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{{f5samples
{{f5samples
|id=FF:10174-103C3
|DRA_sample_Accession=CAGE@SAMD00005590
|name=medulla oblongata - adult, donor10196
|accession_numbers=CAGE;DRX008686;DRR009558;DRZ000983;DRZ002368;DRZ012333;DRZ013718
|sample_id=10174
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001896,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0002298,UBERON:0002028,UBERON:0005290
|rna_tube_id=103C3
|rna_box=103
|rna_position=C3
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=medulla oblongata
|sample_donor(cell lot)=donor: 10196
|sample_sex=female
|sample_age=60
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.24
|rna_od260/280=2.03
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=Peter Heutink
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=48.93525
|rna_concentration=0.65247
|sample_note=
|profile_hcage=CNhs13800,LSID1086,release014,COMPLETED
|profile_cagescan=
|profile_srnaseq=
|profile_rnaseq=
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000073,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001896,UBERON:0002028,UBERON:0002050,UBERON:0002298,UBERON:0002346,UBERON:0002532,UBERON:0002616,UBERON:0003057,UBERON:0003075,UBERON:0003076,UBERON:0004121,UBERON:0004732,UBERON:0004733,UBERON:0005068,UBERON:0005290,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007023,UBERON:0007135,UBERON:0007284
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010038
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr21:34442439..34442455,+!p1@OLIG1!2.51!321.68!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.47!293.59!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.14!138.19!PEG3;;chr12:106976774..106976788,+!p1@RFX4!1.98!93.47!RFX4;;chr11:61520075..61520136,+!p1@C11orf9!1.83!137.62!C11orf9;;chr14:57277178..57277203,-!p1@OTX2!1.83!66.52!OTX2;;chr10:48355030..48355090,+!p1@ZNF488!1.79!77.98!ZNF488;;chr3:181429704..181429722,+!p1@SOX2!1.79!61.35!SOX2;;chr12:106976678..106976708,+!p2@RFX4!1.79!60.78!RFX4;;chr22:38380543..38380569,-!p1@SOX10!1.79!60.21!SOX10;;chr8:53322304..53322340,-!p1@ST18!1.78!59.63!ST18;;chr9:114287433..114287513,+!p1@ZNF483!1.71!126.15!ZNF483;;chr21:34442540..34442560,+!p2@OLIG1!1.63!41.29!OLIG1;;chr12:103351444..103351461,+!p1@ASCL1!1.61!40.14!ASCL1;;chr21:34398234..34398250,+!p1@OLIG2!1.60!38.99!OLIG2;;chr2:145277882..145277967,-!p3@ZEB2!1.58!63.08!ZEB2;;chr3:147127177..147127194,+!p2@ZIC1!1.58!37.27!ZIC1;;chr4:57547454..57547469,-!p1@HOPX!1.58!36.70!HOPX;;chr17:74137321..74137337,-!p1@FOXJ1!1.56!35.55!FOXJ1;;chr12:26277817..26277863,-!p2@BHLHE41!1.51!41.86!BHLHE41;;chr16:1031762..1031781,+!p1@SOX8!1.51!31.54!SOX8;;chr4:81118647..81118666,+!p1@PRDM8!1.48!37.85!PRDM8;;chr10:134599649..134599653,-!p1@NKX6-2!1.46!28.10!NKX6-2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.44!26.38!POU3F3;;chr3:147127142..147127168,+!p1@ZIC1!1.44!26.38!ZIC1;;chr3:181429741..181429767,+!p2@SOX2!1.43!25.80!SOX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.80!ZBED1;;chr11:31832658..31832681,-!p1@PAX6!1.42!25.23!PAX6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.42!25.23!TFCP2L1;;chr15:42749722..42749739,-!p2@ZFP106!1.40!42.43!ZFP106;;chr8:53322347..53322378,-!p2@ST18!1.40!24.08!ST18;;chr11:113930425..113930471,+!p1@ZBTB16!1.38!32.68!ZBTB16;;chr12:26277956..26277980,-!p1@BHLHE41!1.37!78.56!BHLHE41;;chr19:46801639..46801699,+!p1@HIF3A!1.37!22.36!HIF3A;;chr15:80696703..80696754,+!p1@ARNT2!1.36!29.24!ARNT2;;chr14:33403881..33403924,+!p1@NPAS3!1.36!21.79!NPAS3;;chr1:214161272..214161322,+!p1@PROX1!1.35!29.82!PROX1;;chr19:30863271..30863338,+!p1@ZNF536!1.34!20.64!ZNF536;;chr1:61548069..61548102,+!p3@NFIA!1.32!47.59!NFIA;;chr14:33408072..33408114,+!p2@NPAS3!1.32!23.51!NPAS3;;chr7:63505799..63505904,+!p1@ZNF727!1.32!20.07!ZNF727;;chr14:57277098..57277116,-!p3@OTX2!1.30!18.92!OTX2;;chr11:8102846..8102892,+!p1@TUB!1.29!25.80!TUB;;chr11:125034640..125034655,+!p1@PKNOX2!1.29!18.35!PKNOX2;;chr9:77112244..77112262,+!p1@RORB!1.25!18.92!RORB;;chr3:147111505..147111529,+!p6@ZIC1!1.25!16.63!ZIC1;;chr17:53342311..53342400,+!p1@HLF!1.24!18.92!HLF;;chr3:126076242..126076257,-!p1@KLF15!1.23!20.07!KLF15;;chr3:187463179..187463201,-!p2@BCL6!1.22!64.22!BCL6;;chr20:62680984..62680999,-!p1@SOX18!1.20!19.50!SOX18;;chr13:100634031..100634045,+!p1@ZIC2!1.20!14.91!ZIC2;;chr6:126070769..126070801,+!p1@HEY2!1.19!16.63!HEY2;;chr6:19837592..19837621,+!p1@ID4!1.18!85.44!ID4;;chr12:26277929..26277955,-!p3@BHLHE41!1.17!19.50!BHLHE41;;chr2:166326200..166326216,+!p1@CSRNP3!1.16!19.50!CSRNP3;;chr19:57352109..57352153,-!p2@ZIM2!1.15!13.19!ZIM2;;chr9:4300050..4300118,-!p1@GLIS3!1.14!82.57!GLIS3;;chr10:35484053..35484076,+!p1@CREM!1.14!32.11!CREM;;chr12:54779511..54779577,-!p5@ZNF385A!1.13!12.62!ZNF385A;;chr17:70117153..70117174,+!p1@SOX9!1.12!124.43!SOX9;;chr3:147111231..147111281,+!p3@ZIC1!1.12!12.04!ZIC1;;chr4:26344778..26344807,+!p8@RBPJ!1.12!12.04!RBPJ;;chr3:114343768..114343822,-!p1@ZBTB20!1.11!51.61!ZBTB20;;chr21:39870339..39870443,-!p1@ERG!1.10!11.47!ERG;;chr12:106976656..106976672,+!p4@RFX4!1.10!11.47!RFX4;;chr14:33403648..33403710,+!p3@NPAS3!1.10!11.47!NPAS3;;chr13:72441315..72441454,-!p1@DACH1!1.09!22.94!DACH1;;chr1:61548374..61548415,+!p4@NFIA!1.08!20.64!NFIA;;chr11:47400078..47400106,-!p1@SPI1!1.08!10.89!SPI1;;chr12:103352277..103352324,+!p2@ASCL1!1.08!10.89!ASCL1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.08!10.89!SMARCE1;;chr8:40755333..40755352,-!p1@ZMAT4!1.08!10.89!ZMAT4;;chr18:77155922..77155939,+!p1@NFATC1!1.07!29.82!NFATC1;;chr19:21512202..21512225,-!p1@ZNF708!1.06!54.47!ZNF708;;chr1:61548225..61548299,+!p1@NFIA!1.05!134.75!NFIA;;chr20:21494654..21494678,-!p2@NKX2-2!1.05!10.32!NKX2-2;;chr15:61521495..61521506,-!p5@RORA!1.05!10.32!RORA;;chr19:13135386..13135435,+!p4@NFIX!1.05!10.32!NFIX;;chr11:31832862..31832884,-!p2@PAX6!1.05!10.32!PAX6;;chr11:31839488..31839515,-!p3@PAX6!1.05!10.32!PAX6;;chr2:95963052..95963106,+!p1@KCNIP3!1.05!10.32!KCNIP3;;chr9:2159850..2159880,+!p14@SMARCA2!1.05!10.32!SMARCA2;;chr19:38085768..38085821,+!p1@ZNF540!1.04!14.91!ZNF540;;chr19:58545369..58545404,+!p2@ZSCAN1!1.03!9.75!ZSCAN1;;chr19:6110458..6110472,-!p3@RFX2!1.03!9.75!RFX2;;chr3:147111198..147111225,+!p4@ZIC1!1.03!9.75!ZIC1;;chr15:57511609..57511651,+!p2@TCF12!1.02!16.06!TCF12;;chr9:3525848..3525863,-!p6@RFX3!1.01!9.17!RFX3;;chr10:48359344..48359376,+!p2@ZNF488!1.01!9.17!ZNF488;;chr7:50344289..50344323,+!p1@IKZF1!1.01!9.17!IKZF1;;chr12:54785074..54785122,-!p2@ZNF385A!0.99!13.76!ZNF385A;;chr19:9879350..987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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001896;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002298
