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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005214
|DRA_sample_Accession=CAGE@SAMD00005214
|accession_numbers=CAGE;DRX007944;DRR008816;DRZ000241;DRZ001626
|accession_numbers=CAGE;DRX007944;DRR008816;DRZ000241;DRZ001626;DRZ011591;DRZ012976
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
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|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/mesothelioma%2520cell%2520line%253aMero-84.CNhs13072.10855-111F9.hg38.nobarcode.ctss.bed.gz
|id=FF:10855-111F9
|id=FF:10855-111F9
|is_a=EFO:0002091;;FF:0000210;;FF:0102424
|is_a=EFO:0002091;;FF:0000210;;FF:0102424
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|library_id=CNhs13072
|library_id=CNhs13072
|library_id_phase_based=2:CNhs13072
|library_id_phase_based=2:CNhs13072
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10855
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10855
|name=mesothelioma cell line:Mero-84
|name=mesothelioma cell line:Mero-84
|namespace=FANTOM5
|namespace=FANTOM5
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|profile_rnaseq=
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 90: Line 100:
|top_motifs=HOXA9_MEIS1:1.63242599923;NKX3-1:1.47227217076;TEAD1:1.16531608044;ZIC1..3:1.16400689966;NKX3-2:1.02217503507;GLI1..3:0.988277017834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.978645953728;EP300:0.964770130817;HAND1,2:0.958631798094;STAT5{A,B}:0.940950100398;TBP:0.814708819419;TOPORS:0.80417157904;GCM1,2:0.763022889706;TEF:0.748299508797;PPARG:0.745234429867;IKZF1:0.742691606503;LMO2:0.717864968916;ZEB1:0.706605599182;NR6A1:0.701377088672;TFCP2:0.697049060763;E2F1..5:0.6917397809;PAX4:0.689480595169;TP53:0.681531272297;EBF1:0.672546179238;XCPE1{core}:0.649138946284;STAT2,4,6:0.635720846352;ADNP_IRX_SIX_ZHX:0.627874656277;HOX{A5,B5}:0.5920929859;HES1:0.565756603928;MYOD1:0.540045650163;ZNF148:0.505717902141;PAX5:0.474051123456;GFI1B:0.468751963583;T:0.465541709913;TAL1_TCF{3,4,12}:0.463305552512;LEF1_TCF7_TCF7L1,2:0.446546744478;ESRRA:0.441342061113;SNAI1..3:0.402683365134;GFI1:0.401524769545;UFEwm:0.380289161721;RXRA_VDR{dimer}:0.378793925301;ZNF384:0.370692070146;HOX{A6,A7,B6,B7}:0.362855486998;NFE2:0.346245746688;REST:0.342315320176;POU2F1..3:0.331162153339;ZBTB6:0.3051563896;LHX3,4:0.291086946049;RXR{A,B,G}:0.285549725976;TFAP2B:0.271770632993;NFE2L1:0.256742582991;SMAD1..7,9:0.250217301052;MAZ:0.249544331613;CDC5L:0.246570983498;FOXL1:0.231105457021;FOX{I1,J2}:0.22919878205;TLX1..3_NFIC{dimer}:0.199345094852;bHLH_family:0.199229617595;NANOG:0.194819589295;