Personal tools

FF:10855-111F9: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(4 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005214
|DRA_sample_Accession=CAGE@SAMD00005214
|accession_numbers=CAGE;DRX007944;DRR008816;DRZ000241;DRZ001626
|accession_numbers=CAGE;DRX007944;DRR008816;DRZ000241;DRZ001626;DRZ011591;DRZ012976
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
Line 41: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg38.nobarcode.ctss.bed.gz
|id=FF:10855-111F9
|id=FF:10855-111F9
|is_a=EFO:0002091;;FF:0000210;;FF:0102424
|is_a=EFO:0002091;;FF:0000210;;FF:0102424
Line 46: Line 51:
|library_id=CNhs13072
|library_id=CNhs13072
|library_id_phase_based=2:CNhs13072
|library_id_phase_based=2:CNhs13072
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10855
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10855
|name=mesothelioma cell line:Mero-84
|name=mesothelioma cell line:Mero-84
|namespace=FANTOM5
|namespace=FANTOM5
Line 53: Line 62:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0.116873766533297,0.0584368832666485,0,0,0,0,0.188999483403139,0,0.334150292342418,0.321430731854119,0,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,-0.0364492438151307,0,0,0,0,0,0.186789552067952,0,0,-0.0160828232455653,0,0,0,0,0,0,0,0,0,0,0,0,0.113120349632835,0.0268973301462423,0,0,0,0,0,0,0,0.222594660713167,0,0,0,0,0,0,0,0.0198814052906918,0,0,0.0195301393202,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.147240254377244,0.142373724168005,0,0,0.0584269397214717,0.0775032836351085,0,0,0,0.28474744833601,-0.0980353512377064,0.089159123037068,0,0,0,0.116873766533297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0782851628223015,0,0,0,0.250825417146498,0.404847272001432,0,0,0.00990734107241878,0,0,0
|repeat_enrich_byfamily=0,0.116873766533297,0.0584368832666485,0,0,0,0,0.188999483403139,0,0.334150292342418,0.321430731854119,0,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,-0.0364492438151307,0,0,0,0,0,0.186789552067952,0,0,-0.0160828232455653,0,0,0,0,0,0,0,0,0,0,0,0,0.113120349632835,0.0268973301462423,0,0,0,0,0,0,0,0.222594660713167,0,0,0,0,0,0,0,0.0198814052906918,0,0,0.0195301393202,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.147240254377244,0.142373724168005,0,0,0.0584269397214717,0.0775032836351085,0,0,0,0.28474744833601,-0.0980353512377064,0.089159123037068,0,0,0,0.116873766533297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0782851628223015,0,0,0,0.250825417146498,0.404847272001432,0,0,0.00990734107241878,0,0,0
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0.28474744833601,0.116873766533297,0,0,0,0.28474744833601,0,0,0,0,-0.247178875285564,0.0584368832666485,0.299760405812003,-0.143515142523472,0,0,-0.322843129251573,0,0,0,0,0,0,0,0.116873766533297,0,-0.128119866952565,0,1.43154773225158,0,0,0,0,-0.0186252810838506,-0.0966003155824133,0,-0.069822103491513,0.472036722400902,0,0,0,0,-0.009044614956521,0,-0.120879483793741,-0.0827201683234173,-0.136497324683588,-0.129162392754998,-0.055712496781182,0,0,0,-0.492355611757634,0.213540928569696,0,0,0.382526974692386,-0.181349618560659,0,0,-0.391044581551635,0,-0.692500168301733,0.0392080153525806,0,0.0365238547794449,0,0,0,0,0,0,0,0,0,0,0,0.628925140225173,-0.042241148342959,0,0.208871915315994,0.773846624564011,0,0.149940818706253,0,0,-0.373286155956567,0.0151154718511491,-0.0818417114745265,0.516035565012974,0,-0.185515960476616,-0.0987259020443396,0.277819451361891,0.119978511522862,-0.0305280828378416,-0.189981719549847,0.0325651000338363,-0.147240254377244,-0.143134345694811,-0.0656989016062434,-0.20048914488329,0.0968196818063814,0.0660650390574975,-0.115831484971279,0,0,0,-0.480396338901419,0,0.0264830146964705,0.546579891261435,0.0170600469278935,0.127861148426105,-0.188821459314451,0.0799128377732135,0.0466228698903217,0.0773412380766264,-0.248