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|fonse_cell_line=
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|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|comment=
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|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%2520-%2520adult%252c%2520donor10196.CNhs13800.10174-103C3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%2520-%2520adult%252c%2520donor10196.CNhs13800.10174-103C3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%2520-%2520adult%252c%2520donor10196.CNhs13800.10174-103C3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%2520-%2520adult%252c%2520donor10196.CNhs13800.10174-103C3.hg38.nobarcode.ctss.bed.gz
|id=FF:10174-103C3
|is_a=EFO:0002091;;FF:0010038
|is_obsolete=
|library_id=CNhs13800
|library_id_phase_based=2:CNhs13800
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10174
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10174
|name=medulla oblongata - adult, donor10196
|namespace=FANTOM5
|namespace=FANTOM5
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|rna_box=103
|rna_catalog_number=
|rna_concentration=0.65247
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.24
|rna_od260/280=2.03
|rna_position=C3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=103C3
|rna_weight_ug=48.93525
|sample_age=60
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=Peter Heutink
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donor: 10196
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.49967672783382e-279!GO:0005737;cytoplasm;2.08040162947118e-171!GO:0044444;cytoplasmic part;4.28620939427893e-120!GO:0043226;organelle;1.54866353142334e-97!GO:0043229;intracellular organelle;3.81634167645081e-97!GO:0043227;membrane-bound organelle;2.64281429817283e-87!GO:0043231;intracellular membrane-bound organelle;3.25546216686861e-87!GO:0044422;organelle part;3.06187277529791e-74!GO:0044446;intracellular organelle part;3.77247159893794e-73!GO:0032991;macromolecular complex;1.32479308460169e-59!GO:0005515;protein binding;5.17298998416117e-59!GO:0005739;mitochondrion;2.37842911368056e-54!GO:0030529;ribonucleoprotein complex;3.08472844323391e-47!GO:0016043;cellular component organization and biogenesis;1.78697901217762e-43!GO:0031090;organelle membrane;6.55220963055295e-42!GO:0044429;mitochondrial part;6.40356534873465e-39!GO:0003723;RNA binding;3.92140796000701e-38!GO:0033036;macromolecule localization;5.07045554056089e-37!GO:0015031;protein transport;9.33481448095353e-37!GO:0008104;protein localization;2.10432191938493e-34!GO:0045184;establishment of protein localization;3.82831247535456e-34!GO:0031967;organelle envelope;3.26764433611215e-33!GO:0031975;envelope;3.26764433611215e-33!GO:0046907;intracellular transport;1.06035011085681e-32!GO:0043233;organelle lumen;1.50901463197882e-32!GO:0031974;membrane-enclosed lumen;1.50901463197882e-32!GO:0043234;protein complex;2.25344079386599e-31!GO:0005829;cytosol;3.28566296862442e-28!GO:0005840;ribosome;5.83824198269248e-28!GO:0044237;cellular metabolic process;1.7911567426085e-27!GO:0044428;nuclear part;4.8021090046816e-27!GO:0009058;biosynthetic process;1.84849441032085e-26!GO:0044238;primary metabolic process;2.66127933502603e-26!GO:0005740;mitochondrial envelope;3.7766844752289e-26!GO:0031966;mitochondrial membrane;1.94911956626845e-25!GO:0019538;protein metabolic process;2.2769498871802e-25!GO:0006412;translation;2.39702347578449e-25!GO:0016071;mRNA metabolic process;3.81180001626614e-25!GO:0019866;organelle inner membrane;1.51510154319773e-24!GO:0003735;structural constituent of ribosome;2.01373293535337e-24!GO:0051649;establishment of cellular localization;2.44710105536872e-24!GO:0051641;cellular localization;3.19957899291176e-24!GO:0006886;intracellular protein transport;3.19957899291176e-24!GO:0005743;mitochondrial inner membrane;1.05947401744793e-23!GO:0008380;RNA splicing;5.85790484919975e-23!GO:0006396;RNA processing;1.75778158867943e-22!GO:0044260;cellular macromolecule metabolic process;2.61217582361744e-22!GO:0006119;oxidative phosphorylation;3.59716164389931e-22!GO:0033279;ribosomal subunit;7.28812943620047e-22!GO:0044249;cellular biosynthetic process;1.44509556767973e-21!GO:0006397;mRNA processing;1.55937392755856e-21!GO:0016192;vesicle-mediated transport;3.18784397751064e-21!GO:0044267;cellular protein metabolic process;3.63939887535877e-21!GO:0009059;macromolecule biosynthetic process;4.05930975423644e-21!GO:0065003;macromolecular complex assembly;9.08888098605778e-20!GO:0043170;macromolecule metabolic process;1.10214140363215e-19!GO:0044455;mitochondrial membrane part;6.48667493573613e-19!GO:0048770;pigment granule;8.31221978937908e-18!GO:0042470;melanosome;8.31221978937908e-18!GO:0005794;Golgi apparatus;1.70483933385019e-17!GO:0022607;cellular component assembly;3.50782253154445e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.05051297153416e-17!GO:0031980;mitochondrial lumen;1.51362083902963e-16!GO:0005759;mitochondrial matrix;1.51362083902963e-16!GO:0005746;mitochondrial respiratory chain;1.69177552358368e-16!GO:0050136;NADH dehydrogenase (quinone) activity;5.34741907447569e-16!GO:0003954;NADH dehydrogenase activity;5.34741907447569e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.34741907447569e-16!GO:0006996;organelle organization and biogenesis;7.21704501201255e-16!GO:0012505;endomembrane system;7.28236787400819e-16!GO:0005681;spliceosome;9.25284067339893e-16!GO:0031982;vesicle;1.17310766134713e-15!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.7073236694724e-15!GO:0031410;cytoplasmic vesicle;5.37550472352987e-15!GO:0031981;nuclear lumen;6.56805686065932e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.60357923747773e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;9.26959607232271e-15!GO:0016462;pyrophosphatase activity;1.05937128201894e-14!GO:0044445;cytosolic part;1.7289457189876e-14!GO:0006457;protein folding;4.03751118454338e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.24417375966131e-14!GO:0045271;respiratory chain complex I;4.24417375966131e-14!GO:0005747;mitochondrial respiratory chain complex I;4.24417375966131e-14!GO:0000166;nucleotide binding;4.44374191561798e-14!GO:0017111;nucleoside-triphosphatase activity;6.29526366160639e-14!GO:0031988;membrane-bound vesicle;7.42072241673882e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.83949009876025e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.19037012614686e-13!GO:0042773;ATP synthesis coupled electron transport;1.19037012614686e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.2768057194031e-13!GO:0016023;cytoplasmic membrane-bound vesicle;2.89735228645495e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.72269952210893e-13!GO:0005783;endoplasmic