FFCP PHASE1:Hg19::chr12:53344624..53344654,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:53344624..53344654,- to FFCP PHASE1:Hg19::chr12:53344624..53344654,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:53344624..53344654,- | |||
|coexpression_cluster_id=C819 | |||
|description=CAGE_peak_at_chr12:53344624..53344654,- | |||
|id=chr12:53344624..53344654,- | |||
|ontology_enrichment_celltype=CL:0000066!1.93e-54!254;CL:0000223!2.21e-12!59;CL:0000077!2.75e-12!19;CL:0000076!4.88e-11!62;CL:0002321!1.25e-10!248;CL:0000220!2.94e-10!246;CL:0002076!8.06e-10!43;CL:0000063!2.62e-07!578;CL:0000213!4.45e-07!57;CL:0000215!4.45e-07!57;CL:0000548!5.37e-07!679;CL:0000004!5.37e-07!679;CL:0000255!5.37e-07!679 | |||
|ontology_enrichment_celltype_v019=CL:0000077;1.53e-17;19!CL:0002681;2.08e-09;12!CL:0002584;2.08e-09;12!CL:1000449;9.30e-09;15!CL:1000497;1.81e-07;17!CL:0002518;1.81e-07;17!CL:1000507;6.31e-07;10!CL:1000494;6.31e-07;10!CL:0002577;9.52e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.43e-32,253;CL:0000077,1.88e-17,19;CL:0002681,3.23e-09,12;CL:0002584,3.23e-09,12;CL:1000449,1.21e-08,15;CL:0000076,1.32e-08,63;CL:0002321,5.90e-08,250;CL:0000223,1.11e-07,58;CL:1000497,2.28e-07,17;CL:0002518,2.28e-07,17;CL:0000213,4.39e-07,58;CL:0000215,4.39e-07,58;CL:1000507,5.41e-07,10;CL:1000494,5.41e-07,10;CL:0002577,9.73e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.55e-29!106;DOID:0050687!2.30e-24!143;DOID:162!9.83e-16!235;DOID:14566!1.35e-14!239;DOID:299!2.74e-10!25 | |||
|ontology_enrichment_disease_v019=DOID:299;1.37e-13;25!DOID:305;1.41e-07;106!DOID:170;3.49e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.15e-19,106;DOID:0050687,1.75e-15,143;DOID:299,1.45e-13,25;DOID:162,6.16e-11,235;DOID:14566,2.22e-10,239;DOID:170,2.97e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.07e-16!169;UBERON:0000925!1.07e-16!169;UBERON:0006595!1.07e-16!169;UBERON:0000466!2.67e-14!126;UBERON:0001048!2.04e-13!168;UBERON:0005911!2.13e-13!82;UBERON:0004921!2.74e-13!129;UBERON:0004185!2.74e-13!129;UBERON:0001007!5.70e-13!155;UBERON:0001555!5.70e-13!155;UBERON:0007026!5.70e-13!155;UBERON:0000077!1.14e-12!130;UBERON:0005177!2.12e-12!107;UBERON:0000464!9.45e-11!104;UBERON:0005172!1.23e-10!55;UBERON:0005173!1.23e-10!55;UBERON:0001041!1.28e-10!98;UBERON:0009569!1.36e-10!113;UBERON:0006554!2.42e-10!44;UBERON:0003104!4.37e-10!238;UBERON:0009142!4.37e-10!238;UBERON:0002417!6.71e-10!61;UBERON:0000916!6.71e-10!61;UBERON:0001008!7.46e-10!45;UBERON:0000058!1.35e-09!26;UBERON:0003929!6.78e-09!54;UBERON:0003914!1.51e-08!118;UBERON:0002113!2.50e-08!27;UBERON:0003918!2.50e-08!27;UBERON:0005095!2.50e-08!27;UBERON:0007687!2.50e-08!27;UBERON:0002553!2.94e-08!70;UBERON:0003886!2.96e-08!63;UBERON:0008947!6.06e-08!38;UBERON:0003258!6.06e-08!38;UBERON:0002100!1.24e-07!216;UBERON:0003064!1.32e-07!37;UBERON:0000065!3.80e-07!53;UBERON:0000072!6.12e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0001851;3.49e-11;15!UBERON:0001225;2.08e-09;12!UBERON:0008987;2.08e-09;12!UBERON:0006555;9.30e-09;15!UBERON:0004819;9.30e-09;15!UBERON:0001285;9.30e-09;15!UBERON:0007684;9.30e-09;15!UBERON:0002113;3.15e-08;24!UBERON:0011143;3.15e-08;24!UBERON:0005172;2.00e-07;52!UBERON:0005173;2.00e-07;52!UBERON:0006554;3.55e-07;30!UBERON:0001008;3.55e-07;30!UBERON:0000353;3.82e-07;15!UBERON:0004211;6.31e-07;10!UBERON:0009773;6.31e-07;10!UBERON:0001231;6.31e-07;10!UBERON:0004810;6.31e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005177,2.57e-13,101;UBERON:0001851,5.36e-11,15;UBERON