 12 | 0.918 |
120 | 120 | 0.58 |
121 | 121 | 0.132 |
122 | 122 | 0.748 |
123 | 123 | 0.0207 |
124 | 124 | 0.0193 |
125 | 125 | 0.31 |
126 | 126 | 0.414 |
127 | 127 | 0.385 |
128 | 128 | 0.0588 |
129 | 129 | 0.983 |
13 | 13 | 0.528 |
130 | 130 | 0.193 |
131 | 131 | 0.0631 |
132 | 132 | 0.794 |
133 | 133 | 0.965 |
134 | 134 | 0.898 |
135 | 135 | 0.885 |
136 | 136 | 0.0612 |
137 | 137 | 0.108 |
138 | 138 | 0.914 |
139 | 139 | 6.24976e-4 |
14 | 14 | 0.37 |
140 | 140 | 0.172 |
141 | 141 | 0.6 |
142 | 142 | 0.08 |
143 | 143 | 0.103 |
144 | 144 | 0.505 |
145 | 145 | 0.368 |
146 | 146 | 0.906 |
147 | 147 | 0.63 |
148 | 148 | 0.0119 |
149 | 149 | 0.525 |
15 | 15 | 0.192 |
150 | 150 | 0.672 |
151 | 151 | 0.283 |
152 | 152 | 0.895 |
153 | 153 | 0.0257 |
154 | 154 | 0.544 |
155 | 155 | 0.212 |
156 | 156 | 0.154 |
157 | 157 | 0.0394 |
158 | 158 | 0.18 |
159 | 159 | 0.335 |
16 | 16 | 0.112 |
160 | 160 | 0.746 |
161 | 161 | 0.128 |
162 | 162 | 0.645 |
163 | 163 | 0.882 |
164 | 164 | 0.922 |
165 | 165 | 0.411 |
166 | 166 | 0.506 |
167 | 167 | 0.0699 |
168 | 168 | 0.668 |
169 | 169 | 0.121 |
17 | 17 | 0.186 |
18 | 18 | 0.0279 |
19 | 19 | 0.268 |
2 | 2 | 0.608 |
20 | 20 | 0.578 |
21 | 21 | 0.4 |
22 | 22 | 0.511 |
23 | 23 | 0.0939 |
24 | 24 | 0.535 |
25 | 25 | 0.453 |
26 | 26 | 0.087 |
27 | 27 | 0.245 |
28 | 28 | 0.406 |
29 | 29 | 0.24 |
3 | 3 | 0.0598 |
30 | 30 | 0.697 |
31 | 31 | 0.337 |
32 | 32 | 7.60701e-4 |
33 | 33 | 0.737 |
34 | 34 | 0.601 |
35 | 35 | 0.0468 |
36 | 36 | 0.89 |
37 | 37 | 0.114 |
38 | 38 | 0.643 |
39 | 39 | 0.909 |
4 | 4 | 0.488 |
40 | 40 | 0.598 |
41 | 41 | 0.96 |
42 | 42 | 0.582 |
43 | 43 | 0.09 |
44 | 44 | 0.175 |
45 | 45 | 0.614 |
46 | 46 | 0.0267 |
47 | 47 | 0.353 |
48 | 48 | 0.594 |
49 | 49 | 0.104 |
5 | 5 | 0.188 |
50 | 50 | 0.933 |
51 | 51 | 0.502 |
52 | 52 | 0.317 |
53 | 53 | 0.509 |
54 | 54 | 0.34 |
55 | 55 | 0.135 |
56 | 56 | 0.432 |
57 | 57 | 0.527 |
58 | 58 | 0.0552 |
59 | 59 | 0.171 |
6 | 6 | 0.147 |
60 | 60 | 0.0445 |
61 | 61 | 0.578 |
62 | 62 | 0.0396 |
63 | 63 | 0.367 |
64 | 64 | 0.173 |
65 | 65 | 0.176 |
66 | 66 | 0.123 |
67 | 67 | 0.652 |
68 | 68 | 0.872 |
69 | 69 | 0.552 |
7 | 7 | 0.507 |
70 | 70 | 1.46095e-4 |
71 | 71 | 0.0321 |
72 | 72 | 0.85 |
73 | 73 | 0.989 |
74 | 74 | 0.953 |
75 | 75 | 0.434 |
76 | 76 | 0.821 |
77 | 77 | 0.0529 |
78 | 78 | 0.857 |
79 | 79 | 0.0306 |
8 | 8 | 0.515 |
80 | 80 | 0.407 |
81 | 81 | 0.0775 |
82 | 82 | 0.043 |
83 | 83 | 0.894 |
84 | 84 | 0.977 |
85 | 85 | 0.0145 |
86 | 86 | 0.519 |
87 | 87 | 0.504 |
88 | 88 | 0.309 |
89 | 89 | 0.0333 |
9 | 9 | 0.709 |
90 | 90 | 0.564 |
91 | 91 | 0.888 |
92 | 92 | 0.0989 |
93 | 93 | 0.741 |
94 | 94 | 0.0209 |
95 | 95 | 0.688 |
96 | 96 | 0.351 |
97 | 97 | 0.442 |
98 | 98 | 0.255 |
99 | 99 | 0.352 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12010
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000247 human endothelial cell of umbilical vein sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)
0002618 (endothelial cell of umbilical vein)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0010260 (umbilical blood vessel)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0002066 (umbilical vein)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)
0000247 (human endothelial cell of umbilical vein sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)