FFCP PHASE1:Hg19::chr7:27183291..27183324,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:27183291..27183324,- to FFCP PHASE1:Hg19::chr7:27183291..27183324,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3202 | |EntrezGene=3202 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5106 | |HGNC=5106 | ||
|TSSclassifier=strong | |||
|UniProt=P20719 | |UniProt=P20719 | ||
|association_with_transcript=-4bp_to_ENST00000222726,NM_019102,uc003syn.1_5end | |||
|cluster_id=chr7:27183291..27183324,- | |||
|coexpression_cluster_id=C4680 | |||
|description=CAGE_peak_1_at_HOXA5_5end | |||
|id=chr7:27183291..27183324,- | |||
|ontology_enrichment_celltype=CL:0000222!1.14e-12!119;CL:1000497!5.87e-10!18;CL:0002518!5.87e-10!18;CL:0000076!2.92e-09!62;CL:0002139!2.95e-09!24;CL:0000071!3.21e-09!18;CL:0002546!3.21e-09!18;CL:1000449!8.24e-09!16;CL:0000213!1.52e-08!57;CL:0000215!1.52e-08!57;CL:1000507!3.93e-08!12;CL:1000494!3.93e-08!12;CL:0002334!2.38e-07!12;CL:0002078!3.10e-07!44;CL:0002681!3.98e-07!13;CL:0002584!3.98e-07!13;CL:0000115!4.08e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:1000497;3.50e-13;17!CL:0002518;3.50e-13;17!CL:1000449;1.62e-11;15!CL:0000071;7.18e-10;18!CL:1000507;2.53e-09;10!CL:1000494;2.53e-09;10!CL:0002681;4.75e-09;12!CL:0002584;4.75e-09;12!CL:0002334;1.48e-08;12!CL:0002543;6.79e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,2.36e-13,17;CL:0002518,2.36e-13,17;CL:1000449,1.16e-11,15;CL:0000071,1.50e-09,18;CL:0002546,1.50e-09,18;CL:1000507,1.53e-09,10;CL:1000494,1.53e-09,10;CL:0002681,3.53e-09,12;CL:0002584,3.53e-09,12;CL:0000222,4.83e-09,121;CL:0002334,7.15e-09,12;CL:0000213,1.27e-07,58;CL:0000215,1.27e-07,58;CL:0002543,7.02e-07,6 | |||
|ontology_enrichment_development_v019=CL:0002546;7.18e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0009569!2.30e-14!113;UBERON:0002100!7.18e-13!216;UBERON:0000489!1.79e-12!32;UBERON:0003914!1.07e-11!118;UBERON:0002113!5.38e-11!27;UBERON:0003918!5.38e-11!27;UBERON:0005095!5.38e-11!27;UBERON:0007687!5.38e-11!27;UBERON:0001008!8.01e-11!45;UBERON:0006554!2.15e-10!44;UBERON:0000080!4.83e-10!18;UBERON:0002120!4.83e-10!18;UBERON:0004875!4.83e-10!18;UBERON:0005721!4.83e-10!18;UBERON:0005754!4.83e-10!18;UBERON:0007297!4.83e-10!18;UBERON:0005177!5.34e-10!107;UBERON:0003887!9.35e-10!21;UBERON:0006555!1.53e-09!17;UBERON:0005103!1.53e-09!17;UBERON:0000083!1.53e-09!17;UBERON:0009201!1.53e-09!17;UBERON:0004819!1.53e-09!17;UBERON:0006553!1.53e-09!17;UBERON:0003074!1.53e-09!17;UBERON:0003060!1.53e-09!17;UBERON:0002417!2.54e-09!61;UBERON:0000916!2.54e-09!61;UBERON:0001986!3.21e-09!18;UBERON:0004638!3.21e-09!18;UBERON:0004852!3.21e-09!18;UBERON:0004876!3.52e-09!20;UBERON:0000487!5.67e-09!22;UBERON:0004211!8.24e-09!16;UBERON:0001285!8.24e-09!16;UBERON:0007684!8.24e-09!16;UBERON:0003220!8.24e-09!16;UBERON:0004208!8.24e-09!16;UBERON:0001981!1.11e-08!60;UBERON:0007500!1.11e-08!60;UBERON:0004537!1.