reticulum;5.60804574464792e-13!GO:0043228;non-membrane-bound organelle;5.74215747395337e-13!GO:0043232;intracellular non-membrane-bound organelle;5.74215747395337e-13!GO:0005634;nucleus;9.1378293657475e-13!GO:0022618;protein-RNA complex assembly;3.66287653450815e-12!GO:0015935;small ribosomal subunit;1.87551075908067e-11!GO:0048193;Golgi vesicle transport;1.96952852850988e-11!GO:0015934;large ribosomal subunit;2.97428744194768e-11!GO:0016874;ligase activity;3.35333441831123e-11!GO:0051082;unfolded protein binding;3.90424560429183e-11!GO:0008565;protein transporter activity;6.59785088876598e-11!GO:0006605;protein targeting;9.13434968339929e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.61516382604607e-10!GO:0005654;nucleoplasm;7.30398197007027e-10!GO:0051186;cofactor metabolic process;7.78507508194348e-10!GO:0044265;cellular macromolecule catabolic process;7.81911839385429e-10!GO:0044248;cellular catabolic process;8.22521226916418e-10!GO:0008135;translation factor activity, nucleic acid binding;1.482876418374e-09!GO:0016044;membrane organization and biogenesis;2.23177259564256e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;2.39072478924834e-09!GO:0008092;cytoskeletal protein binding;2.51514241466916e-09!GO:0000502;proteasome complex (sensu Eukaryota);2.55114463766728e-09!GO:0019829;cation-transporting ATPase activity;2.60041234890076e-09!GO:0003924;GTPase activity;2.71947094843491e-09!GO:0017076;purine nucleotide binding;3.18829543473948e-09!GO:0032553;ribonucleotide binding;3.28755998546539e-09!GO:0032555;purine ribonucleotide binding;3.28755998546539e-09!GO:0006511;ubiquitin-dependent protein catabolic process;3.44533346498684e-09!GO:0019941;modification-dependent protein catabolic process;3.92949858994586e-09!GO:0043632;modification-dependent macromolecule catabolic process;3.92949858994586e-09!GO:0044257;cellular protein catabolic process;4.12696877349226e-09!GO:0006461;protein complex assembly;6.13704289558908e-09!GO:0005761;mitochondrial ribosome;6.26750440018042e-09!GO:0000313;organellar ribosome;6.26750440018042e-09!GO:0044451;nucleoplasm part;6.40799332622718e-09!GO:0005768;endosome;7.62103311599717e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.03116896209258e-08!GO:0006446;regulation of translational initiation;1.34061914580158e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.74919085904833e-08!GO:0008134;transcription factor binding;2.07881732485094e-08!GO:0009055;electron carrier activity;2.50435769594334e-08!GO:0051179;localization;2.81430739166727e-08!GO:0009060;aerobic respiration;3.30139949668442e-08!GO:0015630;microtubule cytoskeleton;3.46719547580011e-08!GO:0044432;endoplasmic reticulum part;3.52005247722756e-08!GO:0006413;translational initiation;3.53260450261868e-08!GO:0005635;nuclear envelope;4.12102579012204e-08!GO:0006512;ubiquitin cycle;4.43235753415269e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;5.34097071715413e-08!GO:0000375;RNA splicing, via transesterification reactions;5.34097071715413e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.34097071715413e-08!GO:0045333;cellular respiration;6.23190583688491e-08!GO:0031965;nuclear membrane;6.23190583688491e-08!GO:0006810;transport;7.19386328616149e-08!GO:0048523;negative regulation of cellular process;8.43596472129832e-08!GO:0015986;ATP synthesis coupled proton transport;9.61988240138249e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.61988240138249e-08!GO:0007010;cytoskeleton organization and biogenesis;1.26377429157142e-07!GO:0016604;nuclear body;1.43005664149109e-07!GO:0006732;coenzyme metabolic process;1.75903495686647e-07!GO:0003743;translation initiation factor activity;1.79933870770766e-07!GO:0043285;biopolymer catabolic process;2.00279841633692e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.12549354076438e-07!GO:0016607;nuclear speck;2.21528656759424e-07!GO:0005525;GTP binding;3.27230255102639e-07!GO:0009057;macromolecule catabolic process;4.66839749349494e-07!GO:0010467;gene expression;5.96419946755872e-07!GO:0030163;protein catabolic process;6.60939054981539e-07!GO:0012501;programmed cell death;7.15515798456545e-07!GO:0044431;Golgi apparatus part;8.02152921855332e-07!GO:0031252;leading edge;8.18836376274075e-07!GO:0006915;apoptosis;8.39761953333233e-07!GO:0006099;tricarboxylic acid cycle;9.68055233468279e-07!GO:0046356;acetyl-CoA catabolic process;9.68055233468279e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.08024749356187e-06!GO:0008219;cell death;1.10074996609274e-06!GO:0016265;death;1.10074996609274e-06!GO:0006897;endocytosis;1.13539332950463e-06!GO:0010324;membrane invagination;1.13539332950463e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.13539332950463e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.15539403922193e-06!GO:0005789;endoplasmic reticulum membrane;1.36064190784948e-06!GO:0006913;nucleocytoplasmic transport;1.46543217183635e-06!GO:0009109;coenzyme catabolic process;2.0070106698528e-06!GO:0048519;negative regulation of biological process;2.56109439268127e-06!GO:0048475;coated membrane;2.59811695514218e-06!GO:0030117;membrane coat;2.59811695514218e-06!GO:0051234;establishment of localization;2.61749845729578e-06!GO:0051169;nuclear transport;2.78460489907848e-06!GO:0005874;microtubule;2.95322973583887e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.47360766052707e-06!GO:0043412;biopolymer modification;3.49801318164252e-06!GO:0006754;ATP biosynthetic process;3.72974299901252e-06!GO:0006753;nucleoside phosphate metabolic process;3.72974299901252e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.42020582510349e-06!GO:0009144;purine nucleoside triphosphate metabolic process;4.42020582510349e-06!GO:0006163;purine nucleotide metabolic process;4.64108645131648e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.81043449756964e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.81043449756964e-06!GO:0006464;protein modification process;4.81043449756964e-06!GO:0046034;ATP metabolic process;4.81043449756964e-06!GO:0016887;ATPase activity;4.84881548153675e-06!GO:0043283;biopolymer metabolic process;4.91076635649963e-06!GO:0051187;cofactor catabolic process;5.0478679994544e-06!GO:0009150;purine ribonucleotide metabolic process;5.42865922481424e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.4551550352609e-06!GO:0006164;purine nucleotide biosynthetic process;5.54253465707499e-06!GO:0032561;guanyl ribonucleotide binding;5.60340472373858e-06!GO:0019001;guanyl nucleotide binding;5.60340472373858e-06!GO:0006084;acetyl-CoA metabolic process;5.61284476888184e-06!GO:0048471;perinuclear region of cytoplasm;5.61284476888184e-06!GO:0009141;nucleoside triphosphate metabolic