FF:10609-108F6: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00004998 | ||
| | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004998 | ||
|accession_numbers=CAGE;DRX008010;DRR008882;DRZ000307;DRZ001692;DRZ011657;DRZ013042 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057133;DRR062892;DRZ007968 | |||
| | |||
| | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_disease_facet=DOID:0050686,DOID: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255 | ||
| | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:3119 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0101533 | |||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr12:103351444..103351461,+!p1@ASCL1!2.94!875.73!ASCL1;;chr20:20348740..20348757,+!p1@INSM1!2.29!196.12!INSM1;;chr8:53166899..53166914,-!p3@ST18!2.18!150.50!ST18;;chr1:27240455..27240474,-!p1@NR0B2!2.17!148.15!NR0B2;;chr7:27205136..27205164,-!p1@HOXA9!2.14!137.33!HOXA9;;chr1:201979743..201979762,+!p1@ELF3!2.12!132.16!ELF3;;chr7:27192185..27192209,-!p1@HOXA3!2.08!118.52!HOXA3;;chr3:181429704..181429722,+!p1@SOX2!2.05!110.05!SOX2;;chr2:166326200..166326216,+!p1@CSRNP3!2.00!142.04!CSRNP3;;chr1:201979703..201979721,+!p2@ELF3!1.99!97.83!ELF3;;chr1:214161272..214161322,+!p1@PROX1!1.97!127.46!PROX1;;chr7:27224842..27224872,-!p1@HOXA11!1.92!81.36!HOXA11;;chr15:57511609..57511651,+!p2@TCF12!1.91!131.22!TCF12;;chr7:27224795..27224840,-!p2@HOXA11!1.88!75.25!HOXA11;;chr12:103352277..103352324,+!p2@ASCL1!1.81!63.96!ASCL1;;chr2:176973498..176973524,+!p1@HOXD10!1.81!63.02!HOXD10;;chr7:156803329..156803362,-!p1@MNX1!1.81!63.02!MNX1;;chr8:53162037..53162058,-!p5@ST18!1.81!63.02!ST18;;chr7:27213893..27213954,-!p1@HOXA10!1.80!61.61!HOXA10;;chr20:22564895..22564910,-!p1@FOXA2!1.79!61.14!FOXA2;;chr2:45236540..45236577,-!p1@SIX2!1.73!53.15!SIX2;;chr17:46667594..46667619,-!p1@HOXB3!1.71!50.79!HOXB3;;chr7:27205106..27205134,-!p2@HOXA9!1.67!46.09!HOXA9;;chr18:55102628..55102646,+!p2@ONECUT2!1.63!41.86!ONECUT2;;chr18:55102598..55102623,+!p1@ONECUT2!1.62!40.45!ONECUT2;;chr14:38064429..38064486,-!p1@FOXA1!1.61!39.98!FOXA1;;chr2:239148671..239148686,-!p1@HES6!1.59!133.57!HES6;;chr11:34642612..34642646,+!p1@EHF!1.59!38.10!EHF;;chr2:177001290..177001315,+!p1@HOXD3!1.56!35.27!HOXD3;;chr10:135122906..135122921,+!p4@ZNF511!1.53!32.92!ZNF511;;chr20:22565370..22565388,-!p2@FOXA2!1.53!32.92!FOXA2;;chr3:181429741..181429767,+!p2@SOX2!1.51!31.51!SOX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.51!31.04!HOXC5;;chr7:27196217..27196246,-!p2@HOXA7!1.47!28.22!HOXA7;;chr12:24103844..24103880,-!p3@SOX5!1.44!26.81!SOX5;;chr17:46682321..46682362,-!p1@HOXB6!1.41!24.93!HOXB6;;chr17:46692457..46692484,-!p2@HOXB8!1.41!24.93!HOXB8;;chr17:74137321..74137337,-!p1@FOXJ1!1.41!24.93!FOXJ1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.41!24.46!TFCP2L1;;chr12:24102576..24102623,-!p2@SOX5!1.39!23.52!SOX5;;chr7:97840743..97840786,+!p1@BHLHA15!1.38!23.05!BHLHA15;;chr18:45935720..45935772,-!p1@ZBTB7C!1.36!22.10!ZBTB7C;;chr12:103351813..103351844,+!p4@ASCL1!1.35!21.16!ASCL1;;chr1:214161358..214161377,+!p3@PROX1!1.32!19.75!PROX1;;chr1:214161328..214161348,+!p2@PROX1!1.30!18.81!PROX1;;chr2:176981499..176981522,+!p2@HOXD10!1.30!18.81!HOXD10;;chr7:14026022..14026044,-!p7@ETV1!1.30!18.81!ETV1;;chr7:27213872..27213886,-!p4@HOXA10!1.30!18.81!HOXA10;;chr7:14028743..14028799,-!p3@ETV1!1.29!23.05!ETV1;;chr7:26191809..26191890,+!p1@NFE2L3!1.28!88.42!NFE2L3;;chr11:34645791..34645836,+!p3@EHF!1.28!17.87!EHF;;chr8:60031619..60031676,-!p1@TOX!1.27!37.63!TOX;;chr8:53166916..53166925,-!p10@ST18!1.25!16.93!ST18;;chr16:79634595..79634620,-!p2@MAF!1.22!28.22!MAF;;chr10:135122868..135122893,+!p3@ZNF511!1.22!15.52!ZNF511;;chr2:177053386..177053402,+!p1@HOXD1!1.22!15.52!HOXD1;;chr12:103351694..103351704,+!p6@ASCL1!1.21!15.05!ASCL1;;chr12:103352326..103352351,+!p3@ASCL1!1.19!14.58!ASCL1;;chr20:22565185..22565223,-!p3@FOXA2!1.19!14.58!FOXA2;;chr19:24097675..24097699,+!p1@ZNF726!1.15!43.27!ZNF726;;chr10:48355030..48355090,+!p1@ZNF488!1.15!16.93!ZNF488;;chr6:21593973..21593988,+!p1@SOX4!1.14!456.21!SOX4;;chr1:209979467..209979494,-!p1@IRF6!1.12!13.64!IRF6;;chr8:53162019..53162028,-!p12@ST18!1.12!12.23!ST18;;chr17:46675558..46675577,-!p2@HOXB6!1.12!12.23!HOXB6;;chr1:10754477..10754517,-!p1@CASZ1!1.11!19.75!CASZ1;;chr19:49139477..49139552,-!p4@DBP!1.11!15.05!DBP;;chr8:60031682..60031710,-!p2@TOX!1.10!18.81!TOX;;chr20:51588873..51588953,+!p1@TSHZ2!1.10!15.52!TSHZ2;;chr16:79634624..79634642,-!p1@MAF!1.09!45.15!MAF;;chr19:21512115..21512135,-!p3@ZNF708!1.09!23.05!ZNF708;;chr17:46671108..46671147,-!p1@HOXB5!1.09!11.29!HOXB5;;chr2:71127699..71127744,+!p1@VAX2!1.08!23.05!VAX2;;chr20:50159198..50159299,-!p1@NFATC2!1.08!15.99!NFATC2;;chr6:21597765..21597779,+!p2@SOX4!1.07!87.48!SOX4;;chr19:33865009..33865090,+!p3@CEBPG!1.07!14.58!CEBPG;;chr1:27240361..27240377,-!p2@NR0B2!1.07!10.82!NR0B2;;chr2:45236579..45236596,-!p2@SIX2!1.07!10.82!SIX2;;chr1:204042233..204042249,+!p1@SOX13!1.05!64.90!SOX13;;chr1:41827095..41827155,+!p1@FOXO6!1.05!14.11!FOXO6;;chr20:62795834..62795878,+!p2@MYT1!1.05!10.35!MYT1;;chr8:80679993..80680011,-!p1@HEY1!1.04!14.58!HEY1;;chr8:53161967..53161974,-!p11@ST18!1.04!9.88!ST18;;chr2:176994408..176994492,+!p1@HOXD8!1.04!9.88!HOXD8;;chr19:24216213..24216314,+!p1@ZNF254!1.03!172.61!ZNF254;;chr7:64838786..64838809,+!p2@ZNF92!1.03!56.44!ZNF92;;chr13:73633131..73633149,+!p1@KLF5!1.02!102.53!KLF5;;chr16:79633894..79633954,-!p3@MAF!1.02!18.34!MAF;;chr9:110250697..110250738,-!p2@KLF4!1.02!11.29!KLF4;;chr8:93107451..93107468,-!p2@RUNX1T1!1.02!9.41!RUNX1T1;;chr17:46690839..46690884,-!p1@HOXB8!1.02!9.41!HOXB8;;chr3:18480217..18480239,-!p3@SATB1!1.02!9.41!SATB1;;chr20:32274179..32274213,-!p1@E2F1!1.01!63.02!E2F1;;chr19:22034809..22034878,-!p2@ZNF43!1.01!33.39!ZNF43;;chr7:64023410..64023428,-!p2@ZNF680!1.01!14.58!ZNF680;;chr6:135502501..135502546,+!p1@MYB!1.00!10.82!MYB;;chr17:46667561..46667572,-!p4@HOXB3!1.00!8.94!HOXB3;;chr20:62795799..62795819,+!p1@MYT1!1.00!8.94!MYT1;;chr2:157189180..157189290,-!p1@NR4A2!0.99!47.03!NR4A2;;chr9:3525727..3525828,-!p2@RFX3!0.99!23.05!RFX3;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.98!18.81!ZNF395;;chr19:24097706..24097731,+!p2@ZNF726!0.98!16.46!ZNF726;;chr7:15726296..15726315,-!p1@MEOX2!0.98!8.47!MEOX2;;chr2:176969228..176969260,+!p1@HOXD11!0.98!8.47!HOXD11;;chr21:47063625..47063658,+!p1@PCBP3!0.97!37.63!PCBP3;;chr19:23941647..23941672,-!p2@ZNF681!0.97!14.11!ZNF681;;chr9:3525867..3525902,-!p3@RFX3!0.95!28.22!RFX3;;chr7:86782094..86782108,+!p5@DMTF1!0.95!13.17!DMTF1;;chr3:18486354..18486377,-!p2@SATB1!0.95!9.88!SATB1;;chr7:15726243..15726293,-!p2@MEOX2!0.95!8.00!MEOX2;;chr7:96654133..96654150,-!p1@DLX5!0.95!8.00!DLX5;;chr8:60031762..60031803,-!p3@TOX!0.94!11.29!TOX;;chr19:24269981..24270007,+!p2@ZNF254!0.93!49.85!ZNF254;;chr1:23857325..23857416,-!p2@E2F2!0.93!8.94!E2F2;;chr7:99680193..99680204,-!p2@ZNF3!0.93!7.53!ZNF3;;chr2:176994919..176994931,+!p2@HOXD8!0.93!7.53!HOXD8;;chr18:55102806..55102847,+!p3@ONECUT2!0.93!7.53!ONECUT2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.92!43.27!ZNF10;;chr8:60031809..60031835,-!p4@TOX!0.92!9.41!TOX;;chr9:110252035..110252057,-!p1@KLF4!0.91!118.05!KLF4;;chr10:77161533..77161546,-!p2@ZNF503!0.91!29.63!ZNF503;;chr20:32274150..32274166,-!p2@E2F1!0.91!13.64!E2F1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.91!7.05!HOXC5;;chr14:37051798..37051831,-!p1@NKX2-8!0.91!7.05!NKX2-8;;chr15:68115672..68115691,+!p1@SKOR1!0.91!7.05!SKOR1;;chr2:176972000..176972025,+!p4@HOXD11!0.91!7.05!HOXD11;;chr2:176987441..176987454,+!p1@HOXD9!0.91!7.05!HOXD9;;chr19:23869970..23869991,-!p1@ZNF675!0.90!27.28!ZNF675;;chr19:52391220..52391251,-!p2@ZNF577!0.90!9.88!ZNF577;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.89!21.16!ZNF321P;;chr7:1570388..1570418,+!p2@MAFK!0.89!15.05!MAFK;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.35!ETV4;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!36.21!CREB3L1;;chr1:8763440..8763460,-!p2@RERE!0.88!34.80!RERE;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.88!6.58!ZNF177;;chr17:46667628..46667642,-!p2@HOXB3!0.88!6.58!HOXB3;;chr7:14026063..14026091,-!p10@ETV1!0.88!6.58!ETV1;;chr2:85981969..85982019,+!p6@ATOH8!0.88!6.58!ATOH8;;chr19:45971246..45971265,+!p1@FOSB!0.87!127.46!FOSB;;chr7:14028488..14028516,-!p2@ETV1!0.87!7.05!ETV1;;chr9:114287433..114287513,+!p1@ZNF483!0.86!16.93!ZNF483;;chr7:21467802..21467840,+!p3@SP4!0.85!13.17!SP4;;chr7:27196196..27196210,-!p5@HOXA7!0.85!6.11!HOXA7;;chr19:9546177..9546224,-!p1@ZNF266