GTF2I:0.190661133857;EVI1:0.183595204633;POU6F1:0.172197756022;NR3C1:0.153808598717;MTE{core}:0.13609992366;ZNF238:0.128014475339;RREB1:0.110717993731;ZNF423:0.110132496756;ALX1:0.108490681532;NFE2L2:0.108326743118;KLF4:0.0865077915575;ALX4:0.0806913539188;CEBPA,B_DDIT3:0.0798182446184;MYBL2:0.0797765345279;POU5F1:0.0767406378893;TFAP4:0.0578327713658;NR5A1,2:0.0458262955099;TFAP2{A,C}:0.0428187564052;FOS_FOS{B,L1}_JUN{B,D}:0.0398267766861;HSF1,2:0.0343648664445;FOXQ1:0.0166476671006;TBX4,5:0.00471814612915;HIC1:-0.00333164196446;POU1F1:-0.00753565095477;BACH2:-0.010253626584;HNF1A:-0.0151852184795;RORA:-0.019204193468;HLF:-0.0302930038873;ELK1,4_GABP{A,B1}:-0.0325863014683;FOXM1:-0.0494996999308;SP1:-0.062908135558;MAFB:-0.0632879020316;PAX8:-0.0641724564315;CRX:-0.0695056719373;ARID5B:-0.0851609421892;GATA4:-0.0937598380689;MZF1:-0.116672048961;JUN:-0.123167227205;HNF4A_NR2F1,2:-0.136245617807;SRF:-0.139736911481;AIRE:-0.150211516712;MED-1{core}:-0.15656161521;PITX1..3:-0.156725818066;PRRX1,2:-0.162512663742;EGR1..3:-0.181078971796;SOX5:-0.181484765725;SPZ1:-0.187509319079;NKX2-3_NKX2-5:-0.201482458236;GTF2A1,2:-0.203553739438;NFY{A,B,C}:-0.205019528698;VSX1,2:-0.211735846958;ONECUT1,2:-0.214056672093;TLX2:-0.21532717069;MEF2{A,B,C,D}:-0.217113406042;CDX1,2,4:-0.223365456465;TFDP1:-0.229581871499;FOSL2:-0.231647159932;SOX{8,9,10}:-0.232400079758;PAX1,9:-0.247342535173;NKX6-1,2:-0.25101491047;RBPJ:-0.254472900275;GATA6:-0.26052852429;GZF1:-0.267700598245;POU3F1..4:-0.273246875786;MTF1:-0.282559713158;RFX1:-0.309168162021;EN1,2:-0.317939190323;FOXP3:-0.337423327738;NFKB1_REL_RELA:-0.351675411191;HMX1:-0.355527989759;PATZ1:-0.364276948975;STAT1,3:-0.377300468335;SOX2:-0.381349705069;MYB:-0.388788436257;PAX6:-0.39278144428;NRF1:-0.393016963783;HMGA1,2:-0.399437234087;ZNF143:-0.407585193617;NR1H4:-0.41299000471;OCT4_SOX2{dimer}:-0.416034066575;SPIB:-0.422363308189;ESR1:-0.443883278214;PRDM1:-0.461074495327;MYFfamily:-0.465563826728;FOXD3:-0.467541586372;ZBTB16:-0.468656252688;AR:-0.474229355857;HOX{A4,D4}:-0.480092032913;PBX1:-0.493102894436;FOX{F1,F2,J1}:-0.506485478549;RFX2..5_RFXANK_RFXAP:-0.535722305696;ETS1,2:-0.547621768289;YY1:-0.564730075454;IRF7:-0.60604583137;PAX3,7:-0.609625627401;NKX2-1,4:-0.619576339058;NKX2-2,8:-0.620054077444;NFATC1..3:-0.655454267032;NFIX:-0.655729018811;ELF1,2,4:-0.660681711813;PAX2:-0.678158736736;DBP:-0.681387506877;XBP1:-0.683622511794;RUNX1..3:-0.693634419768;ATF5_CREB3:-0.696057303346;IRF1,2:-0.714148575831;FOXP1:-0.717011347369;ATF4:-0.725378285983;SPI1:-0.740509505005;IKZF2:-0.763435283171;BREu{core}:-0.764213473642;NFIL3:-0.804200753