:0009569,9.76e-10,112;UBERON:0005172,2.35e-09,54;UBERON:0005173,2.35e-09,54;UBERON:0001225,3.23e-09,12;UBERON:0008987,3.23e-09,12;UBERON:0002100,5.04e-09,199;UBERON:0004211,1.21e-08,15;UBERON:0009773,1.21e-08,15;UBERON:0001231,1.21e-08,15;UBERON:0001285,1.21e-08,15;UBERON:0007684,1.21e-08,15;UBERON:0004208,1.21e-08,15;UBERON:0004921,4.84e-08,118;UBERON:0006555,5.77e-08,16;UBERON:0004819,5.77e-08,16;UBERON:0002417,7.76e-08,60;UBERON:0000916,7.76e-08,60;UBERON:0004119,8.70e-08,160;UBERON:0000925,8.70e-08,160;UBERON:0006595,8.70e-08,160;UBERON:0006554,9.29e-08,47;UBERON:0001041,1.37e-07,87;UBERON:0001008,1.70e-07,48;UBERON:0002113,2.24e-07,26;UBERON:0003918,2.24e-07,26;UBERON:0011143,2.24e-07,26;UBERON:0005095,2.24e-07,26;UBERON:0007687,2.24e-07,26;UBERON:0005631,3.01e-07,14;UBERON:0000158,3.01e-07,14;UBERON:0005911,5.01e-07,82;UBERON:0000353,5.34e-07,15;UBERON:0004810,5.41e-07,10;UBERON:0001007,5.94e-07,145;UBERON:0001555,5.94e-07,145;UBERON:0007026,5.94e-07,145;UBERON:0003124,6.75e-07,7 | |||
|phase1_expression=0,0,0.140954404095971,0,0,4.36169262050184,0,0,0,4.42321085702716,7.6758128476967,3.9319446983431,3.9565046734268,0,0,0,0,0.730310090387373,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.35350429851818,2.55725123687061,0,0,0,0,0,0.661743720148475,1.33037638477538,2.0202000709419,0,0,0,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0.347140501607594,1.13061588384802,0.838998872419812,0.275118041940067,0.208994966536811,0,0,0,1.20848795132744,0,0,0,0.81014194788176,0.0892997282840798,0,0.563057402416611,0,1.89853131913626,0.366403487860815,0,0,0.436094052142534,1.98788780678127,0.379891534993739,0.132409180813219,0.286836620748814,0.354668382198357,4.48542080113846,0,0.98667019366864,0,0.538842688278752,0.653847612453835,0,0.576175924479999,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26864366320042,0,0,0,0,0,0.515281080091258,0,0,0,0,0,0.161646056818812,0,0,0.508681776931463,0.773043412653187,0.272746120590835,0.286804595389004,0.609868530647977,0.265059536642971,0.580969714347592,0.725627385107593,1.26160425437814,0.72995471815166,0,0,0,0,0,1.41968160047813,0.505754070234305,0.964044119533928,2.42646740011267,0.653638332277218,0.474541238222193,1.48314438976181,1.37355025587742,0.769494313892781,0,0,2.8810180793198,4.41026134156626,0,0.982827216677626,1.77236972004421,0,1.47586126251736,0.171567810298526,0.109750285408626,2.24803506515239,0.201057944823262,0.185176890317059,0,0,1.44331342025273,0.115930404975077,0.352226082707465,0.144366447761074,0.462985512576611,0,15.8040879591855,15.4527509177077,0,0,0,0.93733833986777,0.16798212819886,0,0.268675568108545,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0,0.646358578788889,0,0.845302752556,0.26593811658487,0,0,0,0,0.857867961948885,0,0.823240336780769,0,1.42156779497018,0,0.904318131178758,2.61460037580088,2.99918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500170521059677,0,1.45579603071565,0,0.157702415033935,0,0,0,0,0,0.921845842708516,0,0,0,0,0,0,5.45629628603267,6.65741758041988,4.23346410661552,0,0.153461973288062,0,0.640695746278505,0,0.160853921143607,0,0,0.177561725313127,0.164254312027618,0,0.232420756919918,1.69203229428271,0.601519410909855,0.460404944679482,0.574072240823034,0.364182336013434,0,0.902399225814824,2.38747545023686,1.56869953835371,0,0.73886140225013,1.13733384070897,0.170093705276516,1.0795795805107,0,1.08378575017541,2.00675909541941,1.78413391131527,4.15538004464362,1.79099803777743,0,0,0.769350375349168,0.984