FF:11584-120F9: Difference between revisions

Latest revision as of 18:10, 4 June 2020

Name:	Hair Follicle Outer Root Sheath Cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12347
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	hair follicle
dev stage	NA
sex	NA
age	NA
cell type	hair follicle, outer root sheath cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	SC2425
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005367

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12347		CAGE		DRX008300		DRR009172

Accession ID Hg19

Library id		BAM		CTSS
CNhs12347		DRZ000597		DRZ001982

Accession ID Hg38

Library id		BAM		CTSS
CNhs12347		DRZ011947		DRZ013332

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.038
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.385
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.574
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0406
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.282
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.016
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.727
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0721
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.158
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.65
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0483
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.117
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.492
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.186
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.236
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.236
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.5
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.5
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.985
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12347

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.484
MA0003.1	MA0003.1	0.208
MA0004.1	MA0004.1	0.695
MA0006.1	MA0006.1	0.507
MA0007.1	MA0007.1	0.111
MA0009.1	MA0009.1	0.22
MA0014.1	MA0014.1	0.808
MA0017.1	MA0017.1	0.135
MA0018.2	MA0018.2	1.49119e-5
MA0019.1	MA0019.1	0.918
MA0024.1	MA0024.1	8.5524e-7
MA0025.1	MA0025.1	2.36407e-4
MA0027.1	MA0027.1	0.626
MA0028.1	MA0028.1	0.2
MA0029.1	MA0029.1	0.208
MA0030.1	MA0030.1	0.324
MA0031.1	MA0031.1	0.643
MA0035.2	MA0035.2	0.187
MA0038.1	MA0038.1	0.0355
MA0039.2	MA0039.2	0.658
MA0040.1	MA0040.1	0.369
MA0041.1	MA0041.1	0.498
MA0042.1	MA0042.1	0.468
MA0043.1	MA0043.1	1.87645e-4
MA0046.1	MA0046.1	0.716
MA0047.2	MA0047.2	0.946
MA0048.1	MA0048.1	0.447
MA0050.1	MA0050.1	0.12
MA0051.1	MA0051.1	0.652
MA0052.1	MA0052.1	0.491
MA0055.1	MA0055.1	0.438
MA0057.1	MA0057.1	0.255
MA0058.1	MA0058.1	0.881
MA0059.1	MA0059.1	0.346
MA0060.1	MA0060.1	2.86184e-8
MA0061.1	MA0061.1	0.612
MA0062.2	MA0062.2	6.07743e-4
MA0065.2	MA0065.2	0.0224
MA0066.1	MA0066.1	0.0415
MA0067.1	MA0067.1	0.0486
MA0068.1	MA0068.1	0.172
MA0069.1	MA0069.1	0.114
MA0070.1	MA0070.1	0.107
MA0071.1	MA0071.1	0.349
MA0072.1	MA0072.1	0.95
MA0073.1	MA0073.1	0.874
MA0074.1	MA0074.1	0.131
MA0076.1	MA0076.1	0.0853
MA0077.1	MA0077.1	0.191
MA0078.1	MA0078.1	0.759
MA0079.2	MA0079.2	0.703
MA0080.2	MA0080.2	1.02574e-5
MA0081.1	MA0081.1	0.125
MA0083.1	MA0083.1	0.224
MA0084.1	MA0084.1	0.365
MA0087.1	MA0087.1	0.425
MA0088.1	MA0088.1	0.176
MA0090.1	MA0090.1	0.00145
MA0091.1	MA0091.1	0.0239
MA0092.1	MA0092.1	0.0801
MA0093.1	MA0093.1	0.603
MA0099.2	MA0099.2	0.218
MA0100.1	MA0100.1	0.371
MA0101.1	MA0101.1	0.188
MA0102.2	MA0102.2	0.35
MA0103.1	MA0103.1	0.0676
MA0104.2	MA0104.2	0.935
MA0105.1	MA0105.1	0.0363
MA0106.1	MA0106.1	0.00824
MA0107.1	MA0107.1	0.133
MA0108.2	MA0108.2	0.778
MA0111.1	MA0111.1	0.986
MA0112.2	MA0112.2	1.20142e-4
MA0113.1	MA0113.1	0.00499
MA0114.1	MA0114.1	0.0647
MA0115.1	MA0115.1	0.0954
MA0116.1	MA0116.1	0.0255
MA0117.1	MA0117.1	0.963
MA0119.1	MA0119.1	0.0246
MA0122.1	MA0122.1	0.989
MA0124.1	MA0124.1	0.343
MA0125.1	MA0125.1	0.115
MA0131.1	MA0131.1	0.155
MA0135.1	MA0135.1	0.923
MA0136.1	MA0136.1	1.17665e-6
MA0137.2	MA0137.2	0.569
MA0138.2	MA0138.2	0.268
MA0139.1	MA0139.1	0.382
MA0140.1	MA0140.1	0.502
MA0141.1	MA0141.1	0.101
MA0142.1	MA0142.1	0.931
MA0143.1	MA0143.1	0.125
MA0144.1	MA0144.1	0.0899
MA0145.1	MA0145.1	0.224
MA0146.1	MA0146.1	0.114
MA0147.1	MA0147.1	0.91
MA0148.1	MA0148.1	0.41
MA0149.1	MA0149.1	0.77
MA0150.1	MA0150.1	0.408
MA0152.1	MA0152.1	0.301
MA0153.1	MA0153.1	0.414
MA0154.1	MA0154.1	0.0865
MA0155.1	MA0155.1	0.299
MA0156.1	MA0156.1	2.30297e-5
MA0157.1	MA0157.1	0.197
MA0159.1	MA0159.1	0.0727
MA0160.1	MA0160.1	0.957
MA0162.1	MA0162.1	0.0946
MA0163.1	MA0163.1	9.92678e-5
MA0164.1	MA0164.1	0.835
MA0258.1	MA0258.1	0.0381
MA0259.1	MA0259.1	0.72

