FFCP PHASE1:Hg19::chr11:124767798..124767809,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:124767798..124767809,- to FFCP PHASE1:Hg19::chr11:124767798..124767809,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54538 | |EntrezGene=54538 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17985 | |HGNC=17985 | ||
|TSSclassifier=strong | |||
|UniProt=Q8WZ75 | |UniProt=Q8WZ75 | ||
|association_with_transcript=21bp_to_NM_019055,uc001qbg.2,uc001qbh.2,uc010sas.1_5end | |||
|cluster_id=chr11:124767798..124767809,- | |||
|coexpression_cluster_id=C140 | |||
|description=CAGE_peak_3_at_ROBO4_5end | |||
|id=chr11:124767798..124767809,- | |||
|ontology_enrichment_celltype=CL:0002139!2.54e-35!24;CL:0000115!3.85e-33!35;CL:0000071!8.09e-27!18;CL:0002546!8.09e-27!18;CL:0002078!5.09e-26!44;CL:0000213!2.64e-17!57;CL:0000215!2.64e-17!57;CL:1000413!3.63e-14!9;CL:0005020!5.10e-10!6;CL:0002138!5.10e-10!6;CL:0005022!5.10e-10!6;CL:0002543!6.86e-10!6;CL:0002544!8.18e-10!6;CL:0000222!6.93e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0002139;4.20e-93;24!CL:0000115;2.53e-80;36!CL:0000071;6.77e-70;18!CL:0002078;1.26e-52;45!CL:1000413;1.64e-35;9!CL:0000213;5.80e-34;58!CL:0000215;5.80e-34;58!CL:0002138;2.44e-24;6!CL:0002543;6.35e-24;6!CL:0002544;9.07e-24;6!CL:0002144;1.39e-13;3!CL:0002188;2.00e-13;5!CL:0002618;2.02e-12;3!CL:0000076;1.25e-10;63!CL:1000746;1.34e-09;7!CL:1000612;1.34e-09;7!CL:0002262;3.84e-09;2!CL:1000398;3.84e-09;2!CL:0002545;4.16e-09;2!CL:0002681;3.70e-08;12!CL:0002584;3.70e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,8.76e-96,36;CL:0002139,4.14e-93,24;CL:0002078,3.15e-80,45;CL:0000071,6.28e-70,18;CL:0002546,6.28e-70,18;CL:0000213,1.44e-56,58;CL:0000215,1.44e-56,58;CL:1000413,1.58e-35,9;CL:0000222,5.79e-25,121;CL:0005020,2.60e-24,6;CL:0002138,2.60e-24,6;CL:0005022,2.60e-24,6;CL:0002543,5.76e-24,6;CL:0002544,9.27e-24,6;CL:0000076,1.04e-16,63;CL:0002144,1.48e-13,3;CL:0002188,2.13e-13,5;CL:0002618,1.86e-12,3;CL:1000746,1.40e-09,7;CL:1000612,1.40e-09,7;CL:0002262,3.47e-09,2;CL:1000398,3.47e-09,2;CL:0002545,4.42e-09,2;CL:0002321,6.86e-09,250;CL:0002681,3.54e-08,12;CL:0002584,3.54e-08,12;CL:0000066,4.44e-08,253 | |||
|ontology_enrichment_development_v019=CL:0002546;6.77e-70;18!CL:0005022;2.44e-24;6!CL:0000222;1.90e-10;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.98e-36!115;UBERON:0001986!8.09e-27!18;UBERON:0004638!8.09e-27!18;UBERON:0004852!8.09e-27!18;UBERON:0004111!2.66e-23!241;UBERON:0000025!6.14e-23!194;UBERON:0000477!1.87e-21!286;UBERON:0000487!1.05e-20!22;UBERON:0006914!1.98e-17!25;UBERON:0000119!1.44e-16!312;UBERON:0000483!1.08e-15!309;UBERON:0000055!2.12e-15!69;UBERON:0001049!7.56e-15!57;UBERON:0005068!7.56e-15!57;UBERON:0006241!7.56e-15!57;UBERON:0007135!7.56e-15!57;UBERON:0003915!3.63e-14!9;UBERON:0004700!3.63e-14!9;UBERON:0001917!3.63e-14!9;UBERON:0002616!5.90e-13!59;UBERON:0004872!7.25e-13!84;UBERON:0003080!2.20e-12!42;UBERON:0003075!2.83e-12!86;UBERON:0007284!2.83e-12!86;UBERON:0002049!4.33e-12!79;UBERON:0007798!4.33e-12!79;UBERON:0002780!1.44e-11!41;UBERON:0001890!1.44e-11!41;UBERON:0006240!1.44e-11!41;UBERON:0001981!2.61e-11!60;UBERON:0007500!2.61e-11!60;UBERON:0004537!2.61e-11!60;UBERON:0006965!2.61e-11!60;UBERON:0002346!2.99e-11!90;UBERON:0001009!3.12e-11!113;UBERON:0000955!3.89e-11!69;UBERON:0006238!3.89e-11!69;UBERON:0003914!7.95e-11!118;UBERON:0005743!8.13e-11!86;UBERON:0001017!3.11e-10!82;UBERON:0004535!1.04e-09!110;UBERON:0000073!7.14e-09!94;UBERON:0001016!7.14e-09!94;UBERON:0000467!1.56e-08!625;UBERON:0000480!1.83e-08!626;UBERON:0000468!4.17e-08!659;UBERON:0001638!5.03e-08!9;UBERON:0003920!5.03e-08!9;UBERON:0004582!5.03e-08!9;UBERON:0003056!5.81e-08!61;UBERON:0002020!7.78e-08!34;UBERON:0003528!7.78e-08!34;UBERON:0001893!1.27e-07!34;UBERON:0002465!3.47e-07!10;UBERON:0001473!3.50e-07!8;UBERON:0004536!3.50e-07!8;UBERON:0006558!3.50e-07!8;UBERON:0002791!3.95e-07!33;UBERON:0002298!7.98e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;6.77e-70;18!UBERON:0001986;6.77e-70;18!UBERON:0004852;6.77e-70;18!UBERON:0000487;2.42e-56;22!UBERON:0006914;5.04e-49;25!UBERON:0003915;1.64e-35;9!UBERON:0004700;1.64e-35;9!UBERON:0001917;1.64e-35;9!UBERON:0000490;3.91e-33;33!UBERON:0000055;2.05e-20;65!UBERON:0001473;4.33e-18;8!UBERON:0004536;4.33e-18;8!UBERON:0006558;4.33e-18;8!UBERON:0001638;9.84e-16;9!UBERON:0003920;9.84e-16;9!UBERON:0004582;9.84e-16;9!UBERON:0007500;2.65e-15;56!UBERON:0001981;2.65e-15;56!UBERON:0004537;2.65e-15;56!UBERON:0002465;2.46e-14;10!UBERON:0010523;1.39e-13;3!UBERON:0001915;1.39e-13;3!UBERON:0001982;1.39e-13;3!UBERON:0002049;3.28e-13;75!UBERON:0007798;3.28e-13;75!UBERON:0003914;5.93e-13;74!UBERON:0000353;2.95e-12;15!UBERON:0000025;1.98e-11;93!UBERON:0004535;9.05e-11;109!UBERON:0000074;1.34e-09;7!UBERON:0001229;1.34e-09;7!UBERON:0001281;3.84e-09;2!UBERON:0003497;3.84e-09;2!UBERON:0003909;3.84e-09;2!UBERON:0003835;3.84e-09;2!UBERON:0005800;4.16e-09;2!UBERON:0001515;4.16e-09;2!UBERON:0001009;4.98e-09;112!UBERON:0004111;6.39e-09;130!UBERON:0002133;1.62e-08;2!UBERON:0002405;3.06e-08;27!UBERON:0001225;3.70e-08;12!UBERON:0008987;3.70e-08;12!UBERON:0002066;1.27e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,6.28e-70,18;UBERON:0001986,6.28e-70,18;UBERON:0004852,6.28e-70,18;UBERON:0000487,2.27e-56,22;UBERON:0006914,4.77e-49,25;UBERON:0000055,3.43e-40,68;UBERON:0003915,1.58e-35,9;UBERON:0004700,1.58e-35,9;UBERON:0001917,1.58e-35,9;UBERON:0002049,4.00e-34,78;UBERON:0007798,4.00e-34,78;UBERON:0004872,2.08e-28,83;UBERON:0007500,6.46e-28,59;UBERON:0001981,6.46e-28,59;UBERON:0004537,6.46e-28,59;UBERON:0006965,6.46e-28,59;UBERON:0004535,4.55e-26,109;UBERON:0003914,2.26e-25,117;UBERON:0001009,3.60e-25,112;UBERON:0004111,7.20e-20,240;UBERON:0000025,3.97e-18,192;UBERON:0001473,4.53e-18,8;UBERON:0004536,4.53e-18,