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{{f5samples
{{f5samples
|id=FF:10732-110B3
|DRA_sample_Accession=CAGE@SAMD00005548
|name=pagetoid sarcoma cell line:Hs 925.T
|accession_numbers=CAGE;DRX007979;DRR008851;DRZ000276;DRZ001661;DRZ011626;DRZ013011
|sample_id=10732
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_tube_id=110B3
|rna_box=110
|rna_position=B3
|sample_cell_lot=
|sample_cell_catalog=CRL-7677
|sample_company=ATCC
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=skin
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=58
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=2.01
|rna_od260/280=2.07
|sample_cell_type=unclassifiable
|sample_cell_line=Hs 925.T
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=pagetoid sarcoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=50.42019
|rna_concentration=1.07277
|sample_note=
|profile_hcage=CNhs11856,LSID830,release010,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000479,UBERON:0001062,UBERON:0002384
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:1115
|ancestors_in_disease_facet=DOID:0050687,DOID:1115,DOID:14566,DOID:162,DOID:4
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100400
|sample_description=
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.77!57.69!PAX8;;chr12:66218255..66218304,+!p3@HMGA2!1.54!88.35!HMGA2;;chr19:9609272..9609297,-!p1@ZNF560!1.35!21.38!ZNF560;;chr11:46299199..46299233,+!p1@CREB3L1!1.28!91.17!CREB3L1;;chr7:28448965..28448994,+!p2@CREB5!1.25!57.89!CREB5;;chr6:45390025..45390076,+!p2@RUNX2!1.24!38.93!RUNX2;;chr6:45390300..45390335,+!p4@RUNX2!1.23!24.81!RUNX2;;chr8:67525443..67525459,-!p2@MYBL1!1.22!23.40!MYBL1;;chr17:46703687..46703740,-!p1@HOXB9!1.17!13.92!HOXB9;;chr2:200322654..200322707,-!p2@SATB2!1.16!19.36!SATB2;;chr1:44513995..44514031,+!p1@KLF17!1.16!13.31!KLF17;;chr3:69811882..69811898,+!p6@MITF!1.10!11.70!MITF;;chr6:45390002..45390023,+!p6@RUNX2!1.09!19.77!RUNX2;;chr3:69811858..69811881,+!p5@MITF!1.08!11.09!MITF;;chr20:50179368..50179392,-!p2@NFATC2!1.06!13.72!NFATC2;;chr6:45390077..45390105,+!p9@RUNX2!1.06!13.51!RUNX2;;chr12:66218212..66218244,+!p5@HMGA2!1.04!14.72!HMGA2;;chr6:28321909..28321965,-!p3@ZNF323!1.04!10.09!ZNF323;;chr7:19157043..19157088,-!p2@TWIST1!1.01!23.40!TWIST1;;chr8:23540441..23540466,-!p1@NKX3-1!1.01!18.96!NKX3-1;;chr5:72744445..72744466,-!p2@FOXD1!1.01!15.53!FOXD1;;chr6:45390269..45390298,+!p5@RUNX2!1.01!15.33!RUNX2;;chr12:54380404..54380433,+!p3@HOXC10!1.01!9.28!HOXC10;;chr12:80085061..80085119,-!p6@PAWR!0.98!13.72!PAWR;;chr14:62162285..62162296,+!p3@HIF1A!0.97!44.98!HIF1A;;chr12:26277817..26277863,-!p2@BHLHE41!0.97!11.50!BHLHE41;;chr7:27169801..27169844,-!p2@HOXA4!0.96!8.07!HOXA4;;chr9:16705069..16705086,-!p3@BNC2!0.96!8.07!BNC2;;chr8:49833948..49833973,-!p2@SNAI2!0.95!52.24!SNAI2;;chr11:65686802..65686818,+!p6@DRAP1!0.95!14.12!DRAP1;;chr17:46622229..46622257,-!p6@HOXB2!0.95!9.28!HOXB2;;chr8:49833978..49833996,-!p1@SNAI2!0.94!164.59!SNAI2;;chr12:80084303..80084332,-!p1@PAWR!0.94!47.40!PAWR;;chr19:22817119..22817145,+!p1@ZNF492!0.93!12.71!ZNF492;;chr20:55204351..55204377,+!p1@TFAP2C!0.93!9.68!TFAP2C;;chr6:45390399..45390418,+!p15@RUNX2!0.93!7.46!RUNX2;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.91!7.66!GLIS1;;chr12:26277956..26277980,-!p1@BHLHE41!0.90!26.22!BHLHE41;;chr15:83953397..83953425,-!p1@BNC1!0.90!8.07!BNC1;;chr6:28321971..28321995,-!p1@ZNF323!0.90!6.86!ZNF323;;chr8:67525473..67525518,-!p1@MYBL1!0.88!15.53!MYBL1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.87!59.50!PPP1R13L;;chr12:66218598..66218645,+!p2@HMGA2!0.87!31.06!HMGA2;;chr12:80084737..80084763,-!p3@PAWR!0.87!25.01!PAWR;;chr12:54447599..54447630,+!p3@HOXC4!0.87!8.07!HOXC4;;chr17:38020392..38020477,-!p1@IKZF3!0.86!6.25!IKZF3;;chr14:62162258..62162269,+!p2@HIF1A!0.85!61.92!HIF1A;;chr11:65686732..65686756,+!p2@DRAP1!0.85!27.03!DRAP1;;chr5:137804405..137804444,+!p3@EGR1!0.85!7.46!EGR1;;chr7:96654026..96654061,-!p2@DLX5!0.85!6.05!DLX5;;chr5:158526917..158526932,-!p1@EBF1!0.84!15.33!EBF1;;chr19:22193731..22193751,-!p1@ZNF208!0.84!5.85!ZNF208;;chr7:28725740..28725778,+!p1@CREB5!0.83!55.27!CREB5;;chr5:72744594..72744609,-!p1@FOXD1!0.82!27.63!FOXD1;;chr7:27205106..27205134,-!p2@HOXA9!0.82!5.65!HOXA9;;chr7:96654133..96654150,-!p1@DLX5!0.82!5.65!DLX5;;chr19:22605136..22605154,-!p1@ZNF98!0.82!5.65!ZNF98;;chr2:10183651..10183713,+!p1@KLF11!0.81!42.96!KLF11;;chr6:10412600..10412637,-!p1@TFAP2A!0.81!9.48!TFAP2A;;chr12:66218378..66218401,+!p6@HMGA2!0.81!8.67!HMGA2;;chr3:71630980..71631110,-!p3@FOXP1!0.80!19.97!FOXP1;;chr2:102091566..102091581,-!p1@RFX8!0.80!5.24!RFX8;;chr1:119530493..119530572,-!p1@TBX15!0.80!5.24!TBX15;;chr17:35294075..35294102,+!p1@ENST00000559335!0.80!5.24!LHX1;;chr20:39317868..39317884,-!p1@MAFB!0.79!67.37!MAFB;;chr11:46299539..46299620,+!p2@CREB3L1!0.79!9.08!CREB3L1;;chr5:72743793..72743855,-!p4@FOXD1!0.78!6.05!FOXD1;;chr12:54380036..54380091,+!p4@HOXC10!0.78!5.04!HOXC10;;chr1:25291475..25291511,-!p2@RUNX3!0.78!5.04!RUNX3;;chr2:176994408..176994492,+!p1@HOXD8!0.78!5.04!HOXD8;;chr17:45928443..45928473,-!p2@SP6!0.78!5.04!SP6;;chr1:40105299..40105326,-!p1@HEYL!0.77!4.84!HEYL;;chr12:26277929..26277955,-!p3@BHLHE41!0.76!7.06!BHLHE41;;chr9:4300050..4300118,-!p1@GLIS3!0.75!33.28!GLIS3;;chr20:42543441..42543497,+!p1@TOX2!0.75!22.79!TOX2;;chr14:61116183..61116208,-!p1@SIX1!0.75!19.36!SIX1;;chr12:80084279..80084293,-!p8@PAWR!0.75!8.07!PAWR;;chr8:40755333..40755352,-!p1@ZMAT4!0.75!4.64!ZMAT4;;chr2:28615716..28615733,+!p1@FOSL2!0.74!240.23!FOSL2;;chr2:176973498..176973524,+!p1@HOXD10!0.74!4.44!HOXD10;;chr5:2751762..2751784,-!p1@IRX2!0.74!4.44!IRX2;;chr12:80084167..80084197,-!p5@PAWR!0.73!11.09!PAWR;;chr3:141087144..141087170,+!p11@ZBTB38!0.73!5.65!ZBTB38;;chr14:62203595..62203676,+!p4@HIF1A!0.72!8.47!HIF1A;;chr3:25469724..25469773,+!p1@RARB!0.72!6.45!RARB;;chr3:157823517..157823562,-!p1@SHOX2!0.72!4.64!SHOX2;;chr17:46703942..46703964,-!p4@HOXB9!0.72!4.24!HOXB9;;chr12:80085120..80085156,-!p14@PAWR!0.72!4.24!PAWR;;chr19:47523058..47523114,+!p1@NPAS1!0.72!4.24!NPAS1;;chr20:42295745..42295765,+!p1@MYBL2!0.71!77.05!MYBL2;;chr16:54320675..54320715,-!p1@IRX3!0.71!9.68!IRX3;;chr12:66218183..66218209,+!p4@HMGA2!0.71!8.47!HMGA2;;chr15:80696703..80696754,+!p1@ARNT2!0.71!5.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|fonse_cell_line=FF:0100400
|fonse_cell_line=FF:0100400
|fonse_cell_line_closure=FF:0100400
|fonse_cell_line_closure=FF:0100400
Line 66: Line 39:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
|created_by=
|creation_date=
|def=
|has_quality=
|has_quality=
|is_a=EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100400
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/pagetoid%2520sarcoma%2520cell%2520line%253aHs%2520925%252eT.CNhs11856.10732-110B3.hg38.nobarcode.ctss.bed.gz
|id=FF:10732-110B3
|is_a=EFO:0002091;;FF:0000210;;FF:0100400
|is_obsolete=
|library_id=CNhs11856
|library_id_phase_based=2:CNhs11856
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10732
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10732
|name=pagetoid sarcoma cell line:Hs 925.T
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11856,LSID830,release010,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=110
|rna_catalog_number=
|rna_concentration=1.07277
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.01
|rna_od260/280=2.07
|rna_position=B3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=110B3
|rna_weight_ug=50.42019
|sample_age=58
|sample_category=cell lines
|sample_cell_catalog=CRL-7677
|sample_cell_line=Hs 925.T
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=ATCC
|sample_description=
|sample_dev_stage=
|sample_disease=pagetoid sarcoma