564537580601,0,-0.246913568158937,0.0462931528176315,0.116873766533297,0,0.00477140109423102,0.00994182411023548,-0.115917858744347,0,-0.367103695277684,0.216403187258642,0,0.10564369703809,-0.255159024888152,0,0,-0.0383962473931417,0,0,0,0,0,0.226088296085917,0.0720202815057661,0.0518918867804651,0,0.085738063800506,0,0.18052984103744,0,-0.0700980488341147,0.237385513265253,-0.181200385827995,-0.0893291536608447,0,0.142064448010151,0.0540024510837054,0.146120650549988,0.155006567270217,0.0584269397214717,-0.118959509239799,-0.359063138260801,-0.256484544322751,0.0852420986922587,0.330964951082513,0.96072063155129,-0.0417723708066839,-0.428272102842454,0.116355799596033,0.0432629802903326,-0.120170461153832,0,-0.0534007292866787,0,-0.11388887813695,0,0.156728475071338,0.185740684985757,-0.230417459264692,-0.326970038674208,0,0.290888341319501,0.792294182430779,0.013641465620396,0.200679059948764,-0.0417719209484523,0.455272647675926,-0.0334933168013424,-0.157314983034312,0.180677453520582,-0.138989456679195,0,-0.581208243073663,0,0,0.186905336017896,-0.235476037764389,0,0.0240572443636577,0.246681267474694,-0.198697698972985,-0.115971073434934,0.349317513489525,0,-0.0682989653307701,0,0,0.648960152173632,-0.0476229483497312,0.391535156390006,-0.0444544261707617,-0.0525627030684395,0.301569360471708,0,0,0.322380548469157,0,0.05743017452277,0,0,-0.047122125487669,0.000245653543164151,0,0,0.116873766533297,0,0,0,0,0,0,0,0,-0.0511402291891796,-0.237959563683151,0,0.00246156623968297,0,0,0,0,0,0,0.116873766533297,0,0.685685399859056,0.111675547071659,-0.00614364914312333,0,0,0,0,-0.0988496360201777,0.00563535322127021,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0.0584368832666485,0.15114145826233,0.314678244047352,0,0,0,0.178318246074136,0,0,0,0,-0.182265728316213,0,0,0.37938830696226,0,-0.186585582582165,0.0352918869864555,0,-0.131100505519611,0.000570474941865129,0.481606193905564,0,0,-0.144473365256591,0,0.0997369662376595,-0.065707238447054,0,0,0,0,0,0,0,0,0,-0.0974407458664587,0.116873766533297,0,0,0,0,0,0,0,0,0,0,-0.317541346447618,0.0246497098747865,0,0,0,0,0,0,0,-0.0241060230789031,0.035261722451861,0.0584368832666485,0,0.0164098786445557,0,0,0.116873766533297,0,0,0.0689550438150281,0,0,0,0,0,0.0198814052906918,0,0,0,0.116873766533297,0.642861463708238,0,0,0.334150292342418,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,-0.0064453195021508,0.548033929475787,0,0,0,0,0,0,0,0.00991415012991942,0,0,0,0,-0.113884373708977,0,0,0,0.35047626288677,0,0.188999483403139,0,0,0,0.0584368832666485,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174658756744763,0,0,0,0.174921930585087,0,-0.0783356006569158,0.116873766533297,0,0,-0.057969595888279,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00293104421826635,0,0,0,0,0,0,0,0.186789552067952,0,0,-0.0335959265338777,0,0,0,0,0,0,-0.087166233222056,0.62533614549652,-0.0860191965171747,0,0,0,0.00405131078419347,0,0,0.0331005885854472,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0364492438151307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.024425519991232,0,0,0.116873766533297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128853447047356,0,0,0,-0.00421431434104971,0,0,0,0,0,0,0,0,0.208871915315994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,0.17197250571156,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.124495283085967,0,0,0.405518342222309,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0268973301462423,0,0,0,0,0.161234804655075,0,0,0,0,0,0,0,0.0170074598561438,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41900600162746,0,0,0.0519815692830131,0,0,0,0,0,0,0,0,0,0,0,0,0.287997334339399,0,0,0,0,0,0,0,0,0,0,0.236317406110341,0,0,0,0,0,0,0,0,0,0,0.208871915315994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253238175244795,0.404847272001432