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|DRA_sample_Accession=CAGE@SAMD00005785
|DRA_sample_Accession=CAGE@SAMD00005785
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005785
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005785
|accession_numbers=CAGE;DRX008648;DRR009520;DRZ000945;DRZ002330
|accession_numbers=CAGE;DRX008648;DRR009520;DRZ000945;DRZ002330;DRZ012295;DRZ013680
|accession_numbers_RNASeq=RNA-Seq;DRX057116;DRR062875;DRZ007951
|accession_numbers_RNASeq=RNA-Seq;DRX057116;DRR062875;DRZ007951
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001301,UBERON:0000479,UBERON:0000058,UBERON:0005156,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0005904,UBERON:0004175,UBERON:0010317,UBERON:0003101,UBERON:0000079,UBERON:0006947,UBERON:0004054
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001301,UBERON:0000479,UBERON:0000058,UBERON:0005156,UBERON:0000062,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0005904,UBERON:0004175,UBERON:0010317,UBERON:0003101,UBERON:0000079,UBERON:0006947,UBERON:0004054
Line 56: Line 56:
|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;10197
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10197
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;10197
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10197
|name=epididymis, adult
|name=epididymis, adult
|namespace=FANTOM5
|namespace=FANTOM5
Line 65: Line 65:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 104: Line 104:
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|top_motifs=AR:5.40744986391;XBP1:3.44722197096;TFAP2{A,C}:2.75236309476;GCM1,2:2.63607290971;HNF1A:2.55648198595;NR3C1:2.43308645624;ESR1:2.42014047088;SRF:2.33639971165;MYBL2:2.3228639958;NR1H4:2.24687273338;TFCP2:2.24171626307;PAX6:2.13230415696;MEF2{A,B,C,D}:2.09795635925;RFX2..5_RFXANK_RFXAP:1.88067404002;TLX1..3_NFIC{dimer}:1.8045148985;RFX1:1.80263753993;SMAD1..7,9:1.79293191753;SP1:1.63614546023;ATF6:1.5660004287;SNAI1..3:1.55983435774;PAX5:1.52753666716;MTF1:1.52662055889;MYFfamily:1.51716966762;ZIC1..3:1.5049063325;SOX5:1.4977472425;SPZ1:1.48168358063;HMX1:1.47130632934;FOX{D1,D2}:1.42258743834;MAZ:1.42124777438;PATZ1:1.38411144;TLX2:1.30940861867;GFI1B:1.29990910318;HIC1:1.2860848525;NKX3-2:1.27524908829;GATA4:1.26233843575;LEF1_TCF7_TCF7L1,2:1.23930844727;GTF2I:1.21378620294;MYOD1:1.2128847768;KLF4:1.16343133606;MZF1:1.16114319765;LMO2:1.12899906449;TFAP4:1.09833606166;ZNF423:1.09695929585;RXRA_VDR{dimer}:1.06326389448;ZEB1:1.05349344964;HBP1_HMGB_SSRP1_UBTF:1.05182272824;TBP:1.04972117208;ESRRA:1.04532516538;TFAP2B:1.02212029958;NR6A1:1.01099493534;IRF7:0.930685919914;RBPJ:0.911117768542;EP300:0.878743474897;EBF1:0.876598649259;SREBF1,2:0.863737101476;XCPE1{core}:0.86182887571;EVI1:0.848651947439;PRDM1:0.839753579838;TEAD1:0.83799432815;PDX1:0.825875959876;TEF:0.772325729248;RREB1:0.761208693257;EGR1..3:0.749382797344;FOXN1:0.71299610289;PAX1,9:0.687281241375;TGIF1:0.682324152502;FOXL1:0.676339114904;UFEwm:0.67496112821;MED-1{core}:0.674181516955;HNF4A_NR2F1,2:0.669318988309;MTE{core}:0.65635257381;BPTF:0.631071770308;NKX6-1,2:0.630902927948;NFATC1..3:0.625720171724;NHLH1,2:0.601494287367;IKZF2:0.560333905188;ZBTB6:0.550566162467;GTF2A1,2:0.539677695706;ATF2:0.52889205116;TBX4,5:0.508215370576;FOXO1,3,4:0.503737027755;HOX{A4,D4}:0.491113385759;RXR{A,B,G}:0.473396927908;IKZF1:0.473157664204;GZF1:0.447607147189;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.435458064348;STAT2,4,6:0.429157497232;HAND1,2:0.410328564353;JUN:0.410066507993;TAL1_TCF{3,4,12}:0.36197584047;NFIX:0.347768006641;GLI1..3:0.316519356762;ZNF238:0.310526636609;FOXP1:0.306694386778;GFI1:0.285373489902;POU3F1..4:0.279030855749;STAT1,3:0.276278323492;NR5A1,2:0.252260008334;ZFP161:0.247856679956;TP53:0.235228704491;IRF1,2:0.230992235653;FOXD3:0.224907260476;EN1,2:0.218858070169;CDX1,2,4:0.214088655546;ZNF384:0.190134679913;NFE2L1:0.178992455661;FOXP3:0.155913578581;HLF:0.112365991742;FOXM1:0.0979789050539;TOPORS:0.0847341028595;ALX4:0.0695338919819;ETS1,2:0.0578695176095;FOXQ1:0.0539421037449;ZNF148:0.045726773944;POU6F1:0.0374671851951;ATF4:0.0246080654663;REST:0.00169892466976;LHX3,4:-0.00614015508316;NKX2-3_NKX2-5:-0.0277169945319;HMGA1,2:-0.0442373303918;CUX2:-0.0445956760841;HES1:-0.0586001381939;HSF1,2:-0.0879930127925;BREu{core}:-0.0949873086822;AIRE:-0.0980715306785;DBP:-0.108590064924;GATA6:-0.139867960062;NANOG{mouse}:-0.172592119459;POU5F1:-0.185956922786;SPI1:-0.192420647826;SPIB:-0.197004172888;HOX{A6,A7,B6,B7}:-0.205054471591;SOX2:-0.231595278893;PPARG:-0.245329497233;SOX17:-0.248079489842;T:-0.262495409701;CDC5L:-0.271062302129;CREB1:-0.287404447138;ZNF143:-0.312322993032;SOX{8,9,10}:-0.31756467132;NFY{A,B,C}:-0.341804932257;PITX1..3:-0.350408093092;MAFB:-0.386176146721;POU2F1..3:-0.403656651818;NRF1:-0.409531371411;NKX2-1,4:-0.463803731128;NKX2-2,8:-0.480712760378;ELF1,2,4:-0.495929596504;HIF1A:-0.541716510436;PBX1:-0.558518859839;PAX4:-0.567452744183;DMAP1_NCOR{1,2}_SMARC:-0.598715700081;PAX3,7:-0.637720472774;ELK1,4_GABP{A,B1}:-0.677918562504;YY1:-0.685493024197;NFE2:-0.693257401403;ATF5_CREB3:-0.702602047782;FOSL2:-0.717218225393;ZBTB16:-0.753213695246;HOX{A5,B5}:-0.769840332405;NFIL3:-0.770434213512;NFKB1_REL_RELA:-0.77704091575;RUNX1..3:-0.843871474623;ARID5B:-0.854754831127;RORA:-0.865410676027;BACH2:-0.87886229974;CEBPA,B_DDIT3:-0.882200012345;PAX2:-0.922441817724;HOXA9_MEIS1:-0.929337652582;AHR_ARNT_ARNT2:-0.92979028865;ALX1:-0.987038377249;E2F1..5:-0.998678188615;ADNP_IRX_SIX_ZHX:-1.01272606249;PRRX1,2:-1.04095313581;FOS_FOS{B,L1}_JUN{B,D}:-1.1054107611;FOX{I1,J2}:-1.12451923198;FOXA2:-1.12470342909;FOX{F1,F2,J1}:-1.14114263142;MYB:-1.14600554619;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.17263892807;NFE2L2:-1.20763384484;ONECUT1,2:-1.27139604198;bHLH_family:-1.29099363861;TFDP1:-1.31844676722;NKX3-1:-1.35112397248;POU1F1:-1.35398265134;NANOG:-1.41672786703;STAT5{A,B}:-1.67631502026;OCT4_SOX2{dimer}:-1.7914576476;VSX1,2:-1.84761609383;CRX:-2.13951032449;PAX8:-2.55776629638
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10197-103E8;search_select_hide=table117:FF:10197-103E8
}}
}}