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.22220384307556e-265!GO:0043226;organelle;1.11169065623466e-222!GO:0043229;intracellular organelle;5.54798647236389e-222!GO:0043231;intracellular membrane-bound organelle;7.62452044920788e-220!GO:0043227;membrane-bound organelle;7.62452044920788e-220!GO:0005737;cytoplasm;1.10971231723112e-183!GO:0044422;organelle part;7.75795873909116e-152!GO:0044446;intracellular organelle part;3.9131087063087e-150!GO:0044444;cytoplasmic part;9.64580384908776e-129!GO:0032991;macromolecular complex;1.59327185743627e-101!GO:0005634;nucleus;5.0989893666411e-97!GO:0044237;cellular metabolic process;3.18946936039433e-96!GO:0044238;primary metabolic process;5.03580852315809e-96!GO:0043170;macromolecule metabolic process;8.76485627626513e-96!GO:0030529;ribonucleoprotein complex;1.40833171871113e-87!GO:0043233;organelle lumen;2.67239803438616e-79!GO:0031974;membrane-enclosed lumen;2.67239803438616e-79!GO:0044428;nuclear part;2.94633421893769e-79!GO:0005515;protein binding;3.67332525407536e-78!GO:0003723;RNA binding;2.45868789084525e-71!GO:0005739;mitochondrion;1.69902051225558e-61!GO:0043283;biopolymer metabolic process;7.28585211224712e-59!GO:0016043;cellular component organization and biogenesis;6.11042035119047e-56!GO:0010467;gene expression;1.58923611574893e-52!GO:0006396;RNA processing;2.42647198263426e-51!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.15070147250225e-51!GO:0031981;nuclear lumen;1.30644206007462e-50!GO:0043234;protein complex;1.33173694027337e-50!GO:0005840;ribosome;2.64004653166644e-50!GO:0006412;translation;1.38866167869716e-49!GO:0031090;organelle membrane;3.74178910241476e-49!GO:0019538;protein metabolic process;1.66491474166625e-48!GO:0033036;macromolecule localization;1.30486200669402e-46!GO:0015031;protein transport;1.62276706404905e-44!GO:0003735;structural constituent of ribosome;7.71089166706009e-44!GO:0044260;cellular macromolecule metabolic process;1.79105679966037e-43!GO:0044267;cellular protein metabolic process;1.07792961063358e-42!GO:0008104;protein localization;1.09485298657524e-42!GO:0045184;establishment of protein localization;1.21642722159341e-42!GO:0044429;mitochondrial part;1.060167671338e-40!GO:0016071;mRNA metabolic process;2.64344006422871e-39!GO:0046907;intracellular transport;1.17317206754457e-38!GO:0033279;ribosomal subunit;9.11692906444288e-38!GO:0008380;RNA splicing;3.2899978760147e-37!GO:0006996;organelle organization and biogenesis;4.14205073881223e-37!GO:0009059;macromolecule biosynthetic process;6.03813777452484e-37!GO:0031967;organelle envelope;6.80553363313751e-37!GO:0043228;non-membrane-bound organelle;8.63304648461724e-37!GO:0043232;intracellular non-membrane-bound organelle;8.63304648461724e-37!GO:0005829;cytosol;1.20048845270189e-36!GO:0031975;envelope;1.62411514021707e-36!GO:0009058;biosynthetic process;1.83761026005533e-35!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.43491283347454e-35!GO:0044249;cellular biosynthetic process;1.50632676644503e-34!GO:0006397;mRNA processing;9.02307910503641e-34!GO:0003676;nucleic acid binding;5.27881297298349e-33!GO:0065003;macromolecular complex assembly;1.61073148196096e-31!GO:0006886;intracellular protein transport;2.05051776617387e-30!GO:0005654;nucleoplasm;5.99012864320747e-30!GO:0006259;DNA metabolic process;7.19558578286172e-29!GO:0022607;cellular component assembly;1.84009384693718e-28!GO:0051641;cellular localization;6.64417601011673e-28!GO:0051649;establishment of cellular localization;7.94737591229634e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.22198623687376e-27!GO:0016070;RNA metabolic process;4.64066161688088e-27!GO:0007049;cell cycle;5.48613287140958e-27!GO:0005681;spliceosome;6.79347849911271e-27!GO:0005740;mitochondrial envelope;9.40819124265518e-26!GO:0044451;nucleoplasm part;4.0052863338666e-24!GO:0031966;mitochondrial membrane;5.38933843572884e-24!GO:0000166;nucleotide binding;1.83416098836119e-23!GO:0044445;cytosolic part;6.09311125050032e-23!GO:0019866;organelle inner membrane;6.90993722610724e-23!GO:0005730;nucleolus;2.51035579830566e-22!GO:0012505;endomembrane system;2.39320560941338e-21!GO:0022402;cell cycle process;2.87966106702385e-21!GO:0022618;protein-RNA complex assembly;4.89047730692568e-21!GO:0005743;mitochondrial inner membrane;5.19193142278245e-21!GO:0016462;pyrophosphatase activity;5.19193142278245e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.82535002314205e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;1.18296044553942e-20!GO:0000278;mitotic cell cycle;2.08622842960038e-20!GO:0006119;oxidative phosphorylation;4.14832258860452e-20!GO:0017111;nucleoside-triphosphatase activity;4.20392493827688e-20!GO:0015934;large ribosomal subunit;5.12500526625338e-20!GO:0006457;protein folding;1.08978457683401e-19!GO:0015935;small ribosomal subunit;6.82687907687494e-19!GO:0044455;mitochondrial membrane part;1.06838045657604e-18!GO:0005783;endoplasmic reticulum;1.12966310200048e-18!GO:0048770;pigment granule;5.64229597208344e-18!GO:0042470;melanosome;5.64229597208344e-18!GO:0016874;ligase activity;5.64229597208344e-18!GO:0031980;mitochondrial lumen;8.9776143479198e-18!GO:0005759;mitochondrial matrix;8.9776143479198e-18!GO:0044265;cellular macromolecule catabolic process;8.9776143479198e-18!GO:0005794;Golgi apparatus;1.01548404328761e-17!GO:0032553;ribonucleotide binding;1.45359314325916e-17!GO:0032555;purine ribonucleotide binding;1.45359314325916e-17!GO:0008134;transcription factor binding;1.63144564626234e-17!GO:0043285;biopolymer catabolic process;2.46974886564787e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.88187455324514e-17!GO:0019941;modification-dependent protein catabolic process;1.04421756413071e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.04421756413071e-16!GO:0017076;purine nucleotide binding;1.5055225704164e-16!GO:0044257;cellular protein catabolic process;1.67726408474944e-16!GO:0006512;ubiquitin cycle;1.85292067295297e-16!GO:0006511;ubiquitin-dependent protein catabolic process;1.85292067295297e-16!GO:0048193;Golgi vesicle transport;2.47930108777946e-16!GO:0009057;macromolecule catabolic process;3.54551820775753e-16!GO:0006974;response to DNA damage stimulus;3.62712254907579e-16!GO:0016192;vesicle-mediated transport;6.91191828344961e-16!GO:0008135;translation factor activity, nucleic acid binding;6.96065776532583e-16!GO:0000502;proteasome complex (sensu Eukaryota);8.90092212697912e-16!GO:0042254;ribosome biogenesis and assembly;1.01343662219303e-15!GO:0005746;mitochondrial respiratory chain;2.00229814828248e-15!GO:0005524;ATP binding;2.47667528173908e-15!GO:0044432;endoplasmic reticulum part;2.64596008120479e-15!GO:0006605;protein targeting;3.29110511579451e-15!GO:0030163;protein catabolic process;5.57273666358866e-15!GO:0032559;adenyl ribonucleotide binding;5.64073331172994e-15!GO:0000087;M phase of mitotic cell cycle;6.17088786980953e-15!GO:0007067;mitosis;1.17318638400865e-14!GO:0044248;cellular catabolic process;1.17318638400865e-14!GO:0005761;mitochondrial ribosome;1.30588680396819e-14!GO:0000313;organellar ribosome;1.30588680396819e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.47564938707809e-14!GO:0022403;cell cycle phase;1.49149680119425e-14!GO:0005694;chromosome;1.86566525489784e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.17401398993157e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.19795266571532e-14!GO:0003954;NADH dehydrogenase activity;2.19795266571532e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.19795266571532e-14!GO:0043412;biopolymer modification;2.9560408243013e-14!GO:0000398;nuclear mRNA splicing, via spliceosome;2.9560408243013e-14!GO:0000375;RNA splicing, via transesterification reactions;2.9560408243013e-14!