11e-08!60;UBERON:0006965!1.11e-08!60;UBERON:0000490!2.88e-08!138;UBERON:0000055!3.18e-08!69;UBERON:0009773!3.93e-08!12;UBERON:0001231!3.93e-08!12;UBERON:0004810!3.93e-08!12;UBERON:0000926!7.94e-08!448;UBERON:0004120!7.94e-08!448;UBERON:0006603!7.94e-08!448;UBERON:0003064!1.24e-07!37;UBERON:0006914!1.29e-07!25;UBERON:0005172!1.70e-07!55;UBERON:0005173!1.70e-07!55;UBERON:0003886!2.21e-07!63;UBERON:0003103!2.92e-07!69;UBERON:0001225!3.98e-07!13;UBERON:0008987!3.98e-07!13;UBERON:0000058!6.31e-07!26;UBERON:0000464!7.01e-07!104;UBERON:0001637!9.81e-07!42;UBERON:0003509!9.81e-07!42;UBERON:0004572!9.81e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0000489;2.76e-16;29!UBERON:0002113;6.14e-14;24!UBERON:0011143;6.14e-14;24!UBERON:0006554;3.96e-13;30!UBERON:0001008;3.96e-13;30!UBERON:0006555;1.62e-11;15!UBERON:0004819;1.62e-11;15!UBERON:0001285;1.62e-11;15!UBERON:0007684;1.62e-11;15!UBERON:0000487;2.39e-10;22!UBERON:0004638;7.18e-10;18!UBERON:0001986;7.18e-10;18!UBERON:0004852;7.18e-10;18!UBERON:0004211;2.53e-09;10!UBERON:0009773;2.53e-09;10!UBERON:0001231;2.53e-09;10!UBERON:0004810;2.53e-09;10!UBERON:0001225;4.75e-09;12!UBERON:0008987;4.75e-09;12!UBERON:0006914;1.67e-08;25!UBERON:0000353;5.53e-08;15!UBERON:0003914;6.47e-08;74!UBERON:0009569;3.20e-07;110!UBERON:0002417;3.99e-07;58!UBERON:0000916;3.99e-07;58!UBERON:0000025;8.33e-07;93 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009569,7.54e-21,112;UBERON:0000489,2.62e-18,31;UBERON:0002113,8.03e-16,26;UBERON:0003918,8.03e-16,26;UBERON:0011143,8.03e-16,26;UBERON:0005095,8.03e-16,26;UBERON:0007687,8.03e-16,26;UBERON:0006555,9.64e-13,16;UBERON:0004819,9.64e-13,16;UBERON:0002100,1.29e-12,199;UBERON:0001008,2.37e-12,48;UBERON:0006554,9.06e-12,47;UBERON:0002417,9.33e-12,60;UBERON:0000916,9.33e-12,60;UBERON:0005177,9.78e-12,101;UBERON:0004211,1.16e-11,15;UBERON:0009773,1.16e-11,15;UBERON:0001231,1.16e-11,15;UBERON:0001285,1.16e-11,15;UBERON:0007684,1.16e-11,15;UBERON:0004208,1.16e-11,15;UBERON:0003103,1.06e-10,68;UBERON:0003914,2.42e-10,117;UBERON:0000487,4.71e-10,22;UBERON:0000915,1.27e-09,52;UBERON:0004638,1.50e-09,18;UBERON:0001986,1.50e-09,18;UBERON:0004852,1.50e-09,18;UBERON:0004810,1.53e-09,10;UBERON:0001225,3.53e-09,12;UBERON:0008987,3.53e-09,12;UBERON:0005172,5.38e-09,54;UBERON:0005173,5.38e-09,54;UBERON:0006914,2.95e-08,25;UBERON:0000353,3.93e-08,15;UBERON:0003104,4.27e-08,160;UBERON:0009142,4.27e-08,160;UBERON:0003887,2.49e-07,12;UBERON:0000080,2.62e-07,9;UBERON:0002120,2.62e-07,9;UBERON:0004875,2.62e-07,9;UBERON:0005721,2.62e-07,9;UBERON:0005754,2.62e-07,9;UBERON:0007297,2.62e-07,9;UBERON:0000025,6.76e-07,192;UBERON:0007500,7.48e-07,59;UBERON:0001981,7.48e-07,59;UBERON:0004537,7.48e-07,59;UBERON:0006965,7.48e-07,59;UBERON:0001851,9.40e-07,15 | |||