8;UBERON:0006558,4.53e-18,8;UBERON:0001638,9.23e-16,9;UBERON:0003920,9.23e-16,9;UBERON:0004582,9.23e-16,9;UBERON:0002465,2.55e-14,10;UBERON:0010523,1.48e-13,3;UBERON:0001915,1.48e-13,3;UBERON:0001982,1.48e-13,3;UBERON:0003081,2.20e-12,203;UBERON:0000353,2.68e-12,15;UBERON:0003887,2.13e-11,12;UBERON:0000483,7.77e-10,306;UBERON:0000490,8.50e-10,148;UBERON:0000119,1.17e-09,309;UBERON:0010532,1.40e-09,7;UBERON:0000074,1.40e-09,7;UBERON:0001229,1.40e-09,7;UBERON:0001230,1.40e-09,7;UBERON:0003220,1.40e-09,7;UBERON:0005749,1.40e-09,7;UBERON:0004199,1.40e-09,7;UBERON:0004209,1.40e-09,7;UBERON:0004198,1.40e-09,7;UBERON:0001281,3.47e-09,2;UBERON:0003497,3.47e-09,2;UBERON:0003909,3.47e-09,2;UBERON:0003835,3.47e-09,2;UBERON:0005800,4.42e-09,2;UBERON:0001515,4.42e-09,2;UBERON:0002133,1.89e-08,2;UBERON:0005103,2.21e-08,8;UBERON:0000083,2.21e-08,8;UBERON:0009201,2.21e-08,8;UBERON:0006553,2.21e-08,8;UBERON:0003074,2.21e-08,8;UBERON:0003060,2.21e-08,8;UBERON:0001225,3.54e-08,12;UBERON:0008987,3.54e-08,12;UBERON:0002066,1.21e-07,5;UBERON:0000080,1.89e-07,9;UBERON:0002120,1.89e-07,9;UBERON:0004875,1.89e-07,9;UBERON:0005721,1.89e-07,9;UBERON:0005754,1.89e-07,9;UBERON:0007297,1.89e-07,9;UBERON:0000058,3.65e-07,19 | |||
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| ||
|short_description=p3@ROBO4 | |||
}} | }} |
Latest revision as of 12:15, 16 September 2015
Short description: | p3@ROBO4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ROBO4_5end |
Coexpression cluster: | C140_Renal_Endothelial_Hepatic_Lymphatic_heart_lung_spleen |
Association with transcript: | 21bp_to_NM_019055, uc001qbg.2, uc001qbh.2, uc010sas.1_5end |
EntrezGene: | ROBO4 |
HGNC: | 17985 |
UniProt: | Q8WZ75 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 8.76e-96 | 36 |
endothelial cell of vascular tree | 4.14e-93 | 24 |
meso-epithelial cell | 3.15e-80 | 45 |
blood vessel endothelial cell | 6.28e-70 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.28e-70 | 18 |
lining cell | 1.44e-56 | 58 |
barrier cell | 1.44e-56 | 58 |
endothelial cell of artery | 1.58e-35 | 9 |
mesodermal cell | 5.79e-25 | 121 |
lymphangioblast | 2.60e-24 | 6 |
endothelial cell of lymphatic vessel | 2.60e-24 | 6 |
vascular lymphangioblast | 2.60e-24 | 6 |
vein endothelial cell | 5.76e-24 | 6 |
aortic endothelial cell | 9.27e-24 | 6 |
squamous epithelial cell | 1.04e-16 | 63 |
capillary endothelial cell | 1.48e-13 | 3 |
glomerular endothelial cell | 2.13e-13 | 5 |
endothelial cell of umbilical vein | 1.86e-12 | 3 |
glomerular cell | 1.40e-09 | 7 |
kidney corpuscule cell | 1.40e-09 | 7 |
endothelial cell of sinusoid | 3.47e-09 | 2 |
endothelial cell of hepatic sinusoid | 3.47e-09 | 2 |
thoracic aorta endothelial cell | 4.42e-09 | 2 |
embryonic cell | 6.86e-09 | 250 |
kidney cortical cell | 3.54e-08 | 12 |
renal cortical epithelial cell | 3.54e-08 | 12 |
epithelial cell | 4.44e-08 | 253 |