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{{f5samples
{{f5samples
|id=FF:11335-117F3
|DRA_sample_Accession=CAGE@SAMD00005488
|name=Smooth Muscle Cells - Prostate, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005488
|sample_id=11335
|accession_numbers=CAGE;DRX008496;DRR009368;DRZ000793;DRZ002178;DRZ012143;DRZ013528
|rna_tube_id=117F3
|accession_numbers_RNASeq=sRNA-Seq;DRX037245;DRR041611;DRZ007253
|rna_box=117
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|rna_position=F3
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0000393,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000255,CL:1000487
|sample_cell_lot=lot:9F0798
|sample_cell_catalog=CC-2587
|sample_company=Lonza
|rna_lot_number=
|rna_catalog_number=N/A
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=34 years old adult
|sample_tissue=prostate
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=34
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=1.55
|rna_od260/280=2.08
|sample_cell_type=smooth muscle cell
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=35.9
|rna_concentration=1.4
|sample_note=
|profile_hcage=CNhs11976,LSID836,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10014,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000055,CL:0000056,CL:0000144,CL:0000183,CL:0000187,CL:0000192,CL:0000211,CL:0000220,CL:0000222,CL:0000255,CL:0000355,CL:0000393,CL:0000514,CL:0000548,CL:0000680,CL:0000723,CL:0002321,CL:0002371,CL:1000487
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000079,UBERON:0000119,UBERON:0000161,UBERON:0000162,UBERON:0000163,UBERON:0000164,UBERON:0000383,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000486,UBERON:0000490,UBERON:0000914,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000990,UBERON:0001007,UBERON:0001015,UBERON:0001046,UBERON:0001062,UBERON:0001134,UBERON:0001353,UBERON:0001555,UBERON:0002036,UBERON:0002050,UBERON:0002204,UBERON:0002329,UBERON:0002367,UBERON:0002385,UBERON:0002530,UBERON:0002532,UBERON:0003059,UBERON:0003064,UBERON:0003077,UBERON:0003082,UBERON:0003101,UBERON:0003104,UBERON:0003353,UBERON:0003820,UBERON:0003929,UBERON:0003937,UBERON:0004111,UBERON:0004119,UBERON:0004120,UBERON:0004122,UBERON:0004185,UBERON:0004290,UBERON:0004902,UBERON:0004921,UBERON:0005153,UBERON:0005156,UBERON:0005291,UBERON:0005399,UBERON:0005423,UBERON:0005911,UBERON:0006866,UBERON:0007026,UBERON:0009142
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000167,FF:0000183
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000514
|fonse_cell_line=
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|fonse_cell_line_closure=
Line 66: Line 43:
|fonse_treatment=
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|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
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|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Smooth%2520Muscle%2520Cells%2520-%2520Prostate%252c%2520donor2.CNhs11976.11335-117F3.hg38.nobarcode.ctss.bed.gz
|id=FF:11335-117F3
|is_a=EFO:0002091;;FF:0000183
|is_obsolete=
|library_id=CNhs11976
|library_id_phase_based=2:CNhs11976
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11335
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.GAGTGG.11335
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11335
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.GAGTGG.11335
|name=Smooth Muscle Cells - Prostate, donor2
|namespace=FANTOM5
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|rna_box=117
|rna_catalog_number=N/A
|rna_concentration=1.4
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.55
|rna_od260/280=2.08
|rna_position=F3
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=117F3
|rna_weight_ug=35.9
|rnaseq_library_id=SRhi10014.GAGTGG
|sample_age=34
|sample_category=primary cells
|sample_cell_catalog=CC-2587
|sample_cell_line=
|sample_cell_lot=lot:9F0798
|sample_cell_type=smooth muscle cell
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Lonza
|sample_description=
|sample_dev_stage=34 years old adult
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.68815434893982e-217!GO:0005737;cytoplasm;2.11707948088351e-192!GO:0043231;intracellular membrane-bound organelle;7.94868751602641e-169!GO:0043227;membrane-bound organelle;7.94868751602641e-169!GO:0043226;organelle;5.84259283299827e-168!GO:0043229;intracellular organelle;1.5653984359757e-167!GO:0044444;cytoplasmic part;1.78562008915983e-145!GO:0044422;organelle part;3.41717096657063e-124!GO:0044446;intracellular organelle part;1.78477121723932e-122!GO:0032991;macromolecular complex;4.12715573832953e-85!GO:0030529;ribonucleoprotein complex;1.00527361614211e-82!GO:0044238;primary metabolic process;2.45710127002301e-82!GO:0044237;cellular metabolic process;1.93480854196237e-81!GO:0043170;macromolecule metabolic process;3.80604373256168e-73!GO:0005515;protein binding;7.77123103039559e-71!GO:0005739;mitochondrion;6.10407811699758e-67!GO:0043233;organelle lumen;8.47743695573132e-67!GO:0031974;membrane-enclosed lumen;8.47743695573132e-67!GO:0003723;RNA binding;7.01250797686661e-63!GO:0044428;nuclear part;1.63608962840076e-58!GO:0005840;ribosome;2.14816894205576e-53!GO:0031090;organelle membrane;2.29114105819493e-53!GO:0019538;protein metabolic process;1.52063575624859e-52!GO:0005634;nucleus;2.10755709225139e-52!GO:0006412;translation;1.36011241006579e-49!GO:0003735;structural constituent of ribosome;4.76745553716652e-47!GO:0044260;cellular macromolecule metabolic process;4.95676802483449e-47!GO:0044267;cellular protein metabolic process;5.52420550798704e-46!GO:0009058;biosynthetic process;5.55092368289478e-45!GO:0044429;mitochondrial part;3.07843615590837e-44!GO:0015031;protein transport;8.83465914221937e-43!GO:0016043;cellular component organization and biogenesis;6.44748861758865e-42!GO:0044249;cellular biosynthetic process;2.14168350365655e-41!GO:0033036;macromolecule localization;3.26395875253874e-41!GO:0006396;RNA processing;8.88900579693739e-41!GO:0043234;protein complex;1.07573102796695e-40!GO:0033279;ribosomal subunit;1.91934814341022e-40!GO:0009059;macromolecule biosynthetic process;4.01924441858445e-39!GO:0045184;establishment of protein localization;4.96927708914304e-39!GO:0005829;cytosol;7.75964407586863e-39!GO:0008104;protein localization;1.58508916456413e-38!GO:0031967;organelle envelope;4.30219220769599e-38!GO:0031975;envelope;1.06008387598058e-37!GO:0031981;nuclear lumen;1.38099327132778e-36!GO:0043283;biopolymer metabolic process;1.51920061575832e-34!GO:0010467;gene expression;3.63917537040472e-34!GO:0016071;mRNA metabolic process;1.10172247304852e-32!GO:0046907;intracellular transport;2.08132246066516e-31!GO:0008380;RNA splicing;9.95310845022821e-31!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.22006430909191e-30!GO:0065003;macromolecular complex assembly;2.35364184280431e-29!GO:0005740;mitochondrial envelope;8.0681275709049e-29!GO:0006397;mRNA processing;8.7456947628536e-28!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.7456947628536e-28!GO:0031966;mitochondrial membrane;3.36576594567034e-27!GO:0019866;organelle inner membrane;5.64366085430118e-27!GO:0006886;intracellular protein transport;1.10988654443567e-26!GO:0022607;cellular component assembly;1.22074788125205e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;4.3189527658678e-26!GO:0005743;mitochondrial inner membrane;1.44692761507128e-25!GO:0005783;endoplasmic reticulum;1.77926238697878e-25!GO:0044445;cytosolic part;1.06600622555916e-23!GO:0006996;organelle organization and biogenesis;1.88205954304554e-23!GO:0005654;nucleoplasm;2.14106137394478e-23!GO:0006119;oxidative phosphorylation;6.64224186107293e-23!GO:0012505;endomembrane system;7.09867929275532e-23!GO:0005681;spliceosome;7.85126972551521e-22!GO:0006457;protein folding;3.7621767426437e-21!GO:0015934;large ribosomal subunit;7.27532003127079e-21!GO:0015935;small ribosomal subunit;1.35146101967556e-20!GO:0044455;mitochondrial membrane part;1.7195983438633e-20!GO:0043228;non-membrane-bound organelle;6.74047000048464e-20!GO:0043232;intracellular non-membrane-bound organelle;6.74047000048464e-20!GO:0051649;establishment of cellular localization;7.66821599399769e-20!GO:0048770;pigment granule;1.08847314457721e-19!GO:0042470;melanosome;1.08847314457721e-19!GO:0051641;cellular localization;1.2381806922091e-19!GO:0044451;nucleoplasm part;1.84781003610715e-19!GO:0044432;endoplasmic reticulum part;2.1717067372492e-19!GO:0031980;mitochondrial lumen;6.46386828536339e-19!GO:0005759;mitochondrial matrix;6.46386828536339e-19!GO:0000166;nucleotide binding;4.88285106019559e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.20564743129728e-17!GO:0016462;pyrophosphatase activity;1.22551046139477e-17!GO:0005794;Golgi apparatus;1.71971329929452e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;1.75665321721186e-17!GO:0005746;mitochondrial respiratory chain;2.69174370130008e-17!GO:0022618;protein-RNA complex assembly;4.14234719412285e-17!GO:0051186;cofactor metabolic process;4.47874628109472e-17!GO:0017111;nucleoside-triphosphatase activity;4.92888356535947e-17!GO:0043285;biopolymer catabolic process;1.41954803183107e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.56600550759484e-16!GO:0008135;translation factor activity, nucleic acid binding;3.25406686053013e-16!GO:0008134;transcription factor binding;3.95575517068926e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.70812309625988e-16!GO:0044265;cellular macromolecule catabolic process;5.98395866130111e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;8.06009669914146e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.03673443461002e-15!GO:0003676;nucleic acid binding;1.10461997146377e-15!GO:0016874;ligase activity;1.56371858523564e-15!GO:0019941;modification-dependent protein catabolic process;1.5833654966926e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.5833654966926e-15!GO:0006259;DNA metabolic process;1.98492579646885e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.98492579646885e-15!GO:0003954;NADH dehydrogenase activity;1.98492579646885e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.98492579646885e-15!GO:0044257;cellular protein catabolic process;2.14118033399523e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.3879395714796e-15!GO:0006512;ubiquitin cycle;3.20224903084463e-15!GO:0048193;Golgi vesicle transport;4.50283908448097e-15!GO:0009057;macromolecule catabolic process;4.9184647639103e-15!GO:0030163;protein catabolic process;5.93780668924266e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);7.58119965287525e-15!GO:0005761;mitochondrial ribosome;1.48664205815926e-14!GO:0000313;organellar ribosome;1.48664205815926e-14!GO:0051082;unfolded protein binding;2.6250265752485e-14!GO:0016192;vesicle-mediated transport;4.31457326992856e-14!GO:0005730;nucleolus;6.13793634455865e-14!GO:0042775;organelle ATP synthesis coupled electron transport;8.26219898856304e-14!GO:0042773;ATP synthesis coupled electron transport;8.26219898856304e-14!GO:0044248;cellular catabolic process;9.98990483772552e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.08769529930944e-13!GO:0030964;NADH dehydrogenase complex (quinone);1.36489039728633e-13!GO:0045271;respiratory chain complex I;1.36489039728633e-13!GO:0005747;mitochondrial respiratory chain complex I;1.36489039728633e-13!GO:0006605;protein targeting;1.44141450198118e-13!GO:0006732;coenzyme metabolic process;1.44992480950304e-13!GO:0005789;endoplasmic reticulum membrane;3.24410244013818e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.62752214682039e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.0097915069416e-13!GO:0007049;cell cycle;4.86263589316776e-13!GO:0016070;RNA metabolic process;8.93380485753204e-13!GO:0003743;translation initiation factor activity;1.09569894982452e-12!GO:0005793;ER-Golgi intermediate compartment;1.35704738770933e-12!GO:0032553;ribonucleotide binding;2.14195745739004e-12!GO:0032555;purine ribonucleotide binding;2.14195745739004e-12!GO:0017076;purine nucleotide binding;2.62060383983563e-12!GO:0009055;electron carrier activity;9.44196730877116e-12!GO:0006413;translational initiation;2.30018963749562e-11!GO:0003712;transcription cofactor activity;2.33665669062458e-11!GO:0043412;biopolymer modification;2.64436930510056e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.71496268067467e-11!GO:0000375;RNA splicing, via transesterification reactions;3.71496268067467e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.71496268067467e-11!GO:0006464;protein modification process;1.73153931562895e-10!GO:0005635;nuclear envelope;4.36072919256644e-10!GO:0042254;ribosome biogenesis and assembly;5.19880489208068e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.19880489208068e-10!GO:0012501;programmed cell death;9.18839394602846e-10!GO:0006446;regulation of translational initiation;9.3536042187173e-10!GO:0048523;negative regulation of cellular process;1.2636770428112e-09!GO:0006915;apoptosis;1.53998759048342e-09!GO:0016604;nuclear body;1.76141155738413e-09!GO:0009259;ribonucleotide metabolic process;1.96630244047784e-09!GO:0016491;oxidoreductase activity;2.09086458476365e-09!GO:0031965;nuclear membrane;2.65044484630367e-09!GO:0022402;cell cycle process;2.94508848395847e-09!GO:0008565;protein transporter activity;3.62007936463924e-09!GO:0032559;adenyl ribonucleotide binding;4.34463179043229e-09!GO:0006913;nucleocytoplasmic transport;4.44846155997628e-09!GO:0006163;purine nucleotide metabolic process;4.51445502564861e-09!GO:0005524;ATP binding;4.57297854936498e-09!GO:0043687;post-translational protein modification;5.12472640463166e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;5.8352729286427e-09!GO:0009150;purine ribonucleotide metabolic process;6.45003989131258e-09!GO:0030554;adenyl nucleotide binding;6.59545549831317e-09!GO:0006974;response to DNA damage stimulus;7.55005812076566e-09!GO:0051169;nuclear transport;8.22692220859186e-09!GO:0051188;cofactor biosynthetic process;8.4381864392209e-09!GO:0006399;tRNA metabolic process;8.86977213417781e-09!GO:0009056;catabolic process;9.21379068316138e-09!GO:0005788;endoplasmic reticulum lumen;9.21379068316138e-09!GO:0019787;small conjugating protein ligase activity;1.00368740293155e-08!GO:0008219;cell death;1.13035705573779e-08!GO:0016265;death;1.13035705573779e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.1914901947367e-08!GO:0008639;small protein conjugating enzyme activity;1.20225427799115e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.22523640325386e-08!GO:0006461;protein complex assembly;1.39944538665037e-08!GO:0009060;aerobic respiration;1.44652483990436e-08!GO:0006164;purine nucleotide biosynthetic process;1.48599101293098e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.7693750687732e-08!GO:0009260;ribonucleotide biosynthetic process;1.81638347585758e-08!GO:0015986;ATP synthesis coupled proton transport;2.03300238502232e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.03300238502232e-08!GO:0009152;purine ribonucleotide biosynthetic process;2.03922638721002e-08!GO:0004842;ubiquitin-protein ligase activity;2.23801745834029e-08!GO:0009199;ribonucleoside triphosphate metabolic process;2.23801745834029e-08!GO:0003924;GTPase activity;3.01097814111362e-08!GO:0044431;Golgi apparatus part;3.09730444782088e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.3819562197486e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.3819562197486e-08!GO:0042623;ATPase activity, coupled;3.79374898569736e-08!GO:0009141;nucleoside triphosphate metabolic process;3.99984076840102e-08!GO:0016887;ATPase activity;4.26344792835929e-08!GO:0044453;nuclear membrane part;4.26344792835929e-08!GO:0009142;nucleoside triphosphate biosynthetic process;5.63194315721807e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.63194315721807e-08!GO:0019829;cation-transporting ATPase activity;5.6937869904981e-08!GO:0045333;cellular respiration;5.80343778711218e-08!GO:0048519;negative regulation of biological process;6.05197705500391e-08!GO:0016881;acid-amino acid ligase activity;6.34821957986459e-08!GO:0017038;protein import;6.61743589193193e-08!GO:0016607;nuclear speck;7.8196879575188e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;8.33271398506423e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;8.33271398506423e-08!GO:0006366;transcription from RNA polymerase II promoter;9.75597736718964e-08!GO:0015078;hydrogen ion transmembrane transporter activity;1.01169302226345e-07!GO:0005768;endosome;1.21769280217215e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;1.34424685323734e-07!GO:0046034;ATP metabolic process;1.41967332020758e-07!GO:0030120;vesicle coat;1.53965682723048e-07!GO:0030662;coated vesicle membrane;1.53965682723048e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.67838097629624e-07!GO:0004812;aminoacyl-tRNA ligase activity;1.67838097629624e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.67838097629624e-07!GO:0051726;regulation of cell cycle;2.29081695480036e-07!GO:0051246;regulation of protein metabolic process;2.4124051567879e-07!GO:0000074;regulation of progression through cell cycle;2.52924723667377e-07!GO:0009117;nucleotide metabolic process;2.76062196062108e-07!GO:0006754;ATP biosynthetic process;2.80909236733936e-07!GO:0006753;nucleoside phosphate metabolic process;2.80909236733936e-07!GO:0006099;tricarboxylic acid cycle;3.34602425463175e-07!GO:0046356;acetyl-CoA catabolic process;3.34602425463175e-07!GO:0043038;amino acid activation;3.40810411138415e-07!GO:0006418;tRNA aminoacylation for protein translation;3.40810411138415e-07!GO:0043039;tRNA aminoacylation;3.40810411138415e-07!GO:0000278;mitotic cell cycle;3.49577380682319e-07!GO:0051187;cofactor catabolic process;3.61327044721277e-07!GO:0008026;ATP-dependent helicase activity;3.86560736251952e-07!GO:0065004;protein-DNA complex assembly;3.94616281062693e-07!GO:0006323;DNA packaging;4.09652597750873e-07!GO:0051276;chromosome organization and biogenesis;4.12975446199384e-07!GO:0031982;vesicle;4.18314220275894e-07!GO:0048475;coated membrane;4.45929663211391e-07!GO:0030117;membrane coat;4.45929663211391e-07!GO:0031988;membrane-bound vesicle;4.58180615204104e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;5.2385505839621e-07!GO:0030532;small nuclear ribonucleoprotein complex;5.51429775405025e-07!GO:0009108;coenzyme biosynthetic process;5.73808536258713e-07!GO:0005839;proteasome core complex (sensu Eukaryota);6.24185486572267e-07!GO:0009109;coenzyme catabolic process;6.36725879360463e-07!GO:0004386;helicase activity;6.36725879360463e-07!GO:0043069;negative regulation of programmed cell death;6.4803281586957e-07!GO:0065002;intracellular protein transport across a membrane;6.53286271417948e-07!GO:0016023;cytoplasmic membrane-bound vesicle;6.61185871528973e-07!GO:0031410;cytoplasmic vesicle;7.10306360297242e-07!GO:0016469;proton-transporting two-sector ATPase complex;7.53397357411046e-07!GO:0006084;acetyl-CoA metabolic process;8.57237827450485e-07!GO:0043066;negative regulation of apoptosis;9.92791332106472e-07!GO:0016853;isomerase activity;9.92791332106472e-07!GO:0050794;regulation of cellular process;1.15233184652073e-06!GO:0045454;cell redox homeostasis;1.29621959855793e-06!GO:0009719;response to endogenous stimulus;1.41707720339664e-06!GO:0005770;late endosome;1.46113453887256e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.92270961473991e-06!GO:0006281;DNA repair;2.01057755231056e-06!GO:0005773;vacuole;2.12916640866841e-06!GO:0045259;proton-transporting ATP synthase complex;2.32057085584937e-06!GO:0005667;transcription factor complex;2.40698335980609e-06!GO:0043067;regulation of programmed cell death;2.43883883957025e-06!GO:0007005;mitochondrion organization and biogenesis;2.45081081533302e-06!GO:0003714;transcription corepressor activity;2.5280959121657e-06!GO:0006916;anti-apoptosis;2.61685225005873e-06!GO:0042981;regulation of apoptosis;2.78944336464367e-06!GO:0006364;rRNA processing;3.48904458028662e-06!GO:0003697;single-stranded DNA binding;3.55623367651002e-06!GO:0006091;generation of precursor metabolites and energy;3.57517563247033e-06!GO:0000139;Golgi membrane;3.59758295086623e-06!GO:0005643;nuclear pore;3.93043867350457e-06!GO:0045786;negative regulation of progression through cell cycle;4.12788372211795e-06!GO:0004298;threonine endopeptidase activity;4.56047899527227e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.86133920398799e-06!GO:0006752;group transfer coenzyme metabolic process;5.93955986046527e-06!GO:0032446;protein modification by small protein conjugation;6.31483449944381e-06!GO:0016072;rRNA metabolic process;6.77368970773336e-06!GO:0008654;phospholipid biosynthetic process;8.22013046954746e-06!GO:0016787;hydrolase activity;8.2631682183993e-06!GO:0005525;GTP binding;8.8731998679524e-06!GO:0016567;protein ubiquitination;9.27927148801762e-06!GO:0006333;chromatin assembly or disassembly;9.64614508351286e-06!GO:0044440;endosomal part;9.84323028688319e-06!GO:0010008;endosome membrane;9.84323028688319e-06!GO:0005762;mitochondrial large ribosomal subunit;1.042640423404e-05!GO:0000315;organellar large ribosomal subunit;1.042640423404e-05!GO:0031252;leading edge;1.15630524296968e-05!GO:0005798;Golgi-associated vesicle;1.15630524296968e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.26489829691263e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.29489528338665e-05!GO:0000245;spliceosome assembly;1.51199992236179e-05!GO:0051170;nuclear import;1.5561500551268e-05!GO:0016564;transcription repressor activity;1.69964161626042e-05!GO:0016859;cis-trans isomerase activity;1.71163361807686e-05!GO:0006613;cotranslational protein targeting to membrane;1.71163361807686e-05!GO:0003713;transcription coactivator activity;1.84195846088796e-05!GO:0000323;lytic vacuole;1.8585916433519e-05!GO:0005764;lysosome;1.8585916433519e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.86034357118434e-05!GO:0043566;structure-specific DNA binding;1.88586648938934e-05!GO:0000151;ubiquitin ligase complex;1.99799595114234e-05!GO:0005694;chromosome;2.0291757768834e-05!GO:0031324;negative regulation of cellular metabolic process;2.4342090374275e-05!GO:0016310;phosphorylation;2.47412790842338e-05!GO:0050657;nucleic acid transport;2.47412790842338e-05!GO:0051236;establishment of RNA localization;2.47412790842338e-05!GO:0050658;RNA transport;2.47412790842338e-05!GO:0006403;RNA localization;2.56645333956835e-05!GO:0006260;DNA replication;2.91195513261217e-05!GO:0046930;pore complex;2.92136634402096e-05!GO:0006606;protein import into nucleus;3.26047490537088e-05!GO:0006793;phosphorus metabolic process;3.48825225735633e-05!GO:0006796;phosphate metabolic process;3.48825225735633e-05!GO:0051789;response to protein stimulus;3.9400413645147e-05!GO:0006986;response to unfolded protein;3.9400413645147e-05!GO:0032561;guanyl ribonucleotide binding;5.04325314940304e-05!GO:0019001;guanyl nucleotide binding;5.04325314940304e-05!GO:0050789;regulation of biological process;5.21836767331677e-05!GO:0016740;transferase activity;5.48245524329254e-05!GO:0030867;rough endoplasmic reticulum membrane;5.70976184725025e-05!GO:0015980;energy derivation by oxidation of organic compounds;6.42921540279088e-05!GO:0003724;RNA helicase activity;7.1872667198471e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.1872667198471e-05!GO:0019843;rRNA binding;7.2484698173234e-05!GO:0016563;transcription activator activity;7.45529773836689e-05!GO:0044427;chromosomal part;7.53313325367593e-05!GO:0019867;outer membrane;7.76502073223974e-05!GO:0031968;organelle outer membrane;8.06248996769496e-05!GO:0005791;rough endoplasmic reticulum;9.2015748596751e-05!GO:0000785;chromatin;9.97732745166564e-05!GO:0043623;cellular protein complex assembly;0.00010463503305248!GO:0005048;signal sequence binding;0.000111150083450142!GO:0005905;coated pit;0.000111679947262014!GO:0016568;chromatin modification;0.000114538870974277!GO:0006334;nucleosome assembly;0.000117775998006636!GO:0033116;ER-Golgi intermediate compartment membrane;0.000144561741747402!GO:0000087;M phase of mitotic cell cycle;0.000149881768092294!GO:0043021;ribonucleoprotein binding;0.000161656371837598!GO:0006612;protein targeting to membrane;0.000195706005435013!GO:0007067;mitosis;0.000204659837739134!GO:0022403;cell cycle phase;0.000209599440009558!GO:0000314;organellar small ribosomal subunit;0.000212719892807302!GO:0005763;mitochondrial small ribosomal subunit;0.000212719892807302!GO:0006414;translational elongation;0.000239284333634424!GO:0009892;negative regulation of metabolic process;0.000246849602595853!GO:0030663;COPI coated vesicle membrane;0.000259511323196013!GO:0030126;COPI vesicle coat;0.000259511323196013!GO:0030133;transport vesicle;0.000266760445816598!GO:0051301;cell division;0.000271324551380836!GO:0008361;regulation of cell size;0.000289347597298102!GO:0005769;early endosome;0.000301662236805294!GO:0031497;chromatin assembly;0.000301721510381921!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000341611944674242!GO:0016779;nucleotidyltransferase activity;0.000342093877449404!GO:0016049;cell growth;0.000352163694085101!GO:0005741;mitochondrial outer membrane;0.000354323489854637!GO:0051028;mRNA transport;0.000360951388026633!GO:0008610;lipid biosynthetic process;0.000365327572229943!GO:0008250;oligosaccharyl transferase complex;0.000387802270180586!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00039394662937714!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000446589274960866!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000452283103556342!GO:0005885;Arp2/3 protein complex;0.000468470614305395!GO:0015630;microtubule cytoskeleton;0.000483737887742352!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000517636809754543!GO:0030137;COPI-coated vesicle;0.000517636809754543!GO:0046474;glycerophospholipid biosynthetic process;0.000529049702744761!GO:0009165;nucleotide biosynthetic process;0.0005429773784905!GO:0004576;oligosaccharyl transferase activity;0.000553697995200523!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000555000843318601!GO:0016481;negative regulation of transcription;0.000591832878374132!GO:0030176;integral to endoplasmic reticulum membrane;0.000593638319881793!GO:0044262;cellular carbohydrate metabolic process;0.000646335246219266!GO:0018196;peptidyl-asparagine modification;0.000688859742580568!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000688859742580568!GO:0043284;biopolymer biosynthetic process;0.000720113424932776!GO:0016126;sterol biosynthetic process;0.000724614824256348!GO:0003899;DNA-directed RNA polymerase activity;0.000766579423551997!GO:0051427;hormone receptor binding;0.000862689899790313!GO:0001558;regulation of cell growth;0.000868771819556673!GO:0006891;intra-Golgi vesicle-mediated transport;0.000873230368251507!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000878736677244245!GO:0051920;peroxiredoxin activity;0.000879482307053601!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000888869074568413!GO:0004177;aminopeptidase activity;0.000939109372486189!GO:0005581;collagen;0.000954043559401526!GO:0006626;protein targeting to mitochondrion;0.00106560202823811!GO:0030036;actin cytoskeleton organization and biogenesis;0.00106743315197113!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00116674874894077!GO:0015399;primary active transmembrane transporter activity;0.00116674874894077!GO:0046467;membrane lipid biosynthetic process;0.0011687752169049!GO:0043681;protein import into mitochondrion;0.0011903178788451!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00124776136976577!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00135136869159323!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00135136869159323!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00135136869159323!GO:0005813;centrosome;0.00138991761863664!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00150434862225272!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00150678356273301!GO:0048522;positive regulation of cellular process;0.00150853588082675!GO:0019752;carboxylic acid metabolic process;0.00152241693575234!GO:0007264;small GTPase mediated signal transduction;0.00153826097058251!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00153826097058251!GO:0035257;nuclear hormone receptor binding;0.00158694270677814!GO:0006082;organic acid metabolic process;0.00160603352531229!GO:0006839;mitochondrial transport;0.00175502401497825!GO:0019899;enzyme binding;0.00186870976280646!GO:0048471;perinuclear region of cytoplasm;0.0019033317144342!GO:0031072;heat shock protein binding;0.00191368518622737!GO:0045045;secretory pathway;0.00203038296644799!GO:0051329;interphase of mitotic cell cycle;0.00219857334055034!GO:0008186;RNA-dependent ATPase activity;0.00229289591167773!GO:0030027;lamellipodium;0.00239410958014962!GO:0048500;signal recognition particle;0.00240026454368561!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00240685056499244!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00243493225568153!GO:0046483;heterocycle metabolic process;0.00243843330379813!GO:0006695;cholesterol biosynthetic process;0.00266022244509838!GO:0006979;response to oxidative stress;0.00274996049244738!GO:0007040;lysosome organization and biogenesis;0.00288115725102029!GO:0042802;identical protein binding;0.00288685803242052!GO:0046489;phosphoinositide biosynthetic process;0.00295497762205672!GO:0003729;mRNA binding;0.00297719871021152!GO:0007243;protein kinase cascade;0.00304666474335338!GO:0030134;ER to Golgi transport vesicle;0.00309696161144887!GO:0043488;regulation of mRNA stability;0.00309696161144887!GO:0043487;regulation of RNA stability;0.00309696161144887!GO:0005815;microtubule organizing center;0.00331042627146548!GO:0016044;membrane organization and biogenesis;0.00332512256166059!GO:0008180;signalosome;0.00338347078557056!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00347989114957441!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00347989114957441!GO:0019222;regulation of metabolic process;0.00351802307430823!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00356302080751861!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00356302080751861!GO:0030132;clathrin coat of coated pit;0.00374195285570996!GO:0051252;regulation of RNA metabolic process;0.00390143905198796!GO:0030659;cytoplasmic vesicle membrane;0.00401102638090775!GO:0015992;proton transport;0.00401372181729792!GO:0016363;nuclear matrix;0.00401372181729792!GO:0016197;endosome transport;0.00401372181729792!GO:0006818;hydrogen transport;0.00404636460397177!GO:0006383;transcription from RNA polymerase III promoter;0.00409918491127308!GO:0008047;enzyme activator activity;0.0041100422505664!GO:0006402;mRNA catabolic process;0.00416052596651358!GO:0003746;translation elongation factor activity;0.00433578484260544!GO:0051168;nuclear export;0.00434423612491533!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00435049414558188!GO:0015002;heme-copper terminal oxidase activity;0.00435049414558188!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00435049414558188!GO:0004129;cytochrome-c oxidase activity;0.00435049414558188!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00447552401383585!GO:0022890;inorganic cation transmembrane transporter activity;0.00448858970231448!GO:0008033;tRNA processing;0.00462793558877561!GO:0030127;COPII vesicle coat;0.00477201668510152!GO:0012507;ER to Golgi transport vesicle membrane;0.00477201668510152!GO:0031902;late endosome membrane;0.00477201668510152!GO:0051087;chaperone binding;0.00477201668510152!GO:0007006;mitochondrial membrane organization and biogenesis;0.00526989616619236!GO:0007050;cell cycle arrest;0.00530656336551461!GO:0000082;G1/S transition of mitotic cell cycle;0.00554766642500367!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00556143448452743!GO:0045047;protein targeting to ER;0.00556143448452743!GO:0048487;beta-tubulin binding;0.00557194190570003!GO:0004004;ATP-dependent RNA helicase activity;0.00570002911669002!GO:0065007;biological regulation;0.0058777213399996!GO:0006740;NADPH regeneration;0.00595068166879423!GO:0006098;pentose-phosphate shunt;0.00595068166879423!GO:0000279;M phase;0.00627232971503807!GO:0006352;transcription initiation;0.00630957114353846!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00643838538798805!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00660920781491308!GO:0007033;vacuole organization and biogenesis;0.00662873057948291!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00667109635617782!GO:0044433;cytoplasmic vesicle part;0.00688218755284633!GO:0051287;NAD binding;0.00699828513883462!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00724997743346383!GO:0003690;double-stranded DNA binding;0.0072814459883999!GO:0016860;intramolecular oxidoreductase activity;0.00759121949412716!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00764445728904783!GO:0030029;actin filament-based process;0.00768970389580276!GO:0030658;transport vesicle membrane;0.00785273545300927!GO:0008312;7S RNA binding;0.00786215002447909!GO:0030145;manganese ion binding;0.00787705385017971!GO:0000096;sulfur amino acid metabolic process;0.00787705385017971!GO:0051325;interphase;0.00799261833710043!GO:0012506;vesicle membrane;0.00858702988783197!GO:0017166;vinculin binding;0.00873372083237921!GO:0030041;actin filament polymerization;0.00884334709245528!GO:0000049;tRNA binding;0.00886331685943284!GO:0007010;cytoskeleton organization and biogenesis;0.00890182596613869!GO:0006520;amino acid metabolic process;0.0089779511446768!GO:0005586;collagen type III;0.00900677709301611!GO:0031543;peptidyl-proline dioxygenase activity;0.00934723406001085!GO:0030880;RNA polymerase complex;0.00934723406001085!GO:0050662;coenzyme binding;0.00934723406001085!GO:0043433;negative regulation of transcription factor activity;0.00941990556600559!GO:0005684;U2-dependent spliceosome;0.00989593476842433!GO:0043492;ATPase activity, coupled to movement of substances;0.0100399392823575!GO:0009112;nucleobase metabolic process;0.0100967219478321!GO:0008139;nuclear localization sequence binding;0.0102047508341495!GO:0019798;procollagen-proline dioxygenase activity;0.0102904502530274!GO:0006650;glycerophospholipid metabolic process;0.0103928040418169!GO:0006595;polyamine metabolic process;0.0104109458831895!GO:0005869;dynactin complex;0.0107071925385738!GO:0001726;ruffle;0.0107417970349494!GO:0016408;C-acyltransferase activity;0.010816384994055!GO:0006778;porphyrin metabolic process;0.0109189135307014!GO:0033013;tetrapyrrole metabolic process;0.0109189135307014!GO:0009967;positive regulation of signal transduction;0.0110161427637919!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0112769849353102!GO:0016251;general RNA polymerase II transcription factor activity;0.0112858728706156!GO:0006401;RNA catabolic process;0.0115454686323411!GO:0030521;androgen receptor signaling pathway;0.0117577377943088!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0118946957969935!GO:0030503;regulation of cell redox homeostasis;0.0119424007221418!GO:0030118;clathrin coat;0.0119806767766173!GO:0006509;membrane protein ectodomain proteolysis;0.0124124927478467!GO:0033619;membrane protein proteolysis;0.0124124927478467!GO:0031418;L-ascorbic acid binding;0.0126016766546124!GO:0006892;post-Golgi vesicle-mediated transport;0.0127678916112544!GO:0005774;vacuolar membrane;0.0130283189380643!GO:0006790;sulfur metabolic process;0.0132334566510238!GO:0043022;ribosome binding;0.0140272593676496!GO:0000059;protein import into nucleus, docking;0.0143898256245017!GO:0005862;muscle thin filament tropomyosin;0.0144600312878644!GO:0005096;GTPase activator activity;0.0144600312878644!GO:0015631;tubulin binding;0.0147531545407819!GO:0032984;macromolecular complex disassembly;0.0150567333739336!GO:0044452;nucleolar part;0.0152130332073275!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0152248287700499!GO:0006643;membrane lipid metabolic process;0.0152756112888245!GO:0000339;RNA cap binding;0.0153697824288231!GO:0006118;electron transport;0.0155443889509324!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0155501385675118!GO:0006984;ER-nuclear signaling pathway;0.0155881134596862!GO:0006497;protein amino acid lipidation;0.0156460548593522!GO:0016272;prefoldin complex;0.0158659509399529!GO:0065009;regulation of a molecular function;0.0159719418973269!GO:0006739;NADP metabolic process;0.0163143191882822!GO:0045792;negative regulation of cell size;0.0172827434174656!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0173926122624659!GO:0051539;4 iron, 4 sulfur cluster binding;0.0175024131938547!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0178937087306408!GO:0000428;DNA-directed RNA polymerase complex;0.0178937087306408!GO:0031625;ubiquitin protein ligase binding;0.0178937087306408!GO:0048037;cofactor binding;0.0179705107975792!GO:0008632;apoptotic program;0.017973372827523!GO:0051101;regulation of DNA binding;0.0180052527987521!GO:0003684;damaged DNA binding;0.0187652877939918!GO:0050811;GABA receptor binding;0.0188027707700782!GO:0006950;response to stress;0.0188371478869385!GO:0003711;transcription elongation regulator activity;0.0189401180652201!GO:0048518;positive regulation of biological process;0.0189702233047452!GO:0005669;transcription factor TFIID complex;0.0189702233047452!GO:0042168;heme metabolic process;0.0190790246196539!GO:0022408;negative regulation of cell-cell adhesion;0.0193124546836543!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0193124546836543!GO:0030660;Golgi-associated vesicle membrane;0.0195909020966279!GO:0043624;cellular protein complex disassembly;0.019805759859057!GO:0030308;negative regulation of cell growth;0.0200630223563323!GO:0007030;Golgi organization and biogenesis;0.0208151780902233!GO:0045893;positive regulation of transcription, DNA-dependent;0.0208357301520002!GO:0022406;membrane docking;0.0211056305124504!GO:0048278;vesicle docking;0.0211056305124504!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0215417699211204!GO:0006672;ceramide metabolic process;0.0216847211170784!GO:0015036;disulfide oxidoreductase activity;0.0217731551062811!GO:0005583;fibrillar collagen;0.0218673609054094!GO:0031901;early endosome membrane;0.0218866737858524!GO:0031529;ruffle organization and biogenesis;0.0219214796773594!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0219214796773594!GO:0030518;steroid hormone receptor signaling pathway;0.0220077883995999!GO:0005832;chaperonin-containing T-complex;0.0220077883995999!GO:0006749;glutathione metabolic process;0.0220476486782815!GO:0003756;protein disulfide isomerase activity;0.0220476486782815!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0220476486782815!GO:0045936;negative regulation of phosphate metabolic process;0.0222854336499803!GO:0016125;sterol metabolic process;0.0224351483795151!GO:0008154;actin polymerization and/or depolymerization;0.0227684749812215!GO:0035035;histone acetyltransferase binding;0.0230382846033913!GO:0007034;vacuolar transport;0.0233969592639903!GO:0035258;steroid hormone receptor binding;0.0241880000510945!GO:0043241;protein complex disassembly;0.0243212596813799!GO:0000209;protein polyubiquitination;0.0244132532072067!GO:0045941;positive regulation of transcription;0.0246730647316093!GO:0006354;RNA elongation;0.0247770783581927!GO:0008652;amino acid biosynthetic process;0.024985326883635!GO:0030032;lamellipodium biogenesis;0.0250880810836019!GO:0040008;regulation of growth;0.0251005858846503!GO:0006779;porphyrin biosynthetic process;0.0251005858846503!GO:0033014;tetrapyrrole biosynthetic process;0.0251005858846503!GO:0046519;sphingoid metabolic process;0.0253195888556844!GO:0006767;water-soluble vitamin metabolic process;0.0257929979615887!GO:0006506;GPI anchor biosynthetic process;0.0259569680904682!GO:0006807;nitrogen compound metabolic process;0.0259817932428942!GO:0045892;negative regulation of transcription, DNA-dependent;0.0263921382627417!GO:0030384;phosphoinositide metabolic process;0.0266812103936271!GO:0005637;nuclear inner membrane;0.0267492793899815!GO:0051128;regulation of cellular component organization and biogenesis;0.0267859722438564!GO:0006007;glucose catabolic process;0.026937454276523!GO:0007021;tubulin folding;0.0273078725386263!GO:0006904;vesicle docking during exocytosis;0.0278848271308587!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0281774036641035!GO:0042158;lipoprotein biosynthetic process;0.0284141867212067!GO:0006769;nicotinamide metabolic process;0.0285251558506507!GO:0033673;negative regulation of kinase activity;0.0285251558506507!GO:0006469;negative regulation of protein kinase activity;0.0285251558506507!GO:0044437;vacuolar part;0.029160003500786!GO:0044255;cellular lipid metabolic process;0.0292702493267825!GO:0051052;regulation of DNA metabolic process;0.0298568465681993!GO:0006733;oxidoreduction coenzyme metabolic process;0.0298615244474132!GO:0006261;DNA-dependent DNA replication;0.0298615244474132!GO:0030508;thiol-disulfide exchange intermediate activity;0.0313215964338778!GO:0005765;lysosomal membrane;0.031770250245116!GO:0044420;extracellular matrix part;0.0317897838449983!GO:0004674;protein serine/threonine kinase activity;0.0320481133059188!GO:0009081;branched chain family amino acid metabolic process;0.0320517645421073!GO:0030833;regulation of actin filament polymerization;0.0320517645421073!GO:0003678;DNA helicase activity;0.0320911192159802!GO:0006720;isoprenoid metabolic process;0.0321323668589522!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0325994751524934!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.033557842298303!GO:0047485;protein N-terminus binding;0.033557842298303!GO:0032940;secretion by cell;0.033557842298303!GO:0006505;GPI anchor metabolic process;0.0339861204151801!GO:0006289;nucleotide-excision repair;0.0343035845608348!GO:0051348;negative regulation of transferase activity;0.0358829071719389!GO:0046426;negative regulation of JAK-STAT cascade;0.0360179422921151!GO:0033559;unsaturated fatty acid metabolic process;0.0362680916296411!GO:0006636;unsaturated fatty acid biosynthetic process;0.0362680916296411!GO:0006376;mRNA splice site selection;0.0366297346444889!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0366297346444889!GO:0008320;protein transmembrane transporter activity;0.0366297346444889!GO:0009308;amine metabolic process;0.0366297346444889!GO:0051098;regulation of binding;0.0367346366916202!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0369096895371716!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0370481357883334!GO:0003923;GPI-anchor transamidase activity;0.0370557567908151!GO:0016255;attachment of GPI anchor to protein;0.0370557567908151!GO:0042765;GPI-anchor transamidase complex;0.0370557567908151!GO:0016971;flavin-linked sulfhydryl oxidase activity;0.0379301796704067!GO:0005801;cis-Golgi network;0.0379360957859873!GO:0005099;Ras GTPase activator activity;0.0387020119078456!GO:0000786;nucleosome;0.0390271082330404!GO:0008538;proteasome activator activity;0.0391980717160847!GO:0030119;AP-type membrane coat adaptor complex;0.0397718301751332!GO:0016584;nucleosome positioning;0.0398867332314021!GO:0031371;ubiquitin conjugating enzyme complex;0.0399259616021011!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0402322608221216!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0402322608221216!GO:0005758;mitochondrial intermembrane space;0.0405996905250318!GO:0001516;prostaglandin biosynthetic process;0.0408637926274144!GO:0046457;prostanoid biosynthetic process;0.0408637926274144!GO:0006338;chromatin remodeling;0.0415796940039962!GO:0050681;androgen receptor binding;0.0416750706152968!GO:0030911;TPR domain binding;0.0417550180388182!GO:0006783;heme biosynthetic process;0.0419929051739975!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0424105124555101!GO:0031124;mRNA 3'-end processing;0.0426084517831195!GO:0001953;negative regulation of cell-matrix adhesion;0.0426084517831195!GO:0006144;purine base metabolic process;0.0426426524800784!GO:0042670;retinal cone cell differentiation;0.0429797082333401!GO:0051281;positive regulation of release of sequestered calcium ion into cytosol;0.0429797082333401!GO:0046549;retinal cone cell development;0.0429797082333401!GO:0008243;plasminogen activator activity;0.0429952759390905!GO:0008147;structural constituent of bone;0.0434366529712065!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0435650694324704!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0436046671102983!GO:0043071;positive regulation of non-apoptotic programmed cell death;0.0437091288691539!GO:0007041;lysosomal transport;0.0440043463885745!GO:0008629;induction of apoptosis by intracellular signals;0.0440043463885745!GO:0030433;ER-associated protein catabolic process;0.0440043463885745!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0440043463885745!GO:0004722;protein serine/threonine phosphatase activity;0.04429267433011!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0457265814545128!GO:0006607;NLS-bearing substrate import into nucleus;0.0458892527091431!GO:0000287;magnesium ion binding;0.0462166010027501!GO:0008234;cysteine-type peptidase activity;0.0462603624546013!GO:0042326;negative regulation of phosphorylation;0.0467497119089827!GO:0007179;transforming growth factor beta receptor signaling pathway;0.04692464517356!GO:0006302;double-strand break repair;0.047023622978753!GO:0050178;phenylpyruvate tautomerase activity;0.0470721398883506!GO:0008287;protein serine/threonine phosphatase complex;0.0472939186179769!GO:0004860;protein kinase inhibitor activity;0.0474965054023312!GO:0031301;integral to organelle membrane;0.0478359031783668!GO:0048468;cell development;0.047887390601314!GO:0051540;metal cluster binding;0.0484879578119665!GO:0051536;iron-sulfur cluster binding;0.0484879578119665!GO:0000075;cell cycle checkpoint;0.04865056078811!GO:0006458;'de novo' protein folding;0.04865056078811!GO:0051084;'de novo' posttranslational protein folding;0.04865056078811!GO:0032981;mitochondrial respiratory chain complex I assembly;0.04865056078811!GO:0010257;NADH dehydrogenase complex assembly;0.04865056078811!GO:0033108;mitochondrial respiratory chain complex assembly;0.04865056078811!GO:0022884;macromolecule transmembrane transporter activity;0.0489031489418976!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0489031489418976!GO:0001952;regulation of cell-matrix adhesion;0.0491820944454664!GO:0022415;viral reproductive process;0.0496182174890996!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0499898131899234
|sample_id=11335
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=prostate
|top_motifs=TAL1_TCF{3,4,12}:2.58033047666;ALX4:2.31844858469;NKX3-1:1.83942716071;UFEwm:1.83517074604;MYBL2:1.81363812252;ESR1:1.69852742954;KLF4:1.40847075638;TEF:1.37949445114;AIRE:1.36478375992;TOPORS:1.25415858824;PAX1,9:1.23478024008;ZNF238:1.14495926916;NFE2L1:1.1395906409;EN1,2:1.10246565383;XBP1:1.09947956046;GZF1:1.08301103293;TFAP4:1.07258533406;NKX2-2,8:1.06152020016;HOX{A4,D4}:1.03815359903;RXR{A,B,G}:1.00167448684;HSF1,2:0.993400793003;LHX3,4:0.978559958621;EVI1:0.968617710298;HMGA1,2:0.947149440176;EBF1:0.944718340457;PATZ1:0.939699334055;GLI1..3:0.91508733092;TEAD1:0.860347908862;ZNF423:0.842881106242;GFI1B:0.826163704395;IKZF1:0.811511590273;NKX6-1,2:0.766109998449;HES1:0.763618185373;SPZ1:0.74861313684;YY1:0.740433530532;CDC5L:0.716247507608;MAFB:0.704307457651;MYFfamily:0.691396184104;NANOG{mouse}:0.685123713616;NFIX:0.666850052584;HOX{A5,B5}:0.633792935258;ATF6:0.628252019298;NR6A1:0.626372643699;ZNF384:0.622594147325;GTF2A1,2:0.619780693344;DBP:0.612842949459;TLX1..3_NFIC{dimer}:0.610034759745;FOXL1:0.581809007559;NFE2L2:0.543472818338;GTF2I:0.535390992074;TBX4,5:0.517066826073;TP53:0.484738368174;NR3C1:0.472436268535;ZBTB6:0.456465470889;PPARG:0.450587290784;STAT5{A,B}:0.447983502147;PRDM1:0.445274691642;CRX:0.444632813287;PAX5:0.432232779636;ZIC1..3:0.421761634186;NR1H4:0.417245882376;bHLH_family:0.379204408747;TFCP2:0.369912209434;RXRA_VDR{dimer}:0.365592243366;TFAP2{A,C}:0.36182556607;HOXA9_MEIS1:0.333276273881;MZF1:0.311730838329;HLF:0.304573499682;MAZ:0.298191573448;FOXO1,3,4:0.296452247605;SRF:0.294030199635;GATA4:0.290730813594;HMX1:0.272545728933;PAX4:0.257985453822;ELK1,4_GABP{A,B1}:0.247427808288;MTE{core}:0.244230209198;NFATC1..3:0.21070968094;EGR1..3:0.207906355819;TBP:0.1902801934;CEBPA,B_DDIT3:0.188866770319;HAND1,2:0.173157909125;HIC1:0.170650476183;NHLH1,2:0.169758365929;NR5A1,2:0.157976933856;RREB1:0.0993290650648;MTF1:0.0647089329435;TFAP2B:0.0632534618022;CDX1,2,4:0.0503087951243;FOXQ1:0.0442070741659;FOX{I1,J2}:0.0305514924133;STAT2,4,6:0.0295748333907;SOX17:0.029518275306;PITX1..3:0.0235865465768;FOXD3:0.00794990449228;HNF1A:-0.00951355011313;HNF4A_NR2F1,2:-0.01116146078;XCPE1{core}:-0.0156849974501;ZNF143:-0.0491973869151;NRF1:-0.0703185504146;FOXP3:-0.0741108375139;ZBTB16:-0.102473142092;FOXP1:-0.116387074737;PBX1:-0.126879523218;RFX1:-0.147291529566;AHR_ARNT_ARNT2:-0.14934454225;MYB:-0.150261417152;ESRRA:-0.154030938906;TLX2:-0.168565587186;ONECUT1,2:-0.173818969667;PAX6:-0.182391433992;T:-0.182399025855;POU3F1..4:-0.185866222904;NKX3-2:-0.189027780591;REST:-0.197754518627;IRF1,2:-0.202129026289;BACH2:-0.203727055968;DMAP1_NCOR{1,2}_SMARC:-0.210316782083;HIF1A:-0.211719002782;PAX8:-0.226371996884;LMO2:-0.23857820094;NFE2:-0.239340292937;STAT1,3:-0.243570063945;MED-1{core}:-0.247087253555;ZNF148:-0.247394443742;RFX2..5_RFXANK_RFXAP:-0.286123703634;SOX5:-0.341563307172;IRF7:-0.34660054522;HOX{A6,A7,B6,B7}:-0.347542106079;SREBF1,2:-0.37395457512;SMAD1..7,9:-0.376662103599;ZFP161:-0.376918169249;FOS_FOS{B,L1}_JUN{B,D}:-0.3812406382;FOX{D1,D2}:-0.38920754225;CREB1:-0.39018628956;GCM1,2:-0.390342131862;POU6F1:-0.398946582261;FOXM1:-0.404378082442;NFKB1_REL_RELA:-0.41481052921;GFI1:-0.419531695169;ATF2:-0.423009516418;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.436019400335;POU5F1:-0.443764308903;ARID5B:-0.444196651004;SP1:-0.473408571121;RUNX1..3:-0.493287431014;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.518734575674;FOSL2:-0.522159664961;AR:-0.532259594569;E2F1..5:-0.544133803866;NFY{A,B,C}:-0.548439496768;TFDP1:-0.567825758245;ELF1,2,4:-0.574854710223;SPI1:-0.592170973424;PRRX1,2:-0.603014161662;ATF4:-0.617950581465;ATF5_CREB3:-0.620400547709;BPTF:-0.626741242917;CUX2:-0.635248157174;SPIB:-0.639263696575;LEF1_TCF7_TCF7L1,2:-0.642608511856;PAX3,7:-0.675768863168;ETS1,2:-0.703633316735;NKX2-3_NKX2-5:-0.704937162621;POU1F1:-0.709994238955;JUN:-0.711911940221;PAX2:-0.730572064674;TGIF1:-0.741366916386;SOX2:-0.775087597847;FOXA2:-0.785600373501;PDX1:-0.793927095963;SNAI1..3:-0.799793980817;FOX{F1,F2,J1}:-0.800024943082;ADNP_IRX_SIX_ZHX:-0.830068020351;GATA6:-0.839674455445;VSX1,2:-0.85629317266;NFIL3:-0.858182645821;ALX1:-0.8582121865;MEF2{A,B,C,D}:-0.870422168456;FOXN1:-0.879810110812;MYOD1:-0.906227683799;SOX{8,9,10}:-0.944119081566;IKZF2:-0.959146650738;ZEB1:-0.967927412369;BREu{core}:-0.987383293665;OCT4_SOX2{dimer}:-0.991015777718;NKX2-1,4:-1.08440639007;EP300:-1.12095861382;POU2F1..3:-1.3519623;RBPJ:-1.41283354908;RORA:-1.4386252608;NANOG:-1.67129160921;HBP1_HMGB_SSRP1_UBTF:-2.01044005743
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11335-117F3;search_select_hide=table117:FF:11335-117F3
}}
}}

Latest revision as of 17:53, 4 June 2020

Name:Smooth Muscle Cells - Prostate, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11976
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueprostate
dev stage34 years old adult
sexmale
age34
cell typesmooth muscle cell
cell lineNA
companyLonza
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005488
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11976 CAGE DRX008496 DRR009368
Accession ID Hg19

Library idBAMCTSS
CNhs11976 DRZ000793 DRZ002178
Accession ID Hg38

Library idBAMCTSS
CNhs11976 DRZ012143 DRZ013528
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005488
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10014.GAGTGG sRNA-Seq DRX037245 DRR041611
Accession ID Hg19

Library idBAMCTSS
SRhi10014.GAGTGG DRZ007253


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.162
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.137
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.329
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0105
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.15
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.199
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0378
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.65
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0666
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.243
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0535
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.138
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.785
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.299
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.021
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.17
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.195
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.195
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0574
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.809
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.785
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.267
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.795
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0574
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.357
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11976

Jaspar motifP-value
MA0002.20.0442
MA0003.10.583
MA0004.10.0655
MA0006.10.129
MA0007.10.948
MA0009.10.449
MA0014.10.103
MA0017.10.423
MA0018.24.17417e-5
MA0019.10.163
MA0024.10.00865
MA0025.19.43535e-4
MA0027.10.802
MA0028.10.719
MA0029.10.515
MA0030.10.0748
MA0031.10.0626
MA0035.20.26
MA0038.10.0371
MA0039.20.00311
MA0040.10.528
MA0041.10.517
MA0042.10.602
MA0043.10.00817
MA0046.10.0641
MA0047.20.136
MA0048.10.164
MA0050.10.0936
MA0051.10.0534
MA0052.14.03618e-5
MA0055.10.673
MA0057.10.439
MA0058.10.0161
MA0059.10.78
MA0060.16.00621e-7
MA0061.10.109
MA0062.20.00155
MA0065.20.541
MA0066.10.614
MA0067.10.00641
MA0068.10.55
MA0069.10.119
MA0070.10.98
MA0071.10.568
MA0072.10.203
MA0073.10.973
MA0074.10.0368
MA0076.10.272
MA0077.10.673
MA0078.10.679
MA0079.20.64
MA0080.26.94865e-9
MA0081.10.00799
MA0083.10.686
MA0084.10.239
MA0087.10.923
MA0088.10.266
MA0090.10.0796
MA0091.13.43923e-4
MA0092.10.722
MA0093.10.0588
MA0099.21.93996e-8
MA0100.10.0712
MA0101.10.00232
MA0102.20.468
MA0103.10.0177
MA0104.20.0426
MA0105.10.747
MA0106.10.117
MA0107.10.00249
MA0108.20.355
MA0111.10.702
MA0112.20.0201
MA0113.10.941
MA0114.10.827
MA0115.10.212
MA0116.10.094
MA0117.10.549
MA0119.10.25
MA0122.10.158
MA0124.10.0737
MA0125.10.293
MA0131.10.717
MA0135.10.0303
MA0136.12.57107e-12
MA0137.20.766
MA0138.20.88
MA0139.10.606
MA0140.10.255
MA0141.10.646
MA0142.10.0301
MA0143.10.762
MA0144.10.646
MA0145.10.522
MA0146.10.0875
MA0147.10.144
MA0148.10.274
MA0149.10.617
MA0150.10.0309
MA0152.10.434
MA0153.10.797
MA0154.10.65
MA0155.10.165
MA0156.12.46623e-9
MA0157.10.0813
MA0159.10.966
MA0160.10.243
MA0162.10.217
MA0163.15.47243e-4
MA0164.10.434
MA0258.10.224
MA0259.10.298



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11976

Novel motifP-value
10.654
100.52
1000.0671
1010.482
1020.287
1030.696
1040.876
1050.0187
1060.698
1070.39
1080.4
1090.556
110.431
1100.384
1110.712
1120.402
1130.0293
1140.483
1150.00116
1160.0214
1170.517
1180.837
1190.393
120.187
1200.206
1210.0666
1220.00341
1230.319
1240.271
1250.247
1260.738
1270.177
1280.185
1290.112
130.965
1300.917
1310.322
1320.378
1330.809
1340.891
1350.943
1360.0925
1370.0638
1380.939
1390.0881
140.171
1400.998
1410.598
1420.957
1430.884
1440.182
1450.31
1460.482
1470.583
1480.672
1490.0116
150.239
1500.287
1510.558
1520.0185
1530.382
1540.985
1550.0836
1560.319
1570.184
1580.0125
1590.577
160.0376
1600.929
1610.671
1620.47
1630.729
1640.00584
1650.729
1660.112
1670.744
1680.544
1690.0257
170.942
180.318
190.00648
20.328
200.635
210.134
220.278
230.919
240.346
250.0561
260.296
270.887
280.0914
290.306
30.516
300.939
310.738
324.51469e-18
330.657
340.881
350.402
360.0506
370.0385
380.193
390.519
40.118
400.235
410.0901
420.57
430.936
440.109
450.384
460.509
470.606
480.89
490.359
50.588
500.794
510.666
520.94
530.312
540.701
550.624
560.94
570.932
580.228
590.169
60.594
600.657
610.664
620.617
630.522
640.68
650.998
660.2
670.757
680.818
690.997
70.0755
700.942
710.173
720.517
730.00413
740.0785
750.373
760.823
770.244
780.208
790.00235
80.123
800.0131
810.879
820.383
830.255
840.75
850.416
860.215
870.0821
880.608
890.2
90.956
900.597
910.634
920.392
930.314
940.732
950.1
960.37
970.84
980.381
990.00175



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11976


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0000393 (electrically responsive cell)
0000183 (contractile cell)
0000187 (muscle cell)
0000192 (smooth muscle cell)
0000211 (electrically active cell)
0000255 (eukaryotic cell)
1000487 (smooth muscle cell of prostate)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000167 (smooth muscle cell sample)
0000183 (human smooth muscle cell of prostate sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000514 (smooth muscle myoblast)

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