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208871915315994,0,0,0,0,0,0,0,0,0,0,0,0,-0.151964904996243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0287399608939727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208871915315994,0,0,0.104435957657997,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,0,0,0.116873766533297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,0.116873766533297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,0,0,0,-0.503522652216307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156570325644603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,-0.0148626901185022,0,0,0,0,0,0,0,-0.00582223046370396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0346970997490866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0267202972182653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129129916651016,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,0,0,0,0,0.0195301393202,0,0.104435957657997,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0160828232455653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238762703809391,0,0,0,0,0,0,0.0584368832666485,0,0,0,-0.0412500915278073,0.202759171111154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109759631160827,0,0,-0.0422874684771159,0,0.285375851093724,0.0742520071466481,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104435957657997,0,0,0,0,0,-0.0329025447658974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00467535301304406,0,0.0099565718678614,0.00844365370029454,0,0,-0.0705288764554781,0.00990734107241878,0.116873766533297,0.0798418778949559,0,0,0.0338790202256949,-0.226916645085839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405518342222309,0.116873766533297,0.116873766533297,-0.0568589461625992,0.270905347883701,0.208871915315994,0.076436393325502,0,0,0.0136832807433653,0,0,0.116873766533297,0.112912507942407
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0.28474744833601,0.116873766533297,0,0,0,0.28474744833601,0,0,0,0,-0.247178875285564,0.0584368832666485,0.299760405812003,-0.143515142523472,0,0,-0.322843129251573,0,0,0,0,0,0,0,0.116873766533297,0,-0.128119866952565,0,1.43154773225158,0,0,0,0,-0.0186252810838506,-0.0966003155824133,0,-0.069822103491513,0.472036722400902,0,0,0,0,-0.009044614956521,0,-0.120879483793741,-0.0827201683234173,-0.136497324683588,-0.129162392754998,-0.055712496781182,0,0,0,-0.492355611757634,0.213540928569696,0,0,0.382526974692386,-0.181349618560659,0,0,-0.391044581551635,0,-0.692500168301733,0.0392080153525806,0,0.0365238547794449,0,0,0,0,0,0,0,0,0,0,0,0.628925140225173,-0.042241148342959,0,0.208871915315994,0.773846624564011,0,0.149940818706253,0,0,-0.373286155956567,0.0151154718511491,-0.0818417114745265,0.516035565012974,0,-0.185515960476616,-0.0987259020443396,0.277819451361891,0.119978511522862,-0.0305280828378416,-0.189981719549847,0.0325651000338363,-0.147240254377244,-0.143134345694811,-0.0656989016062434,-0.20048914488329,0.0968196818063814,0.0660650390574975,-0.115831484971279,0,0,0,-0.480396338901419,0,0.0264830146964705,0.546579891261435,0.0170600469278935,0.127861148426105,-0.188821459314451,0.0799128377732135,0.0466228698903217,0.0773412380766264,-0.248564537580601,0,-0.246913568158937,0.0462931528176315,0.116873766533297,0,0.00477140109423102,0.00994182411023548,-0.115917858744347,0,-0.367103695277684,0.216403187258642,0,0.10564369703809,-0.255159024888152,0,0,-0.0383962473931417,0,0,0,0,0,0.226088296085917,0.0720202815057661,0.0518918867804651,0,0.085738063800506,0,0.18052984103744,0,-0.0700980488341147,0.237385513265253,-0.181200385827995,-0.0893291536608447,0,0.142064448010151,0.0540024510837054,0.146120650549988,0.155006567270217,0.0584269397214717,-0.118959509239799,-0.359063138260801,-0.256484544322751,0.0852420986922587,0.330964951082513,0.96072063155129,-0.0417723708