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.9560408243013e-14!GO:0051082;unfolded protein binding;3.02554588186989e-14!GO:0030554;adenyl nucleotide binding;8.24882102572735e-14!GO:0051301;cell division;1.12950873872201e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.13022944069374e-13!GO:0006281;DNA repair;2.2970915799672e-13!GO:0050794;regulation of cellular process;3.99404612242065e-13!GO:0006413;translational initiation;5.4602909704737e-13!GO:0012501;programmed cell death;6.33437961074605e-13!GO:0051276;chromosome organization and biogenesis;9.91765859323758e-13!GO:0006915;apoptosis;1.32151791476668e-12!GO:0044427;chromosomal part;1.60775275702799e-12!GO:0051726;regulation of cell cycle;1.84158486006533e-12!GO:0051186;cofactor metabolic process;1.8822273911101e-12!GO:0000074;regulation of progression through cell cycle;2.06352683956296e-12!GO:0003743;translation initiation factor activity;2.18611547903805e-12!GO:0006464;protein modification process;2.36775093448469e-12!GO:0030964;NADH dehydrogenase complex (quinone);2.74044316086374e-12!GO:0045271;respiratory chain complex I;2.74044316086374e-12!GO:0005747;mitochondrial respiratory chain complex I;2.74044316086374e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.26583916851774e-12!GO:0042773;ATP synthesis coupled electron transport;3.26583916851774e-12!GO:0005635;nuclear envelope;4.75991437816914e-12!GO:0016604;nuclear body;5.85306084766183e-12!GO:0006446;regulation of translational initiation;7.06033227882439e-12!GO:0008219;cell death;8.07498284142604e-12!GO:0016265;death;8.07498284142604e-12!GO:0006913;nucleocytoplasmic transport;8.17755231918431e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.16456616467396e-12!GO:0031965;nuclear membrane;1.5521174826654e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.57552797865085e-11!GO:0005793;ER-Golgi intermediate compartment;1.68682435971071e-11!GO:0000279;M phase;2.22826121304987e-11!GO:0051169;nuclear transport;2.22826121304987e-11!GO:0009719;response to endogenous stimulus;3.63295515842257e-11!GO:0006399;tRNA metabolic process;5.72244326091392e-11!GO:0016887;ATPase activity;5.75957307921561e-11!GO:0006260;DNA replication;7.44995494078548e-11!GO:0043687;post-translational protein modification;8.08069425734916e-11!GO:0044453;nuclear membrane part;9.56827318964325e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;9.67796121666769e-11!GO:0003712;transcription cofactor activity;1.1326833805097e-10!GO:0004386;helicase activity;1.2278424088444e-10!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.28471857433385e-10!GO:0048523;negative regulation of cellular process;1.61635472768385e-10!GO:0006366;transcription from RNA polymerase II promoter;2.04860100269898e-10!GO:0008639;small protein conjugating enzyme activity;2.61635390344599e-10!GO:0042623;ATPase activity, coupled;2.67069476679497e-10!GO:0005789;endoplasmic reticulum membrane;3.54991837680616e-10!GO:0006323;DNA packaging;3.75684555144856e-10!GO:0019787;small conjugating protein ligase activity;4.01862306114128e-10!GO:0004842;ubiquitin-protein ligase activity;5.77086113787188e-10!GO:0006364;rRNA processing;8.30796420346453e-10!GO:0017038;protein import;8.93777868554147e-10!GO:0008026;ATP-dependent helicase activity;1.68436854064363e-09!GO:0009259;ribonucleotide metabolic process;1.87067256763347e-09!GO:0006732;coenzyme metabolic process;1.87999641227093e-09!GO:0006163;purine nucleotide metabolic process;2.08692334216198e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.26496351014537e-09!GO:0009055;electron carrier activity;2.46981317650407e-09!GO:0016072;rRNA metabolic process;2.53762000497776e-09!GO:0043067;regulation of programmed cell death;2.61893696272483e-09!GO:0042981;regulation of apoptosis;2.99777376922525e-09!GO:0008565;protein transporter activity;3.08180859649744e-09!GO:0006164;purine nucleotide biosynthetic process;3.29651925272397e-09!GO:0050789;regulation of biological process;3.35579188307429e-09!GO:0005643;nuclear pore;4.00442748440076e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.43680349520576e-09!GO:0004812;aminoacyl-tRNA ligase activity;4.43680349520576e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.43680349520576e-09!GO:0016881;acid-amino acid ligase activity;5.13561786759259e-09!GO:0016607;nuclear speck;5.21611655068485e-09!GO:0006461;protein complex assembly;5.51348353643284e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.95536547189847e-09!GO:0043038;amino acid activation;7.72816939876091e-09!GO:0006418;tRNA aminoacylation for protein translation;7.72816939876091e-09!GO:0043039;tRNA aminoacylation;7.72816939876091e-09!GO:0019222;regulation of metabolic process;7.98181493229646e-09!GO:0005768;endosome;8.1441306274801e-09!GO:0048519;negative regulation of biological process;8.50605008422847e-09!GO:0009056;catabolic process;9.27597122754774e-09!GO:0009260;ribonucleotide biosynthetic process;9.36918061718521e-09!GO:0015630;microtubule cytoskeleton;9.5646222383215e-09!GO:0044431;Golgi apparatus part;9.6468922708154e-09!GO:0009150;purine ribonucleotide metabolic process;9.98312960945895e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.59663034505523e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.75921401875973e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.18113116755679e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.65158362456085e-08!GO:0006403;RNA localization;2.91210770321518e-08!GO:0065002;intracellular protein transport across a membrane;2.91210770321518e-08!GO:0030120;vesicle coat;3.46270703258354e-08!GO:0030662;coated vesicle membrane;3.46270703258354e-08!GO:0050657;nucleic acid transport;5.7373442759536e-08!GO:0051236;establishment of RNA localization;5.7373442759536e-08!GO:0050658;RNA transport;5.7373442759536e-08!GO:0005788;endoplasmic reticulum lumen;6.01150477415935e-08!GO:0048475;coated membrane;6.73458920982939e-08!GO:0030117;membrane coat;6.73458920982939e-08!GO:0005667;transcription factor complex;7.52552081578849e-08!GO:0051246;regulation of protein metabolic process;9.69399833235936e-08!GO:0043069;negative regulation of programmed cell death;1.14810433437388e-07!GO:0006916;anti-apoptosis;1.42348044971e-07!GO:0003924;GTPase activity;1.43044820266803e-07!GO:0000785;chromatin;1.48014899560404e-07!GO:0015986;ATP synthesis coupled proton transport;1.94813966897588e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.94813966897588e-07!GO:0000245;spliceosome assembly;2.05268228340327e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.47133853943451e-07!GO:0016740;transferase activity;2.51963189638315e-07!GO:0031324;negative regulation of cellular metabolic process;2.53910023626569e-07!GO:0043566;structure-specific DNA binding;2.58569091619775e-07!GO:0007005;mitochondrion organization and biogenesis;2.70706871533172e-07!GO:0009141;nucleoside triphosphate metabolic process;2.73949563489847e-07!GO:0046930;pore complex;2.77123348844152e-07!GO:0016568;chromatin modification;2.84402555174373e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.09573120263955e-07!GO:0043066;negative regulation of apoptosis;3.21637973002265e-07!GO:0009142;nucleoside triphosphate biosynthetic process;4.05095305214522e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.05095305214522e-07!GO:0016564;transcription repressor activity;4.37930039200747e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.4386240518472e-07!GO:0009144;purine nucleoside triphosphate metabolic process;4.4386240518472e-07!GO:0003697;single-stranded DNA binding;4.4906750477838e-07!GO:0016779;nucleotidyltransferase activity;4.64372229423592e-07!GO:0003714;transcription corepressor activity;5.40107728113563e-07!GO:0065004;protein-DNA complex assembly;6.9879862646799e-07!GO:0009060;aerobic respiration;7.39336238304258e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.45345049639688e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.45345049639688e-07!GO:0000139;Golgi