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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005094
|DRA_sample_Accession=CAGE@SAMD00005094
|accession_numbers=CAGE;DRX008419;DRR009291;DRZ000716;DRZ002101
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005094
|accession_numbers=CAGE;DRX008419;DRR009291;DRZ000716;DRZ002101;DRZ012066;DRZ013451
|accession_numbers_RNASeq=sRNA-Seq;DRX037140;DRR041506;DRZ007148
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002367,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002231
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002231
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|def=
|def=
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!2.10!125.69!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.02!104.54!SEBOX;;chr6:1312325..1312340,+!p1@FOXQ1!1.97!148.54!FOXQ1;;chr2:16080659..16080685,+!p1@MYCN!1.84!67.80!MYCN;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.80!HNF4A;;chr1:201979743..201979762,+!p1@ELF3!1.84!67.56!ELF3;;chr14:38064429..38064486,-!p1@FOXA1!1.70!48.83!FOXA1;;chr19:46806868..46806883,+!p3@HIF3A!1.61!39.28!HIF3A;;chr2:171571827..171571853,+!p1@SP5!1.57!35.90!SP5;;chr13:28543431..28543487,-!p1@CDX2!1.53!32.63!CDX2;;chr11:61520075..61520136,+!p1@C11orf9!1.51!65.63!C11orf9;;chr20:55204351..55204377,+!p1@TFAP2C!1.50!38.43!TFAP2C;;chr20:43029862..43029900,+!p1@HNF4A!1.46!27.68!HNF4A;;chr6:126221034..126221056,+!p13@NCOA7!1.45!27.07!NCOA7;;chr18:19749541..19749557,+!p1@GATA6!1.44!81.82!GATA6;;chr14:38064590..38064606,-!p2@FOXA1!1.44!26.71!FOXA1;;chr13:28543285..28543314,-!p2@CDX2!1.44!26.35!CDX2;;chr1:42801540..42801562,-!p4@FOXJ3!1.40!23.93!FOXJ3;;chr7:73038839..73038862,-!p1@MLXIPL!1.36!22.00!MLXIPL;;chr1:201979703..201979721,+!p2@ELF3!1.35!21.39!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.35!21.27!GRHL2;;chr7:115608357..115608372,-!p3@TFEC!1.34!21.03!TFEC;;chr16:85932760..85932775,+!p1@IRF8!1.34!20.91!IRF8;;chr19:33793430..33793447,-!p1@CEBPA!1.33!84.72!CEBPA;;chr20:22564895..22564910,-!p1@FOXA2!1.33!20.18!FOXA2;;chr13:28543388..28543406,-!p3@CDX2!1.32!19.82!CDX2;;chr7:156803329..156803362,-!p1@MNX1!1.28!18.25!MNX1;;chr5:2751762..2751784,-!p1@IRX2!1.23!15.95!IRX2;;chr13:73633131..73633149,+!p1@KLF5!1.22!164.73!KLF5;;chr19:926055..926068,+!p2@ARID3A!1.22!33.84!ARID3A;;chr9:138591319..138591340,-!p1@SOHLH1!1.22!15.71!SOHLH1;;chr5:134369905..134369972,-!p1@PITX1!1.21!23.45!PITX1;;chr5:134369879..134369898,-!p2@PITX1!1.21!15.11!PITX1;;chr17:45928521..45928539,-!p1@SP6!1.20!14.74!SP6;;chr2:25475120..25475176,-!p2@DNMT3A!1.19!19.46!DNMT3A;;chr7:115608319..115608352,-!p4@TFEC!1.18!14.26!TFEC;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.18!14.02!HOXC5;;chr19:46367576..46367592,+!p1@FOXA3!1.17!13.78!FOXA3;;chrX:131547625..131547644,-!p4@MBNL3!1.17!13.66!MBNL3;;chr11:2291814..2291825,-!p2@ASCL2!1.15!13.05!ASCL2;;chr19:926001..926046,+!p1@ARID3A!1.14!44.72!ARID3A;;chr1:214161272..214161322,+!p1@PROX1!1.14!18.25!PROX1;;chr15:96869511..96869525,+!p16@NR2F2!1.14!14.26!NR2F2;;chr1:164528687..164528711,+!p6@PBX1!1.12!14.26!PBX1;;chr5:124084493..124084524,-!p2@ZNF608!1.10!26.11!ZNF608;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.10!11.60!EN2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.10!11.60!SEBOX;;chr17:46688334..46688385,-!p1@HOXB7!1.07!15.71!HOXB7;;chr20:6748325..6748352,+!p1@BMP2!1.06!15.35!BMP2;;chr11:65554528..65554546,+!p1@OVOL1!1.06!10.51!OVOL1;;chr2:25475094..25475112,-!p3@DNMT3A!1.05!10.15!DNMT3A;;chr18:19749386..19749404,+!p2@GATA6!1.04!14.50!GATA6;;chr1:209979467..209979494,-!p1@IRF6!1.04!11.24!IRF6;;chr20:50418128..50418147,-!p2@SALL4!1.04!10.03!SALL4;;chr13:28543253..28543276,-!p5@CDX2!1.03!9.67!CDX2;;chr10:8095593..8095625,+!p3@GATA3!1.00!10.64!GATA3;;chr7:27196267..27196311,-!p1@HOXA7!0.99!8.70!HOXA7;;chr17:46667594..46667619,-!p1@HOXB3!0.97!8.34!HOXB3;;chr5:174151553..174151610,+!p1@MSX2!0.96!13.90!MSX2;;chr3:24536231..24536249,-!p4@THRB!0.96!8.22!THRB;;chr13:28543316..28543329,-!p4@CDX2!0.96!8.10!CDX2;;chr6:21593973..21593988,+!p1@SOX4!0.94!285.83!SOX4;;chr2:171572786..171572840,+!p2@SP5!0.94!7.61!SP5;;chr6:21597765..21597779,+!p2@SOX4!0.93!63.09!SOX4;;chr2:63277948..63277974,+!p1@OTX1!0.93!7.49!OTX1;;chr4:111558135..111558198,-!p2@PITX2!0.93!7.49!PITX2;;chr3:24536253..24536328,-!p