066839,-0.428272102842454,0.116355799596033,0.0432629802903326,-0.120170461153832,0,-0.0534007292866787,0,-0.11388887813695,0,0.156728475071338,0.185740684985757,-0.230417459264692,-0.326970038674208,0,0.290888341319501,0.792294182430779,0.013641465620396,0.200679059948764,-0.0417719209484523,0.455272647675926,-0.0334933168013424,-0.157314983034312,0.180677453520582,-0.138989456679195,0,-0.581208243073663,0,0,0.186905336017896,-0.235476037764389,0,0.0240572443636577,0.246681267474694,-0.198697698972985,-0.115971073434934,0.349317513489525,0,-0.0682989653307701,0,0,0.648960152173632,-0.0476229483497312,0.391535156390006,-0.0444544261707617,-0.0525627030684395,0.301569360471708,0,0,0.322380548469157,0,0.05743017452277,0,0,-0.047122125487669,0.000245653543164151,0,0,0.116873766533297,0,0,0,0,0,0,0,0,-0.0511402291891796,-0.237959563683151,0,0.00246156623968297,0,0,0,0,0,0,0.116873766533297,0,0.685685399859056,0.111675547071659,-0.00614364914312333,0,0,0,0,-0.0988496360201777,0.00563535322127021,0,-0.131862706497632,0,0,0,0,-0.0861409897892114,0,0,0,0.0584368832666485,0.15114145826233,0.314678244047352,0,0,0,0.178318246074136,0,0,0,0,-0.182265728316213,0,0,0.37938830696226,0,-0.186585582582165,0.0352918869864555,0,-0.131100505519611,0.000570474941865129,0.481606193905564,0,0,-0.144473365256591,0,0.0997369662376595,-0.065707238447054,0,0,0,0,0,0,0,0,0,-0.0974407458664587,0.116873766533297,0,0,0,0,0,0,0,0,0,0,-0.317541346447618,0.0246497098747865,0,0,0,0,0,0,0,-0.0241060230789031,0.035261722451861,0.0584368832666485,0,0.0164098786445557,0,0,0.116873766533297,0,0,0.0689550438150281,0,0,0,0,0,0.0198814052906918,0,0,0,0.116873766533297,0.642861463708238,0,0,0.334150292342418,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,-0.0064453195021508,0.548033929475787,0,0,0,0,0,0,0,0.00991415012991942,0,0,0,0,-0.113884373708977,0,0,0,0.35047626288677,0,0.188999483403139,0,0,0,0.0584368832666485,0,0,0,0,0,0,0,0,0,0,0,0,0,0.174658756744763,0,0,0,0.174921930585087,0,-0.0783356006569158,0.116873766533297,0,0,-0.057969595888279,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00293104421826635,0,0,0,0,0,0,0,0.186789552067952,0,0,-0.0335959265338777,0,0,0,0,0,0,-0.087166233222056,0.62533614549652,-0.0860191965171747,0,0,0,0.00405131078419347,0,0,0.0331005885854472,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0364492438151307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.024425519991232,0,0,0.116873766533297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128853447047356,0,0,0,-0.00421431434104971,0,0,0,0,0,0,0,0,0.208871915315994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,0.17197250571156,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.124495283085967,0,0,0.405518342222309,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0268973301462423,0,0,0,0,0.161234804655075,0,0,0,0,0,0,0,0.0170074598561438,0,0,0,0,0,0,0,0,0,0,0,0,0,0.41900600162746,0,0,0.0519815692830131,0,0,0,0,0,0,0,0,0,0,0,0,0.287997334339399,0,0,0,0,0,0,0,0,0,0,0.236317406110341,0,0,0,0,0,0,0,0,0,0,0.208871915315994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.253238175244795,0.404847272001432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208871915315994,0,0,0,0,0,0,0,0,0,0,0,0,-0.151964904996243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0287399608939727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208871915315994,0,0,0.104435957657997,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,0,0,0.116873766533297,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,0.116873766533297,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,0,0,0,-0.503522652216307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156570325644603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,-0.0148626901185022,0,0,0,0,0,0,0,-0.00582223046370396