membrane;7.73317537161746e-07!GO:0006333;chromatin assembly or disassembly;8.00101938256868e-07!GO:0019829;cation-transporting ATPase activity;9.79760967356753e-07!GO:0045786;negative regulation of progression through cell cycle;1.05435276476291e-06!GO:0051170;nuclear import;1.15973015265993e-06!GO:0031988;membrane-bound vesicle;1.26264498808139e-06!GO:0043623;cellular protein complex assembly;1.30646260320051e-06!GO:0005819;spindle;1.31938547832216e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.65788671148616e-06!GO:0006793;phosphorus metabolic process;1.70396800671337e-06!GO:0006796;phosphate metabolic process;1.70396800671337e-06!GO:0051028;mRNA transport;1.95272637955353e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.0773700451018e-06!GO:0051329;interphase of mitotic cell cycle;2.16713990215406e-06!GO:0006606;protein import into nucleus;2.21441525141672e-06!GO:0046034;ATP metabolic process;2.36765908865981e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.37740133269704e-06!GO:0000075;cell cycle checkpoint;2.37863380322292e-06!GO:0051188;cofactor biosynthetic process;2.40370700613104e-06!GO:0005798;Golgi-associated vesicle;2.46390318626596e-06!GO:0009117;nucleotide metabolic process;2.58368592770703e-06!GO:0045259;proton-transporting ATP synthase complex;2.84399498316119e-06!GO:0031323;regulation of cellular metabolic process;2.96813506203871e-06!GO:0044440;endosomal part;3.05511007059718e-06!GO:0010008;endosome membrane;3.05511007059718e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.18057062789327e-06!GO:0006754;ATP biosynthetic process;3.21429317097878e-06!GO:0006753;nucleoside phosphate metabolic process;3.21429317097878e-06!GO:0009892;negative regulation of metabolic process;3.40327487276665e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.55120013211922e-06!GO:0031252;leading edge;3.56122833046434e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.69127939192142e-06!GO:0051325;interphase;3.96632536160276e-06!GO:0007010;cytoskeleton organization and biogenesis;4.02496038066829e-06!GO:0016469;proton-transporting two-sector ATPase complex;4.35725274481704e-06!GO:0003899;DNA-directed RNA polymerase activity;4.66810583595604e-06!GO:0006099;tricarboxylic acid cycle;5.31611255382969e-06!GO:0046356;acetyl-CoA catabolic process;5.31611255382969e-06!GO:0051187;cofactor catabolic process;6.57298225765336e-06!GO:0032446;protein modification by small protein conjugation;6.61737738047369e-06!GO:0003724;RNA helicase activity;6.68551795508676e-06!GO:0005770;late endosome;7.02642955255293e-06!GO:0031982;vesicle;7.64971067376484e-06!GO:0045333;cellular respiration;7.90985354009134e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.81445230146983e-06!GO:0005813;centrosome;8.89881991858706e-06!GO:0000151;ubiquitin ligase complex;9.38859660458865e-06!GO:0016787;hydrolase activity;9.60033454692742e-06!GO:0016310;phosphorylation;1.03758488670592e-05!GO:0016567;protein ubiquitination;1.08260817548418e-05!GO:0006613;cotranslational protein targeting to membrane;1.13028185644376e-05!GO:0008361;regulation of cell size;1.13903588654474e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.14322156827841e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.23265191809203e-05!GO:0006350;transcription;1.30801528276522e-05!GO:0009109;coenzyme catabolic process;1.40970814946116e-05!GO:0031410;cytoplasmic vesicle;1.51778116764414e-05!GO:0000775;chromosome, pericentric region;1.56285188008881e-05!GO:0005762;mitochondrial large ribosomal subunit;1.65197123647817e-05!GO:0000315;organellar large ribosomal subunit;1.65197123647817e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.70545946009259e-05!GO:0016049;cell growth;1.70545946009259e-05!GO:0030133;transport vesicle;1.76354143286864e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.94348466585984e-05!GO:0007051;spindle organization and biogenesis;1.98707215535767e-05!GO:0004298;threonine endopeptidase activity;2.03737074563253e-05!GO:0016853;isomerase activity;2.09225532621669e-05!GO:0006752;group transfer coenzyme metabolic process;2.46009930468944e-05!GO:0005815;microtubule organizing center;2.60143947599166e-05!GO:0006261;DNA-dependent DNA replication;2.61821120927849e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.72631773949549e-05!GO:0006084;acetyl-CoA metabolic process;2.81925536052855e-05!GO:0001558;regulation of cell growth;3.45916406250985e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;3.52844289049467e-05!GO:0005048;signal sequence binding;4.02398646546286e-05!GO:0051427;hormone receptor binding;4.25252239433069e-05!GO:0016859;cis-trans isomerase activity;4.43888705289429e-05!GO:0030867;rough endoplasmic reticulum membrane;4.47836579641601e-05!GO:0016563;transcription activator activity;5.1122719163241e-05!GO:0005773;vacuole;5.293737696505e-05!GO:0005525;GTP binding;5.38923821215188e-05!GO:0065007;biological regulation;5.98480990448163e-05!GO:0009108;coenzyme biosynthetic process;6.30930011073853e-05!GO:0051789;response to protein stimulus;8.02201318129176e-05!GO:0006986;response to unfolded protein;8.02201318129176e-05!GO:0010468;regulation of gene expression;8.02227880264424e-05!GO:0000314;organellar small ribosomal subunit;8.37273342442143e-05!GO:0005763;mitochondrial small ribosomal subunit;8.37273342442143e-05!GO:0006334;nucleosome assembly;8.69229000298213e-05!GO:0035257;nuclear hormone receptor binding;9.02690444543734e-05!GO:0005769;early endosome;9.27285773027674e-05!GO:0044452;nucleolar part;9.27841915066734e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000113223647654824!GO:0016481;negative regulation of transcription;0.000125816624823093!GO:0000323;lytic vacuole;0.000127149848526063!GO:0005764;lysosome;0.000127149848526063!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000127368719105132!GO:0008092;cytoskeletal protein binding;0.000129913935958774!GO:0045454;cell redox homeostasis;0.000129981028099916!GO:0043021;ribonucleoprotein binding;0.000130366400647465!GO:0031497;chromatin assembly;0.000180829225351543!GO:0048471;perinuclear region of cytoplasm;0.0001928410322491!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000196145059153042!GO:0019899;enzyme binding;0.00019618823002927!GO:0005905;coated pit;0.000201658632041295!GO:0051168;nuclear export;0.000205214905688365!GO:0008186;RNA-dependent ATPase activity;0.000226095428021319!GO:0005874;microtubule;0.000242560061165132!GO:0007093;mitotic cell cycle checkpoint;0.000265219063498308!GO:0008250;oligosaccharyl transferase complex;0.000270104281166626!GO:0000082;G1/S transition of mitotic cell cycle;0.000279706937412503!GO:0033116;ER-Golgi intermediate compartment membrane;0.000287291351693339!GO:0030036;actin cytoskeleton organization and biogenesis;0.000294862706851391!GO:0003713;transcription coactivator activity;0.000383825651978762!GO:0032774;RNA biosynthetic process;0.00038432927130851!GO:0019843;rRNA binding;0.000394607965133538!GO:0030663;COPI coated vesicle membrane;0.000394607965133538!GO:0030126;COPI vesicle coat;0.000394607965133538!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000396519712911535!GO:0007243;protein kinase cascade;0.000401186542157441!GO:0003682;chromatin binding;0.000435343728021403!GO:0006351;transcription, DNA-dependent;0.000439349963453292!GO:0032561;guanyl ribonucleotide binding;0.000443818144255139!GO:0019001;guanyl nucleotide binding;0.000443818144255139!GO:0007088;regulation of mitosis;0.000464198704029766!GO:0043065;positive regulation of apoptosis;0.0004908411213855!GO:0016363;nuclear matrix;0.000501578597989705!GO:0003690;double-stranded DNA binding;0.000523831544989735!GO:0048522;positive regulation of cellular process;0.000541704258173658!