|phase1_expression=1.09007027562334,1.71280419112787,7.61153782118244,0,1.78784437770915,0.872338524100369,2.53299878168311,1.26343974685366,0,9.33788958705734,0,0,0,7.1784484716827,4.97096063591874,6.05092631806598,7.23233433628772,3.65155045193687,6.8310591830671,0,0,0.313454721478088,0,0,0,0,0,0,0.786728553697808,0,0.464448369948228,0,0,0,0,0,0,0,0.200544447470142,0.434021741431704,0,0,0,0,0.377875943688809,0,0.232429036905685,0,0,0,0,0,0.344745680736619,1.29096936716765,0,0,0.545812300115692,0,0.306083892370903,0.962787081228281,0.639337125799041,0,0.199463657621632,0,1.16083695451434,0.56738522469114,0,0,0,0.217188844705117,3.02699751316684,1.10483290796269,0,0,0,0,0,0,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0.087834785693126,4.6497571801688,0,0,0,0,0,0,0,0,0.79504962946682,1.72046919021225,1.04142150482278,0.56530794192401,2.09749718104953,3.02629846134074,1.04497483268405,0.775250277507987,0.71153252537342,0,0.805658634218294,6.0821768457481,2.19655851793353,1.10298924103761,4.86085168729056,7.23327799101046,3.59246996201872,3.60356737546631,4.5994991239765,4.74632829784064,3.11442964681692,0,0,0,0,0.12663051166458,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680593098960126,0.179389635688862,0,0.211931901159562,0,0,0.257640540045629,0.18611685633159,0,0,0.504867548488229,0.0920498986422993,0,0,0,0,0,0,0,0,0,0.232387885739037,0,0.252320850875628,0,0,0,0,0,0,0,0.337169380156203,0,0.110293972732394,0.435758888184812,0.237270619111097,0.269662616320329,0,0.38474715694639,2.95262181849859,0,0.8231480226628,1.47008711385542,0,0,0.590789906681404,0,0.122988438543114,0.171567810298526,0.219500570817251,1.1240175325762,0.402115889646523,0,0,0,0,0,0,0.866198686566443,0.925971025153221,0.570762456703795,0.790204397959275,0.858486162094873,0,0,0,0,0,0,1.25381931783988,2.90633938513962,2.68367875415648,0,0.088048434013226,0.207328115540772,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0.26593811658487,0,2.82928111688356,5.67396528093113,1.8649552531127,1.28680194292333,0,0,0,0,0,8.44030255766841,15.6876022548053,9.59740715347748,0,0,0,0,0,0,0.723906533337896,0,0.358121926479791,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,5.27573414392302,8.00272833695483,5.69656549769445,0,0,0,0,2.10662269809403,2.27407504055985,0,2.65690239414175,2.21243002250044,0.260650843404249,0,0,0,0,0,0,1.66435439510497,0,0.744323423456331,1.53461973288062,3.36792113319688,11.5325234330131,3.58195074346692,6.27330292460069,2.96836132889982,1.85051632563187,3.55123450626254,1.97105174433142,5.19254429183621,1.51073491997947,0.120859449591622,1.60405176242628,0.828728900423067,0.114814448164607,2.00300284807389,0,3.15839729035188,6.2382423054576,4.70609861506113,1.46139224653261,12.8772987249308,2.27466768141793,3.06168669497728,3.45465465763423,7.71136263451447,4.87703587578935,3.51182841698397,1.78413391131527,1.66215201785745,3.80587083027703,0,0,0,0,0,7.93415789687461,1.09883357782012,0.907604499126468,0,0.650060246036521,0,0.773365746336976,4.1593126620954,3.99109554