!0.84!44.68!ZNF266;;chr22:38597987..38598021,+!p2@MAFF!0.84!38.57!MAFF;;chr19:20748574..20748599,-!p1@ZNF737!0.84!38.10!ZNF737;;chr19:20959098..20959117,+!p1@ZNF66P!0.84!25.87!ZNF66P;;chr10:77161650..77161661,-!p4@ZNF503!0.84!8.47!ZNF503;;chr17:41623259..41623278,-!p7@ETV4!0.84!7.05!ETV4;;chr19:9420483..9420530,-!p@chr19:9420483..9420530,-!0.83!11.76!ZNF699;;chr15:96875657..96875760,+!p14@NR2F2!0.83!9.88!NR2F2;;chr9:110252074..110252079,-!p3@KLF4!0.83!9.88!KLF4;;chr15:71184890..71184909,-!p3@THAP10!0.83!7.53!THAP10;;chr1:114301755..114301796,-!p3@PHTF1!0.83!6.58!PHTF1;;chr6:20402102..20402152,+!p1@E2F3!0.82!24.46!E2F3;;chr19:23941680..23941704,-!p1@ZNF681!0.82!17.40!ZNF681;;chr9:116638634..116638664,+!p2@ZNF618!0.82!11.29!ZNF618;;chr5:2751762..2751784,-!p1@IRX2!0.82!5.64!IRX2;;chr8:76319876..76319926,+!p1@HNF4G!0.82!5.64!HNF4G;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.82!5.64!MEF2B;;chr2:176987463..176987479,+!p2@HOXD9!0.82!5.64!HOXD9;;chr4:149363494..149363543,-!p1@NR3C2!0.82!5.64!NR3C2;;chr1:10856694..10856715,-!p3@CASZ1!0.82!5.64!CASZ1;;chr1:214161619..214161629,+!p5@PROX1!0.82!5.64!PROX1;;chr1:3569072..3569093,+!p1@TP73!0.82!5.64!TP73;;chr19:19976683..19976709,+!p1@ZNF253!0.81!25.87!ZNF253;;chr9:116638565..116638606,+!p1@ZNF618!0.81!24.93!ZNF618;;chr3:32023232..32023273,+!p1@ZNF860!0.81!8.00!ZNF860;;chr15:61521417..61521460,-!p2@RORA!0.80!12.70!RORA;;chr19:37997812..37997866,+!p1@ZNF793!0.80!9.41!ZNF793;;chr19:21512144..21512191,-!p2@ZNF708!0.79!26.34!ZNF708;;chr7:86781916..86781963,+!p2@DMTF1!0.79!23.99!DMTF1;;chr7:138666053..138666146,-!p1@KIAA1549!0.79!23.05!KIAA1549;;chr10:35484053..35484076,+!p1@CREM!0.79!13.64!CREM;;chr17:46675420..46675465,-!p3@HOXB6!0.79!6.11!HOXB6;;chr15:61521462..61521482,-!p4@RORA!0.79!5.17!RORA;;chr15:61521495..61521506,-!p5@RORA!0.79!5.17!RORA;;chr7:27239740..27239759,-!p2@HOXA13!0.79!5.17!HOXA13;;chr8:93107696..93107716,-!p8@RUNX1T1!0.79!5.17!RUNX1T1;;chr1:214161428..214161437,+!p6@PROX1!0.79!5.17!PROX1;;chr2:200320768..200320800,-!p4@SATB2!0.79!5.17!SATB2;;chr13:79177703..79177729,-!p2@POU4F1!0.79!5.17!POU4F1;;chrX:129244454..129244488,-!p1@ELF4!0.78!39.98!ELF4;;chr3:141087393..141087426,+!p3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| |||
|fonse_cell_line=FF:0101120,FF:0101533 | |fonse_cell_line=FF:0101120,FF:0101533 | ||
|fonse_cell_line_closure=FF:0101120,FF:0101533 | |fonse_cell_line_closure=FF:0101120,FF:0101533 | ||
Line 66: | Line 41: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|is_a=EFO:0002091;;FF: | |hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg19.nobarcode.bam | ||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10609-108F6 | |||
|is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0101533 | |||
|is_obsolete= | |||
|library_id=CNhs11734 | |||
|library_id_phase_based=2:CNhs11734 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10609 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10609 | |||
|name=small-cell gastrointestinal carcinoma cell line:ECC4 | |||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
|part_of= | |part_of= | ||
|profile_cagescan=,,, | |||
|profile_hcage=CNhs11734,LSID819,release009,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0837055330846845,0,0,0,0,0.299265804484432,0,0.250417131875216,0.953641799258654,0,0,0,0,0,0,0,0,0,0,0,0.167411066169369,0,0.228865533702372,0,0,0,0,0,0.72445914797626,0,0,0.623159953120392,0,0,0,0,0,0,0,0,0,0,0,0,0.202903313001985,0.582279748879062,0,0,0,0,0,0,0,0.401845720273725,0,0,0,0,0,0,0.167411066169369,0.190951407374205,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.28794376861681,0,0,0,0,0,0,0,0,0.178951981956076,0,0,0,0,0,0,0.0297080996112887,0.167411066169369,0,0,-0.0482412809441,0.123868753637936,0,0,0,0,0.0693757149316621,0.98693688367678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535674918449919,0.167411066169369,0,0,0.224339649027135,0.53022131969657,0,0,0.382188544050799,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0693757149316621,0,0,0,0,0,0.167411066169369,0.167411066169369,0,0,0,0,0.135009668765235,0.0994479222955785,0.203752268976205,0.647015624764082,0.0837055330846845,0.167411066169369,0.144503074239089,0,0,0,0.0363045225891136,0.28794376861681,0,0,0.167411066169369,0,1.24433607560684,0,1.11510483984855,0.48223414646493,0,0,0,0.137745151057176,-0.305472230898407,0,-0.0905525280648255,0.219599507539442,0,0,0,0,-0.102829603164956,0,0.0465315823756279,-0.0827201683234173,0.160576955947993,-0.256455297554872,0.0399914277260651,0,0,0,-0.656227782624418,0.584075407602395,0,0,-0.121779851751874,0.196708652888968,0,0,-0.391044581551635,0,-0.223533595889514,-0.165162517297569,0,0.116637266363219,0,0,0,0,0,0,0,0,0.459583834570818,0.227677417393089,0,-0.0574934668214365,0.350849891049244,0,0.525250430081307,0.997212834262706,0.0362486511778342,-0.233424214958044,0,0.0181511704002683,-0.373286155956567,-0.269631976484861,0.0896275430956205,0.744384333678092,0,-0.302389727009913,-0.140868794717414,-0.521950428039156,0.0980799473912504,-0.147401849371139,-0.189981719549847,0,-0.265282933041009,-0.0301560862147573,-0.0430048686270874,-0.630870557582038,0,-0.351484865220249,0.22936835900088,0,0.167411066169369,-0.0775089264793031,-0.0464050310530335,0,0.204483592343265,-0.0305308799059555,0.182350487168892,0.611354427818863,-0.470292461742264,0.191845207868409,0.323845467025919,0.716770334366786,-0.457436452896595,-0.0133337693016517,-0.158947109863046,-0.0147478910787509,0,0,0.0967657303162309,0.379605284330546,0.0168559094013798,0,-0.196033693194171,-0.0683442610773682,0.0837055330846845,-0.461472618737525,-0.230548186301385,0.677838487728213,-0.0454364793674383,-0.119193396300594,0.167411066169369,0,0,0,0,0.116940553104887,0.216624399869088,-0.232855561555545,0,0.083820039080887,0.0265881561736785,0.125338696596205,0,0.0359789696687294,0,-0.0101303837444823,-0.00469003597942591,0,0.010923125285352,0.257358323174176,-0.164990696339003,-0.0402062613409381,1.33100039114947,-0.0977898511956722,0.197671923037753,-0.0482412809441,-0.206660115911165,0,-0.0881268324752877,-0.0426419382396642,-0.301265001639318,0.93799798184292,0,0.147571791743387,0,-0.388418168512324,0,-0.0294755083642224,0,-0.0894353633793171,-0.080849916902422,0.633228806057064,0.112885539911557,0,-0.0884731351928016,-0.788130937773974,0,0,0,0,0.0170439828347292,0.753758915776386,0.0160269895285001,-0.0552839235945104,0,-0.207800409510595,0.167411066169369,0,-0.0454768657771243,0.289774392316918,0,0.280985074870154,0.445677395070459,0.450664268088561,-0.115971073434934,0.167411066169369,0,-0.645700337992725,0,0,1.04930477037701,0,0.725870271379915,-0.253326341486756,0.0440494315116517,0.96590967444963,0,0,0.282056068605642,0,0.118172416440706,0,0,-0.249881296598824,0,0,0,0,0.076667669226032,0,0,0,0,0,0,0,0.0580328510374464,-0.066889561599638,0,0.210452353269561,0,0,0,0,0,0,0,0,-0.959648756239617,0.11643977733531,-0.12301741567642,0,0,0,0,-0.215723402553475,0.178951981956076,0,0.327721128073186,0,0,0,0.167411066169369,-0.0861409897892114,0,0,0.0837055330846845,0.0837055330846845,-0.057730457053664,0.106975325846687,0,0,0,1.59168522330276,0,0,0,0,-0.221884131898317,0,0,0,0,-0.246989089326796,0.300606664503958,0,-0.208824517387675,-0.781242773044935,-0.220152741237281,0,0,0.120841412260912,0,0,-0.403262239053189,0.0734145966327039,0.382188544050799,0,0,0,0,0,0,0,0.576216254887798,0,0,0,0,0,0,0,0,0,0,0,-0.0144057752218574,0.0751870095108581,0,0,0,0,0,0,0,0.382491076270155,0.290919487008072,0,0,0,0,0,0.28794376861681,0,0,-0.0892373956124428,0,0,0.28794376861681,0,0,0.190951407374205,0,0,0,0.167411066169369,1.382033168436,0,0,0.247888297887793,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33626474853537,0.397360228319113,0,0,0,0,0,0,0,0.250417131875216,0,0.525250430081307,0,0,-0.113884373708977,0,0,0,0.183147383827654,0,0.299265804484432,0,0,0,0.0837055330846845,0,0.363624427197231,0,0,0,0,0,0,0,0,0,0,0,0.143971884308405,0,0,0,-0.0302011375857685,0,-0.19194055360863,-0.0365669483535336,0,0,-0.232628352633041,0,0,0,0,0,0,0.112631460279878,0.0134970746107371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167411066169369,0,0,0,0,0,0,0.0608587489035085,0,0,0,0,0,0,0,0.72445914797626,0,0,0.221464640569567,0,0,0,0,0,0,-0.0581849233713004,-0.199514866738463,0.123040667624571,0,0,0,0.0293199606022295,0,0,0,0.167411066169369,-0.0667773874189013,0,0,0,0,0,0,0,0,0.582279748879062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.228865533702372,0,0,0,0,0,0,0,0,0.0837055330846845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28794376861681,0,0.382188544050799,0.262625215040654,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0.28794376861681,0,0,0,0,0,0.167411066169369,0,0,0,0,0,0.74239857597568,0,0,0,0.0748575389597664,0,0,0,0,0,0,0.525250430081307,0,0.582279748879062,0,0,0,0,0,0,0,0,0,0,0,0.167411066169369,0,0,0,0,0,0,0,0.28794376861681,0,0,0,0,0,0,0,0.879923643066855,0,0,0,0.313309889234001,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333966468811745,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0.382188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| |||