1@THRB!0.92!14.14!THRB;;chr2:171571931..171571959,+!p3@SP5!0.92!7.25!SP5;;chr17:41623692..41623715,-!p1@ETV4!0.91!31.67!ETV4;;chr17:41622765..41622821,-!p2@ETV4!0.91!11.12!ETV4;;chr11:19263160..19263176,-!p1@E2F8!0.91!8.46!E2F8;;chr13:79177703..79177729,-!p2@POU4F1!0.91!7.13!POU4F1;;chr20:42295745..42295765,+!p1@MYBL2!0.90!119.05!MYBL2;;chr5:174151612..174151633,+!p2@MSX2!0.90!6.89!MSX2;;chr5:2751785..2751808,-!p2@IRX2!0.89!6.77!IRX2;;chr1:247171316..247171336,-!p3@ZNF695!0.88!10.15!ZNF695;;chr2:16081912..16081931,+!p2@MYCN!0.88!6.53!MYCN;;chr10:51572408..51572454,+!p3@NCOA4!0.87!39.28!NCOA4;;chr17:36105042..36105060,-!p1@HNF1B!0.87!6.41!HNF1B;;chr2:46524897..46524911,+!p2@EPAS1!0.86!18.25!EPAS1;;chr17:7197911..7197964,-!p1@YBX2!0.86!6.28!YBX2;;chr7:27205136..27205164,-!p1@HOXA9!0.86!6.28!HOXA9;;chr20:42295713..42295738,+!p2@MYBL2!0.85!38.55!MYBL2;;chr11:47270477..47270494,+!p4@NR1H3!0.85!8.94!NR1H3;;chr12:121416340..121416360,+!p1@HNF1A!0.85!6.04!HNF1A;;chr12:121416455..121416479,+!p2@HNF1A!0.85!6.04!HNF1A;;chr17:46687959..46688007,-!p2@HOXB7!0.84!8.34!HOXB7;;chrX:84498989..84499003,+!p1@ZNF711!0.84!8.22!ZNF711;;chr12:66218598..66218645,+!p2@HMGA2!0.83!28.04!HMGA2;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.34!IRX5;;chr6:126240380..126240430,+!p2@NCOA7!0.81!14.99!NCOA7;;chr19:58326246..58326262,-!p2@ZNF552!0.81!13.66!ZNF552;;chr5:76383133..7638318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F;;chr12:80084279..80084293,-!p8@PAWR!0.22!1.69!PAWR;;chr22:42269885..42269899,+!p4@SREBF2!0.22!1.45!SREBF2;;chr16:67881588..67881612,-!p2@CENPT!0.22!1.21!CENPT;;chrX:131624020..131624048,-!p9@MBNL3!0.22!0.97!MBNL3;;chr12:53856262..53856278,+!p12@PCBP2!0.22!0.97!PCBP2;;chr6:135502501..135502546,+!p1@MYB!0.22!0.97!MYB;;chr2:25565329..25565342,-!p6@DNMT3A!0.22!0.85!DNMT3A;;chr2:187350973..187351072,+!p1@ZC3H15!0.21!129.08!ZC3H15;;chr5:135468516..135468621,+!p1@SMAD5!0.21!55.23!SMAD5;;chr9:133454943..133455020,+!p1@FUBP3!0.21!49.79!FUBP3;;chr17:17740287..17740307,-!p1@SREBF1!0.21!37.83!SREBF1;;chr21:34144024..34144111,-!p1@GCFC1!0.21!30.09!GCFC1;;chr19:23578226..23578285,-!p1@ZNF91!0.21!24.53!ZNF91;;chr12:132628963..132629027,+!p1@NOC4L!0.21!21.03!NOC4L;;chr14:100705140..100705188,+!p2@YY1!0.21!20.67!YY1;;chr17:61920023..61920110,-!p1@SMARCD2!0.21!19.94!SMARCD2;;chr16:3333443..3333545,+!p1@ZNF263!0.21!17.16!ZNF263;;chr1:246729544..246729572,-!p1@TFB2M!0.21!13.66!TFB2M;;chr12:125052112..125052172,-!p2@NCOR2!0.21!12.57!NCOR2;;chr11:118992269..118992334,+!p1@HINFP!0.21!11.84!HINFP;;chr19:44716678..44716732,+!p1@ZNF227!0.21!9.43!ZNF227;;chr5:56247935..56247959,-!p1@MIER3!0.21!7.25!MIER3;;chr17:5015129..5015187,-!p1@ZNF232!0.21!7.25!ZNF232;;chr5:178157651..178157689,-!p1@ZNF354A!0.21!5.32!ZNF354A;;chr1:161015676..161015694,-!p3@USF1!0.21!4.83!USF1;;chr4:47916543..47916580,-!p2@NFXL1!0.21!4.11!NFXL1;;chr15:57210961..57211012,+!p3@TCF12!0.21!3.99!TCF12;;chr19:19779619..19779670,+!p1@ZNF101!0.21!3.38!ZNF101;;chr16:68564003..68564050,+!p2@ZFP90!0.21!3.14!ZFP90;;chr9:137218362..137218385,+!p4@RXRA!0.21!3.14!RXRA;;chr8:128750555..128750609,+!p5@MYC!0.21!2.18!MYC;;chr19:58892390..58892404,-!p1@ZNF837!0.21!2.05!ZNF837;;chr5:124082580..124082603,-!p4@ZNF608!0.21!0.85!ZNF608;;chr15:85144307..85144329,+!p2@ZSCAN2!0.21!0.85!ZSCAN2;;chr11:85376028..85376035,-!p5@CREBZF!0.21!0.73!CREBZF;;chr10:3824125..3824146,-!p12@KLF6!0.21!0.60!KLF6;;chr11:113930401..113930422,+!p3@ZBTB16!0.21!0.60!ZBTB16;;chr11:113930477..113930488,+!p4@ZBTB16!0.21!0.60!ZBTB16;;chr11:2291849..2291858,-!p4@ASCL2!0.21!0.60!ASCL2;;chr11:34642656..34642667,+!p2@EHF!0.21!0.60!EHF;;chr12:52448420..52448460,+!p5@NR4A1!0.21!0.60!NR4A1;;chr12:54378864..54378884,+!p6@HOXC10!0.21!0.60!HOXC10;;chr12:66217414..66217419,+!p25@HMGA2!0.21!0.60!HMGA2;;chr13:41635806..41635828,-!p14@ELF1!0.21!0.60!ELF1;;chr13:73636334..73636351,+!p6@KLF5!0.21!0.60!KLF5;;chr14:37051798..37051831,-!p1@NKX2-8!0.21!0.60!NKX2-8;;chr14:38065203..38065215,-!p9@FOXA1!0.21!0.60!FOXA1;;chr6:10415484..10415508,-!p3@TFAP2A!0.21!0.60!TFAP2A;;chr6:21594206..21594221,+!p15@SOX4!0.21!0.60!SOX4;;chr7:137565269..137565282,-!p16@CREB3L2!0.21!0.60!CREB3L2;;chr7:27169801..27169844,-!p2@HOXA4!0.21!0.60!HOXA4;;chr7:27196196..27196210,-!p5@HOXA7!0.21!0.60!HOXA7;;chr9:124976328..124976372,-!p2@LHX6!0.21!0.60!LHX6;;chr19:50529329