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{{f5samples
{{f5samples
|id=FF:10616-108G4
|DRA_sample_Accession=CAGE@SAMD00005203
|name=squamous cell carcinoma cell line:T3M-5
|accession_numbers=CAGE;DRX008016;DRR008888;DRZ000313;DRZ001698;DRZ011663;DRZ013048
|sample_id=10616
|rna_tube_id=108G4
|rna_box=108
|rna_position=G4
|sample_cell_lot=
|sample_cell_catalog=RCB1012
|sample_company=RIKEN Bioresource centre
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=thyroid
|sample_donor(cell lot)=
|sample_sex=female
|sample_age=71
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=2.13
|rna_od260/280=2.1
|sample_cell_type=unclassifiable
|sample_cell_line=T3M-5
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=squamous cell carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=39.10494
|rna_concentration=0.83202
|sample_note=
|profile_hcage=CNhs11739,LSID819,release009,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000076,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:1749,DOID:305,DOID:4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255
|sample_description=
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1749
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.32!208.91!EHF;;chr1:209979467..209979494,-!p1@IRF6!2.27!208.91!IRF6;;chr2:176969228..176969260,+!p1@HOXD11!1.74!53.64!HOXD11;;chr12:66218598..66218645,+!p2@HMGA2!1.69!212.44!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!1.66!50.46!BNC1;;chr3:189507432..189507459,+!p1@TP63!1.64!42.70!TP63;;chr2:114036488..114036504,-!p1@PAX8!1.59!38.11!PAX8;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!48.35!FOXQ1;;chr10:8096631..8096660,+!p1@GATA3!1.49!36.35!GATA3;;chr12:77459306..77459365,-!p1@E2F7!1.48!346.90!E2F7;;chr1:209979411..209979433,-!p2@IRF6!1.47!28.58!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!1.45!71.64!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!1.44!100.58!FOSL1;;chr12:66218836..66218888,+!p1@HMGA2!1.43!232.20!HMGA2;;chr12:54785054..54785072,-!p4@ZNF385A!1.40!27.17!ZNF385A;;chr6:10412600..10412637,-!p1@TFAP2A!1.39!39.17!TFAP2A;;chr12:54785074..54785122,-!p2@ZNF385A!1.39!36.00!ZNF385A;;chr3:111314186..111314204,-!p1@ZBED2!1.39!23.29!ZBED2;;chr12:66218003..66218018,+!p9@HMGA2!1.38!27.53!HMGA2;;chr10:8096772..8096787,+!p2@GATA3!1.33!24.00!GATA3;;chr1:6479968..6479986,-!p1@HES2!1.33!20.47!HES2;;chr15:67418119..67418162,+!p5@SMAD3!1.32!21.88!SMAD3;;chr17:8027418..8027432,-!p1@HES7!1.32!20.12!HES7;;chr5:72744594..72744609,-!p1@FOXD1!1.30!83.99!FOXD1;;chr11:120107344..120107351,+!p1@POU2F3!1.28!21.88!POU2F3;;chr12:27485762..27485776,+!p3@ARNTL2!1.27!46.94!ARNTL2;;chr11:65667846..65667868,-!p1@FOSL1!1.25!428.77!FOSL1;;chr17:70117153..70117174,+!p1@SOX9!1.24!166.57!SOX9;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.24!16.23!SOHLH2;;chr11:34642656..34642667,+!p2@EHF!1.22!15.53!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.22!15.53!ELF3;;chr15:67418047..67418093,+!p4@SMAD3!1.21!19.06!SMAD3;;chr7:101917447..101917479,+!p4@CUX1!1.18!14.12!CUX1;;chr8:102504651..102504683,+!p1@GRHL2!1.18!14.12!GRHL2;;chr8:10588010..10588030,-!p1@SOX7!1.17!13.76!SOX7;;chr2:176969179..176969226,+!p2@HOXD11!1.16!13.41!HOXD11;;chr5:134369905..134369972,-!p1@PITX1!1.13!19.06!PITX1;;chr5:172662197..172662216,-!p1@NKX2-5!1.11!12.00!NKX2-5;;chr12:66218573..66218596,+!p7@HMGA2!1.09!16.94!HMGA2;;chr3:32023232..32023273,+!p1@ZNF860!1.09!16.23!ZNF860;;chr2:46524897..46524911,+!p2@EPAS1!1.08!31.41!EPAS1;;chr7:28448965..28448994,+!p2@CREB5!1.07!37.76!CREB5;;chr5:137804405..137804444,+!p3@EGR1!1.07!13.06!EGR1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.06!92.81!PPP1R13L;;chr5:134369879..134369898,-!p2@PITX1!1.06!10.59!PITX1;;chr17:7492684..7492778,-!p2@SOX15!1.05!21.88!SOX15;;chr1:24645832..24645853,+!p1@GRHL3!1.04!9.88!GRHL3;;chr10:44101850..44101896,+!p1@ZNF485!1.03!31.05!ZNF485;;chr13:73633131..73633149,+!p1@KLF5!1.01!101.28!KLF5;;chr6:34210478..34210481,+!p8@HMGA1!0.99!8.82!HMGA1;;chr6:10413188..10413249,-!p7@TFAP2A!0.98!8.47!TFAP2A;;chr12:66218443..66218461,+!p8@HMGA2!0.96!10.59!HMGA2;;chr3:37217736..37217753,-!p2@LRRFIP2!0.95!34.23!LRRFIP2;;chr12:96588368..96588394,+!p3@ELK3!0.95!21.88!ELK3;;chr5:72744445..72744466,-!p2@FOXD1!0.95!13.41!FOXD1;;chr19:33865009..33865090,+!p3@CEBPG!0.95!10.59!CEBPG;;chr19:45971246..45971265,+!p1@FOSB!0.94!148.92!FOSB;;chr7:101917407..101917443,+!p3@CUX1!0.94!7.76!CUX1;;chr7:28610099..28610113,+!p5@CREB5!0.94!7.76!CREB5;;chr21:36421535..36421610,-!p2@RUNX1!0.93!27.53!RUNX1;;chr6:106534192..106534224,+!p1@PRDM1!0.92!21.17!PRDM1;;chr15:74833584..74833626,+!p1@ARID3B!0.92!17.64!ARID3B;;chr10:44101902..44101932,+!p2@ZNF485!0.92!15.17!ZNF485;;chr19:53496768..53496799,-!p1@ZNF702P!0.92!11.65!ZNF702P;;chr6:10412392..10412409,-!p4@TFAP2A!0.92!8.47!TFAP2A;;chr11:65686732..65686756,+!p2@DRAP1!0.91!31.41!DRAP1;;chr12:66218378..66218401,+!p6@HMGA2!0.91!11.29!HMGA2;;chr10:64018918..64018936,+!p2@ZNF365!0.91!7.06!ZNF365;;chr1:158979792..158979814,+!p2@IFI16!0.90!69.87!IFI16;;chr7:99156434..99156510,+!p2@ZNF655!0.90!44.46!ZNF655;;chr5:137801160..137801176,+!p1@EGR1!0.89!706.85!EGR1;;chr10:44070016..44070069,-!p1@ZNF239!0.89!21.17!ZNF239;;chr10:8095593..8095625,+!p3@GATA3!0.89!8.12!GATA3;;chr17:35294075..35294102,+!p1@ENST00000559335!0.89!6.71!LHX1;;chr3:141087562..141087594,+!p12@ZBTB38!0.89!6.71!ZBTB38;;chr10:43134001..43134026,-!p1@ZNF33B!0.88!31.05!ZNF33B;;chr11:64764435..64764449,-!p1@BATF2!0.88!9.18!BATF2;;chr7:28725740..28725778,+!p1@CREB5!0.87!60.70!CREB5;;chr19:45579725..45579743,-!p1@ZNF296!0.87!30.35!ZNF296;;chr10:64134120..64134183,+!p1@ZNF365!0.87!7.76!ZNF365;;chr12:27485823..27485868,+!p2@ARNTL2!0.85!26.11!ARNTL2;;chr18:3447536..3447542,+!p23@TGIF1!0.85!6.00!TGIF1;;chr2:172967621..172967637,-!p1@DLX2!0.84!16.59!DLX2;;chr6:106534230..106534254,+!p2@PRDM1!0.84!15.53!PRDM1;;chr5:137804357..137804390,+!p4@EGR1!0.84!7.06!EGR1;;chr6:34204921..34204939,+!p3@HMGA1!0.83!185.27!HMGA1;;chr5:72743793..72743855,-!p4@FOXD1!0.82!6.71!FOXD1;;chr7:99156011..99156036,+!p7@ZNF655!0.82!6.71!ZNF655;;chr11:65668011..65668020,-!p3@FOSL1!0.82!5.65!FOSL1;;chr12:48298765..48298783,-!p2@VDR!0.81!12.00!VDR;;chr8:49833978..49833996,-!p1@SNAI2!0.80!118.93!SNAI2;;chr11:64073022..64073056,+!p1@ESRRA!0.80!69.52!ESRRA;;chr8:49833948..49833973,-!p2@SNAI2!0.80!36.70!SNAI2;;chr7:101917482..101917507,+!p6@CUX1!0.80!5.29!CUX1;;chr1:24646263..24646277,+!p4@GRHL3!0.80!5.29!GRHL3;;chr15:67418177..67418204,+!p9@SMAD3!0.80!5.29!SMAD3;;chr16:86612320..86612394,+!p1@FOXL1!0.80!5.29!FOXL1;;chr12:66218420..66218439,+!p12@HMGA2!0.80!5.29!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.80!5.29!HMGA2;;chr12:96588143..96588185,+!p1@ELK3!0.79!68.46!ELK3;;chr7:99156314..99156372,+!p4@ZNF655!0.78!18.00!ZNF655;;chr6:10412576..10412599,-!p5@TFAP2A!0.77!4.94!TFAP2A;;chr14:37131058..37131139,+!p1@PAX9!0.77!4.94!PAX9;;chr1:43148855..43148908,+!p4@YBX1!0.76!7.76!YBX1;;chr20:50721803..50721857,-!p2@ZFP64!0.76!7.76!ZFP64;;chr3:141087339..141087387,+!p2@ZBTB38!0.75!52.93!ZBTB38;;chr19:12203100..12203132,+!p1@ZNF788!0.75!9.88!ZNF788;;chr19:57792157..57792170,+!p6@ZNF460!0.75!7.06!ZNF460;;chr1:40367668..40367684,-!p2@MYCL1!0.75!4.59!MYCL1;;chr12:54393880..54393962,+!p1@HOXC9!0.75!4.59!HOXC9;;chr12:66218923..66218934,+!p14@HMGA2!0.75!4.59!