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000544766062454696!GO:0005657;replication fork;0.000580171805522111!GO:0005885;Arp2/3 protein complex;0.000612903571112586!GO:0018196;peptidyl-asparagine modification;0.000621084386503789!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000621084386503789!GO:0031968;organelle outer membrane;0.000635543581740161!GO:0043068;positive regulation of programmed cell death;0.000636793329935617!GO:0043681;protein import into mitochondrion;0.000643041076512357!GO:0004004;ATP-dependent RNA helicase activity;0.000655960328851054!GO:0019867;outer membrane;0.000660442278248026!GO:0006891;intra-Golgi vesicle-mediated transport;0.000665057961027027!GO:0001726;ruffle;0.000683249590155294!GO:0007050;cell cycle arrest;0.000686663144200246!GO:0006626;protein targeting to mitochondrion;0.000686663144200246!GO:0004576;oligosaccharyl transferase activity;0.000689374495091901!GO:0008654;phospholipid biosynthetic process;0.000711489007160701!GO:0006612;protein targeting to membrane;0.000750832320478478!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000780158782236033!GO:0045045;secretory pathway;0.000784130391884833!GO:0003729;mRNA binding;0.000892183143373691!GO:0030137;COPI-coated vesicle;0.000905353969900565!GO:0005791;rough endoplasmic reticulum;0.000915372778563622!GO:0016044;membrane organization and biogenesis;0.000972869524123249!GO:0005741;mitochondrial outer membrane;0.000991234592333703!GO:0005684;U2-dependent spliceosome;0.00100921468983988!GO:0006839;mitochondrial transport;0.00103552283964313!GO:0008094;DNA-dependent ATPase activity;0.00106971138132796!GO:0008033;tRNA processing;0.00115804514083172!GO:0006383;transcription from RNA polymerase III promoter;0.00115967272573826!GO:0006302;double-strand break repair;0.00116970239494651!GO:0000059;protein import into nucleus, docking;0.00121946614220689!GO:0044262;cellular carbohydrate metabolic process;0.00126709081332165!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.0013176226968044!GO:0051052;regulation of DNA metabolic process;0.00146929644958249!GO:0007017;microtubule-based process;0.00147124336105236!GO:0009165;nucleotide biosynthetic process;0.00153648182890302!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00153648182890302!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00153648182890302!GO:0008022;protein C-terminus binding;0.00156145324503092!GO:0030134;ER to Golgi transport vesicle;0.00157349546324048!GO:0015980;energy derivation by oxidation of organic compounds;0.00159664297291014!GO:0030880;RNA polymerase complex;0.00162483017898899!GO:0051920;peroxiredoxin activity;0.00162997126589682!GO:0008139;nuclear localization sequence binding;0.00170143165112368!GO:0031072;heat shock protein binding;0.00170901554718714!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00170901554718714!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00170901554718714!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00170901554718714!GO:0000776;kinetochore;0.00172395600205912!GO:0032940;secretion by cell;0.00172395600205912!GO:0009112;nucleobase metabolic process;0.00173384775779945!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.001743803750058!GO:0030658;transport vesicle membrane;0.0017761468826963!GO:0006414;translational elongation;0.00177656974079405!GO:0030127;COPII vesicle coat;0.00178750235381182!GO:0012507;ER to Golgi transport vesicle membrane;0.00178750235381182!GO:0030029;actin filament-based process;0.00179062574693846!GO:0040008;regulation of growth;0.00180592068168113!GO:0048500;signal recognition particle;0.00184565231190654!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00189583373433365!GO:0016197;endosome transport;0.00207249875641156!GO:0016126;sterol biosynthetic process;0.00209283075186779!GO:0045449;regulation of transcription;0.00213239180834069!GO:0007006;mitochondrial membrane organization and biogenesis;0.00215723898148162!GO:0003678;DNA helicase activity;0.00226282712662123!GO:0046474;glycerophospholipid biosynthetic process;0.00234414787660564!GO:0006402;mRNA catabolic process;0.00237435911434976!GO:0030027;lamellipodium;0.00259028243453538!GO:0006401;RNA catabolic process;0.00265979092244901!GO:0016272;prefoldin complex;0.00270035241561716!GO:0004674;protein serine/threonine kinase activity;0.00276169269467964!GO:0003684;damaged DNA binding;0.00281485293961334!GO:0000049;tRNA binding;0.00296431989276349!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00304426386994347!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00304426386994347!GO:0016491;oxidoreductase activity;0.00315241059427114!GO:0030176;integral to endoplasmic reticulum membrane;0.00325348537640185!GO:0046489;phosphoinositide biosynthetic process;0.0032789751663561!GO:0007052;mitotic spindle organization and biogenesis;0.00335105850800173!GO:0015631;tubulin binding;0.00335155467702513!GO:0051252;regulation of RNA metabolic process;0.00377542466233781!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00381405504189896!GO:0000428;DNA-directed RNA polymerase complex;0.00381405504189896!GO:0003711;transcription elongation regulator activity;0.00381405504189896!GO:0042802;identical protein binding;0.00383605252738781!GO:0030660;Golgi-associated vesicle membrane;0.00387068101839883!GO:0030132;clathrin coat of coated pit;0.00389365411942569!GO:0006310;DNA recombination;0.00390939954692458!GO:0030118;clathrin coat;0.00390939954692458!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00391727138138014!GO:0006892;post-Golgi vesicle-mediated transport;0.0041760941928242!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00429231781090021!GO:0046483;heterocycle metabolic process;0.00432216460526968!GO:0006695;cholesterol biosynthetic process;0.00450110740082977!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00465510166159509!GO:0043284;biopolymer biosynthetic process;0.00473083889345919!GO:0031124;mRNA 3'-end processing;0.00475337308290837!GO:0006611;protein export from nucleus;0.00539244775388984!GO:0006352;transcription initiation;0.00541145627367151!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00552055221180696!GO:0045047;protein targeting to ER;0.00552055221180696!GO:0006144;purine base metabolic process;0.00574363083856587!GO:0006672;ceramide metabolic process;0.00605024591193429!GO:0031902;late endosome membrane;0.0060938735560881!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0062845071038808!GO:0046519;sphingoid metabolic process;0.00636035237586368!GO:0035258;steroid hormone receptor binding;0.00636287612364499!GO:0008312;7S RNA binding;0.00700624675402769!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00704645064091499!GO:0045892;negative regulation of transcription, DNA-dependent;0.00704645064091499!GO:0043624;cellular protein complex disassembly;0.00749986248721937!GO:0005637;nuclear inner membrane;0.00765795970497506!GO:0000792;heterochromatin;0.00776258028449196!GO:0031625;ubiquitin protein ligase binding;0.0079900915944429!GO:0043488;regulation of mRNA stability;0.00814633414130476!GO:0043487;regulation of RNA stability;0.00814633414130476!GO:0051087;chaperone binding;0.00830541005578329!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00830541005578329!GO:0048468;cell development;0.00867687687873255!GO:0032984;macromolecular complex disassembly;0.00885054454708537!GO:0043414;biopolymer methylation;0.00898514844774582!GO:0006355;regulation of transcription, DNA-dependent;0.00935425388295136!GO:0048487;beta-tubulin binding;0.00963553752473734!GO:0005876;spindle microtubule;0.00976611617311282!GO:0006509;membrane protein ectodomain proteolysis;0.0097920960955014!GO:0033619;membrane protein proteolysis;0.0097920960955014!GO:0008629;induction of apoptosis by intracellular signals;0.00998534051638922!GO:0031901;early endosome membrane;0.0102795582748412!GO:0007040;lysosome organization and biogenesis;0.0104002276404238!GO:0030521;androgen receptor signaling pathway;0.0104260666039401!GO:0065009;regulation of a molecular function;0.0104707854122105!