043937099117,0.325378394664303,0.309123034943167,0.183138929636687,0.082509499920588,0,0,3.21367859688319,0,0,0,0.137836572484531,0,0,0,0,0.495854746082934,0.576570202095319,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0.316379424718726,3.43134349062885,0,0,0,0,0.179872457583315,0.274537029736055,1.29593642580255,0.606547444719948,0,0.421258456238981,0,0,0,0,0.141405431953713,0,0,0,0,0,0,1.21746226177622,1.54911749049875,2.81695602532241,0.860468113224309,0.196498082026242,0,0,0,0,0,0,0.384888450902048,1.34060455107157,3.26672954583968,0.376575203107117,0.43050537267123,3.36942951335251,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,1.6023610669121,1.92495971052672,1.71528151186722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11362469558097,0,0,0,0,1.12284324244932,0,0,0,3.12549761487054,0.71623345421307,1.18785872333055,0,0,0,0.111308705022906,0,0.422250816255987,0,0,0.251932747854276,0,0,0,2.06697207638852,1.07412704805365,0,0,0,0,0,0,0,4.6876996995342,0.0874599999961957,0,1.93448862085349,2.79679015322043,5.2005289988946,0,0,0,0,0,0,0,0,0,0.10893846351899,0.278847488557207,0.0769502585037971,0,0.69169171316418,0.987334088507493,5.3237212241784,4.46601623624687,0.274792780205587,3.19820865611181,0,0,0,0,0,0,0.189753732724185,0,3.16497096792041,2.12202650606892,3.1097675715467,0,0.995261931078505,0,0.611030144933625,0,0,0,0,0,0,0,0.586993856796269,2.67058417487502,0.394584402849391,1.20990716048664,0,0,0.150323419414493,0.414752765588989,0,0,0.313932918407225,1.19472429772959,0.569219092059585,0,11.1078232534484,0.293977192243133,0.522355239482415,0.34945333648406,0,0.967563312890852,0.219267951258557,0.985385484638511,0,0.353024506766001,0.225980740780532,0.411125773940253,0.596143835108969,0,1.95551382734803,0.400794101257669,1.06726497369676,4.39581141080687,1.00863292007874,0,0.171594997861965,0.576219191952599,0.49701014226173,0.707082103850386,0.543616824294456,0.836822770498666,0.101998217636322,0.288950589901519,0,0,0,3.0083580899397,0,0,0,0,1.59743200399193,0,0,0,0,1.16495949527454,0.945398187686684,0.906574442192831,0.808842526250219,1.37798474120648,0,0,0,1.60753148465019,1.10031549277787,0.83088067605837,0,0,0,0,0.315222829196793,0.104909176269996,0.211200673038813,0.896436696664224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| ||
|short_description=p@chr12:53344624..53344654,- | |||
}} | }} |
Latest revision as of 09:43, 24 July 2015
Short description: | p@chr12:53344624..53344654, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:53344624..53344654, - |
Coexpression cluster: | C819_Alveolar_MCF7_mesothelioma_endometrioid_signet_Renal_gastric |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.43e-32 | 253 |
mesothelial cell | 1.88e-17 | 19 |
kidney cortical cell | 3.23e-09 | 12 |
renal cortical epithelial cell | 3.23e-09 | 12 |
epithelial cell of nephron | 1.21e-08 | 15 |
squamous epithelial cell | 1.32e-08 | 63 |
embryonic cell | 5.90e-08 | 250 |
endodermal cell | 1.11e-07 | 58 |
kidney cell | 2.28e-07 | 17 |
kidney epithelial cell | 2.28e-07 | 17 |
lining cell | 4.39e-07 | 58 |
barrier cell | 4.39e-07 | 58 |
kidney tubule cell | 5.41e-07 | 10 |
nephron tubule epithelial cell | 5.41e-07 | 10 |
placental epithelial cell | 9.73e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.15e-19 | 106 |
cell type cancer | 1.75e-15 | 143 |
adenocarcinoma | 1.45e-13 | 25 |
cancer | 6.16e-11 | 235 |
disease of cellular proliferation | 2.22e-10 | 239 |
endocrine gland cancer | 2.97e-07 | 6 |