FFCP PHASE1:Hg19::chr9:128246911..128246949,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:128246911..128246949,- to FFCP PHASE1:Hg19::chr9:128246911..128246949,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79109 | |EntrezGene=79109 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18752 | |HGNC=18752 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-131bp_to_ENST00000444226_5end | |||
|cluster_id=chr9:128246911..128246949,- | |||
|coexpression_cluster_id=C1769 | |||
|description=CAGE_peak_4_at_MAPKAP1_5end | |||
|id=chr9:128246911..128246949,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002504;1.13e-11;3!CL:1000279;1.13e-11;3!CL:1000280;1.13e-11;3!CL:0002622;1.59e-11;3!CL:0002600;2.08e-08;2!CL:1000487;7.51e-08;2!CL:0002195;1.03e-07;2!CL:0002571;1.03e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002504,1.24e-11,3;CL:1000279,1.24e-11,3;CL:1000280,1.24e-11,3;CL:0002622,1.54e-11,3;CL:0002600,2.00e-08,2;CL:1000487,7.01e-08,2;CL:0002195,8.64e-08,2;CL:0002571,8.64e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;3.88e-12;3!DOID:127;3.88e-12;3!DOID:0060072;3.37e-09;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,3.89e-12,3;DOID:127,3.89e-12,3;DOID:0060072,3.37e-09,4 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.33e-16!115;UBERON:0001049!9.77e-11!57;UBERON:0005068!9.77e-11!57;UBERON:0006241!9.77e-11!57;UBERON:0007135!9.77e-11!57;UBERON:0003076!1.40e-10!15;UBERON:0003057!1.40e-10!15;UBERON:0001017!6.10e-10!82;UBERON:0002616!8.13e-10!59;UBERON:0000062!4.44e-09!511;UBERON:0005743!4.55e-09!86;UBERON:0004733!5.98e-09!12;UBERON:0002028!5.98e-09!12;UBERON:0007277!5.98e-09!12;UBERON:0002298!7.50e-09!8;UBERON:0000955!1.18e-08!69;UBERON:0006238!1.18e-08!69;UBERON:0000059!2.33e-08!11;UBERON:0004732!4.36e-08!13;UBERON:0001155!4.68e-08!9;UBERON:0000481!4.81e-08!347;UBERON:0000475!6.82e-08!365;UBERON:0001046!1.13e-07!19;UBERON:0000162!1.67e-07!14;UBERON:0001353!1.67e-07!14;UBERON:0000163!1.67e-07!14;UBERON:0006866!1.67e-07!14;UBERON:0000164!1.67e-07!14;UBERON:0000931!1.67e-07!14;UBERON:0000073!2.09e-07!94;UBERON:0001016!2.09e-07!94;UBERON:0004921!2.57e-07!129;UBERON:0004185!2.57e-07!129;UBERON:0002308!7.14e-07!9;UBERON:0000125!7.14e-07!9;UBERON:0004122!7.41e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.27e-17;17!UBERON:0005409;2.58e-16;22!UBERON:0002298;4.46e-15;6!UBERON:0000059;5.78e-15;11!UBERON:0004733;5.30e-14;12!UBERON:0002028;5.30e-14;12!UBERON:0001155;1.39e-13;9!UBERON:0004732;7.64e-13;13!UBERON:0001896;5.01e-12;3!UBERON:0005290;5.01e-12;3!UBERON:0004921;1.05e-11;33!UBERON:0002367;6.43e-11;11!UBERON:0010147;6.43e-11;11!UBERON:0000077;7.35e-11;27!UBERON:0003937;5.93e-10;12!UBERON:0005399;5.93e-10;12!UBERON:0002148;7.51e-08;2!UBERON:0006331;7.51e-08;2!UBERON:0009662;7.51e-08;2!UBERON:0002108;9.40e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,3.21e-18,15;UBERON:0003057,3.21e-18,15;UBERON:0000160,1.38e-17,17;UBERON:0004921,2.76e-17,118;UBERON:0005409,8.83e-17,25;UBERON:0011216,3.01e-16,223;UBERON:0000059,4.82e-15,11;UBERON:0002298,5.65e-15,6;UBERON:0000162,9.46e-15,14;UBERON:0001353,9.46e-15,14;UBERON:0000163,9.46e-15,14;UBERON:0006866,9.46e-15,14;UBERON:0000164,9.46e-15,14;UBERON:0000931,9.46e-15,14;UBERON:0004733,5.93e-14,12;UBERON:0002028,5.93e-14,12;UBERON:0007277,5.93e-14,12;UBERON:0004122,1.12e-13,15;UBERON:0001155,1.18e-13,9;UBERON:0001046,1.98e-13,19;UBERON:0004119,3.96e-13,160;UBERON:0000925,3.96e-13,160;UBERON:0006595,3.96e-13,160;UBERON:0004732,8.46e-13,13;UBERON:0001007,8.81e-13,145;UBERON:0001555,8.81e-13,145;UBERON:0007026,8.81e-13,145;UBERON:0001896,4.84e-12,3;UBERON:0005290,4.84e-12,3;UBERON:0010096,4.84e-12,3;UBERON:0002367,5.42e-11,11;UBERON:0010147,5.42e-11,11;UBERON:0009846,5.42e-11,11;UBERON:0003353,5.42e-11,11;UBERON:0004902,5.42e-11,11;UBERON:0003820,5.42e-11,11;UBERON:0009847,5.42e-11,11;UBERON:0003937,5.08e-10,12;UBERON:0005399,5.08e-10,12;UBERON:0000077,5.23e-10,29;UBERON:0007023,2.01e-08,114;UBERON:0002148,1.03e-07,2;UBERON:0006331,1.03e-07,2;UBERON:0009662,1.03e-07,2;UBERON:0005423,1.96e-07,581;UBERON:0005156,2.17e-07,59;UBERON:0000990,2.17e-07,59;UBERON:0000922,4.49e-07,592;UBERON:0000923,7.13e-07,560;UBERON:0010316,7.13e-07,560;UBERON:0005291,7.13e-07,560;UBERON:0006598,7.13e-07,560;UBERON:0010317,7.13e-07,560;UBERON:0002532,7.13e-07,560;UBERON:0002050,9.65e-07,564 | |||
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| ||
|short_description=p4@MAPKAP1 | |||
}} | }} |
Latest revision as of 02:01, 25 September 2015
Short description: | p4@MAPKAP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_MAPKAP1_5end |
Coexpression cluster: | C1769_sacrococcigeal_rectum_leiomyoma_Prostate_smooth_small_Smooth |
Association with transcript: | -131bp_to_ENST00000444226_5end |
EntrezGene: | MAPKAP1 |
HGNC: | 18752 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
enteric smooth muscle cell | 1.24e-11 | 3 |
smooth muscle cell of large intestine | 1.24e-11 | 3 |
smooth muscle cell of colon | 1.24e-11 | 3 |
prostate stromal cell | 1.54e-11 | 3 |
smooth muscle cell of trachea | 2.00e-08 | 2 |
smooth muscle cell of prostate | 7.01e-08 | 2 |
hepatic stem cell | 8.64e-08 | 2 |
hepatic mesenchymal stem cell | 8.64e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 3.89e-12 | 3 |
leiomyoma | 3.89e-12 | 3 |
benign neoplasm | 3.37e-09 | 4 |