|rna_box=108 | |||
|rna_catalog_number= | |||
|rna_concentration=0.40869 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230=1.96 | |||
|rna_od260/280=2.04 | |||
|rna_position=F6 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=108F6 | |||
|rna_weight_ug=19.20843 | |||
|rnaseq_library_id=RDhi10076 | |||
|sample_age=45 | |||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0982 | |||
|sample_cell_line=ECC4 | |||
|sample_cell_lot= | |||
|sample_cell_type=unclassifiable | |||
|sample_collaboration=Yukio Nakamura (RIKEN BRC) | |||
|sample_company=RIKEN Bioresource centre | |||
|sample_description= | |||
|sample_dev_stage= | |||
|sample_disease=small-cell gastrointestinal carcinoma | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=J | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.85972740199431e-240!GO:0043226;organelle;2.75477341251946e-208!GO:0043229;intracellular organelle;9.02258739819697e-208!GO:0043227;membrane-bound organelle;1.69193828285531e-204!GO:0043231;intracellular membrane-bound organelle;1.69193828285531e-204!GO:0005737;cytoplasm;2.15797677174926e-159!GO:0044422;organelle part;4.7083189854547e-140!GO:0044446;intracellular organelle part;4.93271349329424e-138!GO:0044444;cytoplasmic part;1.45667022147052e-120!GO:0044237;cellular metabolic process;6.2291917968986e-89!GO:0044238;primary metabolic process;7.55418395827149e-88!GO:0043170;macromolecule metabolic process;2.05190151445564e-82!GO:0032991;macromolecular complex;1.14066607213388e-81!GO:0005634;nucleus;3.41129828193264e-81!GO:0030529;ribonucleoprotein complex;1.43923188546608e-68!GO:0044428;nuclear part;7.80510507220631e-65!GO:0003723;RNA binding;7.81663179288953e-61!GO:0043233;organelle lumen;1.21513091906592e-60!GO:0031974;membrane-enclosed lumen;1.21513091906592e-60!GO:0005739;mitochondrion;4.31272582917428e-57!GO:0031090;organelle membrane;3.03812610012448e-56!GO:0043283;biopolymer metabolic process;7.30233576926166e-54!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.23464973754011e-52!GO:0010467;gene expression;7.24172342901829e-50!GO:0005515;protein binding;1.1442490630758e-49!GO:0006396;RNA processing;4.96673734076666e-45!GO:0015031;protein transport;1.37827540556573e-43!GO:0033036;macromolecule localization;1.41147531807359e-42!GO:0043234;protein complex;3.52067680913603e-42!GO:0008104;protein localization;1.54477746862068e-39!GO:0045184;establishment of protein localization;3.53772983217018e-39!GO:0005840;ribosome;2.85559376086454e-38!GO:0044429;mitochondrial part;4.38660166483406e-38!GO:0031967;organelle envelope;1.2534985093322e-37!GO:0019538;protein metabolic process;2.58579359554263e-37!GO:0031975;envelope;2.75182371330157e-37!GO:0016071;mRNA metabolic process;1.61130663421846e-36!GO:0031981;nuclear lumen;6.24140162613967e-36!GO:0006412;translation;6.28739270653289e-35!GO:0003676;nucleic acid binding;5.87668622782956e-34!GO:0016043;cellular component organization and biogenesis;1.14279698905534e-33!GO:0003735;structural constituent of ribosome;2.15976402948585e-33!GO:0044267;cellular protein metabolic process;7.36249355969234e-33!GO:0008380;RNA splicing;1.31314969190671e-32!GO:0006397;mRNA processing;6.13781658080027e-32!GO:0044260;cellular macromolecule metabolic process;6.56260363854731e-32!GO:0033279;ribosomal subunit;7.30390121257347e-32!GO:0009058;biosynthetic process;1.30619897880802e-31!GO:0046907;intracellular transport;3.62704945713311e-30!GO:0009059;macromolecule biosynthetic process;4.0651937789586e-30!GO:0005829;cytosol;9.91858469370123e-29!GO:0012505;endomembrane system;1.35268873962825e-28!GO:0044249;cellular biosynthetic process;3.22154398059752e-28!GO:0016070;RNA metabolic process;3.8488578890939e-28!GO:0065003;macromolecular complex assembly;4.63838225935917e-27!GO:0006886;intracellular protein transport;7.28289170437809e-27!GO:0006259;DNA metabolic process;1.37928360936485e-26!GO:0043228;non-membrane-bound organelle;4.56226784134337e-26!GO:0043232;intracellular non-membrane-bound organelle;4.56226784134337e-26!GO:0006996;organelle organization and biogenesis;1.64552163505217e-24!GO:0005740;mitochondrial envelope;2.47296815191713e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.07107303486965e-24!GO:0051649;establishment of cellular localization;6.85775786728056e-24!GO:0019866;organelle inner membrane;9.86420557147745e-24!GO:0051641;cellular localization;3.83228659507656e-23!GO:0022607;cellular component assembly;4.94799681942042e-23!GO:0006119;oxidative phosphorylation;1.30073231104227e-22!GO:0031966;mitochondrial membrane;1.49093503505368e-22!GO:0005681;spliceosome;2.33853719729708e-22!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.16516858342582e-21!GO:0005743;mitochondrial inner membrane;1.9545447671502e-21!GO:0006457;protein folding;3.89271394300892e-21!GO:0005654;nucleoplasm;3.94604115124046e-21!GO:0000166;nucleotide binding;2.53333076894857e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;9.41330169676399e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.81397061972929e-19!GO:0016462;pyrophosphatase activity;9.81397061972929e-19!GO:0017111;nucleoside-triphosphatase activity;2.5848900879319e-18!GO:0044455;mitochondrial membrane part;2.83172893271085e-18!GO:0006974;response to DNA damage stimulus;8.98572433011433e-18!GO:0044445;cytosolic part;1.39296719769349e-17!GO:0031980;mitochondrial lumen;1.43179058124141e-17!GO:0005759;mitochondrial matrix;1.43179058124141e-17!GO:0044451;nucleoplasm part;2.88835061245122e-17!GO:0015935;small ribosomal subunit;6.93183992184796e-17!GO:0044432;endoplasmic reticulum part;1.29567803568512e-16!GO:0005794;Golgi apparatus;1.43114664216635e-16!GO:0051082;unfolded protein binding;1.58517219817867e-16!GO:0006512;ubiquitin cycle;1.88400976350651e-16!GO:0015934;large ribosomal subunit;4.55375875807875e-16!GO:0005783;endoplasmic reticulum;5.44581550890913e-16!GO:0005746;mitochondrial respiratory chain;5.93948469899152e-16!GO:0016874;ligase activity;8.76438176582857e-16!GO:0016192;vesicle-mediated transport;1.14736110939301e-15!GO:0022618;protein-RNA complex assembly;2.02335883127057e-15!GO:0050136;NADH dehydrogenase (quinone) activity;9.84533555138119e-15!GO:0003954;NADH dehydrogenase activity;9.84533555138119e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.84533555138119e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.0422252545412e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.31501554357031e-14!GO:0005730;nucleolus;3.64719628349373e-14!GO:0005635;nuclear envelope;3.83129447318968e-14!GO:0006281;DNA repair;4.43746135553554e-14!GO:0008135;translation factor activity, nucleic acid binding;8.79474754997458e-14!GO:0032553;ribonucleotide binding;1.01596430765427e-13!GO:0032555;purine ribonucleotide binding;1.01596430765427e-13!GO:0016887;ATPase activity;1.17025962124713e-13!GO:0048770;pigment granule;1.76278731272632e-13!GO:0042470;melanosome;1.76278731272632e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.83905948293746e-13!GO:0007049;cell cycle;2.35026443347445e-13!GO:0017076;purine nucleotide binding;2.39391984089724e-13!GO:0006260;DNA replication;2.39692729151127e-13!GO:0005789;endoplasmic reticulum membrane;3.91731201758962e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;5.13455120901128e-13!GO:0031965;nuclear membrane;5.1795534158011e-13!GO:0044265;cellular macromolecule catabolic process;5.50746604869382e-13!GO:0030964;NADH dehydrogenase complex (quinone);7.83495101197795e-13!GO:0045271;respiratory chain complex I;7.83495101197795e-13!GO:0005747;mitochondrial respiratory chain complex I;7.83495101197795e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.04628179148878e-13!GO:0042773;ATP synthesis coupled electron transport;8.04628179148878e-13!GO:0019941;modification-dependent protein catabolic process;8.19860184580825e-13!GO:0043632;modification-dependent