process;5.79943783842147e-06!GO:0045045;secretory pathway;5.85772991299613e-06!GO:0009152;purine ribonucleotide biosynthetic process;6.07103434542951e-06!GO:0009142;nucleoside triphosphate biosynthetic process;6.07103434542951e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.07103434542951e-06!GO:0006793;phosphorus metabolic process;6.07103434542951e-06!GO:0006796;phosphate metabolic process;6.07103434542951e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.49323118495054e-06!GO:0015399;primary active transmembrane transporter activity;6.49323118495054e-06!GO:0005730;nucleolus;6.53467811676827e-06!GO:0030029;actin filament-based process;6.59239549957142e-06!GO:0045259;proton-transporting ATP synthase complex;7.94716807424705e-06!GO:0005769;early endosome;8.40810810269151e-06!GO:0044453;nuclear membrane part;9.09460055145854e-06!GO:0007264;small GTPase mediated signal transduction;1.08190762602353e-05!GO:0043687;post-translational protein modification;1.1380036528062e-05!GO:0009259;ribonucleotide metabolic process;1.29170775187825e-05!GO:0009056;catabolic process;1.45667680412132e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.91305870468173e-05!GO:0008654;phospholipid biosynthetic process;1.94080944617255e-05!GO:0043069;negative regulation of programmed cell death;2.08907954050007e-05!GO:0051246;regulation of protein metabolic process;2.1187865967149e-05!GO:0008639;small protein conjugating enzyme activity;2.16183049350114e-05!GO:0015631;tubulin binding;2.30339247501847e-05!GO:0043066;negative regulation of apoptosis;2.48931282944368e-05!GO:0009260;ribonucleotide biosynthetic process;2.59990381220446e-05!GO:0017038;protein import;2.61525717442614e-05!GO:0019787;small conjugating protein ligase activity;2.75507101168743e-05!GO:0030120;vesicle coat;2.75507101168743e-05!GO:0030662;coated vesicle membrane;2.75507101168743e-05!GO:0005773;vacuole;2.80961455480514e-05!GO:0005875;microtubule associated complex;2.95050291516424e-05!GO:0004842;ubiquitin-protein ligase activity;2.96809752209082e-05!GO:0005643;nuclear pore;2.96809752209082e-05!GO:0000139;Golgi membrane;3.33570995680753e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.42701838504985e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.4610951953569e-05!GO:0042623;ATPase activity, coupled;3.56141360973732e-05!GO:0000245;spliceosome assembly;3.69595902454007e-05!GO:0044440;endosomal part;4.33599406340773e-05!GO:0010008;endosome membrane;4.33599406340773e-05!GO:0006888;ER to Golgi vesicle-mediated transport;5.01584525390577e-05!GO:0032559;adenyl ribonucleotide binding;5.36147935687296e-05!GO:0030554;adenyl nucleotide binding;5.51551733727058e-05!GO:0030695;GTPase regulator activity;5.9935399825796e-05!GO:0005793;ER-Golgi intermediate compartment;6.29172689250447e-05!GO:0000902;cell morphogenesis;6.48664424504779e-05!GO:0032989;cellular structure morphogenesis;6.48664424504779e-05!GO:0005524;ATP binding;7.03822289150614e-05!GO:0005905;coated pit;7.32322699547115e-05!GO:0006916;anti-apoptosis;7.34141452659292e-05!GO:0019899;enzyme binding;7.72748272117598e-05!GO:0016881;acid-amino acid ligase activity;7.99312937782202e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.70923962748287e-05!GO:0043492;ATPase activity, coupled to movement of substances;9.07514622793011e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;9.89487697618112e-05!GO:0006752;group transfer coenzyme metabolic process;0.000104529567788335!GO:0005770;late endosome;0.000107292152175195!GO:0000323;lytic vacuole;0.000107292152175195!GO:0005764;lysosome;0.000107292152175195!GO:0003779;actin binding;0.000116524567909589!GO:0005083;small GTPase regulator activity;0.0001512016908239!GO:0006613;cotranslational protein targeting to membrane;0.000151751838826622!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00015183113983003!GO:0016491;oxidoreductase activity;0.000157083103067839!GO:0008610;lipid biosynthetic process;0.00016903881783224!GO:0016310;phosphorylation;0.000184555077998548!GO:0005798;Golgi-associated vesicle;0.000185397123316714!GO:0050657;nucleic acid transport;0.000190551824180602!GO:0051236;establishment of RNA localization;0.000190551824180602!GO:0050658;RNA transport;0.000190551824180602!GO:0045786;negative regulation of progression through cell cycle;0.000196748887668097!GO:0006403;RNA localization;0.000202568399503214!GO:0006091;generation of precursor metabolites and energy;0.000203063424033148!GO:0003712;transcription cofactor activity;0.000224502890209237!GO:0019752;carboxylic acid metabolic process;0.000228551121566768!GO:0032940;secretion by cell;0.000277095196471118!GO:0016126;sterol biosynthetic process;0.000296811700257751!GO:0006082;organic acid metabolic process;0.000301369228986423!GO:0030532;small nuclear ribonucleoprotein complex;0.000306295940291159!GO:0051188;cofactor biosynthetic process;0.000306295940291159!GO:0022890;inorganic cation transmembrane transporter activity;0.000320249341530887!GO:0046467;membrane lipid biosynthetic process;0.000338824003388876!GO:0016564;transcription repressor activity;0.000348300160037563!GO:0030135;coated vesicle;0.000374744900001439!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000408989676186554!GO:0004812;aminoacyl-tRNA ligase activity;0.000408989676186554!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000408989676186554!GO:0043623;cellular protein complex assembly;0.000423240332524659!GO:0030133;transport vesicle;0.0004431746067913!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000469262348842531!GO:0043038;amino acid activation;0.000493142464921102!GO:0006418;tRNA aminoacylation for protein translation;0.000493142464921102!GO:0043039;tRNA aminoacylation;0.000493142464921102!GO:0051128;regulation of cellular component organization and biogenesis;0.000498180330807561!GO:0065002;intracellular protein transport across a membrane;0.000499226534475409!GO:0008017;microtubule binding;0.000536557842455087!GO:0048468;cell development;0.000544507533346533!GO:0006606;protein import into nucleus;0.00059168425484347!GO:0030286;dynein complex;0.000619788288446589!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000647811212405951!GO:0051170;nuclear import;0.000664678182041587!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000741405534600977!GO:0001726;ruffle;0.000948651392731874!GO:0031072;heat shock protein binding;0.000950370207861935!GO:0005741;mitochondrial outer membrane;0.000950370207861935!GO:0007005;mitochondrion organization and biogenesis;0.000969969083489867!GO:0008287;protein serine/threonine phosphatase complex;0.000981577779268076!GO:0030027;lamellipodium;0.00108359865220704!GO:0008361;regulation of cell size;0.00110455715057137!