..50529340,+!p6@ZNF473!0.21!0.60!ZNF473;;chr1:161736032..161736035,+!p6@ATF6!0.21!0.60!ATF6;;chr1:164559556..164559568,+!p21@PBX1!0.21!0.60!PBX1;;chr1:209979375..209979386,-!p4@IRF6!0.21!0.60!IRF6;;chr1:214161619..214161629,+!p5@PROX1!0.21!0.60!PROX1;;chr1:3568870..3568881,+!p5@TP73!0.21!0.60!TP73;;chr20:18039673..18039676,-!p4@OVOL2!0.21!0.60!OVOL2;;chrX:24167086..24167111,+!p4@ZFX!0.21!0.60!ZFX;;chr9:126774018..126774055,+!p1@LHX2!0.21!0.60!LHX2;;chrX:47863414..47863425,-!p3@ZNF182!0.21!0.60!ZNF182;;chr17:46667561..46667572,-!p4@HOXB3!0.21!0.60!HOXB3;;chr17:46675619..46675642,-!p5@HOXB6!0.21!0.60!HOXB6;;chr17:46688310..46688323,-!p4@HOXB7!0.21!0.60!HOXB7;;chr17:46691732..46691766,-!p4@HOXB8!0.21!0.60!HOXB8;;chr18:3447536..3447542,+!p23@TGIF1!0.21!0.60!TGIF1;;
|expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!2.10!125.69!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!2.02!104.54!SEBOX;;chr6:1312325..1312340,+!p1@FOXQ1!1.97!148.54!FOXQ1;;chr2:16080659..16080685,+!p1@MYCN!1.84!67.80!MYCN;;chr20:42984330..42984364,+!p2@HNF4A!1.84!67.80!HNF4A;;chr1:201979743..201979762,+!p1@ELF3!1.84!67.56!ELF3;;chr14:38064429..38064486,-!p1@FOXA1!1.70!48.83!FOXA1;;chr19:46806868..46806883,+!p3@HIF3A!1.61!39.28!HIF3A;;chr2:171571827..171571853,+!p1@SP5!1.57!35.90!SP5;;chr13:28543431..28543487,-!p1@CDX2!1.53!32.63!CDX2;;chr11:61520075..61520136,+!p1@C11orf9!1.51!65.63!C11orf9;;chr20:55204351..55204377,+!p1@TFAP2C!1.50!38.43!TFAP2C;;chr20:43029862..43029900,+!p1@HNF4A!1.46!27.68!HNF4A;;chr6:126221034..126221056,+!p13@NCOA7!1.45!27.07!NCOA7;;chr18:19749541..19749557,+!p1@GATA6!1.44!81.82!GATA6;;chr14:38064590..38064606,-!p2@FOXA1!1.44!26.71!FOXA1;;chr13:28543285..28543314,-!p2@CDX2!1.44!26.35!CDX2;;chr1:42801540..42801562,-!p4@FOXJ3!1.40!23.93!FOXJ3;;chr7:73038839..73038862,-!p1@MLXIPL!1.36!22.00!MLXIPL;;chr1:201979703..201979721,+!p2@ELF3!1.35!21.39!ELF3;;chr8:102504651..102504683,+!p1@GRHL2!1.35!21.27!GRHL2;;chr7:115608357..115608372,-!p3@TFEC!1.34!21.03!TFEC;;chr16:85932760..85932775,+!p1@IRF8!1.34!20.91!IRF8;;chr19:33793430..33793447,-!p1@CEBPA!1.33!84.72!CEBPA;;chr20:22564895..22564910,-!p1@FOXA2!1.33!20.18!FOXA2;;chr13:28543388..28543406,-!p3@CDX2!1.32!19.82!CDX2;;chr7:156803329..156803362,-!p1@MNX1!1.28!18.25!MNX1;;chr5:2751762..2751784,-!p1@IRX2!1.23!15.95!IRX2;;chr13:73633131..73633149,+!p1@KLF5!1.22!164.73!KLF5;;chr19:926055..926068,+!p2@ARID3A!1.22!33.84!ARID3A;;chr9:138591319..138591340,-!p1@SOHLH1!1.22!15.71!SOHLH1;;chr5:134369905..134369972,-!p1@PITX1!1.21!23.45!PITX1;;chr5:134369879..134369898,-!p2@PITX1!1.21!15.11!PITX1;;chr17:45928521..45928539,-!p1@SP6!1.20!14.74!SP6;;chr2:25475120..25475176,-!p2@DNMT3A!1.19!19.46!DNMT3A;;chr7:115608319..115608352,-!p4@TFEC!1.18!14.26!TFEC;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.18!14.02!HOXC5;;chr19:46367576..46367592,+!p1@FOXA3!1.17!13.78!FOXA3;;chrX:131547625..131547644,-!p4@MBNL3!1.17!13.66!MBNL3;;chr11:2291814..2291825,-!p2@ASCL2!1.15!13.05!ASCL2;;chr19:926001..926046,+!p1@ARID3A!1.14!44.72!ARID3A;;chr1:214161272..214161322,+!p1@PROX1!1.14!18.25!PROX1;;chr15:96869511..96869525,+!p16@NR2F2!1.14!14.26!NR2F2;;chr1:164528687..164528711,+!p6@PBX1!1.12!14.26!PBX1;;chr5:124084493..124084524,-!p2@ZNF608!1.10!26.11!ZNF608;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.10!11.60!EN2;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!1.10!11.60!SEBOX;;chr17:46688334..46688385,-!p1@HOXB7!1.07!15.71!HOXB7;;chr20:6748325..6748352,+!p1@BMP2!1.06!15.35!BMP2;;chr11:65554528..65554546,+!p1@OVOL1!1.06!10.51!OVOL1;;chr2:25475094..25475112,-!p3@DNMT3A!1.05!10.15!DNMT3A;;chr18:19749386..19749404,+!p2@GATA6!1.04!14.50!GATA6;;chr1:209979467..209979494,-!p1@IRF6!1.04!11.24!IRF6;;chr20:50418128..50418147,-!p2@SALL4!1.04!10.03!SALL4;;chr13:28543253..28543276,-!p5@CDX2!1.03!9.67!CDX2;;chr10:8095593..8095625,+!p3@GATA3!1.00!10.64!GATA3;;chr7:27196267..27196311,-!p1@HOXA7!0.99!8.70!HOXA7;;chr17:46667594..46667619,-!p1@HOXB3!0.97!8.34!HOXB3;;chr5:174151553..174151610,+!p1@MSX2!0.96!13.90!MSX2;;chr3:24536231..24536249,-!p4@THRB!0.96!8.22!THRB;;chr13:28543316..28543329,-!p4@CDX2!0.96!8.10!CDX2;;chr6:21593973..21593988,+!p1@SOX4!0.94!285.83!SOX4;;chr2:171572786..171572840,+!p2@SP5!0.94!7.61!SP5;;chr6:21597765..21597779,+!p2@SOX4!0.93!63.09!SOX4;;chr2:63277948..63277974,+!p1@OTX1!0.