macromolecule catabolic process;8.19860184580825e-13!GO:0042623;ATPase activity, coupled;9.92654235238425e-13!GO:0044257;cellular protein catabolic process;1.24523396052623e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.63386183177978e-12!GO:0005761;mitochondrial ribosome;1.76866382130593e-12!GO:0000313;organellar ribosome;1.76866382130593e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.83008981346736e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.96404120117502e-12!GO:0051186;cofactor metabolic process;2.04485974667377e-12!GO:0044453;nuclear membrane part;2.17396400704396e-12!GO:0009719;response to endogenous stimulus;3.50740606572721e-12!GO:0031982;vesicle;5.07652980721593e-12!GO:0016604;nuclear body;6.54431759978351e-12!GO:0008134;transcription factor binding;7.69576245570884e-12!GO:0005524;ATP binding;8.58569660926708e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.0802351933965e-12!GO:0043285;biopolymer catabolic process;9.09121732247601e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;9.09121732247601e-12!GO:0000375;RNA splicing, via transesterification reactions;9.09121732247601e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.09121732247601e-12!GO:0031410;cytoplasmic vesicle;9.62840705947038e-12!GO:0005694;chromosome;1.1401396159225e-11!GO:0043412;biopolymer modification;1.18337593762486e-11!GO:0032559;adenyl ribonucleotide binding;1.23892580935899e-11!GO:0048193;Golgi vesicle transport;1.40727447011094e-11!GO:0030554;adenyl nucleotide binding;3.84897879484275e-11!GO:0044427;chromosomal part;4.81186399277385e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.48612177417888e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.48612177417888e-11!GO:0044431;Golgi apparatus part;5.48612177417888e-11!GO:0006163;purine nucleotide metabolic process;7.54798272941158e-11!GO:0009057;macromolecule catabolic process;9.08323777946041e-11!GO:0009055;electron carrier activity;1.25646787303753e-10!GO:0005643;nuclear pore;1.44933304506229e-10!GO:0031988;membrane-bound vesicle;1.48554681378455e-10!GO:0009259;ribonucleotide metabolic process;1.48554681378455e-10!GO:0006605;protein targeting;2.10906274265551e-10!GO:0016023;cytoplasmic membrane-bound vesicle;2.83246184138727e-10!GO:0006464;protein modification process;2.920245874706e-10!GO:0030163;protein catabolic process;3.240204058984e-10!GO:0044248;cellular catabolic process;3.3807490912633e-10!GO:0003743;translation initiation factor activity;4.18478026854522e-10!GO:0006732;coenzyme metabolic process;5.20226150981833e-10!GO:0009150;purine ribonucleotide metabolic process;5.3780881486225e-10!GO:0065002;intracellular protein transport across a membrane;6.02217306554896e-10!GO:0006403;RNA localization;7.86459892830686e-10!GO:0006164;purine nucleotide biosynthetic process;8.09656305521614e-10!GO:0009199;ribonucleoside triphosphate metabolic process;8.74668677633868e-10!GO:0050657;nucleic acid transport;9.3322754422509e-10!GO:0051236;establishment of RNA localization;9.3322754422509e-10!GO:0050658;RNA transport;9.3322754422509e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.11851532472007e-09!GO:0019829;cation-transporting ATPase activity;1.12575932221099e-09!GO:0009141;nucleoside triphosphate metabolic process;1.39842523029844e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.49644246994059e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.49644246994059e-09!GO:0019222;regulation of metabolic process;1.75060937084366e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.9311632998161e-09!GO:0042254;ribosome biogenesis and assembly;2.07519525001374e-09!GO:0051276;chromosome organization and biogenesis;2.18130429747872e-09!GO:0006446;regulation of translational initiation;2.2335275222386e-09!GO:0009260;ribonucleotide biosynthetic process;2.9428552444547e-09!GO:0015986;ATP synthesis coupled proton transport;2.94883549575464e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.94883549575464e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.94883549575464e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.94883549575464e-09!GO:0016607;nuclear speck;3.49836248047368e-09!GO:0006413;translational initiation;4.6902409271175e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.27190002068166e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.27190002068166e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.57491064583312e-09!GO:0006323;DNA packaging;5.61442935086885e-09!GO:0005793;ER-Golgi intermediate compartment;7.68259794421413e-09!GO:0006461;protein complex assembly;1.03170983368126e-08!GO:0046930;pore complex;1.37083899637583e-08!GO:0046034;ATP metabolic process;1.58765913245732e-08!GO:0008565;protein transporter activity;1.85561426851254e-08!GO:0022402;cell cycle process;1.88851039207591e-08!GO:0006261;DNA-dependent DNA replication;2.03427849166576e-08!GO:0003712;transcription cofactor activity;2.62526582932216e-08!GO:0000785;chromatin;2.66134034650783e-08!GO:0050794;regulation of cellular process;3.12875251515274e-08!GO:0004386;helicase activity;3.48347876512786e-08!GO:0000139;Golgi membrane;4.26322151273984e-08!GO:0006754;ATP biosynthetic process;4.5757672997607e-08!GO:0006753;nucleoside phosphate metabolic process;4.5757672997607e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.90272732931658e-08!GO:0015630;microtubule cytoskeleton;4.90272732931658e-08!GO:0009060;aerobic respiration;5.29580182586765e-08!GO:0015078;hydrogen ion transmembrane transporter activity;5.31910442507924e-08!GO:0006399;tRNA metabolic process;5.32066971444249e-08!GO:0051028;mRNA transport;5.70466394039844e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.39427364697403e-08!GO:0043687;post-translational protein modification;7.45818471690368e-08!GO:0045045;secretory pathway;7.9068593914443e-08!GO:0045333;cellular respiration;8.54610524952584e-08!GO:0006350;transcription;9.55864657171229e-08!GO:0016469;proton-transporting two-sector ATPase complex;1.03416661333619e-07!GO:0003697;single-stranded DNA binding;1.04079222873597e-07!GO:0006913;nucleocytoplasmic transport;1.73204151311469e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.73204151311469e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.73755725033251e-07!GO:0043566;structure-specific DNA binding;1.78244024376876e-07!GO:0031323;regulation of cellular metabolic process;3.0775257075852e-07!GO:0006333;chromatin assembly or disassembly;3.29592009664628e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.70561343443785e-07!GO:0048475;coated membrane;4.05724998143523e-07!GO:0030117;membrane coat;4.05724998143523e-07!GO:0008639;small protein conjugating enzyme activity;4.71542482469962e-07!GO:0051169;nuclear transport;4.97775202208854e-07!GO:0051188;cofactor biosynthetic process;5.23162395243065e-07!GO:0016568;chromatin modification;5.88176147435615e-07!GO:0000278;mitotic cell cycle;6.50113022597157e-07!GO:0004842;ubiquitin-protein ligase activity;9.99575128853899e-07!GO:0032446;protein modification by small protein conjugation;1.0116160999182e-06!GO:0007005;mitochondrion organization and biogenesis;1.07267893958448e-06!GO:0030120;vesicle coat;1.15352736891976e-06!GO:0030662;coated vesicle membrane;1.15352736891976e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.17797772257281e-06!GO:0065004;protein-DNA complex assembly;1.22150583700878e-06!GO:0009108;coenzyme biosynthetic process;1.34627133873509e-06!GO:0008026;ATP-dependent helicase activity;1.35865567151738e-06!GO:0004298;threonine endopeptidase activity;1.48235180902352e-06!GO:0005768;endosome;1.48558155044349e-06!GO:0006752;group transfer coenzyme metabolic process;1.87904692501497e-06!GO:0016567;protein ubiquitination;2.0345712836572e-06!GO:0019787;small conjugating protein ligase activity;2.20243537234716e-06!GO:0005657;replication fork;2.595480815947e-06!GO:0000245;spliceosome assembly;2.84356646210677e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.91477454537899e-06!GO:0006099;tricarboxylic acid cycle;2.92236336236851e-06!GO:0046356;acetyl-CoA catabolic process;2.92236336236851e-06!GO:0006366;transcription from RNA polymerase II promoter;3.30913155590236e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.38449148827889e-06!GO:0009117;nucleotide metabolic process;3.40687679444591e-06!GO:0010468;regulation of gene expression;3.44709746260485e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.68263274994742e-06!GO:0032774;RNA biosynthetic