454;FOXA2:-0.804257487996;DMAP1_NCOR{1,2}_SMARC:-0.858720520459;NHLH1,2:-0.952512651715;HBP1_HMGB_SSRP1_UBTF:-0.957002398572;ATF2:-0.976319238845;CUX2:-0.985449574573;FOXO1,3,4:-1.08020633018;FOXN1:-1.14166371326;TGIF1:-1.16462197061;NANOG{mouse}:-1.2029097156;FOX{D1,D2}:-1.20365546913;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.20483952148;SREBF1,2:-1.2158075287;ATF6:-1.24242210416;SOX17:-1.25191250343;BPTF:-1.312948757;AHR_ARNT_ARNT2:-1.37277631505;CREB1:-1.57340005806;PDX1:-1.57975584446;HIF1A:-1.77082526294;ZFP161:-1.87598793966
|top_motifs=HOXA9_MEIS1:1.63242599923;NKX3-1:1.47227217076;TEAD1:1.16531608044;ZIC1..3:1.16400689966;NKX3-2:1.02217503507;GLI1..3:0.988277017834;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.978645953728;EP300:0.964770130817;HAND1,2:0.958631798094;STAT5{A,B}:0.940950100398;TBP:0.814708819419;TOPORS:0.80417157904;GCM1,2:0.763022889706;TEF:0.748299508797;PPARG:0.745234429867;IKZF1:0.742691606503;LMO2:0.717864968916;ZEB1:0.706605599182;NR6A1:0.701377088672;TFCP2:0.697049060763;E2F1..5:0.6917397809;PAX4:0.689480595169;TP53:0.681531272297;EBF1:0.672546179238;XCPE1{core}:0.649138946284;STAT2,4,6:0.635720846352;ADNP_IRX_SIX_ZHX:0.627874656277;HOX{A5,B5}:0.5920929859;HES1:0.565756603928;MYOD1:0.540045650163;ZNF148:0.505717902141;PAX5:0.474051123456;GFI1B:0.468751963583;T:0.465541709913;TAL1_TCF{3,4,12}:0.463305552512;LEF1_TCF7_TCF7L1,2:0.446546744478;ESRRA:0.441342061113;SNAI1..3:0.402683365134;GFI1:0.401524769545;UFEwm:0.380289161721;RXRA_VDR{dimer}:0.378793925301;ZNF384:0.370692070146;HOX{A6,A7,B6,B7}:0.362855486998;NFE2:0.346245746688;REST:0.342315320176;POU2F1..3:0.331162153339;ZBTB6:0.3051563896;LHX3,4:0.291086946049;RXR{A,B,G}:0.285549725976;TFAP2B:0.271770632993;NFE2L1:0.256742582991;SMAD1..7,9:0.250217301052;MAZ:0.249544331613;CDC5L:0.246570983498;FOXL1:0.231105457021;FOX{I1,J2}:0.22919878205;TLX1..3_NFIC{dimer}:0.199345094852;bHLH_family:0.199229617595;NANOG:0.194819589295;GTF2I:0.190661133857;EVI1:0.183595204633;POU6F1:0.172197756022;NR3C1:0.153808598717;MTE{core}:0.13609992366;ZNF238:0.128014475339;RREB1:0.110717993731;ZNF423:0.110132496756;ALX1:0.108490681532;NFE2L2:0.108326743118;KLF4:0.0865077915575;ALX4:0.0806913539188;CEBPA,B_DDIT3:0.0798182446184;MYBL2:0.0797765345279;POU5F1:0.0767406378893;TFAP4:0.0578327713658;NR5A1,2:0.0458262955099;TFAP2{A,C}:0.0428187564052;FOS_FOS{B,L1}_JUN{B,D}:0.0398267766861;HSF1,2:0.0343648664445;FOXQ1:0.0166476671006;TBX4,5:0.00471814612915;HIC1:-0.00333164196446;POU1F1:-0.00753565095477;BACH2:-0.010253626584;HNF1A:-0.0151852184795;RORA:-0.019204193468;HLF:-0.0302930038873;ELK1,4_GABP{A,B1