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00113895908942668!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00113895908942668!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00113895908942668!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00115471882172909!GO:0016197;endosome transport;0.00116362633757333!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00123809468121276!GO:0044255;cellular lipid metabolic process;0.0013761035618142!GO:0003714;transcription corepressor activity;0.00141518764378469!GO:0031968;organelle outer membrane;0.00142255011449888!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00146709467725924!GO:0008047;enzyme activator activity;0.00154365031494489!GO:0046930;pore complex;0.00158215685882585!GO:0051087;chaperone binding;0.00165386564955119!GO:0016049;cell growth;0.00172031644568606!GO:0006650;glycerophospholipid metabolic process;0.00174169057972236!GO:0019867;outer membrane;0.00174768733723123!GO:0051028;mRNA transport;0.00177150429428607!GO:0042802;identical protein binding;0.00181780912197101!GO:0030867;rough endoplasmic reticulum membrane;0.00181780912197101!GO:0051920;peroxiredoxin activity;0.00185163006714148!GO:0005791;rough endoplasmic reticulum;0.0019935540367408!GO:0030118;clathrin coat;0.00201467852900846!GO:0006612;protein targeting to membrane;0.00205094469481758!GO:0031901;early endosome membrane;0.00225597522853649!GO:0043209;myelin sheath;0.00231554193695688!GO:0046870;cadmium ion binding;0.00235111767036627!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00236499471484913!GO:0005839;proteasome core complex (sensu Eukaryota);0.00244239930067237!GO:0003724;RNA helicase activity;0.00247050620541819!GO:0051287;NAD binding;0.00258171704293551!GO:0012506;vesicle membrane;0.00261853935629472!GO:0032446;protein modification by small protein conjugation;0.0026549271095183!GO:0051789;response to protein stimulus;0.00274832341664771!GO:0006986;response to unfolded protein;0.00274832341664771!GO:0006643;membrane lipid metabolic process;0.0028186340783764!GO:0009117;nucleotide metabolic process;0.00308250121602407!GO:0006366;transcription from RNA polymerase II promoter;0.00314991644426471!GO:0009108;coenzyme biosynthetic process;0.00317294667442585!GO:0001666;response to hypoxia;0.00334950297367829!GO:0000159;protein phosphatase type 2A complex;0.00357577025869233!GO:0007019;microtubule depolymerization;0.00357577025869233!GO:0008250;oligosaccharyl transferase complex;0.00360933823047127!GO:0005762;mitochondrial large ribosomal subunit;0.0036110023548976!GO:0000315;organellar large ribosomal subunit;0.0036110023548976!GO:0006414;translational elongation;0.00372258838584518!GO:0016567;protein ubiquitination;0.00379253861944476!GO:0005868;cytoplasmic dynein complex;0.00379715617041175!GO:0000314;organellar small ribosomal subunit;0.00385130298773387!GO:0005763;mitochondrial small ribosomal subunit;0.00385130298773387!GO:0016791;phosphoric monoester hydrolase activity;0.00389221954223384!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00394226452636466!GO:0043566;structure-specific DNA binding;0.00421856579298414!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00434062898699529!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00437879195458504!GO:0006607;NLS-bearing substrate import into nucleus;0.00444814959116942!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00451059240618957!GO:0030426;growth cone;0.00453716570069134!GO:0006695;cholesterol biosynthetic process;0.00453716570069134!GO:0022406;membrane docking;0.004545756192498!GO:0048278;vesicle docking;0.004545756192498!GO:0005096;GTPase activator activity;0.0048503399061455!GO:0030427;site of polarized growth;0.00513218785157031!GO:0030041;actin filament polymerization;0.00520073772581954!GO:0044433;cytoplasmic vesicle part;0.00534057746629335!GO:0003729;mRNA binding;0.00568204203773551!GO:0009081;branched chain family amino acid metabolic process;0.00569749182892916!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00590067154195031!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00600394547840975!GO:0051540;metal cluster binding;0.00614304379446997!GO:0051536;iron-sulfur cluster binding;0.00614304379446997!GO:0000151;ubiquitin ligase complex;0.00620971729467133!GO:0003697;single-stranded DNA binding;0.00630728005510499!GO:0016859;cis-trans isomerase activity;0.00630728005510499!GO:0007272;ensheathment of neurons;0.00640099692111108!GO:0008366;axon ensheathment;0.00640099692111108!GO:0007243;protein kinase cascade;0.00646209030279026!GO:0042254;ribosome biogenesis and assembly;0.00661339667824706!GO:0050662;coenzyme binding;0.0067171491829768!GO:0050811;GABA receptor binding;0.00687842340662258!GO:0005813;centrosome;0.00697674988868156!GO:0006629;lipid metabolic process;0.00707020694873948!GO:0046474;glycerophospholipid biosynthetic process;0.00707704505949486!GO:0006904;vesicle docking during exocytosis;0.00717318109109349!GO:0005100;Rho GTPase activator activity;0.00722156533343697!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00722385351873202!GO:0042981;regulation of apoptosis;0.00734861360808326!GO:0007017;microtubule-based process;0.0076522048546541!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0077536385964665!GO:0043067;regulation of programmed cell death;0.00783164393818303!GO:0048487;beta-tubulin binding;0.00788440201557402!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00794034539425881!GO:0048500;signal recognition particle;0.00810206172141539!GO:0006259;DNA metabolic process;0.00811157305229214!GO:0005938;cell cortex;0.00846080237003909!GO:0004298;threonine endopeptidase activity;0.00849753359775353!GO:0008154;actin polymerization and/or depolymerization;0.00864575792194278!GO:0006892;post-Golgi vesicle-mediated transport;0.00876246611776503!GO:0019717;synaptosome;0.00899175813826714!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00899175813826714!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00899175813826714!GO:0030659;cytoplasmic vesicle membrane;0.00907647933921208!GO:0043284;biopolymer biosynthetic process;0.00917934190306575!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00935054721107016!GO:0004667;prostaglandin-D synthase activity;0.00935054721107016!GO:0050802;circadian sleep/wake cycle, sleep;0.00935054721107016!GO:0022410;circadian sleep/wake cycle process;0.00935054721107016!GO:0042749;regulation of circadian sleep/wake cycle;0.00935054721107016!GO:0005885;Arp2/3 protein complex;0.00948574295380739!GO:0004576;oligosaccharyl transferase activity;0.00964199469613101!GO:0006644;phospholipid metabolic process;0.0096435327187875!GO:0007265;Ras protein signal transduction;0.00969161516733696!GO:0008601;protein phosphatase type 2A regulator activity;0.00988634538117834!GO:0044262;cellular carbohydrate metabolic process;0.0100760290941903!GO:0043021;ribonucleoprotein binding;0.0104269127770419!GO:0031114;regulation of microtubule depolymerization;0.010683459433336!GO:0007026;negative regulation of microtubule depolymerization;0.010683459433336!GO:0006891;intra-Golgi vesicle-mediated transport;0.0106988909108181!GO:0006325;establishment and/or maintenance of chromatin architecture;0.0110287624475181!