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0107907239813907!GO:0000910;cytokinesis;0.0109731570281739!GO:0043022;ribosome binding;0.0111947042391518!GO:0006284;base-excision repair;0.0113088938922626!GO:0005832;chaperonin-containing T-complex;0.0113300401746907!GO:0006650;glycerophospholipid metabolic process;0.0113300401746907!GO:0022415;viral reproductive process;0.0114438104725402!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0115129112512078!GO:0006275;regulation of DNA replication;0.0115593625776188!GO:0043241;protein complex disassembly;0.0117919390861989!GO:0008047;enzyme activator activity;0.0118076714885003!GO:0006595;polyamine metabolic process;0.0118915122886528!GO:0006917;induction of apoptosis;0.0119622253487829!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0119622253487829!GO:0015002;heme-copper terminal oxidase activity;0.0119622253487829!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0119622253487829!GO:0004129;cytochrome-c oxidase activity;0.0119622253487829!GO:0045936;negative regulation of phosphate metabolic process;0.0119978669352405!GO:0006091;generation of precursor metabolites and energy;0.0120255147572542!GO:0005669;transcription factor TFIID complex;0.0126654076365723!GO:0030308;negative regulation of cell growth;0.0126697142347033!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.012922660261604!GO:0006740;NADPH regeneration;0.0129315606478577!GO:0006098;pentose-phosphate shunt;0.0129315606478577!GO:0016741;transferase activity, transferring one-carbon groups;0.0131586114441921!GO:0032508;DNA duplex unwinding;0.0131586114441921!GO:0032392;DNA geometric change;0.0131586114441921!GO:0005862;muscle thin filament tropomyosin;0.0131917801772377!GO:0003779;actin binding;0.0133785238694707!GO:0003746;translation elongation factor activity;0.0133785238694707!GO:0045893;positive regulation of transcription, DNA-dependent;0.0133785238694707!GO:0000118;histone deacetylase complex;0.0134773564965029!GO:0006007;glucose catabolic process;0.0135131987682094!GO:0006417;regulation of translation;0.0135709938798429!GO:0045792;negative regulation of cell size;0.0139048646370358!GO:0030659;cytoplasmic vesicle membrane;0.0139048646370358!GO:0031529;ruffle organization and biogenesis;0.0139419800455446!GO:0043433;negative regulation of transcription factor activity;0.0139615874518712!GO:0000339;RNA cap binding;0.0143494553047413!GO:0050178;phenylpyruvate tautomerase activity;0.0143494553047413!GO:0008168;methyltransferase activity;0.0144498428088516!GO:0051101;regulation of DNA binding;0.0152426493496623!GO:0016251;general RNA polymerase II transcription factor activity;0.0155078958242142!GO:0051540;metal cluster binding;0.0155455576894714!GO:0051536;iron-sulfur cluster binding;0.0155455576894714!GO:0031543;peptidyl-proline dioxygenase activity;0.0155997164991476!GO:0004518;nuclease activity;0.015625729162439!GO:0042326;negative regulation of phosphorylation;0.0156529062935408!GO:0012502;induction of programmed cell death;0.0156704783414009!GO:0008180;signalosome;0.0157572605402345!GO:0003677;DNA binding;0.0157584143812142!GO:0000287;magnesium ion binding;0.0159904082009724!GO:0051059;NF-kappaB binding;0.0167172875952549!GO:0032259;methylation;0.0169080444806277!GO:0006378;mRNA polyadenylation;0.0170421624507317!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.017106563741237!GO:0015399;primary active transmembrane transporter activity;0.017106563741237!GO:0030119;AP-type membrane coat adaptor complex;0.017106563741237!GO:0046983;protein dimerization activity;0.0171816535571166!GO:0015992;proton transport;0.0175004823268155!GO:0006818;hydrogen transport;0.0178962890233328!GO:0019798;procollagen-proline dioxygenase activity;0.0180158741629443!GO:0030149;sphingolipid catabolic process;0.0180730186775911!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0182029452341181!GO:0031418;L-ascorbic acid binding;0.0185202206252862!GO:0008287;protein serine/threonine phosphatase complex;0.0185748155956778!GO:0022411;cellular component disassembly;0.0185828924066447!GO:0033673;negative regulation of kinase activity;0.0190814116025512!GO:0006469;negative regulation of protein kinase activity;0.0190814116025512!GO:0006338;chromatin remodeling;0.0197454551670592!GO:0046966;thyroid hormone receptor binding;0.0199066060726909!GO:0006506;GPI anchor biosynthetic process;0.0200151862502426!GO:0031371;ubiquitin conjugating enzyme complex;0.0200853819456565!GO:0046467;membrane lipid biosynthetic process;0.0202748003520584!GO:0005869;dynactin complex;0.0205807402376879!GO:0031123;RNA 3'-end processing;0.0205894089427913!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.021108694188108!GO:0030384;phosphoinositide metabolic process;0.0211363473893458!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0212080487962193!GO:0009116;nucleoside metabolic process;0.0218403006654178!GO:0032200;telomere organization and biogenesis;0.0221953950913348!GO:0000723;telomere maintenance;0.0221953950913348!GO:0006405;RNA export from nucleus;0.0221953950913348!GO:0006497;protein amino acid lipidation;0.0222276805678923!GO:0004003;ATP-dependent DNA helicase activity;0.0223978651201573!GO:0004527;exonuclease activity;0.0224019272447903!GO:0046870;cadmium ion binding;0.0228613378336754!GO:0006950;response to stress;0.0237262872332603!GO:0006268;DNA unwinding during replication;0.0238423805236666!GO:0045941;positive regulation of transcription;0.0239204971301868!GO:0031577;spindle checkpoint;0.0241191278709273!GO:0022890;inorganic cation transmembrane transporter activity;0.0241262430723051!GO:0006778;porphyrin metabolic process;0.0242066830948153!GO:0033013;tetrapyrrole metabolic process;0.0242066830948153!GO:0043189;H4/H2A histone acetyltransferase complex;0.0243648660736317!GO:0030145;manganese ion binding;0.0244064330678791!GO:0000152;nuclear ubiquitin ligase complex;0.024698668510601!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0247707386287824!GO:0050681;androgen receptor binding;0.0248755437802367!GO:0008538;proteasome activator activity;0.0253924555391766!GO:0030131;clathrin adaptor complex;0.0257456961006264!GO:0042770;DNA damage response, signal transduction;0.0258179399639703!GO:0007033;vacuole organization and biogenesis;0.02626163574898!GO:0006505;GPI anchor metabolic process;0.0267966611998131!GO:0005801;cis-Golgi network;0.027104734129381!GO:0051348;negative regulation of transferase activity;0.027104734129381!GO:0000209;protein polyubiquitination;0.0272027129847206!GO:0003756;protein disulfide isomerase activity;0.0277530741190059!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0277530741190059!GO:0030032;lamellipodium biogenesis;0.0278470533732151!GO:0001666;response to hypoxia;0.0279352885622072!GO:0031575;G1/S transition checkpoint;0.0280712380897612!GO:0003923;GPI-anchor transamidase activity;0.0281198595607189!GO:0016255;attachment of GPI anchor to protein;0.0281198595607189!GO:0042765;GPI-anchor transamidase complex;0.0281198595607189!GO:0006376;mRNA splice site selection;0.0281557863911303!