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0346970997490866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0267202972182653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129129916651016,0,0,0,0,0,0,0,0,0,0,0.116873766533297,0,0,0,0,0,0,0,0.0195301393202,0,0.104435957657997,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0160828232455653,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238762703809391,0,0,0,0,0,0,0.0584368832666485,0,0,0,-0.0412500915278073,0.202759171111154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109759631160827,0,0,-0.0422874684771159,0,0.285375851093724,0.0742520071466481,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104435957657997,0,0,0,0,0,-0.0329025447658974,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00467535301304406,0,0.0099565718678614,0.00844365370029454,0,0,-0.0705288764554781,0.00990734107241878,0.116873766533297,0.0798418778949559,0,0,0.0338790202256949,-0.226916645085839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.405518342222309,0.116873766533297,0.116873766533297,-0.0568589461625992,0.270905347883701,0.208871915315994,0.076436393325502,0,0,0.0136832807433653,0,0,0.116873766533297,0.112912507942407
Line 91: Line 100:
|top_motifs=HOXA9_MEIS1:1.63242599923;NKX3-1:1.47227217076;TEAD1:1.16531608044;ZIC1..3:1.16400689966;NKX3-2:1.02217503507;GLI1..3:0.988277017834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.978645953728;EP300:0.964770130817;HAND1,2:0.958631798094;STAT5{A,B}:0.940950100398;TBP:0.814708819419;TOPORS:0.80417157904;GCM1,2:0.763022889706;TEF:0.748299508797;PPARG:0.745234429867;IKZF1:0.742691606503;LMO2:0.717864968916;ZEB1:0.706605599182;NR6A1:0.701377088672;TFCP2:0.697049060763;E2F1..5:0.6917397809;PAX4:0.689480595169;TP53:0.681531272297;EBF1:0.672546179238;XCPE1{core}:0.649138946284;STAT2,4,6:0.635720846352;ADNP_IRX_SIX_ZHX:0.627874656277;HOX{A5,B5}:0.5920929859;HES1:0.565756603928;MYOD1:0.540045650163;ZNF148:0.505717902141;PAX5:0.474051123456;GFI1B:0.468751963583;T:0.465541709913;TAL1_TCF{3,4,12}:0.463305552512;LEF1_TCF7_TCF7L1,2:0.446546744478;ESRRA:0.441342061113;SNAI1..3:0.402683365134;GFI1:0.401524769545;UFEwm:0.380289161721;RXRA_VDR{dimer}:0.378793925301;ZNF384:0.370692070146;HOX{A6,A7,B6,B7}:0.362855486998;NFE2:0.346245746688;REST:0.342315320176;POU2F1..3:0.331162153339;ZBTB6:0.3051563896;LHX3,4:0.291086946049;RXR{A,B,G}:0.285549725976;TFAP2B:0.271770632993;NFE2L1:0.256742582991;SMAD1..7,9:0.250217301052;MAZ:0.249544331613;CDC5L:0.246570983498;FOXL1:0.231105457021;FOX{I1,J2}:0.22919878205;TLX1..3_NFIC{dimer}:0.199345094852;bHLH_family:0.199229617595;NANOG:0.194819589295;GTF2I:0.190661133857;EVI1:0.183595204633;POU6F1:0.172197756022;NR3C1:0.153808598717;MTE{core}:0.13609992366;ZNF238:0.128014475339;RREB1:0.110717993731;ZNF423:0.110132496756;ALX1:0.108490681532;NFE2L2:0.108326743118;KLF4:0.0865077915575;ALX4:0.0806913539188;CEBPA,B_DDIT3:0.0798182446184;MYBL2:0.0797765345279;POU5F1:0.0767406378893;TFAP4:0.0578327713658;NR5A1,2:0.0458262955099;TFAP2{A,C}:0.0428187564052;FOS_FOS{B,L1}_JUN{B,D}:0.0398267766861;HSF1,2:0.0343648664445;FOXQ1:0.0166476671006;TBX4,5:0.00471814612915;HIC1:-0.00333164196446;POU1F1:-0.00753565095477;BACH2:-0.010253626584;HNF1A:-0.0151852184795;RORA:-0.019204193468;HLF:-0.0302930038873;ELK1,4_GABP{A,B1}:-0.0325863014683;FOXM1:-0.0494996999308;SP1:-0.062908135558;MAFB:-0.0632879020316;PAX8:-0.0641724564315;CRX:-0.0695056719373;ARID5B:-0.0851609421892;GATA4:-0.0937598380689;MZF1:-0.116672048961;JUN:-0.123167227205;HNF4A_NR2F1,2:-0.136245617807;SRF:-0.139736911481;AIRE:-0.150211516712;MED-1{core}:-0.15656161521;PITX1..3:-0.156725818066;PRRX1,2:-0.162512663742;EGR1..3:-0.181078971796;SOX5:-0.181484765725;SPZ1:-0.187509319079;NKX2-3_NKX2-5:-0.201482458236;GTF2A1,2:-0.203553739438;NFY{A,B,C}:-0.205019528698;VSX1,2:-0.211735846958;ONECUT1,2:-0.214056672