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0112321669180809!GO:0008139;nuclear localization sequence binding;0.0113054731509821!GO:0033673;negative regulation of kinase activity;0.0118084974097294!GO:0006469;negative regulation of protein kinase activity;0.0118084974097294!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0121128143834486!GO:0005048;signal sequence binding;0.0121420209846117!GO:0016408;C-acyltransferase activity;0.0125656784575449!GO:0030663;COPI coated vesicle membrane;0.0128816443033863!GO:0030126;COPI vesicle coat;0.0128816443033863!GO:0000059;protein import into nucleus, docking;0.0129763532823652!GO:0008026;ATP-dependent helicase activity;0.0136660316767701!GO:0051168;nuclear export;0.0138080284002968!GO:0004386;helicase activity;0.0140167068509023!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0141016560595424!GO:0051726;regulation of cell cycle;0.0141187831569925!GO:0001558;regulation of cell growth;0.0142631790759795!GO:0008186;RNA-dependent ATPase activity;0.0144338758824234!GO:0030132;clathrin coat of coated pit;0.0144899226159131!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0144899226159131!GO:0045047;protein targeting to ER;0.0144899226159131!GO:0030137;COPI-coated vesicle;0.0147835214905926!GO:0015629;actin cytoskeleton;0.0152338735602607!GO:0031902;late endosome membrane;0.0159145687970214!GO:0000074;regulation of progression through cell cycle;0.0163779082878785!GO:0005815;microtubule organizing center;0.0164116950827777!GO:0016050;vesicle organization and biogenesis;0.0170766800192178!GO:0030384;phosphoinositide metabolic process;0.017140551155558!GO:0009966;regulation of signal transduction;0.0179339139762738!GO:0050839;cell adhesion molecule binding;0.0182122734511154!GO:0009892;negative regulation of metabolic process;0.0185931238368866!GO:0006402;mRNA catabolic process;0.0186888197357342!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0188448862193313!GO:0008320;protein transmembrane transporter activity;0.0189021453249461!GO:0048154;S100 beta binding;0.0189021453249461!GO:0043681;protein import into mitochondrion;0.019345738572419!GO:0030569;chymotrypsin inhibitor activity;0.0195987469544031!GO:0005869;dynactin complex;0.0196628240226556!GO:0030742;GTP-dependent protein binding;0.0197019329059336!GO:0031124;mRNA 3'-end processing;0.0197019329059336!GO:0006323;DNA packaging;0.0197019329059336!GO:0019208;phosphatase regulator activity;0.0198029157326637!GO:0030658;transport vesicle membrane;0.0199403865035662!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0199417146687863!GO:0009083;branched chain family amino acid catabolic process;0.0201001121364077!GO:0004721;phosphoprotein phosphatase activity;0.0201001121364077!GO:0008286;insulin receptor signaling pathway;0.0207501094823894!GO:0006839;mitochondrial transport;0.0208627147302367!GO:0007006;mitochondrial membrane organization and biogenesis;0.0208627147302367!GO:0051348;negative regulation of transferase activity;0.0209495000695759!GO:0007242;intracellular signaling cascade;0.021140058208799!GO:0046488;phosphatidylinositol metabolic process;0.021710641809947!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0226702816418621!GO:0033116;ER-Golgi intermediate compartment membrane;0.0226936311767923!GO:0001508;regulation of action potential;0.0228943827517342!GO:0000096;sulfur amino acid metabolic process;0.0230294314858493!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0235371238946708!GO:0051539;4 iron, 4 sulfur cluster binding;0.0237450693299645!GO:0046489;phosphoinositide biosynthetic process;0.0241936846708832!GO:0051129;negative regulation of cellular component organization and biogenesis;0.024249622368199!GO:0035035;histone acetyltransferase binding;0.0253403993302425!GO:0006631;fatty acid metabolic process;0.0253576445423687!GO:0051427;hormone receptor binding;0.0256319296168728!GO:0005856;cytoskeleton;0.0256385850568579!GO:0050767;regulation of neurogenesis;0.0280327581525085!GO:0008312;7S RNA binding;0.0283948672160728!GO:0031324;negative regulation of cellular metabolic process;0.028878159070055!GO:0007050;cell cycle arrest;0.0296590678913435!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0296593294170076!GO:0032787;monocarboxylic acid metabolic process;0.0296964182763301!GO:0045454;cell redox homeostasis;0.0304191990647454!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0304249316446815!GO:0050750;low-density lipoprotein receptor binding;0.0305098648093078!GO:0045947;negative regulation of translational initiation;0.0305098648093078!GO:0016125;sterol metabolic process;0.0305675320271848!GO:0030127;COPII vesicle coat;0.0306663068310665!GO:0012507;ER to Golgi transport vesicle membrane;0.0306663068310665!GO:0030660;Golgi-associated vesicle membrane;0.0310577609423093!GO:0018196;peptidyl-asparagine modification;0.0330871477665735!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0330871477665735!GO:0044448;cell cortex part;0.0333695308454561!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0334492053575204!GO:0004004;ATP-dependent RNA helicase activity;0.033491079551018!GO:0030320;cellular monovalent inorganic anion homeostasis;0.033491079551018!GO:0055083;monovalent inorganic anion homeostasis;0.033491079551018!GO:0055064;chloride ion homeostasis;0.033491079551018!GO:0030644;cellular chloride ion homeostasis;0.033491079551018!GO:0006611;protein export from nucleus;0.033491079551018!GO:0006818;hydrogen transport;0.0341872296525287!GO:0019843;rRNA binding;0.0344884173249541!GO:0031123;RNA 3'-end processing;0.035081392315677!GO:0017166;vinculin binding;0.0354278414295612!GO:0016615;malate dehydrogenase activity;0.0362676277979554!GO:0048037;cofactor binding;0.0367765453523221!GO:0004185;serine carboxypeptidase activity;0.0371188389287937!GO:0042026;protein refolding;0.0371188389287937!GO:0019911;structural constituent of myelin sheath;0.0376529504774345!GO:0006633;fatty acid biosynthetic process;0.03785440236478!