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0281557863911303!GO:0022408;negative regulation of cell-cell adhesion;0.0284220932773906!GO:0016408;C-acyltransferase activity;0.0284220932773906!GO:0044433;cytoplasmic vesicle part;0.0284220932773906!GO:0012506;vesicle membrane;0.0285258799404329!GO:0030125;clathrin vesicle coat;0.0287279821640644!GO:0030665;clathrin coated vesicle membrane;0.0287279821640644!GO:0046426;negative regulation of JAK-STAT cascade;0.0287279821640644!GO:0051539;4 iron, 4 sulfur cluster binding;0.029734263216947!GO:0006607;NLS-bearing substrate import into nucleus;0.0298960637575639!GO:0033239;negative regulation of amine metabolic process;0.0307525484127561!GO:0045763;negative regulation of amino acid metabolic process;0.0307525484127561!GO:0001933;negative regulation of protein amino acid phosphorylation;0.0307525484127561!GO:0035267;NuA4 histone acetyltransferase complex;0.0319391099805099!GO:0008601;protein phosphatase type 2A regulator activity;0.0321678397228511!GO:0006541;glutamine metabolic process;0.0323008387567122!GO:0000725;recombinational repair;0.03239401368559!GO:0000724;double-strand break repair via homologous recombination;0.03239401368559!GO:0008017;microtubule binding;0.03239401368559!GO:0030496;midbody;0.03239401368559!GO:0003702;RNA polymerase II transcription factor activity;0.03239401368559!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.03239401368559!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.03239401368559!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.03239401368559!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0327345355568111!GO:0046914;transition metal ion binding;0.0330477969262809!GO:0006897;endocytosis;0.0330477969262809!GO:0010324;membrane invagination;0.0330477969262809!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0332125230971911!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0336499239759427!GO:0007059;chromosome segregation;0.0336550156226342!GO:0008270;zinc ion binding;0.0342698398842411!GO:0007030;Golgi organization and biogenesis;0.0343693688755477!GO:0042158;lipoprotein biosynthetic process;0.0348709998960711!GO:0030911;TPR domain binding;0.0350992235484542!GO:0005875;microtubule associated complex;0.0350992235484542!GO:0008632;apoptotic program;0.0352454352254474!GO:0001952;regulation of cell-matrix adhesion;0.0355041688212186!GO:0000786;nucleosome;0.0359680665144979!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0361379519383754!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0361379519383754!GO:0016791;phosphoric monoester hydrolase activity;0.0361611069205932!GO:0019318;hexose metabolic process;0.0369243027683969!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0370560199531012!GO:0004177;aminopeptidase activity;0.0372382037323915!GO:0006730;one-carbon compound metabolic process;0.0375020709923276!GO:0009889;regulation of biosynthetic process;0.0380846139752608!GO:0022406;membrane docking;0.0381077633973435!GO:0048278;vesicle docking;0.0381077633973435!GO:0019079;viral genome replication;0.0381929637540262!GO:0005784;translocon complex;0.0382999188477109!GO:0031326;regulation of cellular biosynthetic process;0.0383979341569557!GO:0006520;amino acid metabolic process;0.0384992267111724!GO:0051287;NAD binding;0.039302271907891!GO:0005938;cell cortex;0.0396288536472063!GO:0008610;lipid biosynthetic process;0.0402151550878294!GO:0019206;nucleoside kinase activity;0.0405523857093591!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0408377190725154!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0410215362643!GO:0016584;nucleosome positioning;0.0411230598890465!GO:0007346;regulation of progression through mitotic cell cycle;0.041623300809893!GO:0004860;protein kinase inhibitor activity;0.0416899512889026!GO:0046822;regulation of nucleocytoplasmic transport;0.0416899512889026!GO:0016301;kinase activity;0.0422178747537258!GO:0008637;apoptotic mitochondrial changes;0.0428347410105362!GO:0005851;eukaryotic translation initiation factor 2B complex;0.043342620269696!GO:0005758;mitochondrial intermembrane space;0.043342620269696!GO:0005996;monosaccharide metabolic process;0.043342620269696!GO:0030433;ER-associated protein catabolic process;0.0435324372428988!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0435324372428988!GO:0007264;small GTPase mediated signal transduction;0.044358563191903!GO:0047485;protein N-terminus binding;0.0443604289583346!GO:0019783;small conjugating protein-specific protease activity;0.04465001793124!GO:0035035;histone acetyltransferase binding;0.0446729311487581!GO:0000159;protein phosphatase type 2A complex;0.0446729311487581!GO:0043130;ubiquitin binding;0.0453271407034287!GO:0032182;small conjugating protein binding;0.0453271407034287!GO:0048518;positive regulation of biological process;0.0457754376943242!GO:0004185;serine carboxypeptidase activity;0.0460656618058622!GO:0006360;transcription from RNA polymerase I promoter;0.0461567716817141!GO:0030508;thiol-disulfide exchange intermediate activity;0.0470590438143279!GO:0032906;transforming growth factor-beta2 production;0.0472054122609592!GO:0032909;regulation of transforming growth factor-beta2 production;0.0472054122609592!GO:0006739;NADP metabolic process;0.0474811053287893!GO:0040029;regulation of gene expression, epigenetic;0.0475058411299176!GO:0006289;nucleotide-excision repair;0.0478584459923937!GO:0031570;DNA integrity checkpoint;0.0480240802683142!GO:0005774;vacuolar membrane;0.0481349897262251!GO:0051235;maintenance of localization;0.0482250735741372!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0484373746247308!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0485608111228636!GO:0051098;regulation of binding;0.0488877116218991!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0492185371177108!GO:0043495;protein anchor;0.0492185371177108!GO:0006984;ER-nuclear signaling pathway;0.0492185371177108!GO:0004843;ubiquitin-specific protease activity;0.0492185371177108!GO:0006354;RNA elongation;0.0492339555841008!GO:0009303;rRNA transcription;0.0494971379720407
|sample_id=10732
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=skin
|top_motifs=HIF1A:2.10319958271;NKX3-1:1.71079580563;PAX4:1.22211574347;ATF6:1.18126229056;HOX{A4,D4}:1.17800940195;TOPORS:1.14126292358;GFI1:1.11983098654;PITX1..3:1.10890462677;PPARG:1.0451800397;ELK1,4_GABP{A,B1}:1.00265453323;DBP:0.981019179789;POU3F1..4:0.975862852472;EVI1:0.912564458502;NKX2-1,4:0.890868498022;HOXA9_MEIS1:0.885676629962;EN1,2:0.883886290131;ZNF143:0.804801289463;AHR_ARNT_ARNT2:0.757144307883;FOXP1:0.745271187923;NR6A1:0.740401219812;NKX2-3_NKX2-5:0.697789711335;UFEwm:0.683571373511;HOX{A5,B5}:0.668255860186;IKZF2:0.646151573846;TFDP1:0.614001443768;NFY{A,B,C}:0.577184443767;AIRE:0.542045362406;XBP1:0.538998092064;TAL1_TCF{3,4,12}:0.474022825737;bHLH_family:0.466208641949;ZIC1..3:0.456811107487;GTF2A1,2:0.429041611828;SOX17:0.421021722465;TEAD1:0.411348235294;MYBL2:0.37896600512;ZNF384:0.373970944797;E2F1..5:0.367659297558;STAT5{A,B}:0.348622006507;ZBTB16:0.348162410453;GFI1B:0.31394103943;BACH2:0.295900869882;VSX1,2:0.290406222336;PAX3,7:0.267355257357;TEF:0.247137018916;SRF:0.228824120434;NFIX:0.204514941537;MYB:0.198934967176;IKZF1:0.196797540606;TFAP2B:0.186816095795;STAT1,3:0.18510673459;STAT2,4,6:0.179584477408;MTF1:0.169589691098;NKX3-2:0.159323270043;ONECUT1,2:0.155465305351;FOS_FOS{B,L1}_JUN{B,D}:0.15409575551;ZNF148:0.150566071416;ADNP_IRX_SIX_ZHX:0.144863949068;POU5F1:0.140248389203;NRF1:0.13799645858;ZFP161:0.125467281904;NFE2:0.123184225989;HIC1:0.112603687697;PAX5:0.111684340752;NFKB1_REL_RELA:0.111237604275;PRDM1:0.104435255611;POU1F1:0.0995697972482;SP1:0.0957454880951;XCPE1{core}:0.0955000385464;RXR{A,B,G}:0.0760800172933;ZNF238:0.0664123261601;HLF:0.0619028439462;BREu{core}:0.0574504093383;MTE{core}:0.0397873521098;GLI1..3:0.0393361546561;ZNF423:0.0129317838006;FOSL2:0.00129498585933;AR:-0.0099037373975;RFX1:-0.0138856418958;MYFfamily:-0.0394794453042;NANOG{mouse}:-0.0456447906652;HES1:-0.0461639554314;HBP1_HMGB_SSRP1_UBTF:-0.0468349425543;FOXA2:-0.0474038992162;ATF4:-0.0569571037081;RUNX1