93!7.49!OTX1;;chr4:111558135..111558198,-!p2@PITX2!0.93!7.49!PITX2;;chr3:24536253..24536328,-!p1@THRB!0.92!14.14!THRB;;chr2:171571931..171571959,+!p3@SP5!0.92!7.25!SP5;;chr17:41623692..41623715,-!p1@ETV4!0.91!31.67!ETV4;;chr17:41622765..41622821,-!p2@ETV4!0.91!11.12!ETV4;;chr11:19263160..19263176,-!p1@E2F8!0.91!8.46!E2F8;;chr13:79177703..79177729,-!p2@POU4F1!0.91!7.13!POU4F1;;chr20:42295745..42295765,+!p1@MYBL2!0.90!119.05!MYBL2;;chr5:174151612..174151633,+!p2@MSX2!0.90!6.89!MSX2;;chr5:2751785..2751808,-!p2@IRX2!0.89!6.77!IRX2;;chr1:247171316..247171336,-!p3@ZNF695!0.88!10.15!ZNF695;;chr2:16081912..16081931,+!p2@MYCN!0.88!6.53!MYCN;;chr10:51572408..51572454,+!p3@NCOA4!0.87!39.28!NCOA4;;chr17:36105042..36105060,-!p1@HNF1B!0.87!6.41!HNF1B;;chr2:46524897..46524911,+!p2@EPAS1!0.86!18.25!EPAS1;;chr17:7197911..7197964,-!p1@YBX2!0.86!6.28!YBX2;;chr7:27205136..27205164,-!p1@HOXA9!0.86!6.28!HOXA9;;chr20:42295713..42295738,+!p2@MYBL2!0.85!38.55!MYBL2;;chr11:47270477..47270494,+!p4@NR1H3!0.85!8.94!NR1H3;;chr12:121416340..121416360,+!p1@HNF1A!0.85!6.04!HNF1A;;chr12:121416455..121416479,+!p2@HNF1A!0.85!6.04!HNF1A;;chr17:46687959..46688007,-!p2@HOXB7!0.84!8.34!HOXB7;;chrX:84498989..84499003,+!p1@ZNF711!0.84!8.22!ZNF711;;chr12:66218598..66218645,+!p2@HMGA2!0.83!28.04!HMGA2;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.34!IRX5;;chr6:126240380..126240430,+!p2@NCOA7!0.81!14.99!NCOA7;;chr19:58326246..58326262,-!p2@ZNF552!0.81!13.66!ZNF552;;chr5:76383133..7638318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F;;chr12:80084279..80084293,-!p8@PAWR!0.22!1.69!PAWR;;chr22:42269885..42269899,+!p4@SREBF2!0.22!1.45!SREBF2;;chr16:67881588..67881612,-!p2@CENPT!0.22!1.21!CENPT;;chrX:131624020..131624048,-!p9@MBNL3!0.22!0.97!MBNL3;;chr12:53856262..53856278,+!p12@PCBP2!0.22!0.97!PCBP2;;chr6:135502501..135502546,+!p1@MYB!0.22!0.97!MYB;;chr2:25565329..25565342,-!p6@DNMT3A!0.22!0.85!DNMT3A;;chr2:187350973..187351072,+!p1@ZC3H15!0.21!129.08!ZC3H15;;chr5:135468516..135468621,+!p1@SMAD5!0.21!55.23!SMAD5;;chr9:133454943..133455020,+!p1@FUBP3!0.21!49.79!FUBP3;;chr17:17740287..17740307,-!p1@SREBF1!0.21!37.83!SREBF1;;chr21:34144024..34144111,-!p1@GCFC1!0.21!30.09!GCFC1;;chr19:23578226..23578285,-!p1@ZNF91!0.21!24.53!ZNF91;;chr12:132628963..132629027,+!p1@NOC4L!0.21!21.03!NOC4L;;chr14:100705140..100705188,+!p2@YY1!0.21!20.67!YY1;;chr17:61920023..61920110,-!p1@SMARCD2!0.21!19.94!SMARCD2;;chr16:3333443..3333545,+!p1@ZNF263!0.21!17.16!ZNF263;;chr1:246729544..246729572,-!p1@TFB2M!0.21!13.66!TFB2M;;chr12:125052112..125052172,-!p2@NCOR2!0.21!12.57!NCOR2;;chr11:118992269..118992334,+!p1@HINFP!0.21!11.84!HINFP;;chr19:44716678..44716732,+!p1@ZNF227!0.21!9.43!ZNF227;;chr5:56247935..56247959,-!p1@MIER3!0.21!7.25!MIER3;;chr17:5015129..5015187,-!p1@ZNF232!0.21!7.25!ZNF232;;chr5:178157651..178157689,-!p1@ZNF354A!0.21!5.32!ZNF354A;;chr1:161015676..161015694,-!p3@USF1!0.21!4.83!USF1;;chr4:47916543..47916580,-!p2@NFXL1!0.21!4.11!NFXL1;;chr15:57210961..57211012,+!p3@TCF12!0.21!3.99!TCF12;;chr19:19779619..19779670,+!p1@ZNF101!0.21!3.38!ZNF101;;chr16:68564003..68564050,+!p2@ZFP90!0.21!3.14!ZFP90;;chr9:137218362..137218385,+!p4@RXRA!0.21!3.14!RXRA;;chr8:128750555..128750609,+!p5@MYC!0.21!2.18!MYC;;chr19:58892390..58892404,-!p1@ZNF837!0.21!2.05!ZNF837;;chr5:124082580..124082603,-!p4@ZNF608!0.21!0.85!ZNF608;;chr15:85144307..85144329,+!p2@ZSCAN2!0.21!0.85!ZSCAN2;;chr11:85376028..85376035,-!p5@CREBZF!0.21!0.73!CREBZF;;chr10:3824125..3824146,-!p12@KLF6!0.21!0.60!KLF6;;chr11:113930401..113930422,+!p3@ZBTB16!0.21!0.60!ZBTB16;;chr11:113930477..113930488,+!p4@ZBTB16!0.21!0.60!ZBTB16;;chr11:2291849..2291858,-!p4@ASCL2!0.21!0.60!ASCL2;;chr11:34642656..34642667,+!p2@EHF!0.21!0.60!EHF;;chr12:52448420..52448460,+!p5@NR4A1!0.21!0.60!NR4A1;;chr12:54378864..54378884,+!p6@HOXC10!0.21!0.60!HOXC10;;chr12:66217414..66217419,+!p25@HMGA2!0.21!0.60!HMGA2;;chr13:41635806..41635828,-!p14@ELF1!0.21!0.60!ELF1;;chr13:73636334..73636351,+!p6@KLF5!0.21!0.60!KLF5;;chr14:37051798..37051831,-!p1@NKX2-8!0.21!0.60!NKX2-8;;chr14:38065203..38065215,-!p9@FOXA1!0.21!0.60!FOXA1;;chr6:10415484..10415508,-!p3@TFAP2A!0.21!0.60!TFAP2A;;chr6:21594206..21594221,+!p15@SOX4!0.21!0.60!SOX4;;chr7:137565269..137565282,-!p16@CREB3L2!0.21!0.60!CREB3L2;;chr7:27169801..27169844,-!p2@HOXA4!0.21!0.60!HOXA4;;chr7:27196196..27196210