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.75!4.59!HMGA2;;chr9:100615499..100615519,+!p1@FOXE1!0.75!4.59!FOXE1;;chr3:178789220..178789255,-!p6@ZMAT3!0.75!4.59!ZMAT3;;chr9:137263790..137263815,+!p7@RXRA!0.75!4.59!RXRA;;chr11:128392273..128392308,-!p2@ETS1!0.73!20.47!ETS1;;chr19:9785724..9785740,-!p2@ZNF562!0.73!19.06!ZNF562;;chr3:141087393..141087426,+!p3@ZBTB38!0.73!19.06!ZBTB38;;chr19:33864571..33864596,+!p2@CEBPG!0.73!11.65!CEBPG;;chr11:65686802..65686818,+!p6@DRAP1!0.73!8.12!DRAP1;;chr19:53193731..53193767,-!p1@ZNF83!0.72!42.35!ZNF83;;chr3:141868357..141868393,-!p3@TFDP2!0.72!31.41!TFDP2;;chr13:41593425..41593480,-!p1@ELF1!0.72!30.35!ELF1;;chr3:24536253..24536328,-!p1@THRB!0.72!8.47!THRB;;chr2:113999263..113999274,-!p13@PAX8!0.72!4.23!PAX8;;chr1:201979743..201979762,+!p1@ELF3!0.72!4.23!ELF3;;chr15:83953373..83953386,-!p2@BNC1!0.72!4.23!BNC1;;chr17:41622731..41622764,-!p5@ETV4!0.72!4.23!ETV4;;chr5:50679228..50679288,+!p1@ISL1!0.72!4.23!ISL1;;chr1:158979872..158979898,+!p3@IFI16!0.71!14.12!IFI16;;chr7:99613250..99613264,+!p2@ZKSCAN1!0.71!13.41!ZKSCAN1;;chr12:27485785..27485816,+!p1@ARNTL2!0.70!31.76!ARNTL2;;chr1:40367530..40367597,-!p1@MYCL1!0.70!7.76!MYCL1;;chr3:168864315..168864339,-!p2@MECOM!0.70!7.06!MECOM;;chr15:96869114..96869160,+!p11@NR2F2!0.70!5.65!NR2F2;;chr11:47236584..47236679,+!p1@DDB2!0.69!48.70!DDB2;;chr2:192015701..192015743,-!p1@STAT4!0.69!5.65!STAT4;;chr3:69811882..69811898,+!p6@MITF!0.69!3.88!MITF;;chr11:65554528..65554546,+!p1@OVOL1!0.69!3.88!OVOL1;;chr3:150126759..150126784,+!p2@TSC22D2!0.68!19.41!TSC22D2;;chr1:43148792..43148849,+!p2@YBX1!0.68!16.23!YBX1;;chr2:169312600..169312606,+!p2@CERS6!0.68!6.35!CERS6;;chr3:178789522..178789564,-!p2@ZMAT3!0.67!31.41!ZMAT3;;chr12:96588219..96588263,+!p2@ELK3!0.67!30.70!ELK3;;chr4:4291837..4291859,-!p2@LYAR!0.67!13.41!LYAR;;chr10:48355030..48355090,+!p1@ZNF488!0.67!4.94!ZNF488;;chr17:38256822..38256851,-!p1@NR1D1!0.66!32.11!NR1D1;;chr3:40566488..40566502,+!p3@ZNF621!0.66!7.06!ZNF621;;chr10:8097321..8097348,+!p4@GATA3!0.66!3.53!GATA3;;chr1:209979449..209979460,-!p3@IRF6!0.66!3.53!IRF6;;chr19:58694421..58694485,+!p1@ZNF274!0.65!21.17!ZNF274;;chr8:22550982..22550999,-!p1@EGR3!0.65!10.94!EGR3;;chr1:59249645..59249656,-!p4@JUN!0.65!9.88!JUN;;chr19:33793430..33793447,-!p1@CEBPA!0.63!15.88!CEBPA;;chr17:41622925..41622976,-!p3@ETV4!0.63!5.29!ETV4;;chr5:72744562..72744573,-!p3@FOXD1!0.63!4.23!FOXD1;;chr12:80084737..80084763,-!p3@PAWR!0.62!13.76!PAWR;;chr17:46687959..46688007,-!p2@HOXB7!0.62!4.59!HOXB7;;chr15:101069113..101069169,-!p1@CERS3!0.62!3.18!CERS3;;chr15:67418099..67418118,+!p16@SMAD3!0.62!3.18!SMAD3;;chr17:46703240..46703257,-!p6@HOXB9!0.62!3.18!HOXB9;;chr8:102504690..102504704,+!p3@GRHL2!0.62!3.18!GRHL2;;chr12:66357214..66357233,+!p13@HMGA2!0.62!3.18!HMGA2;;chr19:58740449..58740456,+!p3@ZNF544!0.62!3.18!ZNF544;;chr20:18038521..18038571,-!p1@OVOL2!0.62!3.18!OVOL2;;chr7:99613212..99613236,+!p1@ZKSCAN1!0.61!129.51!ZKSCAN1;;chr19:9695169..9695188,-!p1@ZNF121!0.61!65.64!ZNF121;;chr6:28973366..28973394,-!p2@ZNF311!0.61!3.88!ZNF311;;chr6:34204672..34204692,+!p1@HMGA1!0.60!407.24!HMGA1;;chr3:193853927..193853944,+!p1@HES1!0.60!118.93!HES1;;chr12:7079780..7079791,-!p2@PHB2!0.60!18.35!PHB2;;chr14:73360799..73360817,-!p1@DPF3!0.60!12.00!DPF3;;chr13:45010939..45011033,-!p1@TSC22D1!0.59!235.73!TSC22D1;;chr4:47916588..47916607,-!p1@NFXL1!0.59!29.29!NFXL1;;chr20:48599506..48599526,+!p1@SNAI1!0.59!22.23!SNAI1;;chr7:99156145..99156207,+!p5@ZNF655!0.59!11.65!ZNF655;;chr18:19749541..19749557,+!p1@GATA6!0.59!10.59!GATA6;;chr12:66218212..66218244,+!p5@HMGA2!0.59!4.59!HMGA2;;chr11:6947647..6947698,+!p2@ZNF215!0.59!4.23!ZNF215;;chr3:169490606..169490621,+!p3@MYNN!0.59!4.23!MYNN;;chr20:55204351..55204377,+!p1@TFAP2C!0.59!3.88!TFAP2C;;chr7:27135591..27135658,-!p1@HOXA1!0.58!6.00!HOXA1;;chr18:19749517..19749531,+!p3@GATA6!0.58!5.65!GATA6;;chr1:24645921..24645973,+!p2@GRHL3!0.58!2.82!GRHL3;;chr22:24093154..24093183,-!p2@ZNF70!0.58!2.82!ZNF70;;chr3:189507460..189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|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
|fonse_cell_line_closure=FF:0101120
Line 66: Line 39:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|rna_box=108
|rna_catalog_number=
|rna_concentration=0.83202
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.13
|rna_od260/280=2.1
|rna_position=G4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=108G4
|rna_weight_ug=39.10494
|sample_age=71
|sample_category=cell lines
|sample_cell_catalog=RCB1012
|sample_cell_line=T3M-5
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=squamous cell carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.32485843778571e-231!GO:0043226;organelle;5.2238358348898e-186!GO:0043229;intracellular organelle;3.21842386226566e-185!GO:0043231;intracellular membrane-bound organelle;5.41132955964784e-175!GO:0043227;membrane-bound organelle;5.41132955964784e-175!GO:0005737;cytoplasm;1.12899297869212e-172!GO:0044422;organelle part;1.96027698419312e-131!GO:0044446;intracellular organelle part;6.30435296380163e-130!GO:0044444;cytoplasmic part;1.99046513085584e-112!GO:0032991;macromolecular complex;1.10764520646194e-97!GO:0030529;ribonucleoprotein complex;5.13525333275091e-87!GO:0044238;primary metabolic process;1.46968027776534e-83!GO:0044237;cellular metabolic process;1.91823357352908e-82!GO:0043170;macromolecule metabolic process;1.14769999725145e-81!GO:0005634;nucleus;5.4545028540675e-76!GO:0005515;protein binding;3.21148170582664e-73!GO:0003723;RNA binding;7.93442925899601e-73!GO:0043233;organelle lumen;1.56513821386489e-71!GO:0031974;membrane-enclosed lumen;1.56513821386489e-71!GO:0044428;nuclear part;1.99359709712047e-71!GO:0005739;mitochondrion;1.44214206804257e-57!GO:0019538;protein metabolic process;8.09425869363414e-57!GO:0006412;translation;1.43057689518997e-55!GO:0006396;RNA processing;5.36985511105007e-52!GO:0005840;ribosome;2.35255942199583e-51!GO:0044267;cellular protein metabolic process;3.3811267681112e-51!GO:0044260;cellular macromolecule metabolic process;1.57617228124831e-50!GO:0043283;biopolymer metabolic process;5.06945735255982e-48!GO:0043234;protein complex;6.23859395308988e-48!GO:0033036;macromolecule localization;2.4371625627413e-47!GO:0010467;gene expression;2.68041142012182e-47!GO:0015031;protein transport;3.72715931302848e-47!GO:0031981;nuclear lumen;2.07844336992564e-46!GO:0016043;cellular component organization and biogenesis;5.56604993617857e-45!GO:0003735;structural constituent of ribosome;1.02536488038448e-44!GO:0045184;establishment of protein localization;1.60891879786996e-43!GO:0008104;protein localization;1.70164934880567e-43!GO:0031090;organelle membrane;3.2777791243866e-43!GO:0009059;macromolecule biosynthetic process;1.5649274909273e-39!GO:0033279;ribosomal subunit;1.26134956431892e-38!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.32600887727028e-38!GO:0005829;cytosol;1.43200120426361e-37!GO:0046907;intracellular transport;3.46435211006343e-37!GO:0044249;cellular biosynthetic process;4.90455085320165e-37!GO:0016071;mRNA metabolic process;7.47887919730826e-37!GO:0009058;biosynthetic process;2.12515643059389e-36!GO:0043228;non-membrane-bound organelle;4.07261764785594e-36!GO:0043232;intracellular non-membrane-bound organelle;4.07261764785594e-36!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.81857595770509e-36!GO:0044429;mitochondrial part;6.96040217603721e-36!GO:0008380;RNA splicing;3.03955226232835e-35!GO:0031967;organelle envelope;1.23207722525567e-33!GO:0031975;envelope;2.69406904630445e-33!GO:0006397;mRNA processing;2.74591630512582e-33!GO:0006886;intracellular protein transport;3.63493127636029e-33!GO:0065003;macromolecular complex assembly;1.88305641722248e-32!GO:0022607;cellular component assembly;8.14888506122509e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.0207296498826e-27!GO:0005654;nucleoplasm;1.50171774141469e-26!GO:0006996;organelle organization and biogenesis;2.58553892440323e-26!GO:0005681;spliceosome;4.61434932381047e-25!GO:0051649;establishment of cellular localization;9.67256737358523e-25!GO:0051641;cellular localization;1.50458669377386e-24!GO:0044445;cytosolic part;5.70078150235223e-24!GO:0003676;nucleic acid binding;8.05938562885292e-24!GO:0005730;nucleolus;3.41533670298397e-23!GO:0000166;nucleotide binding;2.74036681426994e-22!GO:0044451;nucleoplasm part;7.81977198508429e-22!GO:0005740;mitochondrial envelope;9.42014136104289e-22!GO:0016070;RNA metabolic process;2.31330140991436e-21!GO:0019866;organelle inner membrane;6.7104563607665e-21!GO:0031966;mitochondrial membrane;1.2018047444175e-20!GO:0015934;large ribosomal subunit;1.71081755586165e-20!GO:0022618;protein-RNA complex assembly;2.63518472124992e-20!GO:0016462;pyrophosphatase