093;TLX2:-0.21532717069;MEF2{A,B,C,D}:-0.217113406042;CDX1,2,4:-0.223365456465;TFDP1:-0.229581871499;FOSL2:-0.231647159932;SOX{8,9,10}:-0.232400079758;PAX1,9:-0.247342535173;NKX6-1,2:-0.25101491047;RBPJ:-0.254472900275;GATA6:-0.26052852429;GZF1:-0.267700598245;POU3F1..4:-0.273246875786;MTF1:-0.282559713158;RFX1:-0.309168162021;EN1,2:-0.317939190323;FOXP3:-0.337423327738;NFKB1_REL_RELA:-0.351675411191;HMX1:-0.355527989759;PATZ1:-0.364276948975;STAT1,3:-0.377300468335;SOX2:-0.381349705069;MYB:-0.388788436257;PAX6:-0.39278144428;NRF1:-0.393016963783;HMGA1,2:-0.399437234087;ZNF143:-0.407585193617;NR1H4:-0.41299000471;OCT4_SOX2{dimer}:-0.416034066575;SPIB:-0.422363308189;ESR1:-0.443883278214;PRDM1:-0.461074495327;MYFfamily:-0.465563826728;FOXD3:-0.467541586372;ZBTB16:-0.468656252688;AR:-0.474229355857;HOX{A4,D4}:-0.480092032913;PBX1:-0.493102894436;FOX{F1,F2,J1}:-0.506485478549;RFX2..5_RFXANK_RFXAP:-0.535722305696;ETS1,2:-0.547621768289;YY1:-0.564730075454;IRF7:-0.60604583137;PAX3,7:-0.609625627401;NKX2-1,4:-0.619576339058;NKX2-2,8:-0.620054077444;NFATC1..3:-0.655454267032;NFIX:-0.655729018811;ELF1,2,4:-0.660681711813;PAX2:-0.678158736736;DBP:-0.681387506877;XBP1:-0.683622511794;RUNX1..3:-0.693634419768;ATF5_CREB3:-0.696057303346;IRF1,2:-0.714148575831;FOXP1:-0.717011347369;ATF4:-0.725378285983;SPI1:-0.740509505005;IKZF2:-0.763435283171;BREu{core}:-0.764213473642;NFIL3:-0.804200753454;FOXA2:-0.804257487996;DMAP1_NCOR{1,2}_SMARC:-0.858720520459;NHLH1,2:-0.952512651715;HBP1_HMGB_SSRP1_UBTF:-0.957002398572;ATF2:-0.976319238845;CUX2:-0.985449574573;FOXO1,3,4:-1.08020633018;FOXN1:-1.14166371326;TGIF1:-1.16462197061;NANOG{mouse}:-1.2029097156;FOX{D1,D2}:-1.20365546913;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.20483952148;SREBF1,2:-1.2158075287;ATF6:-1.24242210416;SOX17:-1.25191250343;BPTF:-1.312948757;AHR_ARNT_ARNT2:-1.37277631505;CREB1:-1.57340005806;PDX1:-1.57975584446;HIF1A:-1.77082526294;ZFP161:-1.87598793966
|top_motifs=HOXA9_MEIS1:1.63242599923;NKX3-1:1.47227217076;TEAD1:1.16531608044;ZIC1..3:1.16400689966;NKX3-2:1.02217503507;GLI1..3:0.988277017834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.978645953728;EP300:0.964770130817;HAND1,2:0.958631798094;STAT5{A,B}:0.940950100398;TBP:0.814708819419;TOPORS:0.80417157904;GCM1,2:0.763022889706;TEF:0.748299508797;PPARG:0.745234429867;IKZF1:0.742691606503;LMO2:0.717864968916;ZEB1:0.706605599182;NR6A1:0.701377088672;TFCP2:0.697049060763;E2F1..5:0.6917397809;PAX4:0.689480595169;TP53:0.681531272297;EBF1:0.672546179238;XCPE1{core}:0.649138946284;STAT2,4,6:0.635720846352;ADNP_IRX_SIX_ZHX:0.627874656277;HOX{A5,B5}:0.5920929859;HES1:0.565756603928;MYOD1:0.540045650163;ZNF148:0.505717902141;PAX5:0.474051123456;GFI1B:0.468751963583;T:0.465541709913;TAL1_TCF{3,4,12}:0.463305552512;LEF1_TCF7_TCF7L1,2:0.446546744478;ESRRA:0.441342061113;SNAI1..3:0.402683365134;GFI1:0.401524769545;UFEwm:0.380289161721;RXRA_VDR{dimer}:0.378793925301;ZNF384:0.370692070146;HOX{A6,A7,B6,B7}:0.362855486998;NFE2:0.346245746688;REST:0.342315320176;POU2F1..3:0.331162153339;ZBTB6:0.3051563896;LHX3,4:0.291086946049;RXR{A,B,G}:0.285549725976;TFAP2B:0.271770632993;NFE2L1:0.256742582991;SMAD1..7,9:0.250217301052;MAZ:0.249544331613;CDC5L:0.246570983498;FOXL1:0.231105457021;FOX{I1,J2}:0.22919878205;TLX1..3_NFIC{dimer}:0.199345094852;bHLH_family:0.199229617595;NANOG:0.194819589295;GTF2I:0.190661133857;EVI1:0.183595204633;POU6F1:0.172197756022;NR3C1:0.153808598717;MTE{core}:0.13609992366;ZNF238:0.128014475339;RREB1:0.110717993731;ZNF423:0.110132496756;ALX1:0.108490681532;NFE2L2:0.108326743118;KLF4:0.0865077915575;ALX4:0.0806913539188;CEBPA,B_DDIT3:0.0798182446184;MYBL2:0.0797765345279;POU5F1:0.0767406378893;TFAP4:0.0578327713658;NR5A1,2:0.0458262955099;TFAP2{A,C}:0.0428187564052;FOS_FOS{B,L1}_JUN{B,D}:0.0398267766861;HSF1,2:0.0343648664445;FOXQ1:0.0166476