}:-0.0325863014683;FOXM1:-0.0494996999308;SP1:-0.062908135558;MAFB:-0.0632879020316;PAX8:-0.0641724564315;CRX:-0.0695056719373;ARID5B:-0.0851609421892;GATA4:-0.0937598380689;MZF1:-0.116672048961;JUN:-0.123167227205;HNF4A_NR2F1,2:-0.136245617807;SRF:-0.139736911481;AIRE:-0.150211516712;MED-1{core}:-0.15656161521;PITX1..3:-0.156725818066;PRRX1,2:-0.162512663742;EGR1..3:-0.181078971796;SOX5:-0.181484765725;SPZ1:-0.187509319079;NKX2-3_NKX2-5:-0.201482458236;GTF2A1,2:-0.203553739438;NFY{A,B,C}:-0.205019528698;VSX1,2:-0.211735846958;ONECUT1,2:-0.214056672093;TLX2:-0.21532717069;MEF2{A,B,C,D}:-0.217113406042;CDX1,2,4:-0.223365456465;TFDP1:-0.229581871499;FOSL2:-0.231647159932;SOX{8,9,10}:-0.232400079758;PAX1,9:-0.247342535173;NKX6-1,2:-0.25101491047;RBPJ:-0.254472900275;GATA6:-0.26052852429;GZF1:-0.267700598245;POU3F1..4:-0.273246875786;MTF1:-0.282559713158;RFX1:-0.309168162021;EN1,2:-0.317939190323;FOXP3:-0.337423327738;NFKB1_REL_RELA:-0.351675411191;HMX1:-0.355527989759;PATZ1:-0.364276948975;STAT1,3:-0.377300468335;SOX2:-0.381349705069;MYB:-0.388788436257;PAX6:-0.39278144428;NRF1:-0.393016963783;HMGA1,2:-0.399437234087;ZNF143:-0.407585193617;NR1H4:-0.41299000471;OCT4_SOX2{dimer}:-0.416034066575;SPIB:-0.422363308189;ESR1:-0.443883278214;PRDM1:-0.461074495327;MYFfamily:-0.465563826728;FOXD3:-0.467541586372;ZBTB16:-0.468656252688;AR:-0.474229355857;HOX{A4,D4}:-0.480092032913;PBX1:-0.493102894436;FOX{F1,F2,J1}:-0.506485478549;RFX2..5_RFXANK_RFXAP:-0.535722305696;ETS1,2:-0.547621768289;YY1:-0.564730075454;IRF7:-0.60604583137;PAX3,7:-0.609625627401;NKX2-1,4:-0.619576339058;NKX2-2,8:-0.620054077444;NFATC1..3:-0.655454267032;NFIX:-0.655729018811;ELF1,2,4:-0.660681711813;PAX2:-0.678158736736;DBP:-0.681387506877;XBP1:-0.683622511794;RUNX1..3:-0.693634419768;ATF5_CREB3:-0.696057303346;IRF1,2:-0.714148575831;FOXP1:-0.717011347369;ATF4:-0.725378285983;SPI1:-0.740509505005;IKZF2:-0.763435283171;BREu{core}:-0.764213473642;NFIL3:-0.804200753454;FOXA2:-0.804257487996;DMAP1_NCOR{1,2}_SMARC:-0.858720520459;NHLH1,2:-0.952512651715;HBP1_HMGB_SSRP1_UBTF:-0.957002398572;ATF2:-0.976319238845;CUX2:-0.985449574573;FOXO1,3,4:-1.08020633018;FOXN1:-1.14166371326;TGIF1:-1.16462197061;NANOG{mouse}:-1.2029097156;FOX{D1,D2}:-1.20365546913;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.20483952148;SREBF1,2:-1.2158075287;ATF6:-1.24242210416;SOX17:-1.25191250343;BPTF:-1.312948757;AHR_ARNT_ARNT2:-1.37277631505;CREB1:-1.57340005806;PDX1:-1.57975584446;HIF1A:-1.77082526294;ZFP161:-1.87598793966
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10855-111F9;search_select_hide=table117:FF:10855-111F9
}}
}}