,-!p5@HOXA7!0.21!0.60!HOXA7;;chr9:124976328..124976372,-!p2@LHX6!0.21!0.60!LHX6;;chr19:50529329..50529340,+!p6@ZNF473!0.21!0.60!ZNF473;;chr1:161736032..161736035,+!p6@ATF6!0.21!0.60!ATF6;;chr1:164559556..164559568,+!p21@PBX1!0.21!0.60!PBX1;;chr1:209979375..209979386,-!p4@IRF6!0.21!0.60!IRF6;;chr1:214161619..214161629,+!p5@PROX1!0.21!0.60!PROX1;;chr1:3568870..3568881,+!p5@TP73!0.21!0.60!TP73;;chr20:18039673..18039676,-!p4@OVOL2!0.21!0.60!OVOL2;;chrX:24167086..24167111,+!p4@ZFX!0.21!0.60!ZFX;;chr9:126774018..126774055,+!p1@LHX2!0.21!0.60!LHX2;;chrX:47863414..47863425,-!p3@ZNF182!0.21!0.60!ZNF182;;chr17:46667561..46667572,-!p4@HOXB3!0.21!0.60!HOXB3;;chr17:46675619..46675642,-!p5@HOXB6!0.21!0.60!HOXB6;;chr17:46688310..46688323,-!p4@HOXB7!0.21!0.60!HOXB7;;chr17:46691732..46691766,-!p4@HOXB8!0.21!0.60!HOXB8;;chr18:3447536..3447542,+!p23@TGIF1!0.21!0.60!TGIF1;;
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002231;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000079;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000990;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002367;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005399;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
|ffid_belonging_in_development=CL:0000223
|ffid_belonging_in_development=CL:0000223
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Prostate%2520Epithelial%2520Cells%2520%2528polarized%2529%252c%2520donor1.CNhs10882.11253-116F2.hg38.nobarcode.ctss.bed.gz
|id=FF:11253-116F2
|id=FF:11253-116F2
|is_a=EFO:0002091;;FF:0000145
|is_a=EFO:0002091;;FF:0000145
Line 46: Line 54:
|library_id=CNhs10882
|library_id=CNhs10882
|library_id_phase_based=2:CNhs10882
|library_id_phase_based=2:CNhs10882
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11253
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.CCGTCC.11253
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11253
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.CCGTCC.11253
|name=Prostate Epithelial Cells (polarized), donor1
|name=Prostate Epithelial Cells (polarized), donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 53: Line 67:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=SRhi10009,,,
|profile_srnaseq=SRhi10009,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 67: Line 82:
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=HNF1A:3.67607455866;HNF4A_NR2F1,2:3.3108832666;SNAI1..3:2.29529856084;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.07137913701;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.92911780818;ZEB1:1.81066997991;bHLH_family:1.55535612297;FOXA2:1.46039801308;LEF1_TCF7_TCF7L1,2:1.39465993946;NFY{A,B,C}:1.3814973128;LHX3,4:1.35918845656;ESR1:1.32456830006;FOX{F1,F2,J1}:1.29810631691;MYOD1:1.26478997763;ELK1,4_GABP{A,B1}:1.25378036045;E2F1..5:1.1131262924;ESRRA:1.06789106959;RBPJ:1.06770430042;HOX{A6,A7,B6,B7}:1.03290933879;SP1:0.880602523476;ONECUT1,2:0.857497913287;FOXM1:0.835540036351;T:0.716389148317;NRF1:0.668302143997;PBX1:0.665052884662;STAT5{A,B}:0.659634524698;EVI1:0.641729087582;NKX2-3_NKX2-5:0.621171461813;TEAD1:0.620260036562;FOXN1:0.610269698013;RORA:0.603516309574;XCPE1{core}:0.58075337587;TFDP1:0.56778635853;SOX{8,9,10}:0.542729880434;YY1:0.519654145604;TBP:0.475748390316;EN1,2:0.44774471393;GATA6:0.437692773971;LMO2:0.434085691835;NKX3-2:0.409878114676;ZNF143:0.401814106238;FOXQ1:0.392766985177;GFI1:0.328628266479;SOX17:0.29541046087;TBX4,5:0.294550352835;ATF4:0.290414423391;AIRE:0.276081838072;MYB:0.270475336819;PATZ1:0.269906110401;FOXD3:0.266321066112;HLF:0.25543099338;UFEwm:0.253655749488;MED-1{core}:0.23531791582;ALX4:0.234554946251;ARID5B:0.205492637222;STAT1,3:0.198304723938;HIC1:0.184510230463;SREBF1,2:0.179811153976;HES1:0.172985190466;ATF6:0.161427706209;CDX1,2,4:0.151416530109;HOXA9_MEIS1:0.139792487382;MAZ:0.133926962309;RXR{A,B,G}:0.106332304631;RXRA_VDR{dimer}:0.0917821538274;ZNF384:0.0737913270788;FOX{D1,D2}:0.0427724254213;ADNP_IRX_SIX_ZHX:0.0421372525802;TFAP2B:0.0417718764252;TOPORS:0.0256957747304;ZNF148:0.0135794769502;PITX1..3:0.0135642102877;BREu{core}:0.0130951095262;IKZF2:0.00788110916848;FOXP1:-0.00468989087062;NR6A1:-0.0112874508789;EBF1:-0.0161072120841;HAND1,2:-0.0460945551586;PAX5:-0.0551775137524;TFAP2{A,C}:-0.0581924068351;MTE{core}:-0.05930233772;ZFP161:-0.0934112233487