process;3.78409412583161e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.78154229430094e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.78154229430094e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.78154229430094e-06!GO:0006351;transcription, DNA-dependent;4.82052574368379e-06!GO:0016072;rRNA metabolic process;5.16952056733634e-06!GO:0006364;rRNA processing;6.0903466395276e-06!GO:0012501;programmed cell death;6.0903466395276e-06!GO:0016881;acid-amino acid ligase activity;6.0980998860011e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.16644420294116e-06!GO:0015399;primary active transmembrane transporter activity;6.16644420294116e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.74749877983187e-06!GO:0006818;hydrogen transport;7.16313836681731e-06!GO:0006915;apoptosis;7.21294149210905e-06!GO:0016779;nucleotidyltransferase activity;7.26448452827224e-06!GO:0006084;acetyl-CoA metabolic process;7.61379971604103e-06!GO:0008654;phospholipid biosynthetic process;8.15789311911465e-06!GO:0015992;proton transport;9.5719786181347e-06!GO:0005798;Golgi-associated vesicle;9.67999950280474e-06!GO:0051187;cofactor catabolic process;9.91491871719613e-06!GO:0045454;cell redox homeostasis;1.02336264323382e-05!GO:0045259;proton-transporting ATP synthase complex;1.02944637031903e-05!GO:0043038;amino acid activation;1.07463871743249e-05!GO:0006418;tRNA aminoacylation for protein translation;1.07463871743249e-05!GO:0043039;tRNA aminoacylation;1.07463871743249e-05!GO:0022403;cell cycle phase;1.21910622068128e-05!GO:0009056;catabolic process;1.77919713947255e-05!GO:0051789;response to protein stimulus;1.81939601511148e-05!GO:0006986;response to unfolded protein;1.81939601511148e-05!GO:0006613;cotranslational protein targeting to membrane;1.93686571656042e-05!GO:0009109;coenzyme catabolic process;2.29444326969076e-05!GO:0016564;transcription repressor activity;2.45223077517888e-05!GO:0050789;regulation of biological process;3.05287366580627e-05!GO:0005773;vacuole;3.28931090597452e-05!GO:0045449;regulation of transcription;3.28931090597452e-05!GO:0003899;DNA-directed RNA polymerase activity;3.35902835548558e-05!GO:0008219;cell death;3.50478122509423e-05!GO:0016265;death;3.50478122509423e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.13811068759548e-05!GO:0015631;tubulin binding;4.28111356124309e-05!GO:0016787;hydrolase activity;4.28111356124309e-05!GO:0005874;microtubule;4.38466043950974e-05!GO:0003724;RNA helicase activity;5.21448340797542e-05!GO:0043021;ribonucleoprotein binding;5.88300443135931e-05!GO:0017038;protein import;7.63563877741518e-05!GO:0032940;secretion by cell;8.26580463648498e-05!GO:0003714;transcription corepressor activity;8.74167925941288e-05!GO:0005762;mitochondrial large ribosomal subunit;8.92912299937336e-05!GO:0000315;organellar large ribosomal subunit;8.92912299937336e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;9.0188404242611e-05!GO:0006793;phosphorus metabolic process;9.12754056224574e-05!GO:0006796;phosphate metabolic process;9.12754056224574e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;9.32850114236051e-05!GO:0000314;organellar small ribosomal subunit;9.3562426753389e-05!GO:0005763;mitochondrial small ribosomal subunit;9.3562426753389e-05!GO:0044440;endosomal part;9.70368206083565e-05!GO:0010008;endosome membrane;9.70368206083565e-05!GO:0043492;ATPase activity, coupled to movement of substances;9.74852953789322e-05!GO:0003677;DNA binding;0.000102106262154739!GO:0019899;enzyme binding;0.00010385512344195!GO:0051168;nuclear export;0.000113807943557!GO:0005788;endoplasmic reticulum lumen;0.000117960502413314!GO:0016740;transferase activity;0.000126867815858951!GO:0031497;chromatin assembly;0.00014702515353992!GO:0033116;ER-Golgi intermediate compartment membrane;0.000148371432244215!GO:0006334;nucleosome assembly;0.00015220498207791!GO:0046474;glycerophospholipid biosynthetic process;0.000160478730562048!GO:0006355;regulation of transcription, DNA-dependent;0.000166818522753326!GO:0043623;cellular protein complex assembly;0.000167060238798059!GO:0004576;oligosaccharyl transferase activity;0.000181558349970319!GO:0051726;regulation of cell cycle;0.000182032306189148!GO:0008250;oligosaccharyl transferase complex;0.000216165418298538!GO:0000151;ubiquitin ligase complex;0.000238586715787171!GO:0030880;RNA polymerase complex;0.000241190188260837!GO:0000074;regulation of progression through cell cycle;0.000260437009242462!GO:0016363;nuclear matrix;0.000264882238693129!GO:0000087;M phase of mitotic cell cycle;0.000270456779271596!GO:0051246;regulation of protein metabolic process;0.000310949220146607!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000311453077657024!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000317716304725501!GO:0031324;negative regulation of cellular metabolic process;0.000317716304725501!GO:0046489;phosphoinositide biosynthetic process;0.000324485295718689!GO:0006612;protein targeting to membrane;0.00033010720449756!GO:0009892;negative regulation of metabolic process;0.000334346137341383!GO:0007067;mitosis;0.000362623066981011!GO:0043069;negative regulation of programmed cell death;0.000411698099302097!GO:0046467;membrane lipid biosynthetic process;0.000433531046035975!GO:0009165;nucleotide biosynthetic process;0.000456751281534685!GO:0030867;rough endoplasmic reticulum membrane;0.000459556472432922!GO:0005770;late endosome;0.000467158987368241!GO:0048471;perinuclear region of cytoplasm;0.000488248739213923!GO:0031072;heat shock protein binding;0.000503915240981589!GO:0005525;GTP binding;0.000506761616583964!GO:0042981;regulation of apoptosis;0.00051934093779772!GO:0008186;RNA-dependent ATPase activity;0.000523489408343134!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000538187438662888!GO:0000428;DNA-directed RNA polymerase complex;0.000538187438662888!GO:0006414;translational elongation;0.000538187438662888!GO:0016859;cis-trans isomerase activity;0.000547860495391565!GO:0051325;interphase;0.000568319264799017!GO:0030176;integral to endoplasmic reticulum membrane;0.000571038559876596!GO:0043067;regulation of programmed cell death;0.000574436646861878!GO:0051052;regulation of DNA metabolic process;0.000591150091254732!GO:0043066;negative regulation of apoptosis;0.000629378740432071!GO:0016310;phosphorylation;0.000630490292410361!GO:0003729;mRNA binding;0.000631052017375294!GO:0051301;cell division;0.00068511910447631!GO:0005813;centrosome;0.000698642039243893!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000715098492203373!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000730370449518891!GO:0006383;transcription from RNA polymerase III promoter;0.000809835509162743!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000838209496293778!GO:0008094;DNA-dependent ATPase activity;0.000840163914069945!GO:0006891;intra-Golgi vesicle-mediated transport;0.000869735988169665!GO:0005885;Arp2/3 protein complex;0.000877384265958601!GO:0016853;isomerase activity;0.000882299866817515!GO:0018196;peptidyl-asparagine modification;0.000899916951931535!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000899916951931535!GO:0031124;mRNA 3'-end processing;0.000939656302100439!GO:0005665;DNA-directed RNA polymerase II, core complex;0.000967684050587054!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00102046568625814!GO:0000323;lytic vacuole;0.00109145396230969!GO:0005764;lysosome;0.00109145396230969!GO:0030658;transport vesicle membrane;0.00113901335269201!GO:0005815;microtubule organizing center;0.00115202902226186!GO:0008017;microtubule binding;0.00127961181878903!GO:0003690;double-stranded DNA binding;0.00128266269034806!GO:0003713;transcription coactivator activity;0.001298925583318!GO:0051329;interphase of mitotic cell cycle;0.0013348796466647!GO:0030133;transport vesicle;0.00137842626581597!GO:0004004;ATP-dependent RNA helicase activity;0.00145629060723004!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00150215696953445!GO:0044433;cytoplasmic vesicle part;0.00151435539508619!GO:0003746;translation elongation factor activity;0.00153164110217871!GO:0012506;vesicle membrane;0.00159092425004915!GO:0007264;small GTPase mediated signal transduction;0.00163154365404899!GO:0003924;GTPase activity;0.00163283319894607!GO:0030135;coated vesicle;0.00173560180343884!GO:0008033;tRNA processing;0.00179370965472498!GO:0005048;signal sequence binding;0.00183464489513743!