Latest revision as of 15:10, 3 June 2020

Name:mesothelioma cell line:Mero-84
Species:Human (Homo sapiens)
Library ID:CNhs13072
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemesothelium
dev stageNA
sexmale
ageunknown
cell typemesothelial cell
cell lineMero-84
companyECACC
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005214
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13072 CAGE DRX007944 DRR008816
Accession ID Hg19

Library idBAMCTSS
CNhs13072 DRZ000241 DRZ001626
Accession ID Hg38

Library idBAMCTSS
CNhs13072 DRZ011591 DRZ012976
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.00501
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.247
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
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C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13072

Jaspar motifP-value
MA0002.20.597
MA0003.10.26
MA0004.10.324
MA0006.10.044
MA0007.10.864
MA0009.10.328
MA0014.10.84
MA0017.10.598
MA0018.20.00314
MA0019.10.84
MA0024.10.396
MA0025.10.00175
MA0027.11
MA0028.10.541
MA0029.10.782
MA0030.10.359
MA0031.10.00101
MA0035.20.0118
MA0038.10.897
MA0039.20.292
MA0040.10.174
MA0041.10.945
MA0042.10.667
MA0043.11.4671e-5
MA0046.10.647
MA0047.20.11
MA0048.10.317
MA0050.13.24402e-6
MA0051.10.0157
MA0052.10.745
MA0055.10.183
MA0057.10.0901
MA0058.10.103
MA0059.10.759
MA0060.10.453
MA0061.10.778
MA0062.20.0335
MA0065.20.0499
MA0066.10.146
MA0067.15.25629e-4
MA0068.10.319
MA0069.10.887
MA0070.10.836
MA0071.10.251
MA0072.10.935
MA0073.10.926
MA0074.10.549
MA0076.10.0851
MA0077.10.946
MA0078.10.162
MA0079.20.523
MA0080.21.15441e-8
MA0081.10.00279
MA0083.10.932
MA0084.10.019
MA0087.10.652
MA0088.10.208
MA0090.11.38225e-5
MA0091.10.722
MA0092.10.251
MA0093.10.312
MA0099.20.0173
MA0100.10.0674
MA0101.10.223
MA0102.20.923
MA0103.13.98056e-4
MA0104.20.416
MA0105.10.377
MA0106.10.24
MA0107.10.138
MA0108.20.00181
MA0111.10.49
MA0112.20.00462
MA0113.10.584
MA0114.10.31
MA0115.10.77
MA0116.10.0592
MA0117.10.436
MA0119.10.21
MA0122.10.496
MA0124.10.207
MA0125.10.524
MA0131.10.283
MA0135.10.828
MA0136.11.91906e-7
MA0137.20.52
MA0138.20.749
MA0139.10.147
MA0140.10.109
MA0141.10.0437
MA0142.10.777
MA0143.10.7
MA0144.10.823
MA0145.10.0195
MA0146.10.169
MA0147.10.699
MA0148.10.349
MA0149.10.223
MA0150.10.471
MA0152.10.373
MA0153.10.406
MA0154.10.0907
MA0155.10.144
MA0156.12.96698e-4
MA0157.10.0132
MA0159.10.117
MA0160.10.287
MA0162.10.079
MA0163.10.384
MA0164.10.495
MA0258.10.0467
MA0259.10.359



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13072

Novel motifP-value
10.333
100.16
1000.225
1010.172
1020.274
1030.286
1040.712
1050.915
1060.179
1070.0547
1080.773
1090.0539
110.262
1100.0336
1110.961
1120.496
1130.397
1140.764
1150.192
1160.0557
1170.147
1180.724
1190.176
120.828
1200.11
1210.858
1220.607
1230.731
1240.97
1250.0318
1260.635
1270.274
1280.333
1290.298
130.138
1300.226
1310.951
1320.31
1330.155
1340.768
1350.674
1360.469
1370.059
1380.471
1390.323
140.914
1400.66
1410.164
1420.694
1430.482
1440.438
1450.512
1460.155
1470.0606
1480.406
1490.0588
150.344
1500.255
1510.338
1520.0253
1530.988
1540.764
1550.833
1560.197
1570.455
1580.0228
1590.366
160.0813
1600.0172
1610.0266
1620.0181
1630.919
1640.484
1650.976
1660.213
1670.196
1680.466
1690.0429
170.44
180.407
190.434
20.197
200.251
210.349
220.257
230.289
240.49
250.975
260.748
270.233
280.895
290.633
30.593
300.235
310.678
320.193
330.557
340.485
350.788
360.81
370.371
380.564
390.322
40.922
400.0154
410.0341
420.28
430.833
440.238
450.235
460.301
470.308
480.15
490.732
50.886
500.985
510.351
520.464
530.77
540.253
550.141
560.103
570.114
580.747
590.0884
60.745
600.558
610.896
620.684
630.221
640.127
650.513
660.273
670.187
680.125
690.0117
70.347
700.405
710.297
720.679
730.121
740.967
750.988
760.26
770.00253
780.0477
790.627
80.0529
800.645
810.0347
820.0977
830.372
840.64
850.389
860.947
870.0351
880.725
890.0285
90.676
900.109
910.625
920.361
930.65
940.239
950.254
960.625
970.857
980.635
990.00829



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13072


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000222 (mesodermal cell)

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