FFCP PHASE1:Hg19::chr4:40517959..40517973,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:40517959..40517973,- to FFCP PHASE1:Hg19::chr4:40517959..40517973,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54502 | |EntrezGene=54502 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30358 | |HGNC=30358 | ||
|TSSclassifier=strong | |||
|UniProt=A0AV96 | |UniProt=A0AV96 | ||
|association_with_transcript=16bp_to_ENST00000381795,NM_019027,uc003gvd.2_5end | |||
|cluster_id=chr4:40517959..40517973,- | |||
|coexpression_cluster_id=C4410 | |||
|description=CAGE_peak_10_at_RBM47_5end | |||
|id=chr4:40517959..40517973,- | |||
|ontology_enrichment_celltype=CL:0000066!1.02e-11!254;CL:0000077!3.03e-10!19;CL:1000497!1.62e-07!18;CL:0002518!1.62e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:0000077;1.65e-15;19!CL:0000174;4.15e-10;3!CL:0000239;7.45e-10;3!CL:1000615;7.45e-10;3!CL:0002306;7.45e-10;3!CL:1000497;2.38e-08;17!CL:0002518;2.38e-08;17!CL:0002097;3.34e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,1.70e-15,19;CL:0000174,4.29e-10,3;CL:0000239,7.12e-10,3;CL:1000615,7.12e-10,3;CL:0002306,7.12e-10,3;CL:0000066,1.23e-08,253;CL:1000497,2.48e-08,17;CL:0002518,2.48e-08,17;CL:0002097,2.99e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0003104;3.02e-10;31!UBERON:0009497;2.57e-08;13!UBERON:0004161;6.21e-07;11 | |||
|ontology_enrichment_disease=DOID:305!3.00e-17!106;DOID:162!5.57e-15!235;DOID:14566!3.87e-14!239;DOID:0050687!2.39e-12!143;DOID:299!1.76e-10!25;DOID:0050686!2.44e-07!137;DOID:193!5.12e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:299;5.55e-09;25!DOID:3493;5.53e-08;2!DOID:3119;9.81e-08;14!DOID:4929;1.84e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:299,4.70e-09,25;DOID:3493,5.35e-08,2;DOID:3119,9.76e-08,14;DOID:4929,1.72e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0005172!2.80e-12!55;UBERON:0005173!2.80e-12!55;UBERON:0002417!7.58e-11!61;UBERON:0000916!7.58e-11!61;UBERON:0000466!9.27e-11!126;UBERON:0005177!2.01e-09!107;UBERON:0000058!5.31e-09!26;UBERON:0005409!9.47e-09!35;UBERON:0004921!2.48e-08!129;UBERON:0004185!2.48e-08!129;UBERON:0001007!3.30e-08!155;UBERON:0001555!3.30e-08!155;UBERON:0007026!3.30e-08!155;UBERON:0002113!6.56e-08!27;UBERON:0003918!6.56e-08!27;UBERON:0005095!6.56e-08!27;UBERON:0007687!6.56e-08!27;UBERON:0009856!8.93e-08!26;UBERON:0009569!1.26e-07!113;UBERON:0009497!2.25e-07!25;UBERON:0000015!2.25e-07!25;UBERON:0002423!2.25e-07!25;UBERON:0006235!2.25e-07!25;UBERON:0004161!2.25e-07!25;UBERON:0004119!4.29e-07!169;UBERON:0000925!4.29e-07!169;UBERON:0006595!4.29e-07!169;UBERON:0007499!4.67e-07!25;UBERON:0000160!4.93e-07!27;UBERON:0009854!5.13e-07!23 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;4.55e-22;22!UBERON:0000160;6.42e-21;17!UBERON:0004921;1.78e-12;33!UBERON:0005172;5.49e-12;52!UBERON:0005173;5.49e-12;52!UBERON:0002108;1.17e-11;4!UBERON:0002423;4.88e-11;25!UBERON:0000059;1.90e-10;11!UBERON:0006853;7.45e-10;3!UBERON:0007685;7.45e-10;3!UBERON:0004134;7.45e-10;3!UBERON:0001155;2.35e-09;9!UBERON:0002113;2.48e-09;24!UBERON:0011143;2.48e-09;24!UBERON:0001851;3.18e-09;15!UBERON:0002417;5.02e-08;58!UBERON:0000916;5.02e-08;58!UBERON:0002294;1.30e-07;7!UBERON:0001173;1.30e-07;7!UBERON:0000489;1.93e-07;29!UBERON:0006554;3.87e-07;30!UBERON:0001008;3.87e-07;30!UBERON:0001007;4.67e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.46e-21,17;UBERON:0005409,4.03e-19,25;UBERON:0005172,1.33e-18,54;UBERON:0005173,1.33e-18,54;UBERON:0002417,3.09e-16,60;UBERON:0000916,3.09e-16,60;UBERON:0002108,1.24e-11,4;UBERON:0009497,4.89e-11,25;UBERON:0000015,4.89e-11,25;UBERON:0002423,4.89e-11,25;UBERON:0006235,4.89e-11,25;UBERON:0004161,4.89e-11,25;UBERON:0005177,6.70e-11,101;UBERON:0000059,2.02e-10,11;UBERON:0002113,2.20e-10,26;UBERON:0003918,2.20e-10,26;UBERON:0011143,2.20e-10,26;UBERON:0005095,2.20e-10,26;UBERON:0007687,2.20e-10,26;UBERON:0006853,7.12e-10,3;UBERON:0007685,7.12e-10,3;UBERON:0004134,7.12e-10,3;UBERON:0009854,9.27e-10,23;UBERON:0001155,2.59e-09,9;UBERON:0001851,3.21e-09,15;UBERON:0004921,6.04e-09,118;UBERON:0009856,1.92e-08,26;UBERON:0000489,2.14e-08,31;UBERON:0009569,2.67e-08,112;UBERON:0008835,3.02e-08,22;UBERON:0003894,3.02e-08,22;UBERON:0001007,7.45e-08,145;UBERON:0001555,7.45e-08,145;UBERON:0007026,7.45e-08,145;UBERON:0003929,2.27e-07,54;UBERON:0007499,4.26e-07,25;UBERON:0003104,4.86e-07,160;UBERON:0009142,4.86e-07,160 | |||
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| ||
|short_description=p10@RBM47 | |||
}} | }} |
Latest revision as of 18:42, 17 September 2015
Short description: | p10@RBM47 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_RBM47_5end |
Coexpression cluster: | C4410_small_Mesothelial_signet_kidney_colon_mesothelioma_bile |
Association with transcript: | 16bp_to_ENST00000381795, NM_019027, uc003gvd.2_5end |
EntrezGene: | RBM47 |
HGNC: | 30358 |
UniProt: | A0AV96 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 1.70e-15 | 19 |
steroid hormone secreting cell | 4.29e-10 | 3 |
brush border epithelial cell | 7.12e-10 | 3 |
kidney cortex tubule cell | 7.12e-10 | 3 |
epithelial cell of proximal tubule | 7.12e-10 | 3 |
epithelial cell | 1.23e-08 | 253 |
kidney cell | 2.48e-08 | 17 |
kidney epithelial cell | 2.48e-08 | 17 |
cortical cell of adrenal gland | 2.99e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 4.70e-09 | 25 |
signet ring cell adenocarcinoma | 5.35e-08 | 2 |
gastrointestinal system cancer | 9.76e-08 | 14 |
tubular adenocarcinoma | 1.72e-07 | 2 |