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0379996579628597!GO:0019894;kinesin binding;0.0380447160394262!GO:0016272;prefoldin complex;0.0385669511227234!GO:0006974;response to DNA damage stimulus;0.0386413154616702!GO:0051674;localization of cell;0.0387775232469768!GO:0006928;cell motility;0.0387775232469768!GO:0003746;translation elongation factor activity;0.0390008741981653!GO:0035257;nuclear hormone receptor binding;0.0401470002367222!GO:0006399;tRNA metabolic process;0.0405747480566129!GO:0043086;negative regulation of catalytic activity;0.0408199204793428!GO:0019904;protein domain specific binding;0.0408302327320585!GO:0003690;double-stranded DNA binding;0.0411649382231916!GO:0009165;nucleotide biosynthetic process;0.0421110356170366!GO:0032287;myelin maintenance in the peripheral nervous system;0.0428584336615755!GO:0032838;cell projection cytoplasm;0.0428584336615755!GO:0033081;regulation of T cell differentiation in the thymus;0.0428584336615755!GO:0043217;myelin maintenance;0.0428584336615755!GO:0060087;relaxation of vascular smooth muscle;0.0428584336615755!GO:0032839;dendrite cytoplasm;0.0428584336615755!GO:0043488;regulation of mRNA stability;0.0434719939305482!GO:0043487;regulation of RNA stability;0.0434719939305482!GO:0045296;cadherin binding;0.0439462986150963!GO:0006661;phosphatidylinositol biosynthetic process;0.0440385013297567!GO:0016311;dephosphorylation;0.0442353086207974!GO:0005788;endoplasmic reticulum lumen;0.0443960675682906!GO:0006626;protein targeting to mitochondrion;0.0451025118846967!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0451877999623568!GO:0001578;microtubule bundle formation;0.0456761571352638!GO:0009066;aspartate family amino acid metabolic process;0.0460473001106033!GO:0015682;ferric iron transport;0.0460700633607373!GO:0015091;ferric iron transmembrane transporter activity;0.0460700633607373!GO:0031643;positive regulation of myelination;0.0460700633607373!GO:0031371;ubiquitin conjugating enzyme complex;0.0466831639609673!GO:0006665;sphingolipid metabolic process;0.0466831639609673!GO:0005801;cis-Golgi network;0.0466959538083361!GO:0007266;Rho protein signal transduction;0.0468208151389683!GO:0030134;ER to Golgi transport vesicle;0.0481149069076407!GO:0030911;TPR domain binding;0.0481236994246708!GO:0015992;proton transport;0.0484488489798696!GO:0019888;protein phosphatase regulator activity;0.0486614092465503!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0489976757085371!GO:0019902;phosphatase binding;0.0490120428629543!GO:0051252;regulation of RNA metabolic process;0.0492024818803457
|sample_id=10174
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=medulla oblongata
|top_motifs=SOX5:3.73852389428;RFX1:3.59911245011;NKX3-2:3.07160350291;NFIX:3.03742725293;HOX{A6,A7,B6,B7}:3.01367345516;RFX2..5_RFXANK_RFXAP:2.96883014734;SOX2:2.83389199597;MTF1:2.76675141421;PAX4:2.3334223281;SOX{8,9,10}:2.16565126765;FOXP3:2.13793301435;STAT2,4,6:2.08432265958;MYFfamily:2.07894191474;NR3C1:2.05130457441;ZFP161:1.96828194083;PAX6:1.96146279976;PRRX1,2:1.95897242385;NHLH1,2:1.95866653585;GATA4:1.92564710159;REST:1.90724767683;CUX2:1.87352772271;OCT4_SOX2{dimer}:1.83999174362;FOXD3:1.83921996153;MED-1{core}:1.79549051118;MYBL2:1.79422450572;ATF2:1.79015389374;BPTF:1.77374045288;PRDM1:1.73350911724;GFI1B:1.72251128589;HIC1:1.68913669486;LMO2:1.68537216683;LHX3,4:1.67355392324;SMAD1..7,9:1.6436001566;DBP:1.63497727766;NANOG:1.59214977464;RREB1:1.58100180233;MTE{core}:1.5123025682;GTF2I:1.51062084646;KLF4:1.50607166774;FOX{D1,D2}:1.4859417241;SOX17:1.45685450098;SP1:1.45465452388;EBF1:1.43887256893;TGIF1:1.42139109652;HBP1_HMGB_SSRP1_UBTF:1.40968886089;ZBTB6:1.4061889777;JUN:1.37446624518;ZNF423:1.31214314437;FOXP1:1.30334277302;ZIC1..3:1.25577401965;CRX:1.24113799459;RBPJ:1.21681503308;ZNF384:1.19254709091;AR:1.19100514276;EP300:1.19044039304;TLX1..3_NFIC{dimer}:1.15354075389;TFAP2B:1.14955122701;IKZF2:1.14777185207;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.13921893462;TFAP2{A,C}:1.13754577242;MAZ:1.12677761518;PATZ1:1.11635987969;LEF1_TCF7_TCF7L1,2:1.09634015818;XBP1:1.05292719709;HOXA9_MEIS1:1.03372699047;FOXN1:0.989980378414;HMX1:0.944733914406;MZF1:0.913958695544;EGR1..3:0.846097458353;POU6F1:0.841499428429;BREu{core}:0.838892258448;ATF6:0.833369090331;NRF1:0.813204281226;IRF7:0.805456313663;SREBF1,2:0.780424604997;PAX5:0.777556325313;RORA:0.767600981505;POU3F1..4:0.723877276558;STAT1,3:0.722675415314;FOXO1,3,4:0.72236762732;POU5F1:0.685482523307;NKX6-1,2:0.674166366664;VSX1,2:0.663155958103;FOX{I1,J2}:0.662285774645;ZBTB16:0.65451545166;PITX1..3:0.64219333911;PAX2:0.640073451471;HSF1,2:0.636903075947;ESRRA:0.573596072156;GTF2A1,2:0.550298943906;T:0.528184700285;CREB1:0.481742922747;ADNP_IRX_SIX_ZHX:0.441237434583;ONECUT1,2:0.433743547239;NFIL3:0.41419096618;TBP:0.40657997523;NKX2-3_NKX2-5:0.401128226928;ZNF143:0.349065788325;GCM1,2:0.347350029265;TLX2:0.219352291941;ZEB1:0.205237601591;GFI1:0.202865453268;GZF1:0.18459104525;AHR_ARNT_ARNT2:0.164382711674;MAFB:0.151104177023;HOX{A4,D4}:0.131679131839;ALX1:0.112632028646;NKX2-1,4:0.100404757987;EVI1:0.0992990782564;FOX{F1,F2,J1}:0.089013969198;ATF4:0.0758522137683;MYOD1:0.0594988742829;TFAP4:0.0550710212733;ALX4:0.000300607215567;IKZF1:-0.00985820824652;CEBPA,B_DDIT3:-0.0201351377822;MEF2{A,B,C,D}:-0.0328992096424;NR1H4:-0.04385136599;NFY{A,B,C}:-0.0485377587531;GATA6:-0.0515791236377;NKX3-1:-0.0579756660693;ATF5_CREB3:-0.0640509811726;TFDP1:-0.0858991084758;HMGA1,2:-0.102611413977;CDC5L:-0.121074707773;NFE2L2:-0.135189841296;HNF4A_NR2F1,2:-0.149006377477;FOXM1:-0.155998098725;IRF1,2:-0.157542861742;TEAD1:-0.17317734491;NFATC1..3:-0.186382572606;TOPORS:-0.208925429356;SNAI1..3:-0.21881925511;HNF1A:-0.227294865234;bHLH_family:-0.236728988832;AIRE:-0.264951219161;POU1F1:-0.288175996907;NANOG{mouse}:-0.304301604875;PDX1:-0.326752427554;SPZ1:-0.328314466605;XCPE1{core}:-0.334560431538;NR5A1,2:-0.346913797065;FOXA2:-0.352359272385;PAX8:-0.371931659716;DMAP1_NCOR{1,2}_SMARC:-0.38762999841;HAND1,2:-0.412901489894;TP53:-0.421748006623;NFE2L1:-0.4273088989;UFEwm:-0.442536577023;ETS1,2:-0.469099062941;ARID5B:-0.469754120753;NFE2:-0.489656400098;FOXL1:-0.493134341163;NR6A1:-0.498477806962;TBX4,5:-0.502118417944;HIF1A:-0.533429967239;ZNF238:-0.540974985889;TFCP2:-0.574043499815;CDX1,2,4:-0.599101776787;HLF:-0.612773898066;GLI1..3:-0.653230493962;SPIB:-0.685820287393;SPI1:-0.704916916716;FOXQ1:-0.717705720772;NKX2-2,8:-0.756958778481;TEF:-0.773991117664;BACH2:-0.796809583503;TAL1_TCF{3,4,12}:-0.860398772999;PBX1:-0.863748865522;ELF1,2,4:-0.873057338851;FOS_FOS{B,L1}_JUN{B,D}:-0.8926974629;RXR{A,B,G}:-0.896709080856;YY1:-0.903491868116;SRF:-0.936135919851;PAX3,7:-1.01554692293;NFKB1_REL_RELA:-1.03515742381;FOSL2:-1.04036845825;PAX1,9:-1.05748184558;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.06573906197;E2F1..5:-1.20542886365;ELK1,4_GABP{A,B1}:-1.2133468359;RUNX1..3:-1.3369518627;MYB:-1.39574577155;RXRA_VDR{dimer}:-1.44321086116;ZNF148:-1.4843730486;PPARG:-1.54853988753;POU2F1..3:-1.56446540588;HES1:-1.5996582452;ESR1:-1.68279338919;STAT5{A,B}:-1.90595674403;HOX{A5,B5}:-2.28400706388;EN1,2:-2.90010190289