..3:-0.0652457293307;FOXD3:-0.0868037922847;RXRA_VDR{dimer}:-0.0882840786422;ALX4:-0.0970632489954;POU6F1:-0.114065729606;MZF1:-0.114891096731;MAFB:-0.11888244363;ATF5_CREB3:-0.14307085513;HMGA1,2:-0.145812757415;NFE2L2:-0.145893741409;EBF1:-0.150636887954;NFE2L1:-0.160064256861;MED-1{core}:-0.16679331626;LHX3,4:-0.181719784752;ALX1:-0.186038022163;KLF4:-0.194804291606;EGR1..3:-0.20645981173;CREB1:-0.211427032436;TBP:-0.214296463297;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.21897202067;PAX8:-0.224300472012;JUN:-0.227840805517;SMAD1..7,9:-0.234327379091;HOX{A6,A7,B6,B7}:-0.249612971825;GTF2I:-0.258134222478;TLX1..3_NFIC{dimer}:-0.261326515825;SOX{8,9,10}:-0.262805492311;ARID5B:-0.26411569438;NR1H4:-0.274798394491;TFCP2:-0.289969054771;PAX2:-0.292819368077;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.293283454368;TBX4,5:-0.294853288034;FOXM1:-0.299512267589;ZBTB6:-0.299924686646;HNF1A:-0.3011050472;NKX6-1,2:-0.301509468453;NR5A1,2:-0.302165383287;MEF2{A,B,C,D}:-0.302233642656;MAZ:-0.312342755827;FOXN1:-0.322413838943;CDX1,2,4:-0.325346750766;HSF1,2:-0.347985443827;ELF1,2,4:-0.371426221681;HAND1,2:-0.371470405438;PATZ1:-0.378466232287;ATF2:-0.383308133811;CUX2:-0.385753906749;REST:-0.398735893011;CEBPA,B_DDIT3:-0.412065487529;SPI1:-0.436415643078;PDX1:-0.46078408471;IRF1,2:-0.46453613273;FOXL1:-0.477195540168;GATA6:-0.480057245366;EP300:-0.481560740832;PRRX1,2:-0.490479879044;TP53:-0.51034829983;RORA:-0.518178896485;TFAP4:-0.522339790613;POU2F1..3:-0.527888324206;LMO2:-0.534864957282;RBPJ:-0.537314380142;GCM1,2:-0.5396380816;CDC5L:-0.541845405104;ETS1,2:-0.542479588153;TFAP2{A,C}:-0.561273849073;DMAP1_NCOR{1,2}_SMARC:-0.580087289648;ZEB1:-0.583889461747;OCT4_SOX2{dimer}:-0.594210466867;YY1:-0.599065132455;LEF1_TCF7_TCF7L1,2:-0.60468004985;NFATC1..3:-0.630588645623;SPZ1:-0.633526165434;IRF7:-0.642506058466;NANOG:-0.651428309387;TLX2:-0.659555011179;CRX:-0.70596732794;FOX{F1,F2,J1}:-0.706189254743;HNF4A_NR2F1,2:-0.707137015473;SPIB:-0.712123455775;SOX2:-0.718469993585;GATA4:-0.720928369364;RFX2..5_RFXANK_RFXAP:-0.75423201534;NFIL3:-0.758834635552;NHLH1,2:-0.79422762111;PAX1,9:-0.820126115539;NR3C1:-0.823071393896;BPTF:-0.83630861948;SNAI1..3:-0.846196038555;SREBF1,2:-0.856470415385;T:-0.879713094017;FOXP3:-0.88591068494;PAX6:-0.886869467986;RREB1:-0.895969968298;FOX{D1,D2}:-0.909122260751;HMX1:-0.918148436862;MYOD1:-0.918717667066;SOX5:-0.946873426706;GZF1:-0.977263992096;NKX2-2,8:-0.994047540189;ESRRA:-1.00370527681;ESR1:-1.00740918957;PBX1:-1.04901816725;TGIF1:-1.05054521454;FOXQ1:-1.19773283518;FOXO1,3,4:-1.40869839092;FOX{I1,J2}:-2.60214621306
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10732-110B3;search_select_hide=table117:FF:10732-110B3
}}
}}

Latest revision as of 15:02, 3 June 2020

Name:pagetoid sarcoma cell line:Hs 925.T
Species:Human (Homo sapiens)
Library ID:CNhs11856
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexmale
age58
cell typeunclassifiable
cell lineHs 925.T
companyATCC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005548
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11856 CAGE DRX007979 DRR008851
Accession ID Hg19

Library idBAMCTSS
CNhs11856 DRZ000276 DRZ001661
Accession ID Hg38

Library idBAMCTSS
CNhs11856 DRZ011626 DRZ013011
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.398
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.318
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0927
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.262
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.417
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.213
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.303
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.0798
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0477
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0348
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0377
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.306
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.147
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0798
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.744
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.497
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.48
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.872
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11856

Jaspar motifP-value
MA0002.20.711
MA0003.10.0633
MA0004.10.464
MA0006.10.379
MA0007.10.657
MA0009.10.247
MA0014.10.712
MA0017.10.00785
MA0018.20.337
MA0019.10.873
MA0024.10.373
MA0025.10.622
MA0027.10.887
MA0028.16.60868e-5
MA0029.10.141
MA0030.10.00653
MA0031.10.109
MA0035.20.134
MA0038.10.00121
MA0039.20.79
MA0040.10.0925
MA0041.10.229
MA0042.10.273
MA0043.10.516
MA0046.10.00356
MA0047.20.262
MA0048.10.0157
MA0050.10.0303
MA0051.10.266
MA0052.10.226
MA0055.10.0682
MA0057.10.508
MA0058.10.803
MA0059.10.173
MA0060.12.02139e-12
MA0061.10.475
MA0062.28.90253e-4
MA0065.20.0375
MA0066.10.438
MA0067.10.358
MA0068.10.28
MA0069.10.0323
MA0070.10.856
MA0071.10.975
MA0072.10.621
MA0073.10.354
MA0074.10.669
MA0076.13.94537e-6
MA0077.10.821
MA0078.10.368
MA0079.20.427
MA0080.22.00247e-9
MA0081.10.0507
MA0083.10.143
MA0084.10.448
MA0087.10.147
MA0088.10.135
MA0090.10.371
MA0091.10.0167
MA0092.10.654
MA0093.10.425
MA0099.20.00881
MA0100.10.14
MA0101.10.445
MA0102.20.0155
MA0103.10.00932
MA0104.20.0887
MA0105.10.224
MA0106.10.986
MA0107.10.995
MA0108.20.946
MA0111.10.464
MA0112.20.0772
MA0113.10.328
MA0114.10.0212
MA0115.10.522
MA0116.10.0573
MA0117.10.29
MA0119.10.612
MA0122.10.834
MA0124.10.893
MA0125.10.122
MA0131.10.122
MA0135.10.0215
MA0136.15.16327e-8
MA0137.20.703
MA0138.20.0346
MA0139.10.311
MA0140.10.82
MA0141.10.507
MA0142.10.151
MA0143.10.292
MA0144.10.862
MA0145.10.156
MA0146.10.104
MA0147.10.0211
MA0148.10.6
MA0149.10.302
MA0150.10.498
MA0152.10.333
MA0153.10.319
MA0154.10.00313
MA0155.10.175
MA0156.10.0437
MA0157.10.289
MA0159.10.552
MA0160.10.171
MA0162.10.483
MA0163.10.559
MA0164.10.236
MA0258.10.263
MA0259.19.03572e-4



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11856

Novel motifP-value
10.39
100.805
1000.298
1010.4
1020.649
1030.671
1040.725
1050.0401
1060.0959
1070.665
1080.221
1090.442
110.822
1100.963
1110.204
1120.468
1130.105
1140.997
1150.669
1160.542
1170.988
1180.418
1190.761
120.258
1200.989
1210.607
1220.383
1230.34
1240.272
1250.348
1260.621
1270.619
1280.282
1290.398
130.801
1300.276
1310.0524
1320.605
1330.658
1340.772
1350.00784
1360.0878
1370.0969
1380.691
1390.945
140.0818
1400.0665
1410.135
1420.757
1430.296
1440.698
1450.964
1460.286
1470.446
1480.14
1490.228
150.983
1500.238
1510.93
1520.182
1530.908
1540.249
1550.427
1560.998
1570.715
1580.204
1590.108
160.696
1600.155
1610.745
1620.315
1630.852
1640.93
1650.464
1660.626
1670.305
1680.193
1690.0394
170.486
180.454
190.285
20.7
200.169
210.542
220.0341
230.558
240.623
250.51
260.42
270.0213
280.844
290.347
30.563
300.37
310.656
326.28583e-4
330.557
340.195
350.772
360.834
370.548
380.512
390.538
40.182
400.735
410.0434
420.776
430.254
440.694
450.392
460.916
470.978
480.665
490.628
50.176
500.877
510.548
520.154
530.714
540.899
550.666
560.851
570.999
580.195
590.362
60.344
600.277
610.858
620.367
630.886
640.703
650.422
666.48234e-5
670.091
680.949
690.817
70.121
700.241
710.821
720.143
730.396
740.914
750.432
760.762
770.563
780.589
790.515
80.998
800.0225
810.657
820.472
830.471
840.818
850.0316
860.845
870.117
880.636
890.172
90.00704
900.905
910.0917
920.833
930.992
940.759
950.996
960.656
970.416
980.0132
990.418



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11856


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1115 (sarcoma)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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