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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005641
|DRA_sample_Accession=CAGE@SAMD00005641
|accession_numbers=CAGE;DRX008555;DRR009427;DRZ000852;DRZ002237
|accession_numbers=CAGE;DRX008555;DRR009427;DRZ000852;DRZ002237;DRZ012202;DRZ013587
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|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000992,UBERON:0000991,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0002119,UBERON:0003100,UBERON:0000474
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034
Line 41: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor1.CNhs12372.11756-123H1.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor1.CNhs12372.11756-123H1.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor1.CNhs12372.11756-123H1.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor1.CNhs12372.11756-123H1.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520left%2520ovary%252c%2520donor1.CNhs12372.11756-123H1.hg38.nobarcode.ctss.bed.gz
|id=FF:11756-123H1
|id=FF:11756-123H1
|is_a=EFO:0002091;;FF:0000273
|is_a=EFO:0002091;;FF:0000273
Line 46: Line 51:
|library_id=CNhs12372
|library_id=CNhs12372
|library_id_phase_based=2:CNhs12372
|library_id_phase_based=2:CNhs12372
|name="mesenchymal precursor cell - ovarian cancer left ovary, donor1"
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11756
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11756
|name=mesenchymal precursor cell - ovarian cancer left ovary, donor1
|namespace=FANTOM5
|namespace=FANTOM5
|part_of=
|part_of=
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage="CNhs12372,LSID914,release011,COMPLETED"
|profile_hcage=CNhs12372,LSID914,release011,COMPLETED
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 100:
|top_motifs=HSF1,2:1.97401061992;NKX3-1:1.64501219368;FOX{I1,J2}:1.49552654633;POU3F1..4:1.36598740002;GZF1:1.29804302461;NFIX:1.26025825509;ALX4:1.25135308953;NFATC1..3:1.24572969592;CDC5L:1.2122353532;TAL1_TCF{3,4,12}:1.17851459776;ALX1:1.17439957042;HOX{A5,B5}:1.12638134737;NKX2-2,8:1.12585009999;AIRE:1.10709984789;EN1,2:1.00663524724;TEF:0.997944839721;ZNF384:0.99783547573;EVI1:0.985551026953;NKX2-1,4:0.905803948049;SRF:0.902704997705;CRX:0.894350575883;ZNF238:0.866010674989;TEAD1:0.863628378084;PAX1,9:0.855016806887;HMGA1,2:0.824156040921;PAX8:0.805827023821;UFEwm:0.794990515226;HBP1_HMGB_SSRP1_UBTF:0.786158410949;HIF1A:0.755961382021;MYBL2:0.753866695287;TLX1..3_NFIC{dimer}:0.733932784721;NFE2L2:0.702913003078;IKZF1:0.690372735129;HOX{A4,D4}:0.67358023666;PPARG:0.656953415923;ZIC1..3:0.620531351013;PRDM1:0.617551988997;XBP1:0.593358344944;NFE2L1:0.577637568891;MZF1:0.5732307246;ZBTB6:0.572228254321;NR3C1:0.555875642749;FOS_FOS{B,L1}_JUN{B,D}:0.534539768722;XCPE1{core}:0.513888443765;BACH2:0.501896425523;RXRA_VDR{dimer}:0.495606882455;GATA4:0.475900615802;TFCP2:0.464590857496;GTF2I:0.445182485816;ATF6:0.444191796986;KLF4:0.443849618399;TBP:0.428658122695;SOX17:0.403914330984;TP53:0.383767937836;ONECUT1,2:0.383650643305;TLX2:0.36211140897;ZBTB16:0.357872373889;TBX4,5:0.332721063169;TFDP1:0.332417248605;GTF2A1,2:0.330670055498;GLI1..3:0.298853809658;PAX6:0.294401075312;HLF:0.292271927913;MAFB:0.291961622007;GFI1B:0.291071408783;FOXM1:0.2873857026;NKX3-2:0.286170884623;AR:0.279515902488;HES1:0.277188446309;PAX2:0.275202159934;RXR{A,B,G}:0.265110213521;NFE2:0.263006297621;EBF1:0.242318010331;JUN:0.228936389361;SMAD1..7,9:0.226882081678;SPZ1:0.226389856653;ELK1,4_GABP{A,B1}:0.220962510542;NFIL3:0.219419124971;GCM1,2:0.218430391007;HMX1:0.208739854373;NANOG{mouse}:0.207317768156;MAZ:0.200054548712;POU1F1:0.197851236375;FOSL2:0.18896128003;LEF1_TCF7_TCF7L1,2:0.185123984523;bHLH_family:0.176559658138;AHR_ARNT_ARNT2:0.168801806034;PAX4:0.154026944371;NRF1:0.148100152077;RUNX1..3:0.145788306063;FOXL1:0.145049582842;MTE{core}:0.142890303799;POU5F1:0.14157628552;CDX1,2,4:0.129538585271;NHLH1,2:0.11916993419;PAX3,7:0.0968824492672;ESR1:0.0788058933685;SOX2:0.0747274733453;ARID5B:0.0571630683636;E2F1..5:0.0535964752845;TFAP2B:0.0508587851182;NKX6-1,2:0.0491751821284;ZFP161:0.0420289251354;HNF1A:0.0295109819556;PATZ1:0.0278336867183;RFX1:0.0264870927496;ZNF143:0.0140621459329;ADNP_IRX_SIX_ZHX:0.00531894557514;EP300:0.00472683994437;DBP:-0.000419827753675;ZNF148:-0.000897257209398;NFKB1_REL_RELA:-0.00516233178867;ELF1,2,4:-0.0259921262862;LHX3,4:-0.0269395983438;ATF2:-0.0465913674639;SOX5:-0.0597748522793;IRF1,2:-0.0774053406621;FOXD3:-0.104231897281;POU2F1..3:-0.105956638694;MED-1{core}:-0.112277038628;ETS1,2:-0.121067581714;CEBPA,B_DDIT3:-0.122578158938;MYFfamily:-0.133498567966;STAT5{A,B}:-0.135977423788;MYB:-0.145439465924;STAT1,3:-0.154614104971;EGR1..3:-0.157583570511;POU6F1:-0.161843965349;SP1:-0.164581680324;TFAP2{A,C}:-0.170390273062;GFI1:-0.172601156304;DMAP1_NCOR{1,2}_SMARC:-0.173343614781;HIC1:-0.176565094504;PAX5:-0.178750357297;OCT4_SOX2{dimer}:-0.19157061014;TFAP4:-0.193459546536;RREB1:-0.195262092879;REST:-0.21770027331;PRRX1,2:-0.221211245474;IRF7:-0.234325952179;SREBF1,2:-0.235309695551;SOX{8,9,10}:-0.260373192318;MEF2{A,B,C,D}:-0.260758991897;NR1H4:-0.279285197618;STAT2,4,6:-0.28487734016;PBX1:-0.291792100559;HNF4A_NR2F1,2:-0.294124709898;NR6A1:-0.294993440331;ESRRA:-0.298567694378;CREB1:-0.30090343513;SPI1:-0.302975845839;FOX{D1,D2}:-0.308162229194;YY1:-0.317228913282;ATF5_CREB3:-0.325449269495;GATA6:-0.368580555588;MTF1:-0.368828108572;HOXA9_MEIS1:-0.385248807059;NFY{A,B,C}:-0.395374690407;LMO2:-0.409746420957;TGIF1:-0.415604285