671006;TBX4,5:0.00471814612915;HIC1:-0.00333164196446;POU1F1:-0.00753565095477;BACH2:-0.010253626584;HNF1A:-0.0151852184795;RORA:-0.019204193468;HLF:-0.0302930038873;ELK1,4_GABP{A,B1}:-0.0325863014683;FOXM1:-0.0494996999308;SP1:-0.062908135558;MAFB:-0.0632879020316;PAX8:-0.0641724564315;CRX:-0.0695056719373;ARID5B:-0.0851609421892;GATA4:-0.0937598380689;MZF1:-0.116672048961;JUN:-0.123167227205;HNF4A_NR2F1,2:-0.136245617807;SRF:-0.139736911481;AIRE:-0.150211516712;MED-1{core}:-0.15656161521;PITX1..3:-0.156725818066;PRRX1,2:-0.162512663742;EGR1..3:-0.181078971796;SOX5:-0.181484765725;SPZ1:-0.187509319079;NKX2-3_NKX2-5:-0.201482458236;GTF2A1,2:-0.203553739438;NFY{A,B,C}:-0.205019528698;VSX1,2:-0.211735846958;ONECUT1,2:-0.214056672093;TLX2:-0.21532717069;MEF2{A,B,C,D}:-0.217113406042;CDX1,2,4:-0.223365456465;TFDP1:-0.229581871499;FOSL2:-0.231647159932;SOX{8,9,10}:-0.232400079758;PAX1,9:-0.247342535173;NKX6-1,2:-0.25101491047;RBPJ:-0.254472900275;GATA6:-0.26052852429;GZF1:-0.267700598245;POU3F1..4:-0.273246875786;MTF1:-0.282559713158;RFX1:-0.309168162021;EN1,2:-0.317939190323;FOXP3:-0.337423327738;NFKB1_REL_RELA:-0.351675411191;HMX1:-0.355527989759;PATZ1:-0.364276948975;STAT1,3:-0.377300468335;SOX2:-0.381349705069;MYB:-0.388788436257;PAX6:-0.39278144428;NRF1:-0.393016963783;HMGA1,2:-0.399437234087;ZNF143:-0.407585193617;NR1H4:-0.41299000471;OCT4_SOX2{dimer}:-0.416034066575;SPIB:-0.422363308189;ESR1:-0.443883278214;PRDM1:-0.461074495327;MYFfamily:-0.465563826728;FOXD3:-0.467541586372;ZBTB16:-0.468656252688;AR:-0.474229355857;HOX{A4,D4}:-0.480092032913;PBX1:-0.493102894436;FOX{F1,F2,J1}:-0.506485478549;RFX2..5_RFXANK_RFXAP:-0.535722305696;ETS1,2:-0.547621768289;YY1:-0.564730075454;IRF7:-0.60604583137;PAX3,7:-0.609625627401;NKX2-1,4:-0.619576339058;NKX2-2,8:-0.620054077444;NFATC1..3:-0.655454267032;NFIX:-0.655729018811;ELF1,2,4:-0.660681711813;PAX2:-0.678158736736;DBP:-0.681387506877;XBP1:-0.683622511794;RUNX1..3:-0.693634419768;ATF5_CREB3:-0.696057303346;IRF1,2:-0.714148575831;FOXP1:-0.717011347369;ATF4:-0.725378285983;SPI1:-0.740509505005;IKZF2:-0.763435283171;BREu{core}:-0.764213473642;NFIL3:-0.804200753454;FOXA2:-0.804257487996;DMAP1_NCOR{1,2}_SMARC:-0.858720520459;NHLH1,2:-0.952512651715;HBP1_HMGB_SSRP1_UBTF:-0.957002398572;ATF2:-0.976319238845;CUX2:-0.985449574573;FOXO1,3,4:-1.08020633018;FOXN1:-1.14166371326;TGIF1:-1.16462197061;NANOG{mouse}:-1.2029097156;FOX{D1,D2}:-1.20365546913;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.20483952148;SREBF1,2:-1.2158075287;ATF6:-1.24242210416;SOX17:-1.25191250343;BPTF:-1.312948757;AHR_ARNT_ARNT2:-1.37277631505;CREB1:-1.57340005806;PDX1:-1.57975584446;HIF1A:-1.77082526294;ZFP161:-1.87598793966
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10855-111F9;search_select_hide=table117:FF:10855-111F9
}}
}}

Latest revision as of 15:10, 3 June 2020

Name:mesothelioma cell line:Mero-84
Species:Human (Homo sapiens)
Library ID:CNhs13072
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexmale
ageunknown
cell typemesothelial cell
cell lineMero-84
companyECACC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005214
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13072 CAGE DRX007944 DRR008816
Accession ID Hg19

Library idBAMCTSS
CNhs13072 DRZ000241 DRZ001626
Accession ID Hg38

Library idBAMCTSS
CNhs13072 DRZ011591 DRZ012976
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.00501
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.247
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0163
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.297
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.224
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.326
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.349
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.331
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.209