;NR5A1,2:-0.103194126308;PDX1:-0.111852151388;HSF1,2:-0.113882256006;IKZF1:-0.121470850611;VSX1,2:-0.128109401503;CEBPA,B_DDIT3:-0.149951432394;PAX3,7:-0.154577604222;KLF4:-0.157439188312;POU6F1:-0.160856121571;SPZ1:-0.162341839654;CRX:-0.167038691991;PAX1,9:-0.173953022604;HOX{A4,D4}:-0.201382020488;HOX{A5,B5}:-0.235111109504;NFIL3:-0.242395473878;MTF1:-0.243476220835;TFCP2:-0.246927303597;NFKB1_REL_RELA:-0.266257925791;FOS_FOS{B,L1}_JUN{B,D}:-0.281383482424;STAT2,4,6:-0.29889774801;NFE2:-0.302907664185;SOX5:-0.304594862256;ZBTB6:-0.318360810757;POU2F1..3:-0.323502202851;PAX4:-0.34768221565;CUX2:-0.350178080125;CDC5L:-0.350842856517;NHLH1,2:-0.353792060474;ELF1,2,4:-0.364915839581;FOXO1,3,4:-0.367852451557;TEF:-0.370990271293;JUN:-0.37901820213;REST:-0.382161085104;FOSL2:-0.382542265131;RREB1:-0.400403467827;ATF2:-0.405296390229;SOX2:-0.416297566573;OCT4_SOX2{dimer}:-0.418015720422;ATF5_CREB3:-0.419235451492;EGR1..3:-0.443360263783;NR3C1:-0.443962585016;XBP1:-0.448801874971;PPARG:-0.452980915911;PAX2:-0.475639784605;BACH2:-0.482342671828;MYBL2:-0.485442151554;POU1F1:-0.510734869495;TP53:-0.572225248498;MYFfamily:-0.575432609327;HMGA1,2:-0.57556494568;SPI1:-0.609068925283;DMAP1_NCOR{1,2}_SMARC:-0.611496118189;PAX8:-0.6168376728;PRDM1:-0.629466089874;MAFB:-0.633180153539;TLX2:-0.635168981778;GTF2A1,2:-0.63736190212;SPIB:-0.640128742299;NFE2L2:-0.645924309137;DBP:-0.648859325709;NR1H4:-0.662259272483;POU3F1..4:-0.671970468756;ZIC1..3:-0.678640118192;IRF7:-0.723744788208;FOXL1:-0.729176688954;TFAP4:-0.739044119393;NFIX:-0.753961510331;MEF2{A,B,C,D}:-0.75591626176;FOXP3:-0.758767119086;RUNX1..3:-0.763958761654;GTF2I:-0.777049966679;AR:-0.786452572625;PRRX1,2:-0.797951825449;ZNF238:-0.807496769643;ZBTB16:-0.810320063348;MZF1:-0.829269428989;RFX1:-0.838420812573;AHR_ARNT_ARNT2:-0.844858588898;ZNF423:-0.858109527112;RFX2..5_RFXANK_RFXAP:-0.874085967062;NKX6-1,2:-0.878775915277;GFI1B:-0.889272885655;HIF1A:-0.889744390366;ALX1:-0.890365244177;NANOG:-0.92591406991;IRF1,2:-0.93980073757;SRF:-0.940820329206;FOX{I1,J2}:-1.02045370568;ETS1,2:-1.02573467004;TAL1_TCF{3,4,12}:-1.03755115681;NKX2-2,8:-1.0462370962;GLI1..3:-1.07929505369;CREB1:-1.10508369141;BPTF:-1.10557098669;POU5F1:-1.11190676481;GATA4:-1.15606557493;NANOG{mouse}:-1.16316997889;NKX2-1,4:-1.17516328506;HBP1_HMGB_SSRP1_UBTF:-1.23718270211;EP300:-1.25675778408;NKX3-1:-1.26107397046;TLX1..3_NFIC{dimer}:-1.2702434675;GZF1:-1.32175316946;HMX1:-1.3290236583;TGIF1:-1.35175474157;NFE2L1:-1.46920208494;PAX6:-1.51853833501;SMAD1..7,9:-1.61754777451;GCM1,2:-1.71874788692;NFATC1..3:-1.78868700668
|top_motifs=HNF1A:3.67607455866;HNF4A_NR2F1,2:3.3108832666;SNAI1..3:2.29529856084;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.07137913701;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.92911780818;ZEB1:1.81066997991;bHLH_family:1.55535612297;FOXA2:1.46039801308;LEF1_TCF7_TCF7L1,2:1.39465993946;NFY{A,B,C}:1.3814973128;LHX3,4:1.35918845656;ESR1:1.32456830006;FOX{F1,F2,J1}:1.29810631691;MYOD1:1.26478997763;ELK1,4_GABP{A,B1}:1.25378036045;E2F1..5:1.1131262924;ESRRA:1.06789106959;RBPJ:1.06770430042;HOX{A6,A7,B6,B7}:1.03290933879;SP1:0.880602523476;ONECUT1,2:0.857497913287;FOXM1:0.835540036351;T:0.716389148317;NRF1:0.668302143997;PBX1:0.665052884662;STAT5{A,B}:0.659634524698;EVI1:0.641729087582;NKX2-3_NKX2-5:0.621171461813;TEAD1:0.620260036562;FOXN1:0.610269698013;RORA:0.603516309574;XCPE1{core}:0.58075337587;TFDP1:0.56778635853;SOX{8,9,10}:0.542729880434;YY1:0.519654145604;TBP:0.475748390316;EN1,2:0.44774471393;GATA6:0.437692773971;LMO2:0.434085691835;NKX3-2:0.409878114676;ZNF143:0.401814106238;FOXQ1:0.392766985177;GFI1:0.328628266479;SOX17:0.29541046087;TBX4,5:0.294550352835;ATF4:0.290414423391;AIRE:0.276081838072;MYB:0.270475336819;PATZ1:0.269906110401;FOXD3:0.266321066112;HLF:0.25543099338;UFEwm:0.253655749488;MED-1{core}:0.23531791582;ALX4:0.234554946251;ARID5B:0.205492637222;STAT1,3:0.198304723938;HIC1:0.184510230463;SREBF1,2:0.179811153976;HES1:0.172985190466;ATF6:0.161427706209;CDX1,2,4:0.151416530109;HOXA9_MEIS1:0.139792487382;MAZ:0.133926962309;RXR{A,B,G}:0.106332304631;RXRA_VDR{dimer}:0.0917821538274;ZNF384:0.0737913270788;FOX{D1,D2}:0.0427724254213;ADNP_IRX_SIX_ZHX:0.0421372525802;TFAP2B:0.0417718764252;TOPORS:0.0256957747304;ZNF148:0.0135794769502;PITX1..3:0.0135642