Latest revision as of 18:15, 3 June 2020

Name:epididymis, adult
Species:Human (Homo sapiens)
Library ID:CNhs12847
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexM
age24
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationNA
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberR1234105-10
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005785
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12847 CAGE DRX008648 DRR009520
Accession ID Hg19

Library idBAMCTSS
CNhs12847 DRZ000945 DRZ002330
Accession ID Hg38

Library idBAMCTSS
CNhs12847 DRZ012295 DRZ013680
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005785
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10059 RNA-Seq DRX057116 DRR062875
Accession ID Hg19

Library idBAMCTSS
RDhi10059 DRZ007951


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0621
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.0191
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.254
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.743
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0699
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0429
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0.0699
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.238
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0699
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.13
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0699
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.347
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0713
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.165
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0306
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.38
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.332
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0.0699
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.699
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.0699
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.0699
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.0649
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.52
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.13
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.23
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.0699
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70.0699
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.346
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0699
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.273
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.24
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.569
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0699
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0699
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0699
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0444
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0699
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0699
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0699
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.436
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.0699
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.171
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.23
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.0699
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.23
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.311
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.347
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0699
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0699
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.617
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0.13
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1331.104
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0.363
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.131
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.27
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.183
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0699
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0.0699
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.0699
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0.0699
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0.13
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12847

