FFCP PHASE1:Hg19::chr7:140227291..140227300,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:140227291..140227300,- to FFCP PHASE1:Hg19::chr7:140227291..140227300,-: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr7:140227291..140227300,- | |||
|coexpression_cluster_id=C4659 | |||
|description=CAGE_peak_at_chr7:140227291..140227300,- | |||
|id=chr7:140227291..140227300,- | |||
|ontology_enrichment_celltype=CL:1000507!9.50e-11!12;CL:1000494!9.50e-11!12;CL:0000239!5.45e-08!3;CL:1000615!5.45e-08!3;CL:0002306!5.45e-08!3;CL:1000449!5.58e-08!16;CL:1000497!4.68e-07!18;CL:0002518!4.68e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:1000507;4.66e-26;10!CL:1000494;4.66e-26;10!CL:1000449;1.17e-17;15!CL:1000497;1.12e-15;17!CL:0002518;1.12e-15;17!CL:1000415;2.37e-15;2!CL:0000239;8.57e-11;3!CL:1000615;8.57e-11;3!CL:0002306;8.57e-11;3!CL:0002681;2.08e-10;12!CL:0002584;2.08e-10;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,4.66e-26,10;CL:1000494,4.66e-26,10;CL:1000449,1.17e-17,15;CL:1000497,1.12e-15,17;CL:0002518,1.12e-15,17;CL:1000415,2.05e-15,2;CL:0000239,8.99e-11,3;CL:1000615,8.99e-11,3;CL:0002306,8.99e-11,3;CL:0002681,2.13e-10,12;CL:0002584,2.13e-10,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002113!4.05e-11!27;UBERON:0003918!4.05e-11!27;UBERON:0005095!4.05e-11!27;UBERON:0007687!4.05e-11!27;UBERON:0009773!9.50e-11!12;UBERON:0001231!9.50e-11!12;UBERON:0004810!9.50e-11!12;UBERON:0000080!6.73e-10!18;UBERON:0002120!6.73e-10!18;UBERON:0004875!6.73e-10!18;UBERON:0005721!6.73e-10!18;UBERON:0005754!6.73e-10!18;UBERON:0007297!6.73e-10!18;UBERON:0000489!3.54e-09!32;UBERON:0003886!3.66e-09!63;UBERON:0004876!7.66e-09!20;UBERON:0000464!8.29e-09!104;UBERON:0003887!2.17e-08!21;UBERON:0002553!5.24e-08!70;UBERON:0006853!5.45e-08!3;UBERON:0007685!5.45e-08!3;UBERON:0004134!5.45e-08!3;UBERON:0004211!5.58e-08!16;UBERON:0001285!5.58e-08!16;UBERON:0007684!5.58e-08!16;UBERON:0003220!5.58e-08!16;UBERON:0004208!5.58e-08!16;UBERON:0000991!5.91e-08!21;UBERON:0009196!5.91e-08!21;UBERON:0009117!5.91e-08!21;UBERON:0005564!5.91e-08!21;UBERON:0006554!6.20e-08!44;UBERON:0001008!1.01e-07!45;UBERON:0004176!1.45e-07!22;UBERON:0006555!1.72e-07!17;UBERON:0005103!1.72e-07!17;UBERON:0000083!1.72e-07!17;UBERON:0009201!1.72e-07!17;UBERON:0004819!1.72e-07!17;UBERON:0006553!1.72e-07!17;UBERON:0003074!1.72e-07!17;UBERON:0003060!1.72e-07!17;UBERON:0003133!6.02e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;4.66e-26;10!UBERON:0009773;4.66e-26;10!UBERON:0001231;4.66e-26;10!UBERON:0004810;4.66e-26;10!UBERON:0002113;2.33e-19;24!UBERON:0011143;2.33e-19;24!UBERON:0006555;1.17e-17;15!UBERON:0004819;1.17e-17;15!UBERON:0001285;1.17e-17;15!UBERON:0007684;1.17e-17;15!UBERON:0000489;3.99e-16;29!UBERON:0006554;1.32e-15;30!UBERON:0001008;1.32e-15;30!UBERON:0006853;8.57e-11;3!UBERON:0007685;8.57e-11;3!UBERON:0004134;8.57e-11;3!UBERON:0002110;1.09e-10;3!UBERON:0001225;2.08e-10;12!UBERON:0008987;2.08e-10;12!UBERON:0005172;9.12e-10;52!UBERON:0005173;9.12e-10;52!UBERON:0001851;1.62e-08;15!UBERON:0000353;1.62e-08;15!UBERON:0002417;6.09e-08;58!UBERON:0000916;6.09e-08;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,4.66e-26,10;UBERON:0002113,6.44e-18,26;UBERON:0003918,6.44e-18,26;UBERON:0011143,6.44e-18,26;UBERON:0005095,6.44e-18,26;UBERON:0007687,6.44e-18,26;UBERON:0004211,1.17e-17,15;UBERON:0009773,1.17e-17,15;UBERON:0001231,1.17e-17,15;UBERON:0001285,1.17e-17,15;UBERON:0007684,1.17e-17,15;UBERON:0004208,1.17e-17,15;UBERON:0006555,1.32e-16,16;UBERON:0004819,1.32e-16,16;UBERON:0000489,4.03e-15,31;UBERON:0005172,1.91e-13,54;UBERON:0005173,1.91e-13,54;UBERON:0002417,3.89e-12,60;UBERON:0000916,3.89e-12,60;UBERON:0006853,8.99e-11,3;UBERON:0007685,8.99e-11,3;UBERON:0004134,8.99e-11,3;UBERON:0002110,9.90e-11,3;UBERON:0006242,9.90e-11,3;UBERON:0001225,2.13e-10,12;UBERON:0008987,2.13e-10,12;UBERON:0006554,3.78e-10,47;UBERON:0001008,6.02e-10,48;UBERON:0001851,1.65e-08,15;UBERON:0000353,1.65e-08,15;UBERON:0005177,2.54e-07,101;UBERON:0003103,3.80e-07,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35359883872224,0,0,2.92278449306521,0,0,0,0,0,0.270946437543853,0,0.764628819135115,0,2.68649705666614,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709522128141196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.84991942105343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02156551738102,0,0,0,0,0,0,0,0,0.484945082442097,0,0,0.137041924646751,0,0,0,1.52301758477914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0.105600336519406,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131545547125698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,1.28652859348783,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0,0,0,0.112131084345361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35359883872224,0,0,2.92278449306521,0,0,0,0,0,0.270946437543853,0,0.764628819135115,0,2.68649705666614,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0,0,0,0,0,0.709522128141196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.84991942105343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.02156551738102,0,0,0,0,0,0,0,0,0.484945082442097,0,0,0.137041924646751,0,0,0,1.52301758477914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0.105600336519406,0,0,0,0,0.25426853765475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0.303859956177382,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0,0,0.215649622793364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0.161475645631851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131545547125698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,1.28652859348783,0,0,0,0,0.103432995861895,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0.244482888365733,0,0,0,0 | ||
|short_description=p@chr7:140227291..140227300,- | |||
}} | }} |
Latest revision as of 06:42, 31 July 2015
Short description: | p@chr7:140227291..140227300, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:140227291..140227300, - |
Coexpression cluster: | C4659_endometrial_Renal_Wilms_testicular_gall_Smooth_leiomyoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 4.66e-26 | 10 |
nephron tubule epithelial cell | 4.66e-26 | 10 |
epithelial cell of nephron | 1.17e-17 | 15 |
kidney cell | 1.12e-15 | 17 |
kidney epithelial cell | 1.12e-15 | 17 |
epithelial cell of gall bladder | 2.05e-15 | 2 |
brush border epithelial cell | 8.99e-11 | 3 |
kidney cortex tubule cell | 8.99e-11 | 3 |
epithelial cell of proximal tubule | 8.99e-11 | 3 |
kidney cortical cell | 2.13e-10 | 12 |
renal cortical epithelial cell | 2.13e-10 | 12 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 4.66e-26 | 10 |
kidney | 6.44e-18 | 26 |
kidney mesenchyme | 6.44e-18 | 26 |
upper urinary tract | 6.44e-18 | 26 |
kidney rudiment | 6.44e-18 | 26 |
kidney field | 6.44e-18 | 26 |
nephron epithelium | 1.17e-17 | 15 |
renal tubule | 1.17e-17 | 15 |
nephron tubule | 1.17e-17 | 15 |
nephron | 1.17e-17 | 15 |
uriniferous tubule | 1.17e-17 | 15 |
nephrogenic mesenchyme | 1.17e-17 | 15 |
excretory tube | 1.32e-16 | 16 |
kidney epithelium | 1.32e-16 | 16 |
cavitated compound organ | 4.03e-15 | 31 |
abdomen element | 1.91e-13 | 54 |
abdominal segment element | 1.91e-13 | 54 |
abdominal segment of trunk | 3.89e-12 | 60 |
abdomen | 3.89e-12 | 60 |
renal cortex tubule | 8.99e-11 | 3 |
region of nephron tubule | 8.99e-11 | 3 |
proximal tubule | 8.99e-11 | 3 |
gallbladder | 9.90e-11 | 3 |
gall bladder primordium | 9.90e-11 | 3 |
cortex of kidney | 2.13e-10 | 12 |
renal parenchyma | 2.13e-10 | 12 |
urinary system structure | 3.78e-10 | 47 |
renal system | 6.02e-10 | 48 |
cortex | 1.65e-08 | 15 |
parenchyma | 1.65e-08 | 15 |
trunk region element | 2.54e-07 | 101 |
compound organ | 3.80e-07 | 68 |