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.117
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.313
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.117
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.398
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.169
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.406
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.117
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.117
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13072

Jaspar motifP-value
MA0002.20.597
MA0003.10.26
MA0004.10.324
MA0006.10.044
MA0007.10.864
MA0009.10.328
MA0014.10.84
MA0017.10.598
MA0018.20.00314
MA0019.10.84
MA0024.10.396
MA0025.10.00175
MA0027.11
MA0028.10.541
MA0029.10.782
MA0030.10.359
MA0031.10.00101
MA0035.20.0118
MA0038.10.897
MA0039.20.292
MA0040.10.174
MA0041.10.945
MA0042.10.667
MA0043.11.4671e-5
MA0046.10.647
MA0047.20.11
MA0048.10.317
MA0050.13.24402e-6
MA0051.10.0157
MA0052.10.745
MA0055.10.183
MA0057.10.0901
MA0058.10.103
MA0059.10.759
MA0060.10.453
MA0061.10.778
MA0062.20.0335
MA0065.20.0499
MA0066.10.146
MA0067.15.25629e-4
MA0068.10.319
MA0069.10.887
MA0070.10.836
MA0071.10.251
MA0072.10.935
MA0073.10.926
MA0074.10.549
MA0076.10.0851
MA0077.10.946
MA0078.10.162
MA0079.20.523
MA0080.21.15441e-8
MA0081.10.00279
MA0083.10.932
MA0084.10.019
MA0087.10.652
MA0088.10.208
MA0090.11.38225e-5
MA0091.10.722
MA0092.10.251
MA0093.10.312
MA0099.20.0173
MA0100.10.0674
MA0101.10.223
MA0102.20.923
MA0103.13.98056e-4
MA0104.20.416
MA0105.10.377
MA0106.10.24
MA0107.10.138
MA0108.20.00181
MA0111.10.49
MA0112.20.00462
MA0113.10.584
MA0114.10.31
MA0115.10.77
MA0116.10.0592
MA0117.10.436
MA0119.10.21
MA0122.10.496
MA0124.10.207
MA0125.10.524
MA0131.10.283
MA0135.10.828
MA0136.11.91906e-7
MA0137.20.52
MA0138.20.749
MA0139.10.147
MA0140.10.109
MA0141.10.0437
MA0142.10.777
MA0143.10.7
MA0144.10.823
MA0145.10.0195
MA0146.10.169
MA0147.10.699
MA0148.10.349
MA0149.10.223
MA0150.10.471
MA0152.10.373
MA0153.10.406
MA0154.10.0907
MA0155.10.144
MA0156.12.96698e-4
MA0157.10.0132
MA0159.10.117
MA0160.10.287
MA0162.10.079
MA0163.10.384
MA0164.10.495
MA0258.10.0467
MA0259.10.359



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13072

Novel motifP-value
10.333
100.16
1000.225
1010.172
1020.274
1030.286
1040.712
1050.915
1060.179
1070.0547
1080.773
1090.0539
110.262
1100.0336
1110.961
1120.496
1130.397
1140.764
1150.192
1160.0557
1170.147
1180.724
1190.176
120.828
1200.11
1210.858
1220.607
1230.731
1240.97
1250.0318
1260.635
1270.274
1280.333
1290.298
130.138
1300.226
1310.951
1320.31
1330.155
1340.768
1350.674
1360.469
1370.059
1380.471
1390.323
140.914
1400.66
1410.164
1420.694
1430.482
1440.438
1450.512
1460.155
1470.0606
1480.406
1490.0588
150.344
1500.255
1510.338
1520.0253
1530.988
1540.764
1550.833
1560.197
1570.455
1580.0228
1590.366
160.0813
1600.0172
1610.0266
1620.0181
1630.919
1640.484
1650.976
1660.213
1670.196
1680.466
1690.0429
170.44
180.407
190.434
20.197
200.251
210.349
220.257
230.289
240.49
250.975
260.748
270.233
280.895
290.633
30.593
300.235
310.678
320.193
330.557
340.485
350.788
360.81
370.371
380.564
390.322
40.922
400.0154
410.0341
420.28
430.833
440.238
450.235
460.301
470.308
480.15
490.732
50.886
500.985
510.351
520.464
530.77
540.253
550.141
560.103
570.114
580.747
590.0884
60.745
600.558
610.896
620.684
630.221
640.127
650.513
660.273
670.187
680.125
690.0117
70.347
700.405
710.297
720.679
730.121
740.967
750.988
760.26
770.00253
780.0477
790.627
80.0529
800.645
810.0347
820.0977
830.372
840.64
850.389
860.947
870.0351
880.725
890.0285
90.676
900.109
910.625
920.361
930.65
940.239
950.254
960.625
970.857
980.635
990.00829



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13072


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:10855-111F9&oldid=4576264"