Jaspar motifP-value
MA0002.20.00273
MA0003.10.0219
MA0004.10.0122
MA0006.10.161
MA0007.10.0218
MA0009.10.141
MA0014.10.817
MA0017.10.464
MA0018.20.44
MA0019.10.00673
MA0024.10.0176
MA0025.10.212
MA0027.10.793
MA0028.16.23706e-4
MA0029.10.509
MA0030.10.193
MA0031.10.537
MA0035.20.11
MA0038.10.613
MA0039.20.782
MA0040.10.449
MA0041.10.383
MA0042.10.82
MA0043.10.0553
MA0046.13.5808e-15
MA0047.20.705
MA0048.10.0717
MA0050.10.927
MA0051.10.737
MA0052.17.04171e-5
MA0055.10.00229
MA0057.10.735
MA0058.10.0122
MA0059.10.00114
MA0060.10.0208
MA0061.11.34052e-8
MA0062.25.55334e-6
MA0065.20.662
MA0066.10.486
MA0067.10.00956
MA0068.10.0027
MA0069.10.84
MA0070.10.788
MA0071.10.271
MA0072.10.0763
MA0073.10.618
MA0074.10.25
MA0076.14.05956e-4
MA0077.10.796
MA0078.10.0903
MA0079.20.176
MA0080.27.3745e-4
MA0081.10.0051
MA0083.10.00175
MA0084.10.85
MA0087.10.141
MA0088.10.0126
MA0090.10.317
MA0091.10.673
MA0092.10.902
MA0093.10.0218
MA0099.29.60049e-24
MA0100.10.101
MA0101.11.12122e-8
MA0102.20.1
MA0103.10.0961
MA0104.24.37043e-5
MA0105.11.41062e-9
MA0106.10.0985
MA0107.13.32659e-9
MA0108.23.66623e-10
MA0111.10.449
MA0112.20.435
MA0113.10.0054
MA0114.10.711
MA0115.10.676
MA0116.15.90565e-4
MA0117.10.0988
MA0119.10.862
MA0122.10.244
MA0124.10.84
MA0125.10.536
MA0131.10.31
MA0135.10.48
MA0136.15.23923e-5
MA0137.20.303
MA0138.20.929
MA0139.10.388
MA0140.10.00982
MA0141.10.358
MA0142.10.107
MA0143.10.667
MA0144.10.429
MA0145.10.0135
MA0146.10.911
MA0147.12.20186e-5
MA0148.10.632
MA0149.10.0219
MA0150.17.40549e-6
MA0152.10.423
MA0153.11.4319e-14
MA0154.10.0459
MA0155.10.166
MA0156.12.88484e-6
MA0157.10.588
MA0159.10.701
MA0160.10.6
MA0162.10.885
MA0163.10.00137
MA0164.10.357
MA0258.10.346
MA0259.10.0132



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12847

Novel motifP-value
10.0578
100.0491
1000.222
1010.849
1020.376
1030.249
1040.258
1050.439
1060.911
1070.192
1080.847
1090.0476
110.138
1100.204
1110.0475
1120.382
1130.844
1140.0739
1150.435
1160.525
1170.0355
1180.159
1190.754
120.706
1200.274
1210.907
1221
1230.0224
1240.428
1250.14
1260.367
1270.21
1280.45
1290.914
130.159
1300.436
1310.943
1320.114
1330.211
1340.485
1350.13
1360.69
1370.568
1380.814
1390.539
140.861
1400.988
1410.801
1420.873
1430.00126
1440.484
1450.282
1460.787
1470.475
1480.311
1490.222
150.0898
1500.369
1510.793
1520.202
1530.495
1540.247
1550.914
1560.978
1570.856
1580.313
1590.292
160.82
1600.301
1610.914
1620.787
1630.193
1640.365
1650.174
1660.188
1670.0251
1680.455
1690.24
170.464
180.0245
190.284
20.0131
200.0367
210.41
220.72
230.724
240.558
250.402
260.063
270.677
280.603
290.0185
30.217
300.0356
310.957
320.376
330.106
340.29
350.384
360.00716
370.279
380.539
390.295
40.255
400.0858
410.0376
420.122
430.164
440.459
450.178
460.183
470.252
480.378
490.0674
50.205
500.659
510.473
520.142
530.805
540.789
550.912
560.834
570.208
580.653
590.815
60.772
600.607
610.823
620.404
630.754
640.347
650.609
660.0103
670.511
680.902
690.997
70.377
700.133
710.0662
720.86
730.334
740.616
750.0109
760.0257
770.117
780.0473
790.845
80.369
800.753
810.954
820.55
830.769
840.98
850.734
860.834
870.504
880.902
890.567
90.579
900.0291
910.619
920.636
930.216
940.0757
950.0315
960.751
970.846
980.594
990.24



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12847


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001301 (epididymis)
0000479 (tissue)
0000058 (duct)
0005156 (reproductive structure)
0000062 (organ)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0005904 (duct of male reproductive system)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)
0006947 (male genital duct)
0004054 (internal male genitalia)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011289 (epididymis- adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0007297 (presumptive pronephric mesoderm)
UBERON:0010316 (germ layer / neural crest)

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