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00187875440465971!GO:0051920;peroxiredoxin activity;0.00188104959220571!GO:0016491;oxidoreductase activity;0.00202142061681426!GO:0030118;clathrin coat;0.00208032387610987!GO:0005774;vacuolar membrane;0.00210023808891845!GO:0006091;generation of precursor metabolites and energy;0.00210279019385777!GO:0005637;nuclear inner membrane;0.00213970509034822!GO:0006302;double-strand break repair;0.00214034812811941!GO:0000279;M phase;0.00215040971482482!GO:0042802;identical protein binding;0.00232362227126747!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00241930849475837!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00241930849475837!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00241930849475837!GO:0051170;nuclear import;0.00253881712348235!GO:0030660;Golgi-associated vesicle membrane;0.00256021220346075!GO:0006506;GPI anchor biosynthetic process;0.00256021220346075!GO:0030137;COPI-coated vesicle;0.00261161986888717!GO:0005769;early endosome;0.00306353269189149!GO:0005667;transcription factor complex;0.00306353269189149!GO:0015980;energy derivation by oxidation of organic compounds;0.00310146476202123!GO:0006505;GPI anchor metabolic process;0.00312790513172153!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00320362855740593!GO:0031716;calcitonin receptor binding;0.00324053355727564!GO:0001984;vasodilation of artery during baroreceptor response to increased systemic arterial blood pressure;0.00324053355727564!GO:0000049;tRNA binding;0.00338004841856574!GO:0031252;leading edge;0.00346221222034956!GO:0048500;signal recognition particle;0.00348972487625394!GO:0016563;transcription activator activity;0.0035393143146496!GO:0048523;negative regulation of cellular process;0.00356814799974092!GO:0006916;anti-apoptosis;0.0035836410810848!GO:0030659;cytoplasmic vesicle membrane;0.00365086864339315!GO:0000096;sulfur amino acid metabolic process;0.00366458176197409!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0037070300742214!GO:0000059;protein import into nucleus, docking;0.00374290560624258!GO:0016251;general RNA polymerase II transcription factor activity;0.00386052194426677!GO:0051427;hormone receptor binding;0.00392571104588868!GO:0006606;protein import into nucleus;0.00393274060969223!GO:0043433;negative regulation of transcription factor activity;0.00395141791424766!GO:0008637;apoptotic mitochondrial changes;0.00407288825698239!GO:0006611;protein export from nucleus;0.00434831072490347!GO:0016272;prefoldin complex;0.00449383419810405!GO:0006405;RNA export from nucleus;0.00462172086257004!GO:0043596;nuclear replication fork;0.00462638053220761!GO:0032561;guanyl ribonucleotide binding;0.00468384277336749!GO:0019001;guanyl nucleotide binding;0.00468384277336749!GO:0005905;coated pit;0.00474916112870364!GO:0006509;membrane protein ectodomain proteolysis;0.0049729660025238!GO:0033619;membrane protein proteolysis;0.0049729660025238!GO:0008022;protein C-terminus binding;0.00513743008267872!GO:0044437;vacuolar part;0.00520975804686314!GO:0004527;exonuclease activity;0.00523170200184785!GO:0030663;COPI coated vesicle membrane;0.00529069412268761!GO:0030126;COPI vesicle coat;0.00529069412268761!GO:0006378;mRNA polyadenylation;0.00532610972166016!GO:0005684;U2-dependent spliceosome;0.00533215316714059!GO:0032508;DNA duplex unwinding;0.00567153455380649!GO:0032392;DNA geometric change;0.00567153455380649!GO:0008312;7S RNA binding;0.00567518559914883!GO:0048487;beta-tubulin binding;0.00568180459062305!GO:0006650;glycerophospholipid metabolic process;0.00572976037150523!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00576080734043244!GO:0007006;mitochondrial membrane organization and biogenesis;0.00576288140710365!GO:0031123;RNA 3'-end processing;0.00589984813850354!GO:0035257;nuclear hormone receptor binding;0.00597151056120452!GO:0051087;chaperone binding;0.0062607153593207!GO:0007017;microtubule-based process;0.0063749130201214!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00656543791841939!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00688360504409635!GO:0045047;protein targeting to ER;0.00688360504409635!GO:0006497;protein amino acid lipidation;0.00704475841589705!GO:0006270;DNA replication initiation;0.00817165297564434!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00843029185072699!GO:0022406;membrane docking;0.00859841357210412!GO:0048278;vesicle docking;0.00859841357210412!GO:0006268;DNA unwinding during replication;0.00865360238463562!GO:0006275;regulation of DNA replication;0.00897758347314837!GO:0006904;vesicle docking during exocytosis;0.00906826744137795!GO:0030384;phosphoinositide metabolic process;0.00976284538363051!GO:0050662;coenzyme binding;0.00991227767218182!GO:0006458;'de novo' protein folding;0.00999844581735705!GO:0051084;'de novo' posttranslational protein folding;0.00999844581735705!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0103380107185673!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0103380107185673!GO:0030503;regulation of cell redox homeostasis;0.0103520879728966!GO:0043681;protein import into mitochondrion;0.0103670481830623!GO:0022890;inorganic cation transmembrane transporter activity;0.0104357302254745!GO:0001836;release of cytochrome c from mitochondria;0.0104357302254745!GO:0008092;cytoskeletal protein binding;0.010462377857098!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0105375465166156!GO:0005083;small GTPase regulator activity;0.0111223761881619!GO:0016481;negative regulation of transcription;0.0111295344453576!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0119649467147798!GO:0015002;heme-copper terminal oxidase activity;0.0119649467147798!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0119649467147798!GO:0004129;cytochrome-c oxidase activity;0.0119649467147798!GO:0031902;late endosome membrane;0.0121563753866166!GO:0005663;DNA replication factor C complex;0.0122048691480401!GO:0006401;RNA catabolic process;0.0124117921666915!GO:0030125;clathrin vesicle coat;0.0126938227777753!GO:0030665;clathrin coated vesicle membrane;0.0126938227777753!GO:0065007;biological regulation;0.0127043594981543!GO:0006352;transcription initiation;0.0131727326536091!GO:0005869;dynactin complex;0.0135260124699045!GO:0003756;protein disulfide isomerase activity;0.0137935262397421!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0137935262397421!GO:0005832;chaperonin-containing T-complex;0.0139144164974635!GO:0004448;isocitrate dehydrogenase activity;0.0142941084980789!GO:0003678;DNA helicase activity;0.0144416457529154!GO:0005791;rough endoplasmic reticulum;0.0148064524765648!GO:0003923;GPI-anchor transamidase activity;0.014914029585899!GO:0016255;attachment of GPI anchor to protein;0.014914029585899!GO:0042765;GPI-anchor transamidase complex;0.014914029585899!GO:0006518;peptide metabolic process;0.0155143902512071!GO:0003684;damaged DNA binding;0.0156507759479611!GO:0000209;protein polyubiquitination;0.0158526810328803!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0161862704718096!GO:0051881;regulation of mitochondrial membrane potential;0.0162977169463808!GO:0045786;negative regulation of progression through cell cycle;0.0165482515069004!GO:0006595;polyamine metabolic process;0.0165522133650095!GO:0000786;nucleosome;0.0166710320338079!GO:0033673;negative regulation of kinase activity;0.0166710320338079!GO:0006469;negative regulation of protein kinase activity;0.0166710320338079!GO:0009112;nucleobase metabolic process;0.0166710320338079!GO:0042581;specific granule;0.0167093199375157!GO:0051287;NAD binding;0.0171157283177322!GO:0043022;ribosome binding;0.0174446967267512!GO:0003682;chromatin binding;0.0175274568027599!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0175438701995838!GO:0032594;protein transport within lipid bilayer;0.0175438701995838!GO:0032907;transforming growth factor-beta3 production;0.0175438701995838!GO:0032596;protein transport into lipid raft;0.0175438701995838!GO:0032910;regulation of transforming growth factor-beta3 production;0.0175438701995838!GO:0032595;B cell receptor transport within lipid bilayer;0.0175438701995838!GO:0033606;chemokine receptor transport within lipid bilayer;0.0175438701995838!GO:0032600;chemokine receptor transport out of lipid raft;0.0175438701995838!GO:0032599;protein transport out of lipid raft;0.0175438701995838!GO:0032597;B cell receptor transport into lipid raft;0.0175438701995838!