102877;BREu{core}:0.0130951095262;IKZF2:0.00788110916848;FOXP1:-0.00468989087062;NR6A1:-0.0112874508789;EBF1:-0.0161072120841;HAND1,2:-0.0460945551586;PAX5:-0.0551775137524;TFAP2{A,C}:-0.0581924068351;MTE{core}:-0.05930233772;ZFP161:-0.0934112233487;NR5A1,2:-0.103194126308;PDX1:-0.111852151388;HSF1,2:-0.113882256006;IKZF1:-0.121470850611;VSX1,2:-0.128109401503;CEBPA,B_DDIT3:-0.149951432394;PAX3,7:-0.154577604222;KLF4:-0.157439188312;POU6F1:-0.160856121571;SPZ1:-0.162341839654;CRX:-0.167038691991;PAX1,9:-0.173953022604;HOX{A4,D4}:-0.201382020488;HOX{A5,B5}:-0.235111109504;NFIL3:-0.242395473878;MTF1:-0.243476220835;TFCP2:-0.246927303597;NFKB1_REL_RELA:-0.266257925791;FOS_FOS{B,L1}_JUN{B,D}:-0.281383482424;STAT2,4,6:-0.29889774801;NFE2:-0.302907664185;SOX5:-0.304594862256;ZBTB6:-0.318360810757;POU2F1..3:-0.323502202851;PAX4:-0.34768221565;CUX2:-0.350178080125;CDC5L:-0.350842856517;NHLH1,2:-0.353792060474;ELF1,2,4:-0.364915839581;FOXO1,3,4:-0.367852451557;TEF:-0.370990271293;JUN:-0.37901820213;REST:-0.382161085104;FOSL2:-0.382542265131;RREB1:-0.400403467827;ATF2:-0.405296390229;SOX2:-0.416297566573;OCT4_SOX2{dimer}:-0.418015720422;ATF5_CREB3:-0.419235451492;EGR1..3:-0.443360263783;NR3C1:-0.443962585016;XBP1:-0.448801874971;PPARG:-0.452980915911;PAX2:-0.475639784605;BACH2:-0.482342671828;MYBL2:-0.485442151554;POU1F1:-0.510734869495;TP53:-0.572225248498;MYFfamily:-0.575432609327;HMGA1,2:-0.57556494568;SPI1:-0.609068925283;DMAP1_NCOR{1,2}_SMARC:-0.611496118189;PAX8:-0.6168376728;PRDM1:-0.629466089874;MAFB:-0.633180153539;TLX2:-0.635168981778;GTF2A1,2:-0.63736190212;SPIB:-0.640128742299;NFE2L2:-0.645924309137;DBP:-0.648859325709;NR1H4:-0.662259272483;POU3F1..4:-0.671970468756;ZIC1..3:-0.678640118192;IRF7:-0.723744788208;FOXL1:-0.729176688954;TFAP4:-0.739044119393;NFIX:-0.753961510331;MEF2{A,B,C,D}:-0.75591626176;FOXP3:-0.758767119086;RUNX1..3:-0.763958761654;GTF2I:-0.777049966679;AR:-0.786452572625;PRRX1,2:-0.797951825449;ZNF238:-0.807496769643;ZBTB16:-0.810320063348;MZF1:-0.829269428989;RFX1:-0.838420812573;AHR_ARNT_ARNT2:-0.844858588898;ZNF423:-0.858109527112;RFX2..5_RFXANK_RFXAP:-0.874085967062;NKX6-1,2:-0.878775915277;GFI1B:-0.889272885655;HIF1A:-0.889744390366;ALX1:-0.890365244177;NANOG:-0.92591406991;IRF1,2:-0.93980073757;SRF:-0.940820329206;FOX{I1,J2}:-1.02045370568;ETS1,2:-1.02573467004;TAL1_TCF{3,4,12}:-1.03755115681;NKX2-2,8:-1.0462370962;GLI1..3:-1.07929505369;CREB1:-1.10508369141;BPTF:-1.10557098669;POU5F1:-1.11190676481;GATA4:-1.15606557493;NANOG{mouse}:-1.16316997889;NKX2-1,4:-1.17516328506;HBP1_HMGB_SSRP1_UBTF:-1.23718270211;EP300:-1.25675778408;NKX3-1:-1.26107397046;TLX1..3_NFIC{dimer}:-1.2702434675;GZF1:-1.32175316946;HMX1:-1.3290236583;TGIF1:-1.35175474157;NFE2L1:-1.46920208494;PAX6:-1.51853833501;SMAD1..7,9:-1.61754777451;GCM1,2:-1.71874788692;NFATC1..3:-1.78868700668
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11253-116F2;search_select_hide=table117:FF:11253-116F2
}}
}}

Latest revision as of 16:28, 3 June 2020

Name:Prostate Epithelial Cells (polarized), donor1
Species:Human (Homo sapiens)
Library ID:CNhs10882
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueprostate
dev stage56 years old adult
sexmale
age56
cell typeepithelial cell
cell lineNA
companyCell systems
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005094
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10882 CAGE DRX008419 DRR009291
Accession ID Hg19

Library idBAMCTSS
CNhs10882 DRZ000716 DRZ002101
Accession ID Hg38

Library idBAMCTSS
CNhs10882 DRZ012066 DRZ013451
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005094
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10009.CCGTCC sRNA-Seq DRX037140 DRR041506
Accession ID Hg19

Library idBAMCTSS
SRhi10009.CCGTCC DRZ007148


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0124
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.429
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0.0496
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.052
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.00531
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0267
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0.0496
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.174
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.0496
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.148
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.171
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0.307
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.00764
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0.723
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.205
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0.094
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.384
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.094
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.205
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10882

Jaspar motifP-value
MA0002.28.13508e-4
MA0003.10.96
MA0004.10.0122
MA0006.10.535
MA0007.10.711
MA0009.10.128
MA0014.10.0239
MA0017.12.07906e-12
MA0018.20.866
MA0019.10.405
MA0024.11.1328e-5
MA0025.10.0783
MA0027.10.649
MA0028.10.00131
MA0029.10.0132
MA0030.10.147
MA0031.10.105
MA0035.26.51313e-4
MA0038.10.00336
MA0039.20.0126
MA0040.10.143
MA0041.10.544
MA0042.10.392
MA0043.10.785
MA0046.15.61761e-72
MA0047.25.23731e-5
MA0048.10.8
MA0050.15.27617e-4
MA0051.10.0551
MA0052.10.0218
MA0055.10.0164
MA0057.10.79
MA0058.19.25277e-4
MA0059.10.0205
MA0060.11.46278e-12
MA0061.17.69277e-5
MA0062.20.015
MA0065.24.58583e-4
MA0066.10.397
MA0067.10.0478
MA0068.10.64
MA0069.10.797
MA0070.10.194
MA0071.10.621
MA0072.10.466
MA0073.10.564
MA0074.10.232
MA0076.10.00121
MA0077.10.215
MA0078.10.29
MA0079.20.4
MA0080.21.43322e-11
MA0081.10.0174
MA0083.10.0506
MA0084.10.544
MA0087.10.733
MA0088.10.86
MA0090.10.0561
MA0091.10.0473
MA0092.10.0769
MA0093.10.00662
MA0099.21.80387e-7
MA0100.10.566
MA0101.10.0188
MA0102.20.679
MA0103.12.97776e-7
MA0104.20.00509
MA0105.15.15989e-6
MA0106.10.225
MA0107.10.00243
MA0108.20.143
MA0111.10.654
MA0112.20.16
MA0113.10.689
MA0114.11.06626e-16
MA0115.11.71884e-6
MA0116.12.19497e-4
MA0117.10.681
MA0119.10.00171
MA0122.10.401
MA0124.10.331
MA0125.10.016
MA0131.10.421
MA0135.10.197
MA0136.11.64551e-7
MA0137.20.101
MA0138.20.616
MA0139.10.267
MA0140.10.0271
MA0141.10.109
MA0142.10.833
MA0143.10.845
MA0144.10.0817
MA0145.10.257
MA0146.10.403
MA0147.10.032
MA0148.11.70039e-4
MA0149.10.558
MA0150.15.73255e-4
MA0152.10.337
MA0153.11.49207e-53
MA0154.10.00317
MA0155.10.75
MA0156.11.02017e-4
MA0157.10.976
MA0159.10.666
MA0160.10.258
MA0162.10.645
MA0163.10.139
MA0164.10.112
MA0258.10.616
MA0259.10.357



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10882

Novel motifP-value
10.357
100.3
1000.249
1010.448
1020.606
1030.726
1040.673
1050.782
1060.0982
1070.523
1080.935
1090.431
110.261
1100.328
1110.841
1120.0957
1130.0361
1140.296
1150.627
1160.66
1170.636
1180.333
1190.88
120.931
1200.247
1210.501
1220.7
1230.0708
1240.871
1250.0128
1260.543
1270.3
1280.022
1290.88
130.0354
1300.591
1310.058
1320.872
1330.147
1340.0858
1350.0666
1360.0114
1370.00993
1380.0265
1390.0799
140.243
1400.992
1410.996
1420.736
1430.0113
1440.369
1450.168
1460.518
1470.789
1480.435
1490.963
150.339
1500.31
1510.656
1520.141
1530.136
1540.0624
1550.0573
1560.581
1570.873
1580.806
1590.532
160.554
1600.14
1610.641
1620.878
1630.224
1640.934
1650.604
1660.0723
1670.87
1680.506
1690.462
170.729
180.0204
190.32
20.535
200.396
210.421
220.665
230.0195
240.827
250.782
260.794
270.489
280.711
290.504
30.302
300.682
310.796
320.154
330.908
340.442
350.249
360.893
370.597
380.954
390.415
40.784
400.0967
410.0134
420.413
430.14
440.184
450.62
460.434
470.944
480.796
490.197
50.21
500.623
510.985
520.711
530.332
540.994
550.207
560.872
570.343
580.457
590.246
60.492
600.263
610.22
620.233
630.409
640.643
650.148
660.0234
670.167
680.343
690.275
70.458
700.176
710.296
720.356
730.26
740.0392
750.518
760.747
770.928
780.0053
790.304
80.508
800.483
810.144
820.024
830.511
840.347
850.0687
860.358
870.216
880.894
890.358
90.0464
900.478
910.00673
920.102
930.702
940.0318
950.148
960.0297
970.904
980.468
990.487



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10882


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002231 (epithelial cell of prostate)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002367 (prostate gland)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000145 (human prostate epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000223 (endodermal cell)

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