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10174-103C3;search_select_hide=table117:FF:10174-103C3
}}
}}

Latest revision as of 12:25, 3 June 2020

Name:medulla oblongata - adult, donor10196
Species:Human (Homo sapiens)
Library ID:CNhs13800
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemedulla oblongata
dev stageNA
sexfemale
age60
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005590
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13800 CAGE DRX008686 DRR009558
Accession ID Hg19

Library idBAMCTSS
CNhs13800 DRZ000983 DRZ002368
Accession ID Hg38

Library idBAMCTSS
CNhs13800 DRZ012333 DRZ013718
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
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Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural9.491671e-4
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.883
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.342
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat1.117
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.197
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.197
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral1.186
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.647
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.197
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.118
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.701
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.197
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0137
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.152
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.679
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.197
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.332
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.79
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0646
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.647
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.197
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.332
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.332
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.587
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.629
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.518
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.747
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.383
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.197
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.197
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.197
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.518
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.197
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13800

Jaspar motifP-value
MA0002.20.0156
MA0003.10.229
MA0004.10.159
MA0006.10.623
MA0007.10.681
MA0009.10.203
MA0014.10.787
MA0017.10.0437
MA0018.20.0509
MA0019.10.649
MA0024.10.981
MA0025.10.894
MA0027.10.149
MA0028.10.0301
MA0029.10.0975
MA0030.10.177
MA0031.10.568
MA0035.20.0164
MA0038.10.191
MA0039.20.419
MA0040.10.71
MA0041.10.723
MA0042.10.706
MA0043.10.999
MA0046.10.0928
MA0047.20.202
MA0048.10.0991
MA0050.10.0284
MA0051.10.141
MA0052.10.643
MA0055.10.00246
MA0057.10.992
MA0058.10.165
MA0059.10.0462
MA0060.10.613
MA0061.10.00221
MA0062.28.31146e-5
MA0065.20.00322
MA0066.10.0402
MA0067.10.623
MA0068.10.928
MA0069.10.666
MA0070.10.798
MA0071.10.0864
MA0072.10.849
MA0073.10.507
MA0074.10.218
MA0076.10.0561
MA0077.10.0341
MA0078.10.955
MA0079.20.998
MA0080.21.92145e-8
MA0081.10.0147
MA0083.10.079
MA0084.10.192
MA0087.10.0682
MA0088.10.145
MA0090.10.886
MA0091.10.221
MA0092.10.26
MA0093.10.212
MA0099.23.08268e-18
MA0100.10.551
MA0101.10.00107
MA0102.20.411
MA0103.10.0905
MA0104.20.228
MA0105.14.24989e-5
MA0106.10.0127
MA0107.19.84754e-4
MA0108.20.0864
MA0111.10.785
MA0112.20.00158
MA0113.10.835
MA0114.10.0314
MA0115.10.973
MA0116.10.00296
MA0117.10.714
MA0119.10.221
MA0122.10.232
MA0124.10.766
MA0125.10.0565
MA0131.10.886
MA0135.10.00252
MA0136.11.31597e-11
MA0137.20.00262
MA0138.20.272
MA0139.10.592
MA0140.10.0208
MA0141.10.0496
MA0142.10.221
MA0143.10.0165
MA0144.10.643
MA0145.10.369
MA0146.10.0144
MA0147.10.108
MA0148.10.233
MA0149.10.0267
MA0150.11.18537e-4
MA0152.10.215
MA0153.10.728
MA0154.10.0264
MA0155.10.624
MA0156.11.2805e-8
MA0157.10.943
MA0159.10.036
MA0160.10.166
MA0162.10.184
MA0163.11.14012e-8
MA0164.10.412
MA0258.10.0258
MA0259.10.486



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13800

Novel motifP-value
10.0542
100.0408
1000.485
1010.358
1020.904
1030.0156
1040.0426
1050.422
1060.0441
1070.256
1080.853
1090.00528
110.00917
1100.0507
1110.106
1120.703
1130.123
1140.0927
1150.709
1160.114
1170.00614
1180.143
1190.209
120.555
1200.118
1210.728
1220.776
1230.706
1240.215
1250.602
1260.262
1270.418
1280.45
1290.784
130.00769
1300.143
1310.0977
1320.319
1330.0572
1340.742
1350.0913
1360.0137
1370.72
1380.457
1390.0967
140.96
1400.981
1410.67
1420.801
1430.00973
1440.666
1450.369
1460.464
1470.805
1480.719
1490.106
150.065
1500.126
1510.647
1520.127
1530.723
1540.5
1550.383
1560.281
1570.352
1580.297
1590.0189
160.0581
1600.126
1610.125
1620.781
1630.721
1640.00633
1650.205
1660.385
1670.902
1680.467
1690.0169
170.0562
180.0211
190.416
20.877
200.23
210.0274
220.276
230.676
240.0837
250.593
269.29189e-4
270.663
280.954
290.00596
30.0294
300.604
310.647
320.00942
330.114
340.653
350.323
360.248
370.0351
380.412
390.615
40.673
400.11
410.272
420.208
430.0961
440.183
450.768
460.0218
470.0408
480.0266
490.208
50.866
500.4
510.197
520.917
530.644
540.377
550.985
560.629
570.322
580.487
590.0515
60.987
600.206
610.0697
620.209
630.226
640.142
650.232
660.0774
670.29
680.515
690.398
70.179
700.0261
710.00739
720.391
730.0491
740.803
750.00763
760.171
770.276
783.52932e-4
790.44
80.0804
800.573
810.435
820.882
830.0267
840.391
850.615
860.108
874.00928e-4
880.56
890.097
90.661
900.146
910.551
920.814
930.683
940.0874
950.0257
960.993
970.851
980.196
990.659



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13800


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001896 (medulla oblongata)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0002298 (brainstem)
0002028 (hindbrain)
0005290 (myelencephalon)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010038 (human medulla oblongata - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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