activity;2.69471250244795e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.01781416455907e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;4.75505184923289e-20!GO:0017111;nucleoside-triphosphatase activity;6.41939298434547e-20!GO:0005743;mitochondrial inner membrane;3.07568053444556e-19!GO:0015935;small ribosomal subunit;3.57349402737421e-19!GO:0012505;endomembrane system;4.73708656192159e-19!GO:0006119;oxidative phosphorylation;6.43616924200173e-19!GO:0016874;ligase activity;6.74450538460557e-19!GO:0006259;DNA metabolic process;7.09370725985845e-19!GO:0006457;protein folding;9.58508736716771e-19!GO:0006512;ubiquitin cycle;2.24005684620623e-18!GO:0008134;transcription factor binding;5.26725108228012e-18!GO:0007049;cell cycle;1.33601220303292e-17!GO:0044455;mitochondrial membrane part;1.37541436041142e-17!GO:0042254;ribosome biogenesis and assembly;1.04661991335963e-16!GO:0031980;mitochondrial lumen;1.10873093980385e-16!GO:0005759;mitochondrial matrix;1.10873093980385e-16!GO:0043412;biopolymer modification;1.52953994567638e-16!GO:0008135;translation factor activity, nucleic acid binding;1.52953994567638e-16!GO:0006605;protein targeting;2.11657812554204e-16!GO:0032553;ribonucleotide binding;2.50937084365635e-15!GO:0032555;purine ribonucleotide binding;2.50937084365635e-15!GO:0051082;unfolded protein binding;3.85742526494699e-15!GO:0017076;purine nucleotide binding;4.0648074812182e-15!GO:0043285;biopolymer catabolic process;5.65999077140488e-15!GO:0005783;endoplasmic reticulum;7.51104682597736e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;7.91227726540024e-15!GO:0019941;modification-dependent protein catabolic process;7.91227726540024e-15!GO:0043632;modification-dependent macromolecule catabolic process;7.91227726540024e-15!GO:0005794;Golgi apparatus;8.86582461351198e-15!GO:0048770;pigment granule;8.86582461351198e-15!GO:0042470;melanosome;8.86582461351198e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.06497006972415e-14!GO:0006464;protein modification process;1.15726591219867e-14!GO:0005761;mitochondrial ribosome;1.15726591219867e-14!GO:0000313;organellar ribosome;1.15726591219867e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.75061722602015e-14!GO:0044257;cellular protein catabolic process;2.24760229970276e-14!GO:0044265;cellular macromolecule catabolic process;2.78927080202308e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.66673677514249e-14!GO:0005746;mitochondrial respiratory chain;5.69687731126215e-14!GO:0048193;Golgi vesicle transport;9.90340971887015e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.02377195922605e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;1.14772860001241e-13!GO:0000375;RNA splicing, via transesterification reactions;1.14772860001241e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.14772860001241e-13!GO:0043687;post-translational protein modification;1.49422224385535e-13!GO:0022402;cell cycle process;1.94018783954343e-13!GO:0006913;nucleocytoplasmic transport;6.88038247066016e-13!GO:0005524;ATP binding;7.30309750537762e-13!GO:0016192;vesicle-mediated transport;7.30358004479604e-13!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.67464865999602e-13!GO:0030163;protein catabolic process;7.67464865999602e-13!GO:0003743;translation initiation factor activity;7.87874407985561e-13!GO:0044432;endoplasmic reticulum part;8.41118255224839e-13!GO:0006413;translational initiation;8.78538772079162e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.03947397726213e-12!GO:0003954;NADH dehydrogenase activity;1.03947397726213e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.03947397726213e-12!GO:0009057;macromolecule catabolic process;1.06192617577858e-12!GO:0051169;nuclear transport;1.32647544646579e-12!GO:0012501;programmed cell death;1.45499859997816e-12!GO:0032559;adenyl ribonucleotide binding;1.66922523188899e-12!GO:0006399;tRNA metabolic process;2.1162827461689e-12!GO:0006915;apoptosis;2.22387872420416e-12!GO:0030554;adenyl nucleotide binding;3.58881089232138e-12!GO:0006974;response to DNA damage stimulus;3.73768701357258e-12!GO:0005635;nuclear envelope;3.82164440149282e-12!GO:0006446;regulation of translational initiation;6.74411273672246e-12!GO:0003712;transcription cofactor activity;9.52409106244439e-12!GO:0000278;mitotic cell cycle;1.92266422346297e-11!GO:0006366;transcription from RNA polymerase II promoter;2.95680787544416e-11!GO:0006364;rRNA processing;4.24965500397234e-11!GO:0016072;rRNA metabolic process;4.38055285523379e-11!GO:0031965;nuclear membrane;5.17156284950902e-11!GO:0016604;nuclear body;6.43305179931655e-11!GO:0008219;cell death;6.62386471790548e-11!GO:0016265;death;6.62386471790548e-11!GO:0008639;small protein conjugating enzyme activity;7.39584421186398e-11!GO:0042775;organelle ATP synthesis coupled electron transport;7.67733233365811e-11!GO:0042773;ATP synthesis coupled electron transport;7.67733233365811e-11!GO:0030964;NADH dehydrogenase complex (quinone);7.73581938312459e-11!GO:0045271;respiratory chain complex I;7.73581938312459e-11!GO:0005747;mitochondrial respiratory chain complex I;7.73581938312459e-11!GO:0044453;nuclear membrane part;9.12708418095142e-11!GO:0006461;protein complex assembly;9.30979707731483e-11!GO:0004386;helicase activity;1.54381577771363e-10!GO:0004842;ubiquitin-protein ligase activity;1.61761123655706e-10!GO:0019787;small conjugating protein ligase activity;2.17480436566067e-10!GO:0016887;ATPase activity;2.20352096247802e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.56520813728721e-10!GO:0017038;protein import;2.91677838394432e-10!GO:0044248;cellular catabolic process;4.11019923441301e-10!GO:0051726;regulation of cell cycle;4.16919987490956e-10!GO:0000074;regulation of progression through cell cycle;4.71068537589047e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.16575582763713e-10!GO:0006281;DNA repair;5.28604302084074e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;8.50239911866654e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.4251484910802e-10!GO:0008026;ATP-dependent helicase activity;1.10703639909326e-09!GO:0005789;endoplasmic reticulum membrane;1.47591370503651e-09!GO:0050794;regulation of cellular process;1.54166469227336e-09!GO:0005643;nuclear pore;1.69815466848259e-09!GO:0042623;ATPase activity, coupled;2.06977728943912e-09!GO:0051186;cofactor metabolic process;2.41861435041383e-09!GO:0005768;endosome;3.03730257819637e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.26809305037317e-09!GO:0004812;aminoacyl-tRNA ligase activity;3.26809305037317e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.26809305037317e-09!GO:0008565;protein transporter activity;4.03227339946617e-09!GO:0016881;acid-amino acid ligase activity;4.31786869539916e-09!GO:0043038;amino acid activation;7.87406525241067e-09!GO:0006418;tRNA aminoacylation for protein translation;7.87406525241067e-09!GO:0043039;tRNA aminoacylation;7.87406525241067e-09!GO:0048523;negative regulation of cellular process;9.07583284694837e-09!GO:0016787;hydrolase activity;1.05533113789872e-08!GO:0009055;electron carrier activity;1.38775065689367e-08!GO:0005793;ER-Golgi intermediate compartment;1.66823880966507e-08!GO:0006403;RNA localization;1.76144480346954e-08!GO:0005694;chromosome;1.76144480346954e-08!GO:0016607;nuclear speck;1.87440079534065e-08!GO:0065002;intracellular protein transport across a membrane;1.97601227780462e-08!GO:0051246;regulation of protein metabolic process;2.07536013517175e-08!GO:0000087;M phase of mitotic cell cycle;2.2061736794709e-08!GO:0009719;response to endogenous stimulus;2.46276112596395e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.46411499836372e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.57649861162268e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.71533707697369e-08!GO:0050657;nucleic acid transport;3.01095327378659e-08!GO:0051236;establishment of RNA localization;3.01095327378659e-08!GO:0050658;RNA transport;3.01095327378659e-08!GO:0007067;mitosis;3.45353402213062e-08!GO:0046930;pore