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0175438701995838!GO:0048519;negative regulation of biological process;0.0175438701995838!GO:0006626;protein targeting to mitochondrion;0.0185440447496615!GO:0006338;chromatin remodeling;0.0185440447496615!GO:0016197;endosome transport;0.018551181868665!GO:0016044;membrane organization and biogenesis;0.0186405777162127!GO:0050811;GABA receptor binding;0.0187345040968145!GO:0051539;4 iron, 4 sulfur cluster binding;0.0188551985442705!GO:0005765;lysosomal membrane;0.0191807765975864!GO:0030433;ER-associated protein catabolic process;0.0194959053637089!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0194959053637089!GO:0006839;mitochondrial transport;0.0203397975285325!GO:0008652;amino acid biosynthetic process;0.0203397975285325!GO:0042158;lipoprotein biosynthetic process;0.0205855946069308!GO:0009116;nucleoside metabolic process;0.0209925643609157!GO:0008632;apoptotic program;0.0214229470632751!GO:0005875;microtubule associated complex;0.0218109999287124!GO:0030913;paranodal junction assembly;0.0218302874492113!GO:0032288;myelin formation;0.0218302874492113!GO:0008180;signalosome;0.022002817552431!GO:0006402;mRNA catabolic process;0.0223286668677664!GO:0009100;glycoprotein metabolic process;0.0223953811094353!GO:0030119;AP-type membrane coat adaptor complex;0.0227295401345691!GO:0000075;cell cycle checkpoint;0.0227295401345691!GO:0030131;clathrin adaptor complex;0.0232080196432799!GO:0050178;phenylpyruvate tautomerase activity;0.0239242516533241!GO:0000082;G1/S transition of mitotic cell cycle;0.0240488856153346!GO:0004860;protein kinase inhibitor activity;0.0242978792344124!GO:0044452;nucleolar part;0.0247747833295275!GO:0006860;extracellular amino acid transport;0.0249499082227488!GO:0006284;base-excision repair;0.0250627611160159!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0250769550373645!GO:0051348;negative regulation of transferase activity;0.0256378698871507!GO:0006144;purine base metabolic process;0.0257784522143466!GO:0005112;Notch binding;0.0257784522143466!GO:0000776;kinetochore;0.0260080003613366!GO:0042987;amyloid precursor protein catabolic process;0.0260631245822354!GO:0008408;3'-5' exonuclease activity;0.0261785498237805!GO:0051085;chaperone cofactor-dependent protein folding;0.026228916432506!GO:0016126;sterol biosynthetic process;0.0265701727820249!GO:0051053;negative regulation of DNA metabolic process;0.0268695980286057!GO:0035267;NuA4 histone acetyltransferase complex;0.0277919056959964!GO:0030134;ER to Golgi transport vesicle;0.0280367517891058!GO:0016579;protein deubiquitination;0.0281260461059703!GO:0043414;biopolymer methylation;0.0281797450551662!GO:0007010;cytoskeleton organization and biogenesis;0.028308893377265!GO:0048037;cofactor binding;0.0283424543877692!GO:0006892;post-Golgi vesicle-mediated transport;0.028870608941308!GO:0030968;unfolded protein response;0.0289939032958048!GO:0042769;DNA damage response, detection of DNA damage;0.0291633907841068!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0293393183052888!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0293702214612157!GO:0007040;lysosome organization and biogenesis;0.0293702214612157!GO:0008139;nuclear localization sequence binding;0.0294997847980197!GO:0006376;mRNA splice site selection;0.0296746120153411!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0296746120153411!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0297824981006681!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0298397319753139!GO:0030508;thiol-disulfide exchange intermediate activity;0.0298587170299199!GO:0043601;nuclear replisome;0.0309202220249694!GO:0030894;replisome;0.0309202220249694!GO:0051775;response to redox state;0.0309202220249694!GO:0006980;redox signal response;0.0309202220249694!GO:0008629;induction of apoptosis by intracellular signals;0.0314834590086636!GO:0043130;ubiquitin binding;0.0316446862858073!GO:0032182;small conjugating protein binding;0.0316446862858073!GO:0043631;RNA polyadenylation;0.0320102849605092!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0324646034194554!GO:0010257;NADH dehydrogenase complex assembly;0.0324646034194554!GO:0033108;mitochondrial respiratory chain complex assembly;0.0324646034194554!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0334939912678157!GO:0015036;disulfide oxidoreductase activity;0.0339850231740515!GO:0019867;outer membrane;0.0340556115665154!GO:0050435;beta-amyloid metabolic process;0.0343140219708941!GO:0032405;MutLalpha complex binding;0.0346109469054226!GO:0065009;regulation of a molecular function;0.034966151927637!GO:0048245;eosinophil chemotaxis;0.035089402005736!GO:0000792;heterochromatin;0.0355360435243799!GO:0046983;protein dimerization activity;0.03588230242719!GO:0051128;regulation of cellular component organization and biogenesis;0.0362459268363037!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0362459268363037!GO:0030127;COPII vesicle coat;0.0368796992487493!GO:0012507;ER to Golgi transport vesicle membrane;0.0368796992487493!GO:0043284;biopolymer biosynthetic process;0.0371457462314921!GO:0045936;negative regulation of phosphate metabolic process;0.0374289924392155!GO:0000775;chromosome, pericentric region;0.0376037038501135!GO:0006643;membrane lipid metabolic process;0.0382173074741491!GO:0006516;glycoprotein catabolic process;0.0386912102696616!GO:0006220;pyrimidine nucleotide metabolic process;0.0387573070835516!GO:0007021;tubulin folding;0.0391323782343094!GO:0043189;H4/H2A histone acetyltransferase complex;0.0394827103679872!GO:0031968;organelle outer membrane;0.0401243574215774!GO:0030004;cellular monovalent inorganic cation homeostasis;0.0401243574215774!GO:0055067;monovalent inorganic cation homeostasis;0.0401243574215774!GO:0000303;response to superoxide;0.0401559309662518!GO:0006695;cholesterol biosynthetic process;0.0412057338425408!GO:0040029;regulation of gene expression, epigenetic;0.04128763358402!GO:0044454;nuclear chromosome part;0.0414771743878741!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0415206798452173!GO:0012510;trans-Golgi network transport vesicle membrane;0.0415206798452173!GO:0009066;aspartate family amino acid metabolic process;0.0415654910373538!GO:0006984;ER-nuclear signaling pathway;0.041744924049475!GO:0060164;regulation of timing of neuron differentiation;0.041744924049475!GO:0014017;neuroblast fate commitment;0.041744924049475!GO:0007400;neuroblast fate determination;0.041744924049475!GO:0014016;neuroblast differentiation;0.041744924049475!GO:0060163;subpallium neuron fate commitment;0.041744924049475!GO:0060165;regulation of timing of subpallium neuron differentiation;0.041744924049475!GO:0008270;zinc ion binding;0.041744924049475!GO:0003711;transcription elongation regulator activity;0.041744924049475!GO:0004532;exoribonuclease activity;0.041744924049475!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.041744924049475!GO:0033170;DNA-protein loading ATPase activity;0.0420294080623047!GO:0003689;DNA clamp loader activity;0.0420294080623047!GO:0046483;heterocycle metabolic process;0.0424040820228729!GO:0016605;PML body;0.0430565784665934!GO:0030911;TPR domain binding;0.0431576826859766!GO:0045603;positive regulation of endothelial cell differentiation;0.0431722381276354!GO:0042770;DNA damage response, signal transduction;0.0431722381276354!GO:0032404;mismatch repair complex binding;0.0432844075174313!GO:0030027;lamellipodium;0.0435874216726161!GO:0016584;nucleosome positioning;0.0435874216726161!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0450684759627615!GO:0019318;hexose metabolic process;0.0452255777381531!GO:0008156;negative regulation of DNA replication;0.0461561490052232!GO:0045767;regulation of anti-apoptosis;0.0462525218966516!GO:0008538;proteasome activator activity;0.0463098003636094!GO:0046979;TAP2 binding;0.048159977447963!GO:0046977;TAP binding;0.048159977447963!GO:0046978;TAP1 binding;0.048159977447963!GO:0004674;protein serine/threonine kinase activity;0.0485330990101486!GO:0008536;Ran GTPase binding;0.0486352973769322!GO:0005784;translocon complex;0.0486812891355966!GO:0009003;signal peptidase activity;0.0488593395399884!GO:0030145;manganese ion binding;0.0495513915686953!GO:0006672;ceramide metabolic process;0.0496132919917788!GO:0007033;vacuole organization and biogenesis;0.0497534185876338 | |||
|sample_id=10609 | |||
|sample_note= | |||
|sample_sex=male | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=intestine | |||