314;BPTF:-0.41583169768;SPIB:-0.422430553068;FOXN1:-0.423087002777;FOXA2:-0.431450019175;FOXQ1:-0.455839337997;ZNF423:-0.471024888599;RBPJ:-0.477208960958;FOXO1,3,4:-0.525166637591;TOPORS:-0.526018963065;FOXP3:-0.55809146089;SNAI1..3:-0.566266596413;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.573031123502;HAND1,2:-0.633124150103;FOXP1:-0.64846213998;IKZF2:-0.66551584301;NR5A1,2:-0.678707523208;MYOD1:-0.682522678823;RFX2..5_RFXANK_RFXAP:-0.703197136213;CUX2:-0.706491245116;ZEB1:-0.762060346265;NKX2-3_NKX2-5:-0.797512767679;RORA:-0.802806525718;ATF4:-0.871314091313;NANOG:-0.871674788464;VSX1,2:-0.890650999034;BREu{core}:-0.89068243198;HOX{A6,A7,B6,B7}:-0.927612063317;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.96446174203;PITX1..3:-0.99122643836;T:-1.08626912861;FOX{F1,F2,J1}:-1.10223033397;PDX1:-1.10436892074
|top_motifs=HSF1,2:1.97401061992;NKX3-1:1.64501219368;FOX{I1,J2}:1.49552654633;POU3F1..4:1.36598740002;GZF1:1.29804302461;NFIX:1.26025825509;ALX4:1.25135308953;NFATC1..3:1.24572969592;CDC5L:1.2122353532;TAL1_TCF{3,4,12}:1.17851459776;ALX1:1.17439957042;HOX{A5,B5}:1.12638134737;NKX2-2,8:1.12585009999;AIRE:1.10709984789;EN1,2:1.00663524724;TEF:0.997944839721;ZNF384:0.99783547573;EVI1:0.985551026953;NKX2-1,4:0.905803948049;SRF:0.902704997705;CRX:0.894350575883;ZNF238:0.866010674989;TEAD1:0.863628378084;PAX1,9:0.855016806887;HMGA1,2:0.824156040921;PAX8:0.805827023821;UFEwm:0.794990515226;HBP1_HMGB_SSRP1_UBTF:0.786158410949;HIF1A:0.755961382021;MYBL2:0.753866695287;TLX1..3_NFIC{dimer}:0.733932784721;NFE2L2:0.702913003078;IKZF1:0.690372735129;HOX{A4,D4}:0.67358023666;PPARG:0.656953415923;ZIC1..3:0.620531351013;PRDM1:0.617551988997;XBP1:0.593358344944;NFE2L1:0.577637568891;MZF1:0.5732307246;ZBTB6:0.572228254321;NR3C1:0.555875642749;FOS_FOS{B,L1}_JUN{B,D}:0.534539768722;XCPE1{core}:0.513888443765;BACH2:0.501896425523;RXRA_VDR{dimer}:0.495606882455;GATA4:0.475900615802;TFCP2:0.464590857496;GTF2I:0.445182485816;ATF6:0.444191796986;KLF4:0.443849618399;TBP:0.428658122695;SOX17:0.403914330984;TP53:0.383767937836;ONECUT1,2:0.383650643305;TLX2:0.36211140897;ZBTB16:0.357872373889;TBX4,5:0.332721063169;TFDP1:0.332417248605;GTF2A1,2:0.330670055498;GLI1..3:0.298853809658;PAX6:0.294401075312;HLF:0.292271927913;MAFB:0.291961622007;GFI1B:0.291071408783;FOXM1:0.2873857026;NKX3-2:0.286170884623;AR:0.279515902488;HES1:0.277188446309;PAX2:0.275202159934;RXR{A,B,G}:0.265110213521;NFE2:0.263006297621;EBF1:0.242318010331;JUN:0.228936389361;SMAD1..7,9:0.226882081678;SPZ1:0.226389856653;ELK1,4_GABP{A,B1}:0.220962510542;NFIL3:0.219419124971;GCM1,2:0.218430391007;HMX1:0.208739854373;NANOG{mouse}:0.207317768156;MAZ:0.200054548712;POU1F1:0.197851236375;FOSL2:0.18896128003;LEF1_TCF7_TCF7L1,2:0.185123984523;bHLH_family:0.176559658138;AHR_ARNT_ARNT2:0.168801806034;PAX4:0.154026944371;NRF1:0.148100152077;RUNX1..3:0.145788306063;FOXL1:0.145049582842;MTE{core}:0.142890303799;POU5F1:0.14157628552;CDX1,2,4:0.129538585271;NHLH1,2:0.11916993419;PAX3,7:0.0968824492672;ESR1:0.0788058933685;SOX2:0.0747274733453;ARID5B:0.0571630683636;E2F1..5:0.0535964752845;TFAP2B:0.0508587851182;NKX6-1,2:0.0491751821284;ZFP161:0.0420289251354;HNF1A:0.0295109819556;PATZ1:0.0278336867183;RFX1:0.0264870927496;ZNF143:0.0140621459329;ADNP_IRX_SIX_ZHX:0.00531894557514;EP300:0.00472683994437;DBP:-0.000419827753675;ZNF148:-0.000897257209398;NFKB1_REL_RELA:-0.00516233178867;ELF1,2,4:-0.0259921262862;LHX3,4:-0.0269395983438;ATF2:-0.0465913674639;SOX5:-0.0597748522793;IRF1,2:-0.0774053406621;FOXD3:-0.104231897281;POU2F1..3:-0.105956638694;MED-1{core}:-0.112277038628;ETS1,2:-0.121067581714;CEBPA,B_DDIT3:-0.122578158938;MYFfamily:-0.133498567966;STAT5{A,B}:-0.135977423788;MYB:-0.145439465924;STAT1,3:-0.154614104971;EGR1..3:-0.157583570511;POU6F1:-0.161843965349;SP1:-0.164581680324;TFAP2{A,C}:-0.170390273062;GFI1:-0.172601156304;DMAP1_NCOR{1,2}_SMARC:-0.173343614781;HIC1:-0.176565094504;PAX5:-0.178750357297;OCT4_SOX2{dimer}:-0.19157061014;TFAP4:-0.193459546536;RREB1:-0.195262092879;REST:-0.21770027331;PRRX1,2:-0.221211245474;IRF7:-0.234325952179;SREBF1,2:-0.235309695551;SOX{8,9,10}:-0.260373192318;MEF2{A,B,C,D}:-0.260758991897;NR1H4:-0.279285197618;STAT2,4,6:-0.28487734016;PBX1:-0.291792100559;HNF4A_NR2F1,2:-0.294124709898;NR6A1:-0.294993440331;ESRRA:-0.298567694378;CREB1:-0.30090343513;SPI1:-0.302975845839;FOX{D1,D2}:-0.308162229194;YY1:-0.317228913282;ATF5_CREB3:-0.325449269495;GATA6:-0.368580555588;MTF1:-0.368828108572;HOXA9_MEIS1:-0.385248807059;NFY{A,B,C}:-0.395374690407;LMO2:-0.409746420957;TGIF1:-0.415604285314;BPTF:-0.41583169768;SPIB:-0.422430553068;FOXN1:-0.423087002777;FOXA2:-0.431450019175;FOXQ1:-0.455839337997;ZNF423:-0.471024888599;RBPJ:-0.477208960958;FOXO1,3,4:-0.525166637591;TOPORS:-0.526018963065;FOXP3:-0.55809146089;SNAI1..3:-0.566266596413;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.573031123502;HAND1,2:-0.633124150103;FOXP1:-0.64846213998;IKZF2:-0.66551584301;NR5A1,2:-0.678707523208;MYOD1:-0.682522678823;RFX2..5_RFXANK_RFXAP:-0.703197136213;CUX2:-0.706491245116;ZEB1:-0.762060346265;NKX2-3_NKX2-5:-0.797512767679;RORA:-0.802806525718;ATF4:-0.871314091313;NANOG:-0.871674788464;VSX1,2:-0.890650999034;BREu{core}:-0.89068243198;HOX{A6,A7,B6,B7}:-0.927612063317;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.96446174203;PITX1..3:-0.99122643836;T:-1.08626912861;FOX{F1,F2,J1}:-1.10223033397;PDX1:-1.10436892074
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11756-123H1;search_select_hide=table117:FF:11756-123H1
}}
}}

Latest revision as of 18:18, 4 June 2020

Name:mesenchymal precursor cell - ovarian cancer left ovary, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12372
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueovary
dev stageNA
sexNA
ageNA
cell typemesenchymal precursor cell
cell lineNA
companyNA
collaborationClaudio Schneider LNCIB
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005641
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12372 CAGE DRX008555 DRR009427
Accession ID Hg19

Library idBAMCTSS
CNhs12372 DRZ000852 DRZ002237
Accession ID Hg38

Library idBAMCTSS
CNhs12372 DRZ012202 DRZ013587
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0379
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.143
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.17
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0652
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0207
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.273
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.109
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0588
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0509
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.12
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0642
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.00147
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.0642
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0534
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0554
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.17
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0642
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.12
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.291
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.349
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.75
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.36
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.411
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12372

Jaspar motifP-value
MA0002.20.518
MA0003.10.649
MA0004.10.0782
MA0006.10.47
MA0007.10.852
MA0009.10.206
MA0014.10.851
MA0017.10.197
MA0018.23.59752e-5
MA0019.10.327
MA0024.10.0459
MA0025.10.103
MA0027.10.923
MA0028.10.912
MA0029.10.32
MA0030.10.134
MA0031.10.198
MA0035.20.0714
MA0038.10.172
MA0039.20.0102
MA0040.10.658
MA0041.10.502
MA0042.10.837
MA0043.18.0101e-4
MA0046.10.0605
MA0047.20.565
MA0048.10.15
MA0050.10.0665
MA0051.10.501
MA0052.10.152
MA0055.10.401
MA0057.10.698
MA0058.10.0305
MA0059.10.579
MA0060.19.5868e-5
MA0061.10.431
MA0062.20.0208
MA0065.20.00242
MA0066.10.655
MA0067.10.0219
MA0068.10.276
MA0069.10.714
MA0070.10.994
MA0071.10.228
MA0072.10.361
MA0073.10.833
MA0074.10.355
MA0076.10.706
MA0077.10.945
MA0078.10.619
MA0079.20.153
MA0080.27.14071e-5
MA0081.10.0983
MA0083.15.77886e-4
MA0084.10.0871
MA0087.10.552
MA0088.10.732
MA0090.14.63187e-4
MA0091.10.786
MA0092.10.941
MA0093.10.232
MA0099.25.73956e-15
MA0100.10.643
MA0101.10.0818
MA0102.20.835
MA0103.11.80697e-4
MA0104.20.00647
MA0105.10.0914
MA0106.10.0749
MA0107.10.0586
MA0108.20.0089
MA0111.10.119
MA0112.20.973
MA0113.10.966
MA0114.10.0324
MA0115.10.19
MA0116.10.239
MA0117.10.84
MA0119.10.447
MA0122.10.717
MA0124.10.309
MA0125.10.384
MA0131.10.669
MA0135.10.129
MA0136.17.55281e-4
MA0137.20.91
MA0138.20.0721
MA0139.10.875
MA0140.10.335
MA0141.10.0675
MA0142.10.433
MA0143.10.618
MA0144.10.744
MA0145.10.813
MA0146.10.116
MA0147.10.0517
MA0148.10.806
MA0149.10.723
MA0150.10.0394
MA0152.10.00555
MA0153.10.277
MA0154.10.766
MA0155.10.659
MA0156.10.36
MA0157.10.337
MA0159.10.135
MA0160.10.0225
MA0162.10.0702
MA0163.10.701
MA0164.10.908
MA0258.10.118
MA0259.10.398



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12372

Novel motifP-value
10.673
100.496
1000.317
1010.923
1020.193
1030.709
1040.992
1050.303
1060.884
1070.499
1080.734
1090.455
110.729
1100.184
1110.107
1120.914
1130.0087
1140.646
1150.448
1160.562
1170.842
1180.579
1190.666
120.336
1200.145
1210.772
1220.24
1231.95607e-4
1240.187
1250.973
1260.515
1270.574
1280.851
1290.862
130.439
1300.616
1310.0111
1320.803
1330.659
1340.471
1350.487
1360.969
1370.958
1380.618
1390.667
140.0895
1400.98
1410.595
1420.428
1430.123
1440.922
1450.679
1460.555
1470.0294
1480.658
1490.594
150.816
1500.141
1510.402
1520.32
1530.978
1540.633
1552.0594e-4
1560.468
1570.249
1580.00923
1590.122
160.0962
1600.904
1610.213
1620.783
1630.111
1640.45
1650.936
1660.187
1670.313
1680.985
1690.867
170.867
180.114
190.626
20.484
200.55
210.656
220.875
230.0813
240.225
250.126
260.925
270.951
280.521
290.622
30.923
300.518
310.585
320.00176
330.795
340.699
350.932
360.0404
370.318
380.434
390.127
40.196
400.0635
410.945
420.814
430.586
440.868
450.808
460.952
470.243
480.799
490.0149
50.963
500.674
510.772
520.789
530.0251
540.879
550.283
560.533
570.686
580.123
590.649
60.499
600.544
610.425
620.428
630.916
640.517
650.739
660.662
670.559
680.683
690.133
70.137
700.254
710.374
720.638
730.16
740.569
750.709
760.933
770.323
780.0832
790.04
80.812
800.921
810.778
820.344
830.758
840.583
850.762
860.873
870.354
880.945
890.341
90.494
900.409
910.964
920.928
930.878
940.89
950.534
960.956
970.264
980.00911
990.0292



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12372


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000992 (female gonad)
0000991 (gonad)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002119 (left ovary)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000273 (human mesenchymal precursor cell- ovarian cancer-left ovary sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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