complex;4.02384242485778e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.45778038294421e-08!GO:0042981;regulation of apoptosis;4.61467687550421e-08!GO:0043067;regulation of programmed cell death;4.70136639591112e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;5.4344358526517e-08!GO:0016779;nucleotidyltransferase activity;7.35566545897891e-08!GO:0009259;ribonucleotide metabolic process;8.09663398849711e-08!GO:0048475;coated membrane;8.36406591221962e-08!GO:0030117;membrane coat;8.36406591221962e-08!GO:0051276;chromosome organization and biogenesis;1.08755647064209e-07!GO:0006732;coenzyme metabolic process;1.23291453639347e-07!GO:0006163;purine nucleotide metabolic process;1.27118055341153e-07!GO:0030120;vesicle coat;1.27848177297485e-07!GO:0030662;coated vesicle membrane;1.27848177297485e-07!GO:0007005;mitochondrion organization and biogenesis;1.30671209186874e-07!GO:0032446;protein modification by small protein conjugation;1.44570401773653e-07!GO:0003924;GTPase activity;1.66212311512997e-07!GO:0015986;ATP synthesis coupled proton transport;1.80050993765008e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.80050993765008e-07!GO:0006260;DNA replication;1.93144073937138e-07!GO:0016567;protein ubiquitination;2.13213440764034e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.27535496856933e-07!GO:0006164;purine nucleotide biosynthetic process;2.27673266608238e-07!GO:0048519;negative regulation of biological process;2.28550917355324e-07!GO:0009260;ribonucleotide biosynthetic process;2.56195489792479e-07!GO:0009150;purine ribonucleotide metabolic process;3.71839233023383e-07!GO:0051170;nuclear import;4.40676072885872e-07!GO:0006888;ER to Golgi vesicle-mediated transport;5.24509004015826e-07!GO:0022403;cell cycle phase;6.52125986161792e-07!GO:0009152;purine ribonucleotide biosynthetic process;6.71917891803678e-07!GO:0005667;transcription factor complex;7.06127203948815e-07!GO:0016564;transcription repressor activity;7.63142533426908e-07!GO:0030532;small nuclear ribonucleoprotein complex;8.83067704195287e-07!GO:0006793;phosphorus metabolic process;9.10787172425517e-07!GO:0006796;phosphate metabolic process;9.10787172425517e-07!GO:0043623;cellular protein complex assembly;9.37323529218294e-07!GO:0006916;anti-apoptosis;9.37323529218294e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;9.4295600681104e-07!GO:0044427;chromosomal part;9.5445772904803e-07!GO:0043069;negative regulation of programmed cell death;9.88835188643816e-07!GO:0006606;protein import into nucleus;9.92233226718247e-07!GO:0044431;Golgi apparatus part;1.18488981205153e-06!GO:0019829;cation-transporting ATPase activity;1.19332957676543e-06!GO:0000245;spliceosome assembly;1.39610105936512e-06!GO:0051028;mRNA transport;1.40632376919266e-06!GO:0006754;ATP biosynthetic process;1.43445112799792e-06!GO:0006753;nucleoside phosphate metabolic process;1.43445112799792e-06!GO:0031324;negative regulation of cellular metabolic process;1.44905499569649e-06!GO:0051188;cofactor biosynthetic process;1.46955258502372e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.56048679256508e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.56048679256508e-06!GO:0016563;transcription activator activity;1.84144992584896e-06!GO:0043066;negative regulation of apoptosis;1.92395891926194e-06!GO:0009141;nucleoside triphosphate metabolic process;1.98578376147241e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.16484408813355e-06!GO:0043566;structure-specific DNA binding;2.60531264870126e-06!GO:0048522;positive regulation of cellular process;2.85209562507503e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.85209562507503e-06!GO:0006323;DNA packaging;2.85209562507503e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.8893537500666e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.8893537500666e-06!GO:0046034;ATP metabolic process;3.09921348801975e-06!GO:0009056;catabolic process;3.20333564328047e-06!GO:0015630;microtubule cytoskeleton;3.25612256787006e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.8296703775091e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.8296703775091e-06!GO:0007243;protein kinase cascade;3.83931688897974e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.18576155651825e-06!GO:0003899;DNA-directed RNA polymerase activity;4.35762515285589e-06!GO:0003724;RNA helicase activity;4.36976489618081e-06!GO:0005813;centrosome;4.52147655486493e-06!GO:0003714;transcription corepressor activity;4.67571645668303e-06!GO:0003697;single-stranded DNA binding;4.74089720248566e-06!GO:0005839;proteasome core complex (sensu Eukaryota);4.75542881075839e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.8666385120066e-06!GO:0044440;endosomal part;6.07716975632892e-06!GO:0010008;endosome membrane;6.07716975632892e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.1126173330205e-06!GO:0050789;regulation of biological process;6.85443080186161e-06!GO:0009967;positive regulation of signal transduction;7.57249655478782e-06!GO:0005762;mitochondrial large ribosomal subunit;7.69931511616159e-06!GO:0000315;organellar large ribosomal subunit;7.69931511616159e-06!GO:0045259;proton-transporting ATP synthase complex;8.08592389201658e-06!GO:0065004;protein-DNA complex assembly;8.74977572756544e-06!GO:0016469;proton-transporting two-sector ATPase complex;8.99616948874405e-06!GO:0009108;coenzyme biosynthetic process;9.79059841556458e-06!GO:0003713;transcription coactivator activity;1.12156014120524e-05!GO:0051301;cell division;1.12156014120524e-05!GO:0005770;late endosome;1.69189170433776e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.85384184213154e-05!GO:0000279;M phase;1.8760434413343e-05!GO:0006613;cotranslational protein targeting to membrane;2.19088670771069e-05!GO:0009060;aerobic respiration;2.27782746109209e-05!GO:0019222;regulation of metabolic process;2.43433697126669e-05!GO:0019899;enzyme binding;2.45322735553758e-05!GO:0004298;threonine endopeptidase activity;2.45892272381365e-05!GO:0005815;microtubule organizing center;2.51144220442476e-05!GO:0045786;negative regulation of progression through cell cycle;2.598996883075e-05!GO:0009117;nucleotide metabolic process;2.73654474909596e-05!GO:0016740;transferase activity;2.7694553069099e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.22223550808605e-05!GO:0051168;nuclear export;3.634869961622e-05!GO:0016568;chromatin modification;3.9379642715969e-05!GO:0051427;hormone receptor binding;4.2775727561942e-05!GO:0005525;GTP binding;4.2775727561942e-05!GO:0000785;chromatin;4.2775727561942e-05!GO:0016310;phosphorylation;4.36211269716539e-05!GO:0000139;Golgi membrane;4.41860680128915e-05!GO:0009892;negative regulation of metabolic process;5.00861877254958e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.03887138391865e-05!GO:0006752;group transfer coenzyme metabolic process;5.19840576964027e-05!GO:0005798;Golgi-associated vesicle;7.5223552967559e-05!GO:0008033;tRNA processing;7.72703592423064e-05!GO:0035257;nuclear hormone receptor binding;8.90282893676914e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.41604676948097e-05!GO:0048471;perinuclear region of cytoplasm;9.44504493685183e-05!GO:0005769;early endosome;0.00010881529682922!GO:0043681;protein import into mitochondrion;0.000113167574846725!GO:0016481;negative regulation of transcription;0.000121433188528608!GO:0031988;membrane-bound vesicle;0.000145850804620932!