|top_motifs=SNAI1..3:2.82966662231;LMO2:2.80810727022;ZEB1:2.61779373638;ARID5B:2.37620166644;MYOD1:2.14016117177;ATF6:2.12338680858;NKX6-1,2:2.02198606187;ELK1,4_GABP{A,B1}:1.98792448444;HAND1,2:1.88268599982;FOXQ1:1.82048048965;ONECUT1,2:1.62349829394;RFX1:1.56595650372;ALX1:1.46611847342;NKX2-3_NKX2-5:1.46217787488;HOX{A6,A7,B6,B7}:1.40546706655;FOX{D1,D2}:1.36410976402;ZBTB16:1.31296992563;PDX1:1.2507275433;NFY{A,B,C}:1.17890125882;BREu{core}:1.13296732731;RFX2..5_RFXANK_RFXAP:1.09413095437;NKX3-2:1.09342025096;DBP:1.06460929891;NRF1:1.05853044614;TEF:1.03588582507;PAX3,7:1.03425012285;NHLH1,2:0.894839746258;TGIF1:0.882917473114;NKX3-1:0.874431633943;GFI1:0.861675762674;E2F1..5:0.854347933905;FOXA2:0.844746315923;bHLH_family:0.837360621691;FOX{F1,F2,J1}:0.800906934456;EVI1:0.785363684612;T:0.778568015493;POU6F1:0.770118504023;FOXN1:0.765396417639;FOXO1,3,4:0.730562550394;YY1:0.718779104192;XCPE1{core}:0.700158673185;ZNF143:0.687496383969;NR6A1:0.670125185888;FOXP1:0.656731253173;SOX{8,9,10}:0.646308742531;ATF4:0.637838935366;HIF1A:0.594111430468;MYFfamily:0.586348589748;ATF5_CREB3:0.534373889299;NANOG:0.52841086957;ATF2:0.520880549136;ADNP_IRX_SIX_ZHX:0.498970066369;PAX4:0.487609566771;FOXL1:0.482875803658;AIRE:0.438606169662;UFEwm:0.422450741482;MAFB:0.418192842213;FOX{I1,J2}:0.399013082672;REST:0.397706521823;PAX8:0.37953551058;SREBF1,2:0.372109685882;GFI1B:0.36125786171;NR5A1,2:0.354847910932;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.354214504555;FOXM1:0.347507422122;TBX4,5:0.340892711219;POU2F1..3:0.329128784654;ZBTB6:0.306312697182;CDX1,2,4:0.245322022597;JUN:0.232124577324;POU1F1:0.230957993791;IKZF2:0.208797320863;HOX{A4,D4}:0.198303512984;PBX1:0.187330756707;RORA:0.1641640981;PPARG:0.16295017478;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.153714387232;XBP1:0.150749937797;MED-1{core}:0.139665325649;PITX1..3:0.122600334868;TFAP2B:0.100644855846;AR:0.0978951617563;SOX2:0.0959041498105;HNF4A_NR2F1,2:0.0951090515887;EGR1..3:0.0540941749219;GCM1,2:0.0322086029962;ELF1,2,4:0.0107131676253;FOXD3:-0.000180661318901;SP1:-0.00359005341065;KLF4:-0.0222532076833;ALX4:-0.0505504027251;SPZ1:-0.0597658264965;NKX2-1,4:-0.0695876319057;STAT1,3:-0.0862866736143;FOSL2:-0.125634946427;TLX2:-0.129162292964;EBF1:-0.133041970626;HMX1:-0.139976189777;HIC1:-0.162199109449;HNF1A:-0.164478179584;SOX17:-0.180965930277;MEF2{A,B,C,D}:-0.181663576298;CUX2:-0.213731630974;TOPORS:-0.216663757848;CREB1:-0.22524590793;ZIC1..3:-0.239423547065;MTE{core}:-0.240890634552;TFDP1:-0.250860561697;POU3F1..4:-0.290904066434;MYB:-0.295402644838;MTF1:-0.318523659244;AHR_ARNT_ARNT2:-0.333448880846;GATA4:-0.336116893819;NANOG{mouse}:-0.342875566271;GATA6:-0.351742133227;FOS_FOS{B,L1}_JUN{B,D}:-0.357347993356;NFE2L1:-0.387363862693;ETS1,2:-0.394820215053;ZFP161:-0.412414899881;NKX2-2,8:-0.413705471346;HOXA9_MEIS1:-0.426902445187;HLF:-0.434744150747;EP300:-0.446581570052;TFAP2{A,C}:-0.458140552763;BACH2:-0.472848054295;EN1,2:-0.494681692897;TAL1_TCF{3,4,12}:-0.502169806553;ZNF423:-0.510814186666;TBP:-0.521054047887;RREB1:-0.524842221737;LHX3,4:-0.528543188534;GTF2I:-0.547833630904;GZF1:-0.549252066116;NFE2:-0.555831707454;SPIB:-0.565863353262;TFAP4:-0.595001375842;SPI1:-0.596850368772;HBP1_HMGB_SSRP1_UBTF:-0.633496021684;FOXP3:-0.649315446137;OCT4_SOX2{dimer}:-0.650733524009;IRF1,2:-0.668825057649;SOX5:-0.672265265624;TFCP2:-0.685200608416;NFKB1_REL_RELA:-0.720615074475;CRX:-0.744078633141;STAT5{A,B}:-0.776852700849;TP53:-0.778328962321;NR1H4:-0.785974445624;PAX2:-0.789489475516;MAZ:-0.803387329753;CEBPA,B_DDIT3:-0.804838252384;PRRX1,2:-0.805254698062;RUNX1..3:-0.806892220341;PAX1,9:-0.814363709987;POU5F1:-0.827476924889;BPTF:-0.84863265796;DMAP1_NCOR{1,2}_SMARC:-0.883797227882;NFE2L2:-0.899367612255;ESR1:-0.912575598405;GLI1..3:-0.914228511586;STAT2,4,6:-0.918293478743;VSX1,2:-0.936339047584;CDC5L:-0.946580690778;RBPJ:-1.00066122219;PATZ1:-1.00905867371;HSF1,2:-1.02300709406;RXR{A,B,G}:-1.02481144755;IKZF1:-1.02602797347;HMGA1,2:-1.03034694592;TEAD1:-1.03392112052;RXRA_VDR{dimer}:-1.05281930134;LEF1_TCF7_TCF7L1,2:-1.08155725044;PAX5:-1.11926435339;ESRRA:-1.15529875162;IRF7:-1.17722268307;NR3C1:-1.1914320734;ZNF384:-1.23393778498;HES1:-1.2510269837;ZNF238:-1.27586296533;NFIX:-1.30198303953;ZNF148:-1.34129396876;MZF1:-1.35668903869;PAX6:-1.41787149199;GTF2A1,2:-1.45241138012;PRDM1:-1.47053764108;TLX1..3_NFIC{dimer}:-1.50774039115;SRF:-1.50860067718;SMAD1..7,9:-1.54451789265;NFIL3:-1.75914889672;NFATC1..3:-1.83153101634;MYBL2:-1.90421920982;HOX{A5,B5}:-1.91804827578 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10609-108F6;search_select_hide=table117:FF:10609-108F6 | |||
}} | }} |
Latest revision as of 14:31, 3 June 2020
Name: | small-cell gastrointestinal carcinoma cell line:ECC4 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11734 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11734
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11734
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.706 |
10 | 10 | 0.893 |
100 | 100 | 0.581 |
101 | 101 | 0.617 |
102 | 102 | 0.127 |
103 | 103 | 0.178 |
104 | 104 | 0.558 |
105 | 105 | 0.354 |
106 | 106 | 0.0176 |
107 | 107 | 0.0673 |
108 | 108 | 0.554 |
109 | 109 | 0.893 |
11 | 11 | 0.645 |
110 | 110 | 0.193 |
111 | 111 | 0.228 |
112 | 112 | 0.738 |
113 | 113 | 0.0494 |
114 | 114 | 0.503 |
115 | 115 | 0.0608 |
116 | 116 | 0.216 |
117 | 117 | 0.698 |
118 | 118 | 0.897 |
119 | 119 | 0.706 |
12 | 12 | 0.4 |
120 | 120 | 0.372 |
121 | 121 | 0.822 |
122 | 122 | 0.256 |
123 | 123 | 0.575 |
124 | 124 | 0.276 |
125 | 125 | 0.626 |
126 | 126 | 0.607 |
127 | 127 | 0.178 |
128 | 128 | 0.303 |
129 | 129 | 0.668 |
13 | 13 | 0.816 |
130 | 130 | 0.276 |
131 | 131 | 0.501 |
132 | 132 | 0.563 |
133 | 133 | 0.477 |
134 | 134 | 0.631 |
135 | 135 | 0.0797 |
136 | 136 | 0.029 |
137 | 137 | 0.0368 |
138 | 138 | 0.736 |
139 | 139 | 0.586 |
14 | 14 | 0.725 |
140 | 140 | 0.376 |
141 | 141 | 0.44 |
142 | 142 | 0.854 |
143 | 143 | 0.108 |
144 | 144 | 0.00441 |
145 | 145 | 0.264 |
146 | 146 | 0.5 |
147 | 147 | 0.885 |
148 | 148 | 0.594 |
149 | 149 | 0.854 |
15 | 15 | 0.601 |
150 | 150 | 0.656 |
151 | 151 | 0.514 |
152 | 152 | 0.0629 |
153 | 153 | 0.966 |
154 | 154 | 0.752 |
155 | 155 | 0.12 |
156 | 156 | 0.326 |
157 | 157 | 0.41 |
158 | 158 | 0.771 |
159 | 159 | 0.265 |
16 | 16 | 0.895 |
160 | 160 | 0.0553 |
161 | 161 | 0.839 |
162 | 162 | 0.901 |
163 | 163 | 0.58 |
164 | 164 | 0.285 |
165 | 165 | 0.538 |
166 | 166 | 0.335 |
167 | 167 | 0.147 |
168 | 168 | 0.0146 |
169 | 169 | 0.0593 |
17 | 17 | 0.353 |
18 | 18 | 0.553 |
19 | 19 | 0.198 |
2 | 2 | 0.566 |
20 | 20 | 0.94 |
21 | 21 | 0.0803 |
22 | 22 | 0.144 |
23 | 23 | 0.0488 |
24 | 24 | 0.405 |
25 | 25 | 0.669 |
26 | 26 | 0.711 |
27 | 27 | 0.949 |
28 | 28 | 0.999 |
29 | 29 | 0.453 |
3 | 3 | 0.257 |
30 | 30 | 0.502 |
31 | 31 | 0.595 |
32 | 32 | 0.0294 |
33 | 33 | 0.958 |
34 | 34 | 0.085 |
35 | 35 | 0.446 |
36 | 36 | 0.517 |
37 | 37 | 0.626 |
38 | 38 | 0.993 |
39 | 39 | 0.0517 |
4 | 4 | 0.656 |
40 | 40 | 0.212 |
41 | 41 | 0.39 |
42 | 42 | 0.218 |
43 | 43 | 0.189 |
44 | 44 | 0.421 |
45 | 45 | 0.05 |
46 | 46 | 0.987 |
47 | 47 | 0.411 |
48 | 48 | 0.969 |
49 | 49 | 0.23 |
5 | 5 | 0.754 |
50 | 50 | 0.188 |
51 | 51 | 0.408 |
52 | 52 | 0.132 |
53 | 53 | 0.268 |
54 | 54 | 0.271 |
55 | 55 | 0.454 |
56 | 56 | 0.785 |
57 | 57 | 0.555 |
58 | 58 | 0.405 |
59 | 59 | 0.111 |
6 | 6 | 0.348 |
60 | 60 | 0.112 |
61 | 61 | 0.467 |
62 | 62 | 0.201 |
63 | 63 | 0.226 |
64 | 64 | 0.928 |
65 | 65 | 0.501 |
66 | 66 | 0.294 |
67 | 67 | 0.748 |
68 | 68 | 0.48 |
69 | 69 | 0.884 |
7 | 7 | 0.854 |
70 | 70 | 0.501 |
71 | 71 | 0.612 |
72 | 72 | 0.213 |
73 | 73 | 0.45 |
74 | 74 | 0.291 |
75 | 75 | 0.839 |
76 | 76 | 0.717 |
77 | 77 | 0.0312 |
78 | 78 | 0.0974 |
79 | 79 | 0.705 |
8 | 8 | 0.99 |
80 | 80 | 0.0908 |
81 | 81 | 0.0797 |
82 | 82 | 0.155 |
83 | 83 | 0.199 |
84 | 84 | 0.493 |
85 | 85 | 0.0907 |
86 | 86 | 0.2 |
87 | 87 | 0.284 |
88 | 88 | 0.316 |
89 | 89 | 0.605 |
9 | 9 | 0.137 |
90 | 90 | 0.266 |
91 | 91 | 0.188 |
92 | 92 | 0.259 |
93 | 93 | 0.419 |
94 | 94 | 0.443 |
95 | 95 | 0.635 |
96 | 96 | 0.245 |
97 | 97 | 0.485 |
98 | 98 | 0.156 |
99 | 99 | 0.473 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11734
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
FF:0101533 gastrointestinal cancer cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
3119 (gastrointestinal system cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101533 (gastrointestinal cancer cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA