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{{f5samples
{{f5samples
|id=FF:10609-108F6
|DRA_sample_Accession=CAGE@SAMD00004998
|name=small-cell gastrointestinal carcinoma cell line:ECC4
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004998
|sample_id=10609
|accession_numbers=CAGE;DRX008010;DRR008882;DRZ000307;DRZ001692;DRZ011657;DRZ013042
|rna_tube_id=108F6
|accession_numbers_RNASeq=RNA-Seq;DRX057133;DRR062892;DRZ007968
|rna_box=108
|rna_position=F6
|sample_cell_lot=
|sample_cell_catalog=RCB0982
|sample_company=RIKEN Bioresource centre
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=intestine
|sample_donor(cell lot)=
|sample_sex=male
|sample_age=45
|sample_ethnicity=J
|rna_rin=
|rna_od260/230=1.96
|rna_od260/280=2.04
|sample_cell_type=unclassifiable
|sample_cell_line=ECC4
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=small-cell gastrointestinal carcinoma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=19.20843
|rna_concentration=0.40869
|sample_note=
|profile_hcage=CNhs11734,LSID819,release009,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_disease_facet=DOID:0050686,DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:3119,DOID:4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|sample_description=
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:3119
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0101533
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr12:103351444..103351461,+!p1@ASCL1!2.94!875.73!ASCL1;;chr20:20348740..20348757,+!p1@INSM1!2.29!196.12!INSM1;;chr8:53166899..53166914,-!p3@ST18!2.18!150.50!ST18;;chr1:27240455..27240474,-!p1@NR0B2!2.17!148.15!NR0B2;;chr7:27205136..27205164,-!p1@HOXA9!2.14!137.33!HOXA9;;chr1:201979743..201979762,+!p1@ELF3!2.12!132.16!ELF3;;chr7:27192185..27192209,-!p1@HOXA3!2.08!118.52!HOXA3;;chr3:181429704..181429722,+!p1@SOX2!2.05!110.05!SOX2;;chr2:166326200..166326216,+!p1@CSRNP3!2.00!142.04!CSRNP3;;chr1:201979703..201979721,+!p2@ELF3!1.99!97.83!ELF3;;chr1:214161272..214161322,+!p1@PROX1!1.97!127.46!PROX1;;chr7:27224842..27224872,-!p1@HOXA11!1.92!81.36!HOXA11;;chr15:57511609..57511651,+!p2@TCF12!1.91!131.22!TCF12;;chr7:27224795..27224840,-!p2@HOXA11!1.88!75.25!HOXA11;;chr12:103352277..103352324,+!p2@ASCL1!1.81!63.96!ASCL1;;chr2:176973498..176973524,+!p1@HOXD10!1.81!63.02!HOXD10;;chr7:156803329..156803362,-!p1@MNX1!1.81!63.02!MNX1;;chr8:53162037..53162058,-!p5@ST18!1.81!63.02!ST18;;chr7:27213893..27213954,-!p1@HOXA10!1.80!61.61!HOXA10;;chr20:22564895..22564910,-!p1@FOXA2!1.79!61.14!FOXA2;;chr2:45236540..45236577,-!p1@SIX2!1.73!53.15!SIX2;;chr17:46667594..46667619,-!p1@HOXB3!1.71!50.79!HOXB3;;chr7:27205106..27205134,-!p2@HOXA9!1.67!46.09!HOXA9;;chr18:55102628..55102646,+!p2@ONECUT2!1.63!41.86!ONECUT2;;chr18:55102598..55102623,+!p1@ONECUT2!1.62!40.45!ONECUT2;;chr14:38064429..38064486,-!p1@FOXA1!1.61!39.98!FOXA1;;chr2:239148671..239148686,-!p1@HES6!1.59!133.57!HES6;;chr11:34642612..34642646,+!p1@EHF!1.59!38.10!EHF;;chr2:177001290..177001315,+!p1@HOXD3!1.56!35.27!HOXD3;;chr10:135122906..135122921,+!p4@ZNF511!1.53!32.92!ZNF511;;chr20:22565370..22565388,-!p2@FOXA2!1.53!32.92!FOXA2;;chr3:181429741..181429767,+!p2@SOX2!1.51!31.51!SOX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.51!31.04!HOXC5;;chr7:27196217..27196246,-!p2@HOXA7!1.47!28.22!HOXA7;;chr12:24103844..24103880,-!p3@SOX5!1.44!26.81!SOX5;;chr17:46682321..46682362,-!p1@HOXB6!1.41!24.93!HOXB6;;chr17:46692457..46692484,-!p2@HOXB8!1.41!24.93!HOXB8;;chr17:74137321..74137337,-!p1@FOXJ1!1.41!24.93!FOXJ1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.41!24.46!TFCP2L1;;chr12:24102576..24102623,-!p2@SOX5!1.39!23.52!SOX5;;chr7:97840743..97840786,+!p1@BHLHA15!1.38!23.05!BHLHA15;;chr18:45935720..45935772,-!p1@ZBTB7C!1.36!22.10!ZBTB7C;;chr12:103351813..103351844,+!p4@ASCL1!1.35!21.16!ASCL1;;chr1:214161358..214161377,+!p3@PROX1!1.32!19.75!PROX1;;chr1:214161328..214161348,+!p2@PROX1!1.30!18.81!PROX1;;chr2:176981499..176981522,+!p2@HOXD10!1.30!18.81!HOXD10;;chr7:14026022..14026044,-!p7@ETV1!1.30!18.81!ETV1;;chr7:27213872..27213886,-!p4@HOXA10!1.30!18.81!HOXA10;;chr7:14028743..14028799,-!p3@ETV1!1.29!23.05!ETV1;;chr7:26191809..26191890,+!p1@NFE2L3!1.28!88.42!NFE2L3;;chr11:34645791..34645836,+!p3@EHF!1.28!17.87!EHF;;chr8:60031619..60031676,-!p1@TOX!1.27!37.63!TOX;;chr8:53166916..53166925,-!p10@ST18!1.25!16.93!ST18;;chr16:79634595..79634620,-!p2@MAF!1.22!28.22!MAF;;chr10:135122868..135122893,+!p3@ZNF511!1.22!15.52!ZNF511;;chr2:177053386..177053402,+!p1@HOXD1!1.22!15.52!HOXD1;;chr12:103351694..103351704,+!p6@ASCL1!1.21!15.05!ASCL1;;chr12:103352326..103352351,+!p3@ASCL1!1.19!14.58!ASCL1;;chr20:22565185..22565223,-!p3@FOXA2!1.19!14.58!FOXA2;;chr19:24097675..24097699,+!p1@ZNF726!1.15!43.27!ZNF726;;chr10:48355030..48355090,+!p1@ZNF488!1.15!16.93!ZNF488;;chr6:21593973..21593988,+!p1@SOX4!1.14!456.21!SOX4;;chr1:209979467..209979494,-!p1@IRF6!1.12!13.64!IRF6;;chr8:53162019..53162028,-!p12@ST18!1.12!12.23!ST18;;chr17:46675558..46675577,-!p2@HOXB6!1.12!12.23!HOXB6;;chr1:10754477..10754517,-!p1@CASZ1!1.11!19.75!CASZ1;;chr19:49139477..49139552,-!p4@DBP!1.11!15.05!DBP;;chr8:60031682..60031710,-!p2@TOX!1.10!18.81!TOX;;chr20:51588873..51588953,+!p1@TSHZ2!1.10!15.52!TSHZ2;;chr16:79634624..79634642,-!p1@MAF!1.09!45.15!MAF;;chr19:21512115..21512135,-!p3@ZNF708!1.09!23.05!ZNF708;;chr17:46671108..46671147,-!p1@HOXB5!1.09!11.29!HOXB5;;chr2:71127699..71127744,+!p1@VAX2!1.08!23.05!VAX2;;chr20:50159198..50159299,-!p1@NFATC2!1.08!15.99!NFATC2;;chr6:21597765..21597779,+!p2@SOX4!1.07!87.48!SOX4;;chr19:33865009..33865090,+!p3@CEBPG!1.07!14.58!CEBPG;;chr1:27240361..27240377,-!p2@NR0B2!1.07!10.82!NR0B2;;chr2:45236579..45236596,-!p2@SIX2!1.07!10.82!SIX2;;chr1:204042233..204042249,+!p1@SOX13!1.05!64.90!SOX13;;chr1:41827095..41827155,+!p1@FOXO6!1.05!14.11!FOXO6;;chr20:62795834..62795878,+!p2@MYT1!1.05!10.35!MYT1;;chr8:80679993..80680011,-!p1@HEY1!1.04!14.58!HEY1;;chr8:53161967..53161974,-!p11@ST18!1.04!9.88!ST18;;chr2:176994408..176994492,+!p1@HOXD8!1.04!9.88!HOXD8;;chr19:24216213..24216314,+!p1@ZNF254!1.03!172.61!ZNF254;;chr7:64838786..64838809,+!p2@ZNF92!1.03!56.44!ZNF92;;chr13:73633131..73633149,+!p1@KLF5!1.02!102.53!KLF5;;chr16:79633894..79633954,-!p3@MAF!1.02!18.34!MAF;;chr9:110250697..110250738,-!p2@KLF4!1.02!11.29!KLF4;;chr8:93107451..93107468,-!p2@RUNX1T1!1.02!9.41!RUNX1T1;;chr17:46690839..46690884,-!p1@HOXB8!1.02!9.41!HOXB8;;chr3:18480217..18480239,-!p3@SATB1!1.02!9.41!SATB1;;chr20:32274179..32274213,-!p1@E2F1!1.01!63.02!E2F1;;chr19:22034809..22034878,-!p2@ZNF43!1.01!33.39!ZNF43;;chr7:64023410..64023428,-!p2@ZNF680!1.01!14.58!ZNF680;;chr6:135502501..135502546,+!p1@MYB!1.00!10.82!MYB;;chr17:46667561..46667572,-!p4@HOXB3!1.00!8.94!HOXB3;;chr20:62795799..62795819,+!p1@MYT1!1.00!8.94!MYT1;;chr2:157189180..157189290,-!p1@NR4A2!0.99!47.03!NR4A2;;chr9:3525727..3525828,-!p2@RFX3!0.99!23.05!RFX3;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.98!18.81!ZNF395;;chr19:24097706..24097731,+!p2@ZNF726!0.98!16.46!ZNF726;;chr7:15726296..15726315,-!p1@MEOX2!0.98!8.47!MEOX2;;chr2:176969228..176969260,+!p1@HOXD11!0.98!8.47!HOXD11;;chr21:47063625..47063658,+!p1@PCBP3!0.97!37.63!PCBP3;;chr19:23941647..23941672,-!p2@ZNF681!0.97!14.11!ZNF681;;chr9:3525867..3525902,-!p3@RFX3!0.95!28.22!RFX3;;chr7:86782094..86782108,+!p5@DMTF1!0.95!13.17!DMTF1;;chr3:18486354..18486377,-!p2@SATB1!0.95!9.88!SATB1;;chr7:15726243..15726293,-!p2@MEOX2!0.95!8.00!MEOX2;;chr7:96654133..96654150,-!p1@DLX5!0.95!8.00!DLX5;;chr8:60031762..60031803,-!p3@TOX!0.94!11.29!TOX;;chr19:24269981..24270007,+!p2@ZNF254!0.93!49.85!ZNF254;;chr1:23857325..23857416,-!p2@E2F2!0.93!8.94!E2F2;;chr7:99680193..99680204,-!p2@ZNF3!0.93!7.53!ZNF3;;chr2:176994919..176994931,+!p2@HOXD8!0.93!7.53!HOXD8;;chr18:55102806..55102847,+!p3@ONECUT2!0.93!7.53!ONECUT2;;chr12:133707204..133707236,+!p1@ZNF10,p2@ZNF268!0.92!43.27!ZNF10;;chr8:60031809..60031835,-!p4@TOX!0.92!9.41!TOX;;chr9:110252035..110252057,-!p1@KLF4!0.91!118.05!KLF4;;chr10:77161533..77161546,-!p2@ZNF503!0.91!29.63!ZNF503;;chr20:32274150..32274166,-!p2@E2F1!0.91!13.64!E2F1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.91!7.05!HOXC5;;chr14:37051798..37051831,-!p1@NKX2-8!0.91!7.05!NKX2-8;;chr15:68115672..68115691,+!p1@SKOR1!0.91!7.05!SKOR1;;chr2:176972000..176972025,+!p4@HOXD11!0.91!7.05!HOXD11;;chr2:176987441..176987454,+!p1@HOXD9!0.91!7.05!HOXD9;;chr19:23869970..23869991,-!p1@ZNF675!0.90!27.28!ZNF675;;chr19:52391220..52391251,-!p2@ZNF577!0.90!9.88!ZNF577;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.89!21.16!ZNF321P;;chr7:1570388..1570418,+!p2@MAFK!0.89!15.05!MAFK;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.35!ETV4;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!36.21!CREB3L1;;chr1:8763440..8763460,-!p2@RERE!0.88!34.80!RERE;;chr19:9473676..9473712,+!p2@ZNF177,p2@ZNF559-ZNF177!0.88!6.58!ZNF177;;chr17:46667628..46667642,-!p2@HOXB3!0.88!6.58!HOXB3;;chr7:14026063..14026091,-!p10@ETV1!0.88!6.58!ETV1;;chr2:85981969..85982019,+!p6@ATOH8!0.88!6.58!ATOH8;;chr19:45971246..45971265,+!p1@FOSB!0.87!127.46!FOSB;;chr7:14028488..14028516,-!p2@ETV1!0.87!7.05!ETV1;;chr9:114287433..114287513,+!p1@ZNF483!0.86!16.93!ZNF483;;chr7:21467802..21467840,+!p3@SP4!0.85!13.17!SP4;;chr7:27196196..27196210,-!p5@HOXA7!0.85!6.11!HOXA7;;chr19:9546177..9546224,-!p1@ZNF266!0.84!44.68!ZNF266;;chr22:38597987..38598021,+!p2@MAFF!0.84!38.57!MAFF;;chr19:20748574..20748599,-!p1@ZNF737!0.84!38.10!ZNF737;;chr19:20959098..20959117,+!p1@ZNF66P!0.84!25.87!ZNF66P;;chr10:77161650..77161661,-!p4@ZNF503!0.84!8.47!ZNF503;;chr17:41623259..41623278,-!p7@ETV4!0.84!7.05!ETV4;;chr19:9420483..9420530,-!p@chr19:9420483..9420530,-!0.83!11.76!ZNF699;;chr15:96875657..96875760,+!p14@NR2F2!0.83!9.88!NR2F2;;chr9:110252074..110252079,-!p3@KLF4!0.83!9.88!KLF4;;chr15:71184890..71184909,-!p3@THAP10!0.83!7.53!THAP10;;chr1:114301755..114301796,-!p3@PHTF1!0.83!6.58!PHTF1;;chr6:20402102..20402152,+!p1@E2F3!0.82!24.46!E2F3;;chr19:23941680..23941704,-!p1@ZNF681!0.82!17.40!ZNF681;;chr9:116638634..116638664,+!p2@ZNF618!0.82!11.29!ZNF618;;chr5:2751762..2751784,-!p1@IRX2!0.82!5.64!IRX2;;chr8:76319876..76319926,+!p1@HNF4G!0.82!5.64!HNF4G;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.82!5.64!MEF2B;;chr2:176987463..176987479,+!p2@HOXD9!0.82!5.64!HOXD9;;chr4:149363494..149363543,-!p1@NR3C2!0.82!5.64!NR3C2;;chr1:10856694..10856715,-!p3@CASZ1!0.82!5.64!CASZ1;;chr1:214161619..214161629,+!p5@PROX1!0.82!5.64!PROX1;;chr1:3569072..3569093,+!p1@TP73!0.82!5.64!TP73;;chr19:19976683..19976709,+!p1@ZNF253!0.81!25.87!ZNF253;;chr9:116638565..116638606,+!p1@ZNF618!0.81!24.93!ZNF618;;chr3:32023232..32023273,+!p1@ZNF860!0.81!8.00!ZNF860;;chr15:61521417..61521460,-!p2@RORA!0.80!12.70!RORA;;chr19:37997812..37997866,+!p1@ZNF793!0.80!9.41!ZNF793;;chr19:21512144..21512191,-!p2@ZNF708!0.79!26.34!ZNF708;;chr7:86781916..86781963,+!p2@DMTF1!0.79!23.99!DMTF1;;chr7:138666053..138666146,-!p1@KIAA1549!0.79!23.05!KIAA1549;;chr10:35484053..35484076,+!p1@CREM!0.79!13.64!CREM;;chr17:46675420..46675465,-!p3@HOXB6!0.79!6.11!HOXB6;;chr15:61521462..61521482,-!p4@RORA!0.79!5.17!RORA;;chr15:61521495..61521506,-!p5@RORA!0.79!5.17!RORA;;chr7:27239740..27239759,-!p2@HOXA13!0.79!5.17!HOXA13;;chr8:93107696..93107716,-!p8@RUNX1T1!0.79!5.17!RUNX1T1;;chr1:214161428..214161437,+!p6@PROX1!0.79!5.17!PROX1;;chr2:200320768..200320800,-!p4@SATB2!0.79!5.17!SATB2;;chr13:79177703..79177729,-!p2@POU4F1!0.79!5.17!POU4F1;;chrX:129244454..129244488,-!p1@ELF4!0.78!39.98!ELF4;;chr3:141087393..141087426,+!p3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F442;;chr1:151032922..151032951,+!p2@MLLT11!0.32!2.35!MLLT11;;chr11:113930291..113930339,+!p2@ZBTB16!0.32!2.35!ZBTB16;;chr7:99613195..99613206,+!p4@ZKSCAN1!0.32!2.35!ZKSCAN1;;chr9:4299979..4299996,-!p3@GLIS3!0.32!2.35!GLIS3;;chr10:98592776..98592796,+!p4@LCOR!0.32!1.88!LCOR;;chr16:88636875..88636886,+!p3@ZC3H18!0.32!1.88!ZC3H18;;chr19:58874112..58874125,-!p1@ZNF497,p5@A1BG!0.32!1.88!ZNF497;;chr1:42800614..42800649,-!p5@FOXJ3!0.32!1.88!FOXJ3;;chr1:114258267..114258270,-!p5@PHTF1!0.32!1.41!PHTF1;;chr17:41623075..41623101,-!p9@ETV4!0.32!1.41!ETV4;;chr19:24269971..24269980,+!p6@ZNF254!0.32!1.41!ZNF254;;chr11:85375237..85375277,-!p4@CREBZF!0.32!1.41!CREBZF;;chr6:44355325..44355340,+!p4@CDC5L!0.32!1.41!CDC5L;;chr2:46524865..46524870,+!p9@EPAS1!0.32!1.41!EPAS1;;chr3:18466660..18466676,-!p5@SATB1!0.32!1.41!SATB1;;chr5:131826457..131826514,-!p1@IRF1!0.31!72.43!IRF1;;chr11:12695944..12695989,+!p1@TEAD1!0.31!65.37!TEAD1;;chr16:67867749..67867852,-!p1@CENPT!0.31!42.33!CENPT;;chr16:67063036..67063088,+!p1@CBFB!0.31!29.16!CBFB;;chr16:30406721..30406820,+!p1@ZNF48!0.31!9.41!ZNF48;;chr19:56652643..56652683,+!p1@ZNF444!0.31!9.41!ZNF444;;chr19:53836985..53837024,+!p1@ZNF845!0.31!8.47!ZNF845;;chr18:72922811..72922827,+!p1@TSHZ1!0.31!8.47!TSHZ1;;chr19:15543565..15543579,-!p2@WIZ!0.31!7.53!WIZ;;chr19:58962974..58963001,+!p1@ZNF324B!0.31!7.53!ZNF324B;;chr7:21467674..21467727,+!p1@SP4!0.31!6.58!SP4;;chr19:44598498..44598529,+!p1@ZNF224!0.31!5.17!ZNF224;;chr16:1429627..1429662,-!p2@UNKL!0.31!4.70!UNKL;;chr7:99647411..99647433,+!p2@ZSCAN21!0.31!4.23!ZSCAN21;;chr1:226595726..226595737,-!p2@PARP1!0.31!3.76!PARP1;;chr19:58892390..58892404,-!p1@ZNF837!0.31!2.82!ZNF837;;chr12:53574338..53574358,+!p2@ZNF740!0.31!2.82!ZNF740;;chr12:57400227..57400245,-!p2@ZBTB39!0.31!2.82!ZBTB39;;chr16:89787973..89788001,+!p3@ZNF276!0.31!2.82!ZNF276;;chr16:67063142..67063153,+!p4@CBFB!0.31!1.88!CBFB;;chrX:131623932..131623964,-!p7@MBNL3!0.31!1.88!MBNL3;;chr6:168227611..168227624,+!p2@MLLT4!0.31!1.88!MLLT4;;chr12:11802575..11802592,+!p6@ETV6!0.31!1.88!ETV6;;chr12:49445907..49445923,-!p2@MLL2!0.31!1.88!MLL2;;chr14:24020938..24020988,-!p1@ZFHX2!0.31!1.88!ZFHX2;;chr11:130184623..130184634,-!p6@ZBTB44!0.31!1.41!ZBTB44;;chr12:133614119..133614136,+!p5@ZNF84!0.31!1.41!ZNF84;;chr12:27485889..27485900,+!p4@ARNTL2!0.31!1.41!ARNTL2;;chr8:128752850..128752874,+!p12@MYC!0.31!1.41!MYC;;chr8:71316403..71316427,-!p6@NCOA2!0.31!1.41!NCOA2;;chr22:39916289..39916302,+!p3@ATF4!0.31!1.41!ATF4;;chrX:47509928..47509990,-!p1@ELK1!0.30!55.50!ELK1;;chr6:33168427..33168457,-!p1@RXRB!0.30!39.98!RXRB;;chr2:70314849..70314860,+!p3@PCBP1!0.30!26.34!PCBP1;;chr20:62601243..62601291,-!p1@ZNF512B!0.30!17.40!ZNF512B;;chr2:231191875..231191918,+!p1@SP140L!0.30!16.93!SP140L;;chr19:42724436..42724507,+!p1@ZNF526!0.30!14.58!ZNF526;;chr16:4322832..4322907,-!p1@TFAP4!0.30!13.17!TFAP4;;chr12:6798616..6798684,-!p2@ZNF384!0.30!11.76!ZNF384;;chr19:57988878..57988941,-!p1@ZNF772!0.30!9.41!ZNF772;;chr19:58258202..58258226,+!p3@ZNF776!0.30!8.00!ZNF776;;chr6:44355257..44355315,+!p2@CDC5L!0.30!7.53!CDC5L;;chr19:58838369..58838439,+!p1@ZSCAN22!0.30!5.17!ZSCAN22;;chr18:72922743..72922761,+!p3@TSHZ1!0.30!5.17!TSHZ1;;chr19:37862054..37862110,+!p1@ZNF527!0.30!4.23!ZNF527;;chr3:44754126..44754171,+!p1@ZNF502!0.30!3.76!ZNF502;;chr19:52408227..52408243,-!p2@ZNF649!0.30!3.29!ZNF649;;chr1:151032833..151032850,+!p3@MLLT11!0.30!3.29!MLLT11;;chr11:615570..615721,-!p2@IRF7!0.30!2.82!IRF7;;chr14:64970427..64970457,+!p3@ZBTB1!0.30!2.82!ZBTB1;;chr19:37406934..37406949,-!p1@ZNF829!0.30!2.35!ZNF829;;chr19:11616645..11616663,-!p1@ZNF653!0.30!1.88!ZNF653;;chr19:35417844..35417877,+!p2@ZNF30!0.30!1.88!ZNF30;;chr12:53848549..53848582,+!p9@PCBP2!0.30!1.88!PCBP2;;chr14:64970593..64970627,+!p5@ZBTB1!0.30!1.88!ZBTB1;;chr9:88969226..88969237,-!p4@ZCCHC6!0.30!1.88!ZCCHC6;;chrX:129244499..129244506,-!p7@ELF4!0.30!1.41!ELF4;;chr17:41622834..41622883,-!p6@ETV4!0.30!1.41!ETV4;;
|fonse_cell_line=FF:0101120,FF:0101533
|fonse_cell_line=FF:0101120,FF:0101533
|fonse_cell_line_closure=FF:0101120,FF:0101533
|fonse_cell_line_closure=FF:0101120,FF:0101533
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/small-cell%2520gastrointestinal%2520carcinoma%2520cell%2520line%253aECC4.CNhs11734.10609-108F6.hg38.nobarcode.ctss.bed.gz
|id=FF:10609-108F6
|is_a=EFO:0002091;;FF:0000210;;FF:0100297;;FF:0101533
|is_obsolete=
|library_id=CNhs11734
|library_id_phase_based=2:CNhs11734
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10609
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10609
|name=small-cell gastrointestinal carcinoma cell line:ECC4
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs11734,LSID819,release009,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0.0837055330846845,0,0,0,0,0.299265804484432,0,0.250417131875216,0.953641799258654,0,0,0,0,0,0,0,0,0,0,0,0.167411066169369,0,0.228865533702372,0,0,0,0,0,0.72445914797626,0,0,0.623159953120392,0,0,0,0,0,0,0,0,0,0,0,0,0.202903313001985,0.582279748879062,0,0,0,0,0,0,0,0.401845720273725,0,0,0,0,0,0,0.167411066169369,0.190951407374205,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0.28794376861681,0,0,0,0,0,0,0,0,0.178951981956076,0,0,0,0,0,0,0.0297080996112887,0.167411066169369,0,0,-0.0482412809441,0.123868753637936,0,0,0,0,0.0693757149316621,0.98693688367678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535674918449919,0.167411066169369,0,0,0.224339649027135,0.53022131969657,0,0,0.382188544050799,0,0,0
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|rna_box=108
|rna_catalog_number=
|rna_concentration=0.40869
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=1.96
|rna_od260/280=2.04
|rna_position=F6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=108F6
|rna_weight_ug=19.20843
|rnaseq_library_id=RDhi10076
|sample_age=45
|sample_category=cell lines
|sample_cell_catalog=RCB0982
|sample_cell_line=ECC4
|sample_cell_lot=
|sample_cell_type=unclassifiable
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=small-cell gastrointestinal carcinoma
|sample_donor(cell lot)=
|sample_ethnicity=J
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.85972740199431e-240!GO:0043226;organelle;2.75477341251946e-208!GO:0043229;intracellular organelle;9.02258739819697e-208!GO:0043227;membrane-bound organelle;1.69193828285531e-204!GO:0043231;intracellular membrane-bound organelle;1.69193828285531e-204!GO:0005737;cytoplasm;2.15797677174926e-159!GO:0044422;organelle part;4.7083189854547e-140!GO:0044446;intracellular organelle part;4.93271349329424e-138!GO:0044444;cytoplasmic part;1.45667022147052e-120!GO:0044237;cellular metabolic process;6.2291917968986e-89!GO:0044238;primary metabolic process;7.55418395827149e-88!GO:0043170;macromolecule metabolic process;2.05190151445564e-82!GO:0032991;macromolecular complex;1.14066607213388e-81!GO:0005634;nucleus;3.41129828193264e-81!GO:0030529;ribonucleoprotein complex;1.43923188546608e-68!GO:0044428;nuclear part;7.80510507220631e-65!GO:0003723;RNA binding;7.81663179288953e-61!GO:0043233;organelle lumen;1.21513091906592e-60!GO:0031974;membrane-enclosed lumen;1.21513091906592e-60!GO:0005739;mitochondrion;4.31272582917428e-57!GO:0031090;organelle membrane;3.03812610012448e-56!GO:0043283;biopolymer metabolic process;7.30233576926166e-54!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.23464973754011e-52!GO:0010467;gene expression;7.24172342901829e-50!GO:0005515;protein binding;1.1442490630758e-49!GO:0006396;RNA processing;4.96673734076666e-45!GO:0015031;protein transport;1.37827540556573e-43!GO:0033036;macromolecule localization;1.41147531807359e-42!GO:0043234;protein complex;3.52067680913603e-42!GO:0008104;protein localization;1.54477746862068e-39!GO:0045184;establishment of protein localization;3.53772983217018e-39!GO:0005840;ribosome;2.85559376086454e-38!GO:0044429;mitochondrial part;4.38660166483406e-38!GO:0031967;organelle envelope;1.2534985093322e-37!GO:0019538;protein metabolic process;2.58579359554263e-37!GO:0031975;envelope;2.75182371330157e-37!GO:0016071;mRNA metabolic process;1.61130663421846e-36!GO:0031981;nuclear lumen;6.24140162613967e-36!GO:0006412;translation;6.28739270653289e-35!GO:0003676;nucleic acid binding;5.87668622782956e-34!GO:0016043;cellular component organization and biogenesis;1.14279698905534e-33!GO:0003735;structural constituent of ribosome;2.15976402948585e-33!GO:0044267;cellular protein metabolic process;7.36249355969234e-33!GO:0008380;RNA splicing;1.31314969190671e-32!GO:0006397;mRNA processing;6.13781658080027e-32!GO:0044260;cellular macromolecule metabolic process;6.56260363854731e-32!GO:0033279;ribosomal subunit;7.30390121257347e-32!GO:0009058;biosynthetic process;1.30619897880802e-31!GO:0046907;intracellular transport;3.62704945713311e-30!GO:0009059;macromolecule biosynthetic process;4.0651937789586e-30!GO:0005829;cytosol;9.91858469370123e-29!GO:0012505;endomembrane system;1.35268873962825e-28!GO:0044249;cellular biosynthetic process;3.22154398059752e-28!GO:0016070;RNA metabolic process;3.8488578890939e-28!GO:0065003;macromolecular complex assembly;4.63838225935917e-27!GO:0006886;intracellular protein transport;7.28289170437809e-27!GO:0006259;DNA metabolic process;1.37928360936485e-26!GO:0043228;non-membrane-bound organelle;4.56226784134337e-26!GO:0043232;intracellular non-membrane-bound organelle;4.56226784134337e-26!GO:0006996;organelle organization and biogenesis;1.64552163505217e-24!GO:0005740;mitochondrial envelope;2.47296815191713e-24!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.07107303486965e-24!GO:0051649;establishment of cellular localization;6.85775786728056e-24!GO:0019866;organelle inner membrane;9.86420557147745e-24!GO:0051641;cellular localization;3.83228659507656e-23!GO:0022607;cellular component assembly;4.94799681942042e-23!GO:0006119;oxidative phosphorylation;1.30073231104227e-22!GO:0031966;mitochondrial membrane;1.49093503505368e-22!GO:0005681;spliceosome;2.33853719729708e-22!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.16516858342582e-21!GO:0005743;mitochondrial inner membrane;1.9545447671502e-21!GO:0006457;protein folding;3.89271394300892e-21!GO:0005654;nucleoplasm;3.94604115124046e-21!GO:0000166;nucleotide binding;2.53333076894857e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;9.41330169676399e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.81397061972929e-19!GO:0016462;pyrophosphatase activity;9.81397061972929e-19!GO:0017111;nucleoside-triphosphatase activity;2.5848900879319e-18!GO:0044455;mitochondrial membrane part;2.83172893271085e-18!GO:0006974;response to DNA damage stimulus;8.98572433011433e-18!GO:0044445;cytosolic part;1.39296719769349e-17!GO:0031980;mitochondrial lumen;1.43179058124141e-17!GO:0005759;mitochondrial matrix;1.43179058124141e-17!GO:0044451;nucleoplasm part;2.88835061245122e-17!GO:0015935;small ribosomal subunit;6.93183992184796e-17!GO:0044432;endoplasmic reticulum part;1.29567803568512e-16!GO:0005794;Golgi apparatus;1.43114664216635e-16!GO:0051082;unfolded protein binding;1.58517219817867e-16!GO:0006512;ubiquitin cycle;1.88400976350651e-16!GO:0015934;large ribosomal subunit;4.55375875807875e-16!GO:0005783;endoplasmic reticulum;5.44581550890913e-16!GO:0005746;mitochondrial respiratory chain;5.93948469899152e-16!GO:0016874;ligase activity;8.76438176582857e-16!GO:0016192;vesicle-mediated transport;1.14736110939301e-15!GO:0022618;protein-RNA complex assembly;2.02335883127057e-15!GO:0050136;NADH dehydrogenase (quinone) activity;9.84533555138119e-15!GO:0003954;NADH dehydrogenase activity;9.84533555138119e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;9.84533555138119e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.0422252545412e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.31501554357031e-14!GO:0005730;nucleolus;3.64719628349373e-14!GO:0005635;nuclear envelope;3.83129447318968e-14!GO:0006281;DNA repair;4.43746135553554e-14!GO:0008135;translation factor activity, nucleic acid binding;8.79474754997458e-14!GO:0032553;ribonucleotide binding;1.01596430765427e-13!GO:0032555;purine ribonucleotide binding;1.01596430765427e-13!GO:0016887;ATPase activity;1.17025962124713e-13!GO:0048770;pigment granule;1.76278731272632e-13!GO:0042470;melanosome;1.76278731272632e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.83905948293746e-13!GO:0007049;cell cycle;2.35026443347445e-13!GO:0017076;purine nucleotide binding;2.39391984089724e-13!GO:0006260;DNA replication;2.39692729151127e-13!GO:0005789;endoplasmic reticulum membrane;3.91731201758962e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;5.13455120901128e-13!GO:0031965;nuclear membrane;5.1795534158011e-13!GO:0044265;cellular macromolecule catabolic process;5.50746604869382e-13!GO:0030964;NADH dehydrogenase complex (quinone);7.83495101197795e-13!GO:0045271;respiratory chain complex I;7.83495101197795e-13!GO:0005747;mitochondrial respiratory chain complex I;7.83495101197795e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.04628179148878e-13!GO:0042773;ATP synthesis coupled electron transport;8.04628179148878e-13!GO:0019941;modification-dependent protein catabolic process;8.19860184580825e-13!GO:0043632;modification-dependent macromolecule catabolic process;8.19860184580825e-13!GO:0042623;ATPase activity, coupled;9.92654235238425e-13!GO:0044257;cellular protein catabolic process;1.24523396052623e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.63386183177978e-12!GO:0005761;mitochondrial ribosome;1.76866382130593e-12!GO:0000313;organellar ribosome;1.76866382130593e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.83008981346736e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.96404120117502e-12!GO:0051186;cofactor metabolic process;2.04485974667377e-12!GO:0044453;nuclear membrane part;2.17396400704396e-12!GO:0009719;response to endogenous stimulus;3.50740606572721e-12!GO:0031982;vesicle;5.07652980721593e-12!GO:0016604;nuclear body;6.54431759978351e-12!GO:0008134;transcription factor binding;7.69576245570884e-12!GO:0005524;ATP binding;8.58569660926708e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);9.0802351933965e-12!GO:0043285;biopolymer catabolic process;9.09121732247601e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;9.09121732247601e-12!GO:0000375;RNA splicing, via transesterification reactions;9.09121732247601e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.09121732247601e-12!GO:0031410;cytoplasmic vesicle;9.62840705947038e-12!GO:0005694;chromosome;1.1401396159225e-11!GO:0043412;biopolymer modification;1.18337593762486e-11!GO:0032559;adenyl ribonucleotide binding;1.23892580935899e-11!GO:0048193;Golgi vesicle transport;1.40727447011094e-11!GO:0030554;adenyl nucleotide binding;3.84897879484275e-11!GO:0044427;chromosomal part;4.81186399277385e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.48612177417888e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.48612177417888e-11!GO:0044431;Golgi apparatus part;5.48612177417888e-11!GO:0006163;purine nucleotide metabolic process;7.54798272941158e-11!GO:0009057;macromolecule catabolic process;9.08323777946041e-11!GO:0009055;electron carrier activity;1.25646787303753e-10!GO:0005643;nuclear pore;1.44933304506229e-10!GO:0031988;membrane-bound vesicle;1.48554681378455e-10!GO:0009259;ribonucleotide metabolic process;1.48554681378455e-10!GO:0006605;protein targeting;2.10906274265551e-10!GO:0016023;cytoplasmic membrane-bound vesicle;2.83246184138727e-10!GO:0006464;protein modification process;2.920245874706e-10!GO:0030163;protein catabolic process;3.240204058984e-10!GO:0044248;cellular catabolic process;3.3807490912633e-10!GO:0003743;translation initiation factor activity;4.18478026854522e-10!GO:0006732;coenzyme metabolic process;5.20226150981833e-10!GO:0009150;purine ribonucleotide metabolic process;5.3780881486225e-10!GO:0065002;intracellular protein transport across a membrane;6.02217306554896e-10!GO:0006403;RNA localization;7.86459892830686e-10!GO:0006164;purine nucleotide biosynthetic process;8.09656305521614e-10!GO:0009199;ribonucleoside triphosphate metabolic process;8.74668677633868e-10!GO:0050657;nucleic acid transport;9.3322754422509e-10!GO:0051236;establishment of RNA localization;9.3322754422509e-10!GO:0050658;RNA transport;9.3322754422509e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.11851532472007e-09!GO:0019829;cation-transporting ATPase activity;1.12575932221099e-09!GO:0009141;nucleoside triphosphate metabolic process;1.39842523029844e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.49644246994059e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.49644246994059e-09!GO:0019222;regulation of metabolic process;1.75060937084366e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.9311632998161e-09!GO:0042254;ribosome biogenesis and assembly;2.07519525001374e-09!GO:0051276;chromosome organization and biogenesis;2.18130429747872e-09!GO:0006446;regulation of translational initiation;2.2335275222386e-09!GO:0009260;ribonucleotide biosynthetic process;2.9428552444547e-09!GO:0015986;ATP synthesis coupled proton transport;2.94883549575464e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.94883549575464e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.94883549575464e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.94883549575464e-09!GO:0016607;nuclear speck;3.49836248047368e-09!GO:0006413;translational initiation;4.6902409271175e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.27190002068166e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.27190002068166e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.57491064583312e-09!GO:0006323;DNA packaging;5.61442935086885e-09!GO:0005793;ER-Golgi intermediate compartment;7.68259794421413e-09!GO:0006461;protein complex assembly;1.03170983368126e-08!GO:0046930;pore complex;1.37083899637583e-08!GO:0046034;ATP metabolic process;1.58765913245732e-08!GO:0008565;protein transporter activity;1.85561426851254e-08!GO:0022402;cell cycle process;1.88851039207591e-08!GO:0006261;DNA-dependent DNA replication;2.03427849166576e-08!GO:0003712;transcription cofactor activity;2.62526582932216e-08!GO:0000785;chromatin;2.66134034650783e-08!GO:0050794;regulation of cellular process;3.12875251515274e-08!GO:0004386;helicase activity;3.48347876512786e-08!GO:0000139;Golgi membrane;4.26322151273984e-08!GO:0006754;ATP biosynthetic process;4.5757672997607e-08!GO:0006753;nucleoside phosphate metabolic process;4.5757672997607e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.90272732931658e-08!GO:0015630;microtubule cytoskeleton;4.90272732931658e-08!GO:0009060;aerobic respiration;5.29580182586765e-08!GO:0015078;hydrogen ion transmembrane transporter activity;5.31910442507924e-08!GO:0006399;tRNA metabolic process;5.32066971444249e-08!GO:0051028;mRNA transport;5.70466394039844e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.39427364697403e-08!GO:0043687;post-translational protein modification;7.45818471690368e-08!GO:0045045;secretory pathway;7.9068593914443e-08!GO:0045333;cellular respiration;8.54610524952584e-08!GO:0006350;transcription;9.55864657171229e-08!GO:0016469;proton-transporting two-sector ATPase complex;1.03416661333619e-07!GO:0003697;single-stranded DNA binding;1.04079222873597e-07!GO:0006913;nucleocytoplasmic transport;1.73204151311469e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.73204151311469e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.73755725033251e-07!GO:0043566;structure-specific DNA binding;1.78244024376876e-07!GO:0031323;regulation of cellular metabolic process;3.0775257075852e-07!GO:0006333;chromatin assembly or disassembly;3.29592009664628e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.70561343443785e-07!GO:0048475;coated membrane;4.05724998143523e-07!GO:0030117;membrane coat;4.05724998143523e-07!GO:0008639;small protein conjugating enzyme activity;4.71542482469962e-07!GO:0051169;nuclear transport;4.97775202208854e-07!GO:0051188;cofactor biosynthetic process;5.23162395243065e-07!GO:0016568;chromatin modification;5.88176147435615e-07!GO:0000278;mitotic cell cycle;6.50113022597157e-07!GO:0004842;ubiquitin-protein ligase activity;9.99575128853899e-07!GO:0032446;protein modification by small protein conjugation;1.0116160999182e-06!GO:0007005;mitochondrion organization and biogenesis;1.07267893958448e-06!GO:0030120;vesicle coat;1.15352736891976e-06!GO:0030662;coated vesicle membrane;1.15352736891976e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.17797772257281e-06!GO:0065004;protein-DNA complex assembly;1.22150583700878e-06!GO:0009108;coenzyme biosynthetic process;1.34627133873509e-06!GO:0008026;ATP-dependent helicase activity;1.35865567151738e-06!GO:0004298;threonine endopeptidase activity;1.48235180902352e-06!GO:0005768;endosome;1.48558155044349e-06!GO:0006752;group transfer coenzyme metabolic process;1.87904692501497e-06!GO:0016567;protein ubiquitination;2.0345712836572e-06!GO:0019787;small conjugating protein ligase activity;2.20243537234716e-06!GO:0005657;replication fork;2.595480815947e-06!GO:0000245;spliceosome assembly;2.84356646210677e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.91477454537899e-06!GO:0006099;tricarboxylic acid cycle;2.92236336236851e-06!GO:0046356;acetyl-CoA catabolic process;2.92236336236851e-06!GO:0006366;transcription from RNA polymerase II promoter;3.30913155590236e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.38449148827889e-06!GO:0009117;nucleotide metabolic process;3.40687679444591e-06!GO:0010468;regulation of gene expression;3.44709746260485e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.68263274994742e-06!GO:0032774;RNA biosynthetic process;3.78409412583161e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.78154229430094e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.78154229430094e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.78154229430094e-06!GO:0006351;transcription, DNA-dependent;4.82052574368379e-06!GO:0016072;rRNA metabolic process;5.16952056733634e-06!GO:0006364;rRNA processing;6.0903466395276e-06!GO:0012501;programmed cell death;6.0903466395276e-06!GO:0016881;acid-amino acid ligase activity;6.0980998860011e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.16644420294116e-06!GO:0015399;primary active transmembrane transporter activity;6.16644420294116e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;6.74749877983187e-06!GO:0006818;hydrogen transport;7.16313836681731e-06!GO:0006915;apoptosis;7.21294149210905e-06!GO:0016779;nucleotidyltransferase activity;7.26448452827224e-06!GO:0006084;acetyl-CoA metabolic process;7.61379971604103e-06!GO:0008654;phospholipid biosynthetic process;8.15789311911465e-06!GO:0015992;proton transport;9.5719786181347e-06!GO:0005798;Golgi-associated vesicle;9.67999950280474e-06!GO:0051187;cofactor catabolic process;9.91491871719613e-06!GO:0045454;cell redox homeostasis;1.02336264323382e-05!GO:0045259;proton-transporting ATP synthase complex;1.02944637031903e-05!GO:0043038;amino acid activation;1.07463871743249e-05!GO:0006418;tRNA aminoacylation for protein translation;1.07463871743249e-05!GO:0043039;tRNA aminoacylation;1.07463871743249e-05!GO:0022403;cell cycle phase;1.21910622068128e-05!GO:0009056;catabolic process;1.77919713947255e-05!GO:0051789;response to protein stimulus;1.81939601511148e-05!GO:0006986;response to unfolded protein;1.81939601511148e-05!GO:0006613;cotranslational protein targeting to membrane;1.93686571656042e-05!GO:0009109;coenzyme catabolic process;2.29444326969076e-05!GO:0016564;transcription repressor activity;2.45223077517888e-05!GO:0050789;regulation of biological process;3.05287366580627e-05!GO:0005773;vacuole;3.28931090597452e-05!GO:0045449;regulation of transcription;3.28931090597452e-05!GO:0003899;DNA-directed RNA polymerase activity;3.35902835548558e-05!GO:0008219;cell death;3.50478122509423e-05!GO:0016265;death;3.50478122509423e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.13811068759548e-05!GO:0015631;tubulin binding;4.28111356124309e-05!GO:0016787;hydrolase activity;4.28111356124309e-05!GO:0005874;microtubule;4.38466043950974e-05!GO:0003724;RNA helicase activity;5.21448340797542e-05!GO:0043021;ribonucleoprotein binding;5.88300443135931e-05!GO:0017038;protein import;7.63563877741518e-05!GO:0032940;secretion by cell;8.26580463648498e-05!GO:0003714;transcription corepressor activity;8.74167925941288e-05!GO:0005762;mitochondrial large ribosomal subunit;8.92912299937336e-05!GO:0000315;organellar large ribosomal subunit;8.92912299937336e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;9.0188404242611e-05!GO:0006793;phosphorus metabolic process;9.12754056224574e-05!GO:0006796;phosphate metabolic process;9.12754056224574e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;9.32850114236051e-05!GO:0000314;organellar small ribosomal subunit;9.3562426753389e-05!GO:0005763;mitochondrial small ribosomal subunit;9.3562426753389e-05!GO:0044440;endosomal part;9.70368206083565e-05!GO:0010008;endosome membrane;9.70368206083565e-05!GO:0043492;ATPase activity, coupled to movement of substances;9.74852953789322e-05!GO:0003677;DNA binding;0.000102106262154739!GO:0019899;enzyme binding;0.00010385512344195!GO:0051168;nuclear export;0.000113807943557!GO:0005788;endoplasmic reticulum lumen;0.000117960502413314!GO:0016740;transferase activity;0.000126867815858951!GO:0031497;chromatin assembly;0.00014702515353992!GO:0033116;ER-Golgi intermediate compartment membrane;0.000148371432244215!GO:0006334;nucleosome assembly;0.00015220498207791!GO:0046474;glycerophospholipid biosynthetic process;0.000160478730562048!GO:0006355;regulation of transcription, DNA-dependent;0.000166818522753326!GO:0043623;cellular protein complex assembly;0.000167060238798059!GO:0004576;oligosaccharyl transferase activity;0.000181558349970319!GO:0051726;regulation of cell cycle;0.000182032306189148!GO:0008250;oligosaccharyl transferase complex;0.000216165418298538!GO:0000151;ubiquitin ligase complex;0.000238586715787171!GO:0030880;RNA polymerase complex;0.000241190188260837!GO:0000074;regulation of progression through cell cycle;0.000260437009242462!GO:0016363;nuclear matrix;0.000264882238693129!GO:0000087;M phase of mitotic cell cycle;0.000270456779271596!GO:0051246;regulation of protein metabolic process;0.000310949220146607!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000311453077657024!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000317716304725501!GO:0031324;negative regulation of cellular metabolic process;0.000317716304725501!GO:0046489;phosphoinositide biosynthetic process;0.000324485295718689!GO:0006612;protein targeting to membrane;0.00033010720449756!GO:0009892;negative regulation of metabolic process;0.000334346137341383!GO:0007067;mitosis;0.000362623066981011!GO:0043069;negative regulation of programmed cell death;0.000411698099302097!GO:0046467;membrane lipid biosynthetic process;0.000433531046035975!GO:0009165;nucleotide biosynthetic process;0.000456751281534685!GO:0030867;rough endoplasmic reticulum membrane;0.000459556472432922!GO:0005770;late endosome;0.000467158987368241!GO:0048471;perinuclear region of cytoplasm;0.000488248739213923!GO:0031072;heat shock protein binding;0.000503915240981589!GO:0005525;GTP binding;0.000506761616583964!GO:0042981;regulation of apoptosis;0.00051934093779772!GO:0008186;RNA-dependent ATPase activity;0.000523489408343134!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000538187438662888!GO:0000428;DNA-directed RNA polymerase complex;0.000538187438662888!GO:0006414;translational elongation;0.000538187438662888!GO:0016859;cis-trans isomerase activity;0.000547860495391565!GO:0051325;interphase;0.000568319264799017!GO:0030176;integral to endoplasmic reticulum membrane;0.000571038559876596!GO:0043067;regulation of programmed cell death;0.000574436646861878!GO:0051052;regulation of DNA metabolic process;0.000591150091254732!GO:0043066;negative regulation of apoptosis;0.000629378740432071!GO:0016310;phosphorylation;0.000630490292410361!GO:0003729;mRNA binding;0.000631052017375294!GO:0051301;cell division;0.00068511910447631!GO:0005813;centrosome;0.000698642039243893!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000715098492203373!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000730370449518891!GO:0006383;transcription from RNA polymerase III promoter;0.000809835509162743!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000838209496293778!GO:0008094;DNA-dependent ATPase activity;0.000840163914069945!GO:0006891;intra-Golgi vesicle-mediated transport;0.000869735988169665!GO:0005885;Arp2/3 protein complex;0.000877384265958601!GO:0016853;isomerase activity;0.000882299866817515!GO:0018196;peptidyl-asparagine modification;0.000899916951931535!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000899916951931535!GO:0031124;mRNA 3'-end processing;0.000939656302100439!GO:0005665;DNA-directed RNA polymerase II, core complex;0.000967684050587054!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00102046568625814!GO:0000323;lytic vacuole;0.00109145396230969!GO:0005764;lysosome;0.00109145396230969!GO:0030658;transport vesicle membrane;0.00113901335269201!GO:0005815;microtubule organizing center;0.00115202902226186!GO:0008017;microtubule binding;0.00127961181878903!GO:0003690;double-stranded DNA binding;0.00128266269034806!GO:0003713;transcription coactivator activity;0.001298925583318!GO:0051329;interphase of mitotic cell cycle;0.0013348796466647!GO:0030133;transport vesicle;0.00137842626581597!GO:0004004;ATP-dependent RNA helicase activity;0.00145629060723004!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00150215696953445!GO:0044433;cytoplasmic vesicle part;0.00151435539508619!GO:0003746;translation elongation factor activity;0.00153164110217871!GO:0012506;vesicle membrane;0.00159092425004915!GO:0007264;small GTPase mediated signal transduction;0.00163154365404899!GO:0003924;GTPase activity;0.00163283319894607!GO:0030135;coated vesicle;0.00173560180343884!GO:0008033;tRNA processing;0.00179370965472498!GO:0005048;signal sequence binding;0.00183464489513743!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00187875440465971!GO:0051920;peroxiredoxin activity;0.00188104959220571!GO:0016491;oxidoreductase activity;0.00202142061681426!GO:0030118;clathrin coat;0.00208032387610987!GO:0005774;vacuolar membrane;0.00210023808891845!GO:0006091;generation of precursor metabolites and energy;0.00210279019385777!GO:0005637;nuclear inner membrane;0.00213970509034822!GO:0006302;double-strand break repair;0.00214034812811941!GO:0000279;M phase;0.00215040971482482!GO:0042802;identical protein binding;0.00232362227126747!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00241930849475837!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00241930849475837!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00241930849475837!GO:0051170;nuclear import;0.00253881712348235!GO:0030660;Golgi-associated vesicle membrane;0.00256021220346075!GO:0006506;GPI anchor biosynthetic process;0.00256021220346075!GO:0030137;COPI-coated vesicle;0.00261161986888717!GO:0005769;early endosome;0.00306353269189149!GO:0005667;transcription factor complex;0.00306353269189149!GO:0015980;energy derivation by oxidation of organic compounds;0.00310146476202123!GO:0006505;GPI anchor metabolic process;0.00312790513172153!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00320362855740593!GO:0031716;calcitonin receptor binding;0.00324053355727564!GO:0001984;vasodilation of artery during baroreceptor response to increased systemic arterial blood pressure;0.00324053355727564!GO:0000049;tRNA binding;0.00338004841856574!GO:0031252;leading edge;0.00346221222034956!GO:0048500;signal recognition particle;0.00348972487625394!GO:0016563;transcription activator activity;0.0035393143146496!GO:0048523;negative regulation of cellular process;0.00356814799974092!GO:0006916;anti-apoptosis;0.0035836410810848!GO:0030659;cytoplasmic vesicle membrane;0.00365086864339315!GO:0000096;sulfur amino acid metabolic process;0.00366458176197409!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0037070300742214!GO:0000059;protein import into nucleus, docking;0.00374290560624258!GO:0016251;general RNA polymerase II transcription factor activity;0.00386052194426677!GO:0051427;hormone receptor binding;0.00392571104588868!GO:0006606;protein import into nucleus;0.00393274060969223!GO:0043433;negative regulation of transcription factor activity;0.00395141791424766!GO:0008637;apoptotic mitochondrial changes;0.00407288825698239!GO:0006611;protein export from nucleus;0.00434831072490347!GO:0016272;prefoldin complex;0.00449383419810405!GO:0006405;RNA export from nucleus;0.00462172086257004!GO:0043596;nuclear replication fork;0.00462638053220761!GO:0032561;guanyl ribonucleotide binding;0.00468384277336749!GO:0019001;guanyl nucleotide binding;0.00468384277336749!GO:0005905;coated pit;0.00474916112870364!GO:0006509;membrane protein ectodomain proteolysis;0.0049729660025238!GO:0033619;membrane protein proteolysis;0.0049729660025238!GO:0008022;protein C-terminus binding;0.00513743008267872!GO:0044437;vacuolar part;0.00520975804686314!GO:0004527;exonuclease activity;0.00523170200184785!GO:0030663;COPI coated vesicle membrane;0.00529069412268761!GO:0030126;COPI vesicle coat;0.00529069412268761!GO:0006378;mRNA polyadenylation;0.00532610972166016!GO:0005684;U2-dependent spliceosome;0.00533215316714059!GO:0032508;DNA duplex unwinding;0.00567153455380649!GO:0032392;DNA geometric change;0.00567153455380649!GO:0008312;7S RNA binding;0.00567518559914883!GO:0048487;beta-tubulin binding;0.00568180459062305!GO:0006650;glycerophospholipid metabolic process;0.00572976037150523!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00576080734043244!GO:0007006;mitochondrial membrane organization and biogenesis;0.00576288140710365!GO:0031123;RNA 3'-end processing;0.00589984813850354!GO:0035257;nuclear hormone receptor binding;0.00597151056120452!GO:0051087;chaperone binding;0.0062607153593207!GO:0007017;microtubule-based process;0.0063749130201214!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00656543791841939!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00688360504409635!GO:0045047;protein targeting to ER;0.00688360504409635!GO:0006497;protein amino acid lipidation;0.00704475841589705!GO:0006270;DNA replication initiation;0.00817165297564434!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00843029185072699!GO:0022406;membrane docking;0.00859841357210412!GO:0048278;vesicle docking;0.00859841357210412!GO:0006268;DNA unwinding during replication;0.00865360238463562!GO:0006275;regulation of DNA replication;0.00897758347314837!GO:0006904;vesicle docking during exocytosis;0.00906826744137795!GO:0030384;phosphoinositide metabolic process;0.00976284538363051!GO:0050662;coenzyme binding;0.00991227767218182!GO:0006458;'de novo' protein folding;0.00999844581735705!GO:0051084;'de novo' posttranslational protein folding;0.00999844581735705!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0103380107185673!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0103380107185673!GO:0030503;regulation of cell redox homeostasis;0.0103520879728966!GO:0043681;protein import into mitochondrion;0.0103670481830623!GO:0022890;inorganic cation transmembrane transporter activity;0.0104357302254745!GO:0001836;release of cytochrome c from mitochondria;0.0104357302254745!GO:0008092;cytoskeletal protein binding;0.010462377857098!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0105375465166156!GO:0005083;small GTPase regulator activity;0.0111223761881619!GO:0016481;negative regulation of transcription;0.0111295344453576!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0119649467147798!GO:0015002;heme-copper terminal oxidase activity;0.0119649467147798!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0119649467147798!GO:0004129;cytochrome-c oxidase activity;0.0119649467147798!GO:0031902;late endosome membrane;0.0121563753866166!GO:0005663;DNA replication factor C complex;0.0122048691480401!GO:0006401;RNA catabolic process;0.0124117921666915!GO:0030125;clathrin vesicle coat;0.0126938227777753!GO:0030665;clathrin coated vesicle membrane;0.0126938227777753!GO:0065007;biological regulation;0.0127043594981543!GO:0006352;transcription initiation;0.0131727326536091!GO:0005869;dynactin complex;0.0135260124699045!GO:0003756;protein disulfide isomerase activity;0.0137935262397421!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0137935262397421!GO:0005832;chaperonin-containing T-complex;0.0139144164974635!GO:0004448;isocitrate dehydrogenase activity;0.0142941084980789!GO:0003678;DNA helicase activity;0.0144416457529154!GO:0005791;rough endoplasmic reticulum;0.0148064524765648!GO:0003923;GPI-anchor transamidase activity;0.014914029585899!GO:0016255;attachment of GPI anchor to protein;0.014914029585899!GO:0042765;GPI-anchor transamidase complex;0.014914029585899!GO:0006518;peptide metabolic process;0.0155143902512071!GO:0003684;damaged DNA binding;0.0156507759479611!GO:0000209;protein polyubiquitination;0.0158526810328803!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0161862704718096!GO:0051881;regulation of mitochondrial membrane potential;0.0162977169463808!GO:0045786;negative regulation of progression through cell cycle;0.0165482515069004!GO:0006595;polyamine metabolic process;0.0165522133650095!GO:0000786;nucleosome;0.0166710320338079!GO:0033673;negative regulation of kinase activity;0.0166710320338079!GO:0006469;negative regulation of protein kinase activity;0.0166710320338079!GO:0009112;nucleobase metabolic process;0.0166710320338079!GO:0042581;specific granule;0.0167093199375157!GO:0051287;NAD binding;0.0171157283177322!GO:0043022;ribosome binding;0.0174446967267512!GO:0003682;chromatin binding;0.0175274568027599!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0175438701995838!GO:0032594;protein transport within lipid bilayer;0.0175438701995838!GO:0032907;transforming growth factor-beta3 production;0.0175438701995838!GO:0032596;protein transport into lipid raft;0.0175438701995838!GO:0032910;regulation of transforming growth factor-beta3 production;0.0175438701995838!GO:0032595;B cell receptor transport within lipid bilayer;0.0175438701995838!GO:0033606;chemokine receptor transport within lipid bilayer;0.0175438701995838!GO:0032600;chemokine receptor transport out of lipid raft;0.0175438701995838!GO:0032599;protein transport out of lipid raft;0.0175438701995838!GO:0032597;B cell receptor transport into lipid raft;0.0175438701995838!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0175438701995838!GO:0048519;negative regulation of biological process;0.0175438701995838!GO:0006626;protein targeting to mitochondrion;0.0185440447496615!GO:0006338;chromatin remodeling;0.0185440447496615!GO:0016197;endosome transport;0.018551181868665!GO:0016044;membrane organization and biogenesis;0.0186405777162127!GO:0050811;GABA receptor binding;0.0187345040968145!GO:0051539;4 iron, 4 sulfur cluster binding;0.0188551985442705!GO:0005765;lysosomal membrane;0.0191807765975864!GO:0030433;ER-associated protein catabolic process;0.0194959053637089!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0194959053637089!GO:0006839;mitochondrial transport;0.0203397975285325!GO:0008652;amino acid biosynthetic process;0.0203397975285325!GO:0042158;lipoprotein biosynthetic process;0.0205855946069308!GO:0009116;nucleoside metabolic process;0.0209925643609157!GO:0008632;apoptotic program;0.0214229470632751!GO:0005875;microtubule associated complex;0.0218109999287124!GO:0030913;paranodal junction assembly;0.0218302874492113!GO:0032288;myelin formation;0.0218302874492113!GO:0008180;signalosome;0.022002817552431!GO:0006402;mRNA catabolic process;0.0223286668677664!GO:0009100;glycoprotein metabolic process;0.0223953811094353!GO:0030119;AP-type membrane coat adaptor complex;0.0227295401345691!GO:0000075;cell cycle checkpoint;0.0227295401345691!GO:0030131;clathrin adaptor complex;0.0232080196432799!GO:0050178;phenylpyruvate tautomerase activity;0.0239242516533241!GO:0000082;G1/S transition of mitotic cell cycle;0.0240488856153346!GO:0004860;protein kinase inhibitor activity;0.0242978792344124!GO:0044452;nucleolar part;0.0247747833295275!GO:0006860;extracellular amino acid transport;0.0249499082227488!GO:0006284;base-excision repair;0.0250627611160159!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0250769550373645!GO:0051348;negative regulation of transferase activity;0.0256378698871507!GO:0006144;purine base metabolic process;0.0257784522143466!GO:0005112;Notch binding;0.0257784522143466!GO:0000776;kinetochore;0.0260080003613366!GO:0042987;amyloid precursor protein catabolic process;0.0260631245822354!GO:0008408;3'-5' exonuclease activity;0.0261785498237805!GO:0051085;chaperone cofactor-dependent protein folding;0.026228916432506!GO:0016126;sterol biosynthetic process;0.0265701727820249!GO:0051053;negative regulation of DNA metabolic process;0.0268695980286057!GO:0035267;NuA4 histone acetyltransferase complex;0.0277919056959964!GO:0030134;ER to Golgi transport vesicle;0.0280367517891058!GO:0016579;protein deubiquitination;0.0281260461059703!GO:0043414;biopolymer methylation;0.0281797450551662!GO:0007010;cytoskeleton organization and biogenesis;0.028308893377265!GO:0048037;cofactor binding;0.0283424543877692!GO:0006892;post-Golgi vesicle-mediated transport;0.028870608941308!GO:0030968;unfolded protein response;0.0289939032958048!GO:0042769;DNA damage response, detection of DNA damage;0.0291633907841068!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0293393183052888!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0293702214612157!GO:0007040;lysosome organization and biogenesis;0.0293702214612157!GO:0008139;nuclear localization sequence binding;0.0294997847980197!GO:0006376;mRNA splice site selection;0.0296746120153411!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0296746120153411!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0297824981006681!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0298397319753139!GO:0030508;thiol-disulfide exchange intermediate activity;0.0298587170299199!GO:0043601;nuclear replisome;0.0309202220249694!GO:0030894;replisome;0.0309202220249694!GO:0051775;response to redox state;0.0309202220249694!GO:0006980;redox signal response;0.0309202220249694!GO:0008629;induction of apoptosis by intracellular signals;0.0314834590086636!GO:0043130;ubiquitin binding;0.0316446862858073!GO:0032182;small conjugating protein binding;0.0316446862858073!GO:0043631;RNA polyadenylation;0.0320102849605092!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0324646034194554!GO:0010257;NADH dehydrogenase complex assembly;0.0324646034194554!GO:0033108;mitochondrial respiratory chain complex assembly;0.0324646034194554!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0334939912678157!GO:0015036;disulfide oxidoreductase activity;0.0339850231740515!GO:0019867;outer membrane;0.0340556115665154!GO:0050435;beta-amyloid metabolic process;0.0343140219708941!GO:0032405;MutLalpha complex binding;0.0346109469054226!GO:0065009;regulation of a molecular function;0.034966151927637!GO:0048245;eosinophil chemotaxis;0.035089402005736!GO:0000792;heterochromatin;0.0355360435243799!GO:0046983;protein dimerization activity;0.03588230242719!GO:0051128;regulation of cellular component organization and biogenesis;0.0362459268363037!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0362459268363037!GO:0030127;COPII vesicle coat;0.0368796992487493!GO:0012507;ER to Golgi transport vesicle membrane;0.0368796992487493!GO:0043284;biopolymer biosynthetic process;0.0371457462314921!GO:0045936;negative regulation of phosphate metabolic process;0.0374289924392155!GO:0000775;chromosome, pericentric region;0.0376037038501135!GO:0006643;membrane lipid metabolic process;0.0382173074741491!GO:0006516;glycoprotein catabolic process;0.0386912102696616!GO:0006220;pyrimidine nucleotide metabolic process;0.0387573070835516!GO:0007021;tubulin folding;0.0391323782343094!GO:0043189;H4/H2A histone acetyltransferase complex;0.0394827103679872!GO:0031968;organelle outer membrane;0.0401243574215774!GO:0030004;cellular monovalent inorganic cation homeostasis;0.0401243574215774!GO:0055067;monovalent inorganic cation homeostasis;0.0401243574215774!GO:0000303;response to superoxide;0.0401559309662518!GO:0006695;cholesterol biosynthetic process;0.0412057338425408!GO:0040029;regulation of gene expression, epigenetic;0.04128763358402!GO:0044454;nuclear chromosome part;0.0414771743878741!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0415206798452173!GO:0012510;trans-Golgi network transport vesicle membrane;0.0415206798452173!GO:0009066;aspartate family amino acid metabolic process;0.0415654910373538!GO:0006984;ER-nuclear signaling pathway;0.041744924049475!GO:0060164;regulation of timing of neuron differentiation;0.041744924049475!GO:0014017;neuroblast fate commitment;0.041744924049475!GO:0007400;neuroblast fate determination;0.041744924049475!GO:0014016;neuroblast differentiation;0.041744924049475!GO:0060163;subpallium neuron fate commitment;0.041744924049475!GO:0060165;regulation of timing of subpallium neuron differentiation;0.041744924049475!GO:0008270;zinc ion binding;0.041744924049475!GO:0003711;transcription elongation regulator activity;0.041744924049475!GO:0004532;exoribonuclease activity;0.041744924049475!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.041744924049475!GO:0033170;DNA-protein loading ATPase activity;0.0420294080623047!GO:0003689;DNA clamp loader activity;0.0420294080623047!GO:0046483;heterocycle metabolic process;0.0424040820228729!GO:0016605;PML body;0.0430565784665934!GO:0030911;TPR domain binding;0.0431576826859766!GO:0045603;positive regulation of endothelial cell differentiation;0.0431722381276354!GO:0042770;DNA damage response, signal transduction;0.0431722381276354!GO:0032404;mismatch repair complex binding;0.0432844075174313!GO:0030027;lamellipodium;0.0435874216726161!GO:0016584;nucleosome positioning;0.0435874216726161!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0450684759627615!GO:0019318;hexose metabolic process;0.0452255777381531!GO:0008156;negative regulation of DNA replication;0.0461561490052232!GO:0045767;regulation of anti-apoptosis;0.0462525218966516!GO:0008538;proteasome activator activity;0.0463098003636094!GO:0046979;TAP2 binding;0.048159977447963!GO:0046977;TAP binding;0.048159977447963!GO:0046978;TAP1 binding;0.048159977447963!GO:0004674;protein serine/threonine kinase activity;0.0485330990101486!GO:0008536;Ran GTPase binding;0.0486352973769322!GO:0005784;translocon complex;0.0486812891355966!GO:0009003;signal peptidase activity;0.0488593395399884!GO:0030145;manganese ion binding;0.0495513915686953!GO:0006672;ceramide metabolic process;0.0496132919917788!GO:0007033;vacuole organization and biogenesis;0.0497534185876338
|sample_id=10609
|sample_note=
|sample_sex=male
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=intestine
|top_motifs=SNAI1..3:2.82966662231;LMO2:2.80810727022;ZEB1:2.61779373638;ARID5B:2.37620166644;MYOD1:2.14016117177;ATF6:2.12338680858;NKX6-1,2:2.02198606187;ELK1,4_GABP{A,B1}:1.98792448444;HAND1,2:1.88268599982;FOXQ1:1.82048048965;ONECUT1,2:1.62349829394;RFX1:1.56595650372;ALX1:1.46611847342;NKX2-3_NKX2-5:1.46217787488;HOX{A6,A7,B6,B7}:1.40546706655;FOX{D1,D2}:1.36410976402;ZBTB16:1.31296992563;PDX1:1.2507275433;NFY{A,B,C}:1.17890125882;BREu{core}:1.13296732731;RFX2..5_RFXANK_RFXAP:1.09413095437;NKX3-2:1.09342025096;DBP:1.06460929891;NRF1:1.05853044614;TEF:1.03588582507;PAX3,7:1.03425012285;NHLH1,2:0.894839746258;TGIF1:0.882917473114;NKX3-1:0.874431633943;GFI1:0.861675762674;E2F1..5:0.854347933905;FOXA2:0.844746315923;bHLH_family:0.837360621691;FOX{F1,F2,J1}:0.800906934456;EVI1:0.785363684612;T:0.778568015493;POU6F1:0.770118504023;FOXN1:0.765396417639;FOXO1,3,4:0.730562550394;YY1:0.718779104192;XCPE1{core}:0.700158673185;ZNF143:0.687496383969;NR6A1:0.670125185888;FOXP1:0.656731253173;SOX{8,9,10}:0.646308742531;ATF4:0.637838935366;HIF1A:0.594111430468;MYFfamily:0.586348589748;ATF5_CREB3:0.534373889299;NANOG:0.52841086957;ATF2:0.520880549136;ADNP_IRX_SIX_ZHX:0.498970066369;PAX4:0.487609566771;FOXL1:0.482875803658;AIRE:0.438606169662;UFEwm:0.422450741482;MAFB:0.418192842213;FOX{I1,J2}:0.399013082672;REST:0.397706521823;PAX8:0.37953551058;SREBF1,2:0.372109685882;GFI1B:0.36125786171;NR5A1,2:0.354847910932;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.354214504555;FOXM1:0.347507422122;TBX4,5:0.340892711219;POU2F1..3:0.329128784654;ZBTB6:0.306312697182;CDX1,2,4:0.245322022597;JUN:0.232124577324;POU1F1:0.230957993791;IKZF2:0.208797320863;HOX{A4,D4}:0.198303512984;PBX1:0.187330756707;RORA:0.1641640981;PPARG:0.16295017478;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.153714387232;XBP1:0.150749937797;MED-1{core}:0.139665325649;PITX1..3:0.122600334868;TFAP2B:0.100644855846;AR:0.0978951617563;SOX2:0.0959041498105;HNF4A_NR2F1,2:0.0951090515887;EGR1..3:0.0540941749219;GCM1,2:0.0322086029962;ELF1,2,4:0.0107131676253;FOXD3:-0.000180661318901;SP1:-0.00359005341065;KLF4:-0.0222532076833;ALX4:-0.0505504027251;SPZ1:-0.0597658264965;NKX2-1,4:-0.0695876319057;STAT1,3:-0.0862866736143;FOSL2:-0.125634946427;TLX2:-0.129162292964;EBF1:-0.133041970626;HMX1:-0.139976189777;HIC1:-0.162199109449;HNF1A:-0.164478179584;SOX17:-0.180965930277;MEF2{A,B,C,D}:-0.181663576298;CUX2:-0.213731630974;TOPORS:-0.216663757848;CREB1:-0.22524590793;ZIC1..3:-0.239423547065;MTE{core}:-0.240890634552;TFDP1:-0.250860561697;POU3F1..4:-0.290904066434;MYB:-0.295402644838;MTF1:-0.318523659244;AHR_ARNT_ARNT2:-0.333448880846;GATA4:-0.336116893819;NANOG{mouse}:-0.342875566271;GATA6:-0.351742133227;FOS_FOS{B,L1}_JUN{B,D}:-0.357347993356;NFE2L1:-0.387363862693;ETS1,2:-0.394820215053;ZFP161:-0.412414899881;NKX2-2,8:-0.413705471346;HOXA9_MEIS1:-0.426902445187;HLF:-0.434744150747;EP300:-0.446581570052;TFAP2{A,C}:-0.458140552763;BACH2:-0.472848054295;EN1,2:-0.494681692897;TAL1_TCF{3,4,12}:-0.502169806553;ZNF423:-0.510814186666;TBP:-0.521054047887;RREB1:-0.524842221737;LHX3,4:-0.528543188534;GTF2I:-0.547833630904;GZF1:-0.549252066116;NFE2:-0.555831707454;SPIB:-0.565863353262;TFAP4:-0.595001375842;SPI1:-0.596850368772;HBP1_HMGB_SSRP1_UBTF:-0.633496021684;FOXP3:-0.649315446137;OCT4_SOX2{dimer}:-0.650733524009;IRF1,2:-0.668825057649;SOX5:-0.672265265624;TFCP2:-0.685200608416;NFKB1_REL_RELA:-0.720615074475;CRX:-0.744078633141;STAT5{A,B}:-0.776852700849;TP53:-0.778328962321;NR1H4:-0.785974445624;PAX2:-0.789489475516;MAZ:-0.803387329753;CEBPA,B_DDIT3:-0.804838252384;PRRX1,2:-0.805254698062;RUNX1..3:-0.806892220341;PAX1,9:-0.814363709987;POU5F1:-0.827476924889;BPTF:-0.84863265796;DMAP1_NCOR{1,2}_SMARC:-0.883797227882;NFE2L2:-0.899367612255;ESR1:-0.912575598405;GLI1..3:-0.914228511586;STAT2,4,6:-0.918293478743;VSX1,2:-0.936339047584;CDC5L:-0.946580690778;RBPJ:-1.00066122219;PATZ1:-1.00905867371;HSF1,2:-1.02300709406;RXR{A,B,G}:-1.02481144755;IKZF1:-1.02602797347;HMGA1,2:-1.03034694592;TEAD1:-1.03392112052;RXRA_VDR{dimer}:-1.05281930134;LEF1_TCF7_TCF7L1,2:-1.08155725044;PAX5:-1.11926435339;ESRRA:-1.15529875162;IRF7:-1.17722268307;NR3C1:-1.1914320734;ZNF384:-1.23393778498;HES1:-1.2510269837;ZNF238:-1.27586296533;NFIX:-1.30198303953;ZNF148:-1.34129396876;MZF1:-1.35668903869;PAX6:-1.41787149199;GTF2A1,2:-1.45241138012;PRDM1:-1.47053764108;TLX1..3_NFIC{dimer}:-1.50774039115;SRF:-1.50860067718;SMAD1..7,9:-1.54451789265;NFIL3:-1.75914889672;NFATC1..3:-1.83153101634;MYBL2:-1.90421920982;HOX{A5,B5}:-1.91804827578
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10609-108F6;search_select_hide=table117:FF:10609-108F6
}}
}}

Latest revision as of 14:31, 3 June 2020

Name:small-cell gastrointestinal carcinoma cell line:ECC4
Species:Human (Homo sapiens)
Library ID:CNhs11734
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueintestine
dev stageNA
sexmale
age45
cell typeunclassifiable
cell lineECC4
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004998
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11734 CAGE DRX008010 DRR008882
Accession ID Hg19

Library idBAMCTSS
CNhs11734 DRZ000307 DRZ001692
Accession ID Hg38

Library idBAMCTSS
CNhs11734 DRZ011657 DRZ013042
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00004998
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10076 RNA-Seq DRX057133 DRR062892
Accession ID Hg19

Library idBAMCTSS
RDhi10076 DRZ007968


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.29
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0386
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.564
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0.582
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.224
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.272
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.167
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.212
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0488
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.059
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0266
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.00988
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.167
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.417
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma1.341
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11734

Jaspar motifP-value
MA0002.29.16619e-4
MA0003.10.318
MA0004.10.318
MA0006.10.973
MA0007.10.473
MA0009.10.45
MA0014.10.706
MA0017.10.485
MA0018.20.00572
MA0019.10.73
MA0024.12.87804e-5
MA0025.10.753
MA0027.10.3
MA0028.16.89781e-7
MA0029.10.622
MA0030.10.0265
MA0031.10.00329
MA0035.20.558
MA0038.10.0842
MA0039.20.182
MA0040.10.931
MA0041.10.551
MA0042.10.655
MA0043.10.715
MA0046.10.882
MA0047.22.65281e-4
MA0048.10.0119
MA0050.12.71715e-6
MA0051.10.00107
MA0052.10.386
MA0055.10.076
MA0057.10.916
MA0058.10.267
MA0059.10.842
MA0060.11.11425e-10
MA0061.17.18208e-5
MA0062.25.70639e-11
MA0065.20.343
MA0066.10.392
MA0067.10.799
MA0068.10.0169
MA0069.10.172
MA0070.10.597
MA0071.10.387
MA0072.10.503
MA0073.10.619
MA0074.10.716
MA0076.13.14093e-11
MA0077.10.303
MA0078.10.997
MA0079.20.454
MA0080.22.59696e-4
MA0081.10.0643
MA0083.10.0161
MA0084.10.484
MA0087.10.648
MA0088.10.6
MA0090.15.57127e-4
MA0091.10.298
MA0092.10.126
MA0093.10.227
MA0099.21.77917e-10
MA0100.10.399
MA0101.11.81901e-5
MA0102.20.0718
MA0103.15.72367e-10
MA0104.20.169
MA0105.15.7269e-5
MA0106.10.811
MA0107.12.66556e-5
MA0108.20.199
MA0111.10.858
MA0112.20.0487
MA0113.10.00965
MA0114.10.348
MA0115.10.0926
MA0116.10.00807
MA0117.10.888
MA0119.10.0267
MA0122.10.373
MA0124.10.589
MA0125.10.0129
MA0131.10.0858
MA0135.10.0115
MA0136.10.108
MA0137.20.0244
MA0138.20.572
MA0139.10.349
MA0140.10.412
MA0141.10.572
MA0142.10.629
MA0143.10.514
MA0144.10.169
MA0145.10.585
MA0146.10.92
MA0147.10.356
MA0148.15.12569e-5
MA0149.10.744
MA0150.10.00255
MA0152.10.254
MA0153.10.211
MA0154.10.00412
MA0155.10.0957
MA0156.10.377
MA0157.10.0305
MA0159.10.0672
MA0160.10.698
MA0162.10.0894
MA0163.10.00381
MA0164.10.789
MA0258.10.172
MA0259.10.266



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11734

Novel motifP-value
10.706
100.893
1000.581
1010.617
1020.127
1030.178
1040.558
1050.354
1060.0176
1070.0673
1080.554
1090.893
110.645
1100.193
1110.228
1120.738
1130.0494
1140.503
1150.0608
1160.216
1170.698
1180.897
1190.706
120.4
1200.372
1210.822
1220.256
1230.575
1240.276
1250.626
1260.607
1270.178
1280.303
1290.668
130.816
1300.276
1310.501
1320.563
1330.477
1340.631
1350.0797
1360.029
1370.0368
1380.736
1390.586
140.725
1400.376
1410.44
1420.854
1430.108
1440.00441
1450.264
1460.5
1470.885
1480.594
1490.854
150.601
1500.656
1510.514
1520.0629
1530.966
1540.752
1550.12
1560.326
1570.41
1580.771
1590.265
160.895
1600.0553
1610.839
1620.901
1630.58
1640.285
1650.538
1660.335
1670.147
1680.0146
1690.0593
170.353
180.553
190.198
20.566
200.94
210.0803
220.144
230.0488
240.405
250.669
260.711
270.949
280.999
290.453
30.257
300.502
310.595
320.0294
330.958
340.085
350.446
360.517
370.626
380.993
390.0517
40.656
400.212
410.39
420.218
430.189
440.421
450.05
460.987
470.411
480.969
490.23
50.754
500.188
510.408
520.132
530.268
540.271
550.454
560.785
570.555
580.405
590.111
60.348
600.112
610.467
620.201
630.226
640.928
650.501
660.294
670.748
680.48
690.884
70.854
700.501
710.612
720.213
730.45
740.291
750.839
760.717
770.0312
780.0974
790.705
80.99
800.0908
810.0797
820.155
830.199
840.493
850.0907
860.2
870.284
880.316
890.605
90.137
900.266
910.188
920.259
930.419
940.443
950.635
960.245
970.485
980.156
990.473



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11734


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
3119 (gastrointestinal system cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101533 (gastrointestinal cancer cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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