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000152081987438848!GO:0006333;chromatin assembly or disassembly;0.000152081987438848!GO:0008186;RNA-dependent ATPase activity;0.000152752522828042!GO:0045941;positive regulation of transcription;0.000159921222218235!GO:0008654;phospholipid biosynthetic process;0.000164719719243175!GO:0043021;ribonucleoprotein binding;0.000169046751078677!GO:0044452;nucleolar part;0.000169046751078677!GO:0016023;cytoplasmic membrane-bound vesicle;0.000169608067147332!GO:0005788;endoplasmic reticulum lumen;0.000176066380913896!GO:0045333;cellular respiration;0.000183400850824241!GO:0005048;signal sequence binding;0.000192897486906938!GO:0000151;ubiquitin ligase complex;0.000195273575910631!GO:0000314;organellar small ribosomal subunit;0.00020577498741417!GO:0005763;mitochondrial small ribosomal subunit;0.00020577498741417!GO:0045454;cell redox homeostasis;0.000251870624902718!GO:0030867;rough endoplasmic reticulum membrane;0.000260461654283514!GO:0016197;endosome transport;0.000270087407505331!GO:0065009;regulation of a molecular function;0.000287010837055029!GO:0032561;guanyl ribonucleotide binding;0.000352053562409218!GO:0019001;guanyl nucleotide binding;0.000352053562409218!GO:0042802;identical protein binding;0.000361010327798802!GO:0045893;positive regulation of transcription, DNA-dependent;0.000370211568608768!GO:0031982;vesicle;0.000381103065469162!GO:0031252;leading edge;0.000395668117802818!GO:0030880;RNA polymerase complex;0.000402604290762379!GO:0006099;tricarboxylic acid cycle;0.000422850081718895!GO:0046356;acetyl-CoA catabolic process;0.000422850081718895!GO:0004004;ATP-dependent RNA helicase activity;0.000424322577600234!GO:0033116;ER-Golgi intermediate compartment membrane;0.000433157710317141!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000443434370897849!GO:0005819;spindle;0.000455444015564506!GO:0048518;positive regulation of biological process;0.000476486327636571!GO:0003729;mRNA binding;0.000501369922122162!GO:0006261;DNA-dependent DNA replication;0.000547860841510066!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000574813460194101!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000604921711136329!GO:0031410;cytoplasmic vesicle;0.000679327323526438!GO:0006084;acetyl-CoA metabolic process;0.000679327323526438!GO:0006626;protein targeting to mitochondrion;0.00071845775251276!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000828696815434774!GO:0008250;oligosaccharyl transferase complex;0.000854153599000518!GO:0006414;translational elongation;0.000866363083767813!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000899664662894045!GO:0000428;DNA-directed RNA polymerase complex;0.000899664662894045!GO:0006417;regulation of translation;0.000911828619591586!GO:0006352;transcription initiation;0.000912591343773423!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000993698532999144!GO:0031323;regulation of cellular metabolic process;0.00102782679745766!GO:0051789;response to protein stimulus;0.00105949150224935!GO:0006986;response to unfolded protein;0.00105949150224935!GO:0004576;oligosaccharyl transferase activity;0.00106213216552863!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00107075368096979!GO:0005905;coated pit;0.00110140064771006!GO:0030118;clathrin coat;0.00122970785909928!GO:0051329;interphase of mitotic cell cycle;0.00124607853271161!GO:0031072;heat shock protein binding;0.00124754603534817!GO:0046489;phosphoinositide biosynthetic process;0.00125277686555246!GO:0009109;coenzyme catabolic process;0.00128293374447441!GO:0007006;mitochondrial membrane organization and biogenesis;0.00132472890033517!GO:0006612;protein targeting to membrane;0.00135532923651977!GO:0016272;prefoldin complex;0.00135622142171748!GO:0003684;damaged DNA binding;0.00136564741298255!GO:0006402;mRNA catabolic process;0.00136777549783824!GO:0003690;double-stranded DNA binding;0.00141407382057404!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0014228563413522!GO:0005885;Arp2/3 protein complex;0.0014228563413522!GO:0005773;vacuole;0.00160352558553549!GO:0006839;mitochondrial transport;0.00162485846205326!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00168372167115579!GO:0046474;glycerophospholipid biosynthetic process;0.0017757188869165!GO:0065007;biological regulation;0.00188333355504032!GO:0051920;peroxiredoxin activity;0.00192125913792153!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00199780425762531!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00199780425762531!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00199780425762531!GO:0006891;intra-Golgi vesicle-mediated transport;0.00207677311714915!GO:0045892;negative regulation of transcription, DNA-dependent;0.00214989767496256!GO:0030119;AP-type membrane coat adaptor complex;0.00215807346249377!GO:0006350;transcription;0.00216098573703064!GO:0051187;cofactor catabolic process;0.00216756395376375!GO:0007264;small GTPase mediated signal transduction;0.00222832105728522!GO:0006401;RNA catabolic process;0.00224536251652277!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00229323129632716!GO:0051252;regulation of RNA metabolic process;0.00230906568744158!GO:0030658;transport vesicle membrane;0.00235443732273587!GO:0018196;peptidyl-asparagine modification;0.00248244703725997!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00248244703725997!GO:0030663;COPI coated vesicle membrane;0.00248268825167844!GO:0030126;COPI vesicle coat;0.00248268825167844!GO:0006405;RNA export from nucleus;0.00262531409960495!GO:0008139;nuclear localization sequence binding;0.00270325676444593!GO:0016363;nuclear matrix;0.00272306769424664!GO:0007088;regulation of mitosis;0.00273080822654331!GO:0003711;transcription elongation regulator activity;0.00275961814294118!GO:0048500;signal recognition particle;0.00296551512250962!GO:0030131;clathrin adaptor complex;0.00341712823688054!GO:0005684;U2-dependent spliceosome;0.00347629683589483!GO:0016044;membrane organization and biogenesis;0.00347629683589483!GO:0030137;COPI-coated vesicle;0.00347629683589483!GO:0051325;interphase;0.00353462129000286!GO:0019843;rRNA binding;0.00369892207407434!GO:0016311;dephosphorylation;0.00370280847521257!GO:0000049;tRNA binding;0.00371445584289877!GO:0006091;generation of precursor metabolites and energy;0.00380652169247817!GO:0030036;actin cytoskeleton organization and biogenesis;0.00382238292388342!GO:0008312;7S RNA binding;0.00383829746447684!GO:0004674;protein serine/threonine kinase activity;0.00386165508043774!GO:0033673;negative regulation of kinase activity;0.00390582427714102!GO:0006469;negative regulation of protein kinase activity;0.00390582427714102!GO:0001726;ruffle;0.00405793873763882!GO:0030176;integral to endoplasmic reticulum membrane;0.00422121743745246!GO:0006611;protein export from nucleus;0.00458091482371707!GO:0030132;clathrin coat of coated pit;0.00459282611335294!GO:0008243;plasminogen activator activity;0.00462629773421578!GO:0016859;cis-trans isomerase activity;0.00464068830969935!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00466098818946287!GO:0045045;secretory pathway;0.00466098818946287!GO:0000323;lytic vacuole;0.00480790991926192!GO:0005764;lysosome;0.00480790991926192!GO:0008632;apoptotic program;0.00481774877613137!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00481774877613137!GO:0004527;exonuclease activity;0.00482522605980494!GO:0008047;enzyme activator activity;0.00488646154796094!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0049081455307558!GO:0015399;primary active transmembrane transporter activity;0.0049081455307558!GO:0050790;regulation of catalytic activity;0.00499397412921929!GO:0016853;isomerase activity;0.00519224751947187!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00529609911352244!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00529609911352244!GO:0005669;transcription factor TFIID complex;0.00532526539793798!GO:0000075;cell cycle checkpoint;0.00544757767130676!GO:0031326;regulation of cellular biosynthetic process;0.00573560653125916!GO:0006383;transcription from RNA polymerase III promoter;0.00573560653125916!GO:0006368;RNA elongation from RNA polymerase II promoter;0.00573560653125916!GO:0009889;regulation of biosynthetic process;0.00603628276650853!GO:0046822;regulation of nucleocytoplasmic transport;0.00611294504627189!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00619852154468858!GO:0030660;Golgi-associated vesicle membrane;0.00628758558231055!GO:0007051;spindle organization and biogenesis;0.00632630499980714!GO:0051338;regulation of transferase activity;0.00640161297044!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00654443337928544!GO:0045047;protein targeting to ER;0.00654443337928544!GO:0051348;negative regulation of transferase activity;0.0066227671082548!GO:0007050;cell cycle arrest;0.00669730294018809!GO:0043022;ribosome binding;0.00706547711263491!GO:0031497;chromatin assembly;0.00706547711263491!GO:0035258;steroid hormone receptor binding;0.00708751228977482!GO:0006334;nucleosome assembly;0.00711385569770917!GO:0010468;regulation of gene expression;0.00720786206145064!GO:0004518;nuclease activity;0.00722906755355978!GO:0000059;protein import into nucleus, docking;0.00748672309411772!GO:0006509;membrane protein ectodomain proteolysis;0.00804494853575887!GO:0033619;membrane protein proteolysis;0.00804494853575887!GO:0004860;protein kinase inhibitor activity;0.00808264994082812!GO:0003746;translation elongation factor activity;0.00834111257486803!GO:0030659;cytoplasmic vesicle membrane;0.00859935583108478!GO:0009165;nucleotide biosynthetic process;0.00873949146457138!GO:0006302;double-strand break repair;0.00908848926400235!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00937228594311335!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00937598148337008!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00976988882392711!GO:0006354;RNA elongation;0.00996756020507537!GO:0030125;clathrin vesicle coat;0.0103030401659376!GO:0030665;clathrin coated vesicle membrane;0.0103030401659376!GO:0009893;positive regulation of metabolic process;0.0103365903729551!GO:0004721;phosphoprotein phosphatase activity;0.0103397110732421!GO:0016791;phosphoric monoester hydrolase activity;0.0103618151236278!GO:0005791;rough endoplasmic reticulum;0.0104586779539524!GO:0000082;G1/S transition of mitotic cell cycle;0.0105222558606071!GO:0030127;COPII vesicle coat;0.0107209326984036!GO:0012507;ER to Golgi transport vesicle membrane;0.0107209326984036!GO:0004532;exoribonuclease activity;0.0107398868674545!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.0107398868674545!GO:0043488;regulation of mRNA stability;0.0108118421217662!GO:0043487;regulation of RNA stability;0.0108118421217662!GO:0043549;regulation of kinase activity;0.0108316735779947!GO:0008637;apoptotic mitochondrial changes;0.010939569754196!GO:0006289;nucleotide-excision repair;0.0112031102151614!GO:0030134;ER to Golgi transport vesicle;0.0113824264015651!GO:0051052;regulation of DNA metabolic process;0.0113938145748275!GO:0006458;'de novo' protein folding;0.0114173350721502!GO:0051084;'de novo' posttranslational protein folding;0.0114173350721502!GO:0048144;fibroblast proliferation;0.0114239784410853!GO:0048145;regulation of fibroblast proliferation;0.0114239784410853!GO:0032200;telomere organization and biogenesis;0.0115376463903531!GO:0000723;telomere maintenance;0.0115376463903531!GO:0030133;transport vesicle;0.0118482106539288!GO:0007242;intracellular signaling cascade;0.0119364637312844!GO:0009112;nucleobase metabolic process;0.0121398683778323!GO:0006520;amino acid metabolic process;0.0122422892545177!GO:0006595;polyamine metabolic process;0.0123638462559322!GO:0046966;thyroid hormone receptor binding;0.0125153646594919!GO:0001836;release of cytochrome c from mitochondria;0.0128002226985072!GO:0005874;microtubule;0.0131199327660977!GO:0006984;ER-nuclear signaling pathway;0.0132490826965844!GO:0016251;general RNA polymerase II transcription factor activity;0.0132490826965844!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0132569546209017!GO:0051059;NF-kappaB binding;0.0133276306261169!GO:0006892;post-Golgi vesicle-mediated transport;0.0136625167470054!GO:0045936;negative regulation of phosphate metabolic process;0.0139140652848795!GO:0005149;interleukin-1 receptor binding;0.0139140652848795!GO:0031529;ruffle organization and biogenesis;0.0142021960497451!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0142483001495091!GO:0015002;heme-copper terminal oxidase activity;0.0142483001495091!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0142483001495091!GO:0004129;cytochrome-c oxidase activity;0.0142483001495091!GO:0005637;nuclear inner membrane;0.0142647850745905!GO:0051087;chaperone binding;0.0143072627520468!GO:0009966;regulation of signal transduction;0.0143441950127571!GO:0051540;metal cluster binding;0.0143441950127571!GO:0051536;iron-sulfur cluster binding;0.0143441950127571!GO:0030029;actin filament-based process;0.0143501580733269!GO:0043189;H4/H2A histone acetyltransferase complex;0.0144126911829355!GO:0006506;GPI anchor biosynthetic process;0.0145594151428801!GO:0044433;cytoplasmic vesicle part;0.0145942835127472!GO:0048146;positive regulation of fibroblast proliferation;0.0146353533528599!GO:0007010;cytoskeleton organization and biogenesis;0.0146353533528599!GO:0048468;cell development;0.0149563603543884!GO:0005832;chaperonin-containing T-complex;0.0149565475066199!GO:0045859;regulation of protein kinase activity;0.0155213121914551!GO:0031902;late endosome membrane;0.0155213121914551!GO:0008287;protein serine/threonine phosphatase complex;0.0156821745308321!GO:0046426;negative regulation of JAK-STAT cascade;0.0157303927333377!GO:0048487;beta-tubulin binding;0.0158843327571498!GO:0008538;proteasome activator activity;0.0163836146347!GO:0006497;protein amino acid lipidation;0.0165400611488949!GO:0043624;cellular protein complex disassembly;0.01655860004621!GO:0006376;mRNA splice site selection;0.0168623270532408!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0168623270532408!GO:0031968;organelle outer membrane;0.0171188939609297!GO:0031124;mRNA 3'-end processing;0.0171290375707881!GO:0032508;DNA duplex unwinding;0.0171696480075026!GO:0032392;DNA geometric change;0.0171696480075026!GO:0003682;chromatin binding;0.0171696480075026!GO:0000178;exosome (RNase complex);0.0171696480075026!GO:0022890;inorganic cation transmembrane transporter activity;0.0171696480075026!GO:0008234;cysteine-type peptidase activity;0.0171696480075026!GO:0043492;ATPase activity, coupled to movement of substances;0.0175124435015771!GO:0019867;outer membrane;0.0175152987236487!GO:0006650;glycerophospholipid metabolic process;0.0175197006446632!GO:0030032;lamellipodium biogenesis;0.0178603224296163!GO:0043065;positive regulation of apoptosis;0.0185467910947791!GO:0030384;phosphoinositide metabolic process;0.0193298506340826!GO:0031325;positive regulation of cellular metabolic process;0.0194983998044062!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0194983998044062!GO:0031901;early endosome membrane;0.0194997902236272!GO:0022406;membrane docking;0.0195617591334953!GO:0048278;vesicle docking;0.0195617591334953!GO:0016584;nucleosome positioning;0.0195666061974604!GO:0035267;NuA4 histone acetyltransferase complex;0.019638355853359!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0199637976372245!GO:0006818;hydrogen transport;0.0199666935861072!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0200747719184793!GO:0006505;GPI anchor metabolic process;0.0202151797003238!GO:0030521;androgen receptor signaling pathway;0.0202151797003238!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0202383646274797!GO:0017166;vinculin binding;0.0205201458381658!GO:0012506;vesicle membrane;0.0206943301305816!GO:0006470;protein amino acid dephosphorylation;0.0208800962833337!GO:0046983;protein dimerization activity;0.0211680998444935!GO:0043068;positive regulation of programmed cell death;0.0214742304862956!GO:0016491;oxidoreductase activity;0.0221086268397519!GO:0007093;mitotic cell cycle checkpoint;0.0226175613919532!GO:0008361;regulation of cell size;0.0228036088361897!GO:0045603;positive regulation of endothelial cell differentiation;0.0231807888529419!GO:0000123;histone acetyltransferase complex;0.0231952613073023!GO:0015631;tubulin binding;0.0234186060868534!GO:0004680;casein kinase activity;0.0239664028010845!GO:0000096;sulfur amino acid metabolic process;0.0241490009465959!GO:0042326;negative regulation of phosphorylation;0.0252366430620224!GO:0060166;olfactory pit development;0.0252933681196205!GO:0021768;nucleus accumbens development;0.0252933681196205!GO:0002072;optic cup morphogenesis involved in camera-type eye development;0.0252933681196205!GO:0005100;Rho GTPase activator activity;0.0255159757761393!GO:0015980;energy derivation by oxidation of organic compounds;0.0261372076942046!GO:0005741;mitochondrial outer membrane;0.0262471772350569!GO:0006275;regulation of DNA replication;0.0262751991486073!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0262897259562854!GO:0015992;proton transport;0.0262897259562854!GO:0030031;cell projection biogenesis;0.0269410971719953!GO:0046483;heterocycle metabolic process;0.0269951981591667!GO:0046467;membrane lipid biosynthetic process;0.0271140830761579!GO:0051085;chaperone cofactor-dependent protein folding;0.0273323588365202!GO:0045947;negative regulation of translational initiation;0.0274143130106066!GO:0008601;protein phosphatase type 2A regulator activity;0.0274680915760686!GO:0016485;protein processing;0.0278231521915705!GO:0009116;nucleoside metabolic process;0.02873705084651!GO:0005096;GTPase activator activity;0.0287651453550633!GO:0005657;replication fork;0.029384865160275!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0294550148169079!GO:0000781;chromosome, telomeric region;0.0295402301431843!GO:0005869;dynactin complex;0.0296815474914152!GO:0007041;lysosomal transport;0.0298178998377341!GO:0051101;regulation of DNA binding;0.0299976414718958!GO:0022415;viral reproductive process;0.0300570297158418!GO:0006950;response to stress;0.0303732721992976!GO:0032984;macromolecular complex disassembly;0.0305185627920113!GO:0045792;negative regulation of cell size;0.0308764671695662!GO:0006904;vesicle docking during exocytosis;0.0308956531671064!GO:0006144;purine base metabolic process;0.0309785849976241!GO:0005856;cytoskeleton;0.0310128083247414!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0314085520580367!GO:0045039;protein import into mitochondrial inner membrane;0.0314085520580367!GO:0019210;kinase inhibitor activity;0.0314534638221464!GO:0050681;androgen receptor binding;0.0321101850725224!GO:0032774;RNA biosynthetic process;0.0326155673567975!GO:0003702;RNA polymerase II transcription factor activity;0.0326155673567975!GO:0008333;endosome to lysosome transport;0.0327077351765448!GO:0000209;protein polyubiquitination;0.0327901576011721!GO:0006607;NLS-bearing substrate import into nucleus;0.0328611753681028!GO:0047485;protein N-terminus binding;0.033342189875352!GO:0019904;protein domain specific binding;0.0335940123291167!GO:0003678;DNA helicase activity;0.0336927484736942!GO:0018193;peptidyl-amino acid modification;0.0339864675047659!GO:0000339;RNA cap binding;0.0339864675047659!GO:0030308;negative regulation of cell growth;0.0341532536732943!GO:0009303;rRNA transcription;0.0351577279343098!GO:0030833;regulation of actin filament polymerization;0.0352429014027928!GO:0007034;vacuolar transport;0.0356083489102792!GO:0051539;4 iron, 4 sulfur cluster binding;0.0362110287858953!GO:0000159;protein phosphatase type 2A complex;0.0362764357644286!GO:0006351;transcription, DNA-dependent;0.0362764357644286!GO:0043433;negative regulation of transcription factor activity;0.0362764357644286!GO:0031371;ubiquitin conjugating enzyme complex;0.0364392598946806!GO:0043284;biopolymer biosynthetic process;0.0364697421788879!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0365103349019226!GO:0010257;NADH dehydrogenase complex assembly;0.0365103349019226!GO:0033108;mitochondrial respiratory chain complex assembly;0.0365103349019226!GO:0009451;RNA modification;0.0365940278194084!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0369355602358946!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0369355602358946!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0369355602358946!GO:0006378;mRNA polyadenylation;0.0372573625811569!GO:0008180;signalosome;0.0377221005259667!GO:0004722;protein serine/threonine phosphatase activity;0.0377826011958315!GO:0016741;transferase activity, transferring one-carbon groups;0.0385943968215677!GO:0016049;cell growth;0.0387109621813989!GO:0001558;regulation of cell growth;0.0387109621813989!GO:0030911;TPR domain binding;0.0388925686680816!GO:0008408;3'-5' exonuclease activity;0.0390392321646244!GO:0008168;methyltransferase activity;0.0390392321646244!GO:0043241;protein complex disassembly;0.0392051510284756!GO:0007004;telomere maintenance via telomerase;0.0392051510284756!GO:0032507;maintenance of cellular protein localization;0.0392051510284756!GO:0042158;lipoprotein biosynthetic process;0.0392360330250734!GO:0005784;translocon complex;0.0392915904621002!GO:0006268;DNA unwinding during replication;0.0400055900450878!GO:0045926;negative regulation of growth;0.0405311551247271!GO:0000775;chromosome, pericentric region;0.0409502446862744!GO:0017134;fibroblast growth factor binding;0.0409855323777433!GO:0007033;vacuole organization and biogenesis;0.0428566251585383!GO:0000118;histone deacetylase complex;0.0430111055808017!GO:0035035;histone acetyltransferase binding;0.0432401846733256!GO:0007030;Golgi organization and biogenesis;0.0435219051314232!GO:0032940;secretion by cell;0.0436977544215885!GO:0007040;lysosome organization and biogenesis;0.0442760315793976!GO:0007265;Ras protein signal transduction;0.0443167062194943!GO:0031123;RNA 3'-end processing;0.0443391435253272!GO:0042769;DNA damage response, detection of DNA damage;0.0453546061860355!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0453546061860355!GO:0040029;regulation of gene expression, epigenetic;0.0453546061860355!GO:0031575;G1/S transition checkpoint;0.0455782437201215!GO:0004177;aminopeptidase activity;0.0456511649394551!GO:0008097;5S rRNA binding;0.0457137863652319!GO:0008426;protein kinase C inhibitor activity;0.0460073815672338!GO:0006360;transcription from RNA polymerase I promoter;0.0461745542225594!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0465160133411465!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0465160133411465!GO:0008022;protein C-terminus binding;0.0478823703491845!GO:0043154;negative regulation of caspase activity;0.0479316270497255!GO:0006740;NADPH regeneration;0.0481104164515759!GO:0006098;pentose-phosphate shunt;0.0481104164515759!GO:0004850;uridine phosphorylase activity;0.0481444807991347!GO:0005083;small GTPase regulator activity;0.0481444807991347!GO:0008537;proteasome activator complex;0.0481763336724034!GO:0051098;regulation of binding;0.048184149677212!GO:0000175;3'-5'-exoribonuclease activity;0.0494942761283904!GO:0008092;cytoskeletal protein binding;0.0496161052517519!GO:0000776;kinetochore;0.0497714419494981
|sample_id=10616
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=thyroid
|top_motifs=ELK1,4_GABP{A,B1}:2.20699747775;TP53:1.64690689655;POU1F1:1.51214667929;ZEB1:1.3937975203;POU2F1..3:1.3313972956;bHLH_family:1.16923940776;VSX1,2:1.03627752038;SNAI1..3:1.00694729207;ONECUT1,2:1.0068024684;TBX4,5:0.98830854121;BACH2:0.906408023434;ARID5B:0.890436894487;TEF:0.867396002379;TLX2:0.852685414825;FOSL2:0.834576024737;FOXQ1:0.815283922985;GLI1..3:0.796792583696;FOS_FOS{B,L1}_JUN{B,D}:0.775603246037;MYOD1:0.754732347822;PPARG:0.741005526116;ELF1,2,4:0.650800929978;POU6F1:0.593314014355;FOXD3:0.547828380745;ADNP_IRX_SIX_ZHX:0.523979442044;POU3F1..4:0.516440455831;HLF:0.467374322651;NFE2:0.465831631254;SOX17:0.462351674904;IKZF1:0.444294961848;ZBTB6:0.437364186017;TEAD1:0.428411357327;NKX2-1,4:0.417154116209;FOXM1:0.401205275667;HOXA9_MEIS1:0.399076222244;TBP:0.362016135754;HOX{A6,A7,B6,B7}:0.347953635309;PITX1..3:0.345542291976;LEF1_TCF7_TCF7L1,2:0.342138612558;FOXN1:0.319522074682;RBPJ:0.306087779687;HOX{A4,D4}:0.258786365974;OCT4_SOX2{dimer}:0.204972078323;NANOG:0.197451266859;NKX3-1:0.196268199665;NKX3-2:0.193916633732;PAX2:0.191059645706;ZBTB16:0.165239440408;ALX1:0.162223496661;LMO2:0.127023136019;GFI1:0.106085404479;PDX1:0.104736224694;TFDP1:0.0890169554498;NFIX:0.0865751720597;STAT5{A,B}:0.0860859160913;ATF4:0.0751152990267;PAX1,9:0.070735850862;ZNF143:0.