287937,0.827019434907183,0.107420244868274,0,2.21589231281862,0.801288320820636,0,0,0,0,1.85938219718914,0.62962469366128,2.7881490806424,0.924100740528266,0,0.869932992075073,0.37064843820784,0.143124886741991,0,0,0.953150969619124,3.83846686967001,5.99114583247489,0.636406495851874,1.56989728039846,0.179872457583315,0,0.471249609382746,0,0,0,1.95053495635836,25.8336299009161,8.45201174054043,0.136499911407986,0,9.04064932961942,17.643690993476,0,0,4.05142873986681,15.7414740491192,0.608731130888112,0,0,0,0,0.35667105148125,0,0,0,0,0,0,0,0,6.21349085126742,1.29151611801369,0,0.886860307073351,1.1486170010348,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,5.51857298466744,1.40398589056729,0,0.313359791546046,0,0,0,0,0,2.40453741329035,0.307240764308458,1.11838053946208,0.667396566847634,0,0,0,0,0,0,0.37428108081644,0,0,0,9.94476513822446,0,0.593929361665277,0,0,0,0,0,0.422250816255987,3.18796781201712,0.552567831062295,1.25966373927138,1.22722419002586,0,0,0,0,0,1.7755813014648,0,0,0,0,0,0.260427761085233,0,3.62499787717397,0,0,0,0,0,0.694499979733169,0,0,0,0,0,0,0.544692317594951,0,0.153900517007594,0,0.23056390438806,0,0.325942115766024,0.638002319463839,0.366390373607449,0,0,0,0,0,0,0,0,0,2.10998064528027,29.5451382768057,0.706765357169704,0,1.99052386215701,1.76915129006678,2.4441205797345,0,0,0,0.067401132980677,4.81546588379273,0,0,0,0,5.52418163989147,3.62972148145992,0.30607276163049,0.063186579628488,3.30711522711884,9.43562541714949,0.664653872707185,0.992975867626496,0.941798755221676,0,0,0,6.24815058006471,2.84177952501695,1.30588809870604,8.91106008034354,1.89184635718778,0.19351266257817,0.950161122120412,0.410577285266046,5.62536295632833,0,0,0,0,0,0,0,0.426905989478705,0.19980960958213,1.58499458869517,24.2817583871741,5.49103993158287,0,0,0.942776138467182,0.27180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| ||
|short_description=p1@HOXA5 | |||
}} | }} |
Latest revision as of 01:30, 18 September 2015
Short description: | p1@HOXA5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXA5_5end |
Coexpression cluster: | C4680_Smooth_clear_gastric_Mesothelial_glioma_rectum_melanoma |
Association with transcript: | -4bp_to_ENST00000222726, NM_019102, uc003syn.1_5end |
EntrezGene: | HOXA5 |
HGNC: | 5106 |
UniProt: | P20719 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 2.36e-13 | 17 |
kidney epithelial cell | 2.36e-13 | 17 |
epithelial cell of nephron | 1.16e-11 | 15 |
blood vessel endothelial cell | 1.50e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.50e-09 | 18 |
kidney tubule cell | 1.53e-09 | 10 |
nephron tubule epithelial cell | 1.53e-09 | 10 |
kidney cortical cell | 3.53e-09 | 12 |
renal cortical epithelial cell | 3.53e-09 | 12 |
mesodermal cell | 4.83e-09 | 121 |
preadipocyte | 7.15e-09 | 12 |
lining cell | 1.27e-07 | 58 |
barrier cell | 1.27e-07 | 58 |
vein endothelial cell | 7.02e-07 | 6 |