0677370820329;ATF5_CREB3:0.0568815228559;FOX{F1,F2,J1}:0.0554853737149;HES1:0.0477668763483;IRF7:0.0390697745766;PRDM1:0.0349445901041;SPZ1:0.0341057989097;NFKB1_REL_RELA:0.0108199514261;GZF1:0.00172625731213;CRX:-0.00327923785429;AIRE:-0.00526347873271;AR:-0.00709413732587;CEBPA,B_DDIT3:-0.0155953317827;TFAP2{A,C}:-0.0164717589512;CDC5L:-0.039870736456;GTF2A1,2:-0.0659185948281;FOXA2:-0.0760936636707;ZNF148:-0.0823514925837;T:-0.0847885670641;CREB1:-0.0877646710835;NFIL3:-0.103804373331;ATF2:-0.116718830473;GATA6:-0.130188155028;AHR_ARNT_ARNT2:-0.139828582475;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.140462926885;SMAD1..7,9:-0.141078706786;PAX8:-0.143820581616;EN1,2:-0.144020863817;PAX4:-0.147931007804;TLX1..3_NFIC{dimer}:-0.159190221946;ATF6:-0.165240031047;REST:-0.168339711222;ETS1,2:-0.173761113614;GFI1B:-0.177450972997;MTF1:-0.180030587416;TFCP2:-0.180432096119;YY1:-0.227184053207;XCPE1{core}:-0.270059076654;FOXP1:-0.273640878882;NR1H4:-0.274500790996;UFEwm:-0.276183910742;CDX1,2,4:-0.277727261441;RFX2..5_RFXANK_RFXAP:-0.283073895326;SPI1:-0.287070677963;NFY{A,B,C}:-0.287575742421;HNF1A:-0.288850682003;DMAP1_NCOR{1,2}_SMARC:-0.302768302244;FOX{D1,D2}:-0.306312936222;FOX{I1,J2}:-0.330916788912;HIC1:-0.334404059626;NR6A1:-0.336077199773;NHLH1,2:-0.343797343235;ZFP161:-0.348303270891;MYBL2:-0.357858522228;MED-1{core}:-0.368096449745;RFX1:-0.375797884352;ZIC1..3:-0.381599444697;PRRX1,2:-0.389014732211;SP1:-0.393380866504;TOPORS:-0.40034252857;MEF2{A,B,C,D}:-0.402513421254;E2F1..5:-0.40898966897;SPIB:-0.424408344657;HOX{A5,B5}:-0.432115969847;SOX{8,9,10}:-0.434014419407;IRF1,2:-0.435253618494;KLF4:-0.454950261388;EP300:-0.471029584882;NFE2L2:-0.475849714813;XBP1:-0.488116551441;MYB:-0.49328612538;JUN:-0.506663730196;NRF1:-0.5104834559;SRF:-0.511349755147;LHX3,4:-0.524349675333;EGR1..3:-0.537542864007;NKX2-2,8:-0.539616288777;NKX2-3_NKX2-5:-0.54084244149;MTE{core}:-0.548816687959;TFAP2B:-0.584919409379;PAX6:-0.601846431291;ZNF423:-0.602879224337;TFAP4:-0.621902720699;SOX2:-0.622273928688;BPTF:-0.623050907503;HNF4A_NR2F1,2:-0.627649150688;GTF2I:-0.645545986713;PBX1:-0.647241173534;EVI1:-0.657698210348;CUX2:-0.661619275701;RORA:-0.663096765488;ESR1:-0.67211617827;BREu{core}:-0.680342647361;PAX5:-0.691741315441;FOXL1:-0.694615499685;HBP1_HMGB_SSRP1_UBTF:-0.698234781805;POU5F1:-0.700780254215;HAND1,2:-0.70849225329;HIF1A:-0.715262522038;MAFB:-0.718086421628;STAT2,4,6:-0.736022693726;FOXO1,3,4:-0.778720975387;RXR{A,B,G}:-0.780287298299;PAX3,7:-0.783224689557;MYFfamily:-0.785537609176;TAL1_TCF{3,4,12}:-0.788858735175;DBP:-0.826869825777;RUNX1..3:-0.831945183179;GCM1,2:-0.843929309452;NFATC1..3:-0.855842162468;SREBF1,2:-0.865961148587;MAZ:-0.907761457793;HMGA1,2:-0.935177156742;NR3C1:-0.943628756756;ZNF384:-0.975768954968;IKZF2:-0.984229707559;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.991059119653;NKX6-1,2:-1.009375593;NR5A1,2:-1.03510866895;TGIF1:-1.04520899516;ALX4:-1.08902631381;PATZ1:-1.12125727086;STAT1,3:-1.13003903238;EBF1:-1.19016849318;HSF1,2:-1.19414273825;RREB1:-1.22831493838;SOX5:-1.27099482947;ZNF238:-1.28042972054;NFE2L1:-1.3151860105;GATA4:-1.32146343781;RXRA_VDR{dimer}:-1.39731661232;NANOG{mouse}:-1.46759813414;HMX1:-1.5174585526;MZF1:-1.52139571826;ESRRA:-1.65567376086;FOXP3:-1.81382814498
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10616-108G4;search_select_hide=table117:FF:10616-108G4
}}
}}

Latest revision as of 14:31, 3 June 2020

Name:squamous cell carcinoma cell line:T3M-5
Species:Human (Homo sapiens)
Library ID:CNhs11739
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuethyroid
dev stageNA
sexfemale
age71
cell typeunclassifiable
cell lineT3M-5
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005203
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11739 CAGE DRX008016 DRR008888
Accession ID Hg19

Library idBAMCTSS
CNhs11739 DRZ000313 DRZ001698
Accession ID Hg38

Library idBAMCTSS
CNhs11739 DRZ011663 DRZ013048
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0341
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0248
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid1.194
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0829
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0362
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.774
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0247
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.232
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.232
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0398
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.131
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.314
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11739

Jaspar motifP-value
MA0002.20.571
MA0003.10.761
MA0004.10.321
MA0006.10.183
MA0007.10.394
MA0009.10.292
MA0014.10.0509
MA0017.10.667
MA0018.20.779
MA0019.10.406
MA0024.10.00591
MA0025.10.83
MA0027.10.899
MA0028.16.92274e-14
MA0029.10.167
MA0030.10.607
MA0031.10.702
MA0035.20.0511
MA0038.10.184
MA0039.20.0281
MA0040.10.59
MA0041.10.606
MA0042.10.551
MA0043.10.812
MA0046.10.128
MA0047.20.643
MA0048.10.477
MA0050.10.699
MA0051.10.289
MA0052.10.507
MA0055.10.00418
MA0057.10.18
MA0058.10.565
MA0059.10.0172
MA0060.10.153
MA0061.10.957
MA0062.25.73817e-19
MA0065.20.456
MA0066.10.795
MA0067.10.193
MA0068.10.464
MA0069.10.172
MA0070.10.481
MA0071.10.12
MA0072.10.984
MA0073.10.978
MA0074.10.535
MA0076.11.62074e-14
MA0077.10.3
MA0078.10.837
MA0079.20.792
MA0080.20.0253
MA0081.10.959
MA0083.10.702
MA0084.10.439
MA0087.10.0567
MA0088.10.0156
MA0090.10.01
MA0091.10.0716
MA0092.10.538
MA0093.10.246
MA0099.22.91381e-30
MA0100.10.284
MA0101.10.472
MA0102.20.528
MA0103.15.33524e-7
MA0104.20.179
MA0105.10.378
MA0106.15.07306e-10
MA0107.10.819
MA0108.20.153
MA0111.10.502
MA0112.20.45
MA0113.10.2
MA0114.10.847
MA0115.10.824
MA0116.10.059
MA0117.10.425
MA0119.10.183
MA0122.10.982
MA0124.10.212
MA0125.10.194
MA0131.10.878
MA0135.10.754
MA0136.10.00778
MA0137.20.242
MA0138.20.0427
MA0139.10.0406
MA0140.10.193
MA0141.10.325
MA0142.10.522
MA0143.10.799
MA0144.10.68
MA0145.10.0319
MA0146.10.371
MA0147.10.052
MA0148.10.086
MA0149.10.0671
MA0150.10.0156
MA0152.10.282
MA0153.10.84
MA0154.10.479
MA0155.10.186
MA0156.13.0494e-6
MA0157.10.66
MA0159.10.0105
MA0160.10.534
MA0162.10.766
MA0163.10.042
MA0164.10.57
MA0258.10.355
MA0259.10.513



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11739

Novel motifP-value
10.287
100.326
1000.925
1010.27
1020.492
1030.166
1040.558
1050.826
1060.0178
1070.00122
1080.247
1090.0085
110.599
1100.116
1110.481
1120.563
1130.0833
1140.456
1150.905
1160.246
1170.056
1180.957
1190.538
120.742
1200.281
1210.581
1220.61
1230.839
1240.089
1250.827
1260.233
1270.658
1280.418
1290.0628
130.0554
1300.956
1310.831
1320.782
1330.758
1340.0437
1350.0323
1360.0316
1370.455
1380.117
1390.448
140.999
1400.227
1410.774
1420.628
1430.764
1440.543
1450.271
1460.795
1470.558
1480.714
1490.961
150.435
1500.588
1510.301
1520.128
1530.898
1540.642
1550.767
1560.433
1570.856
1580.685
1590.482
160.0296
1600.696
1610.308
1620.455
1630.538
1640.604
1650.284
1660.142
1670.36
1680.801
1690.0475
170.119
180.157
190.982
20.851
200.257
210.903
220.815
230.502
240.197
250.786
260.206
270.71
280.0801
290.421
30.179
300.392
310.854
320.224
330.0212
340.128
350.397
360.0362
370.224
380.181
390.698
40.538
400.196
410.153
420.154
430.694
440.896
450.378
460.0907
470.265
480.24
490.71
50.349
500.416
510.905
520.874
530.452
540.445
550.0245
560.444
570.0319
580.886
590.848
60.95
600.257
610.607
620.815
630.126
640.948
650.358
660.00476
670.396
680.124
690.951
70.933
700.019
710.136
720.736
730.0294
740.817
750.0322
760.278
770.592
780.0283
790.107
80.279
800.611
810.7
820.647
830.485
840.604
850.969
860.277
870.00335
880.915
890.332
90.366
900.253
910.234
920.49
930.403
940.765
950.251
960.293
970.221
980.967
990.652



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11739


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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