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12347

Novel motif	Logo	P-value
1	1	0.122
10	10	0.328
100	100	0.558
101	101	0.628
102	102	0.422
103	103	0.0811
104	104	0.455
105	105	0.511
106	106	0.0697
107	107	0.196
108	108	0.225
109	109	0.0287
11	11	0.0932
110	110	0.122
111	111	0.493
112	112	0.232
113	113	0.135
114	114	0.0139
115	115	0.737
116	116	0.107
117	117	0.398
118	118	0.45
119	119	0.629
12	12	0.52
120	120	0.117
121	121	0.706
122	122	0.228
123	123	0.079
124	124	0.469
125	125	0.166
126	126	0.349
127	127	0.326
128	128	0.0283
129	129	0.89
13	13	0.777
130	130	0.897
131	131	0.983
132	132	0.285
133	133	0.441
134	134	0.0876
135	135	0.431
136	136	0.724
137	137	0.15
138	138	0.937
139	139	0.0189
14	14	0.951
140	140	0.725
141	141	0.757
142	142	0.144
143	143	0.252
144	144	0.378
145	145	0.178
146	146	0.386
147	147	0.0954
148	148	0.0934
149	149	6.81098e-4
15	15	0.628
150	150	0.521
151	151	0.328
152	152	0.198
153	153	0.227
154	154	0.537
155	155	0.303
156	156	0.736
157	157	0.904
158	158	0.0511
159	159	0.206
16	16	0.0259
160	160	0.0522
161	161	0.416
162	162	0.224
163	163	0.833
164	164	0.0889
165	165	0.965
166	166	0.724
167	167	0.89
168	168	0.492
169	169	0.0287
17	17	0.291
18	18	0.137
19	19	0.0264
2	2	0.398
20	20	0.642
21	21	0.0205
22	22	0.0574
23	23	0.234
24	24	0.857
25	25	0.91
26	26	0.0331
27	27	0.205
28	28	0.172
29	29	0.122
3	3	0.0669
30	30	0.518
31	31	0.459
32	32	1.39104e-7
33	33	0.343
34	34	0.965
35	35	0.346
36	36	0.922
37	37	0.014
38	38	0.674
39	39	0.444
4	4	0.218
40	40	0.711
41	41	0.738
42	42	0.575
43	43	0.123
44	44	0.252
45	45	0.786
46	46	0.0505
47	47	0.206
48	48	0.4
49	49	0.173
5	5	0.489
50	50	0.628
51	51	0.412
52	52	0.42
53	53	0.784
54	54	0.353
55	55	0.00697
56	56	0.347
57	57	0.406
58	58	0.966
59	59	0.0512
6	6	0.434
60	60	0.361
61	61	0.826
62	62	0.491
63	63	0.187
64	64	0.473
65	65	0.0725
66	66	0.278
67	67	0.744
68	68	0.495
69	69	0.0908
7	7	0.987
70	70	0.042
71	71	0.0815
72	72	0.543
73	73	0.0558
74	74	0.279
75	75	0.388
76	76	0.806
77	77	0.028
78	78	0.991
79	79	0.0147
8	8	0.0266
80	80	0.353
81	81	0.409
82	82	0.0649
83	83	0.736
84	84	0.35
85	85	0.0483
86	86	0.792
87	87	0.0989
88	88	0.154
89	89	0.0184
9	9	0.178
90	90	0.961
91	91	0.46
92	92	0.0185
93	93	0.913
94	94	0.136
95	95	0.131
96	96	0.74
97	97	0.686
98	98	0.597
99	99	0.0245

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12347

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000075 human outer root sheath cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)
0002559 (hair follicle cell)
0002561 (outer root sheath cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0002073 (hair follicle)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0005933 (hair root sheath)
0005942 (hair outer root sheath)
0002416 (integumental system)
0005932 (bulb of hair follicle)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000072 (human hair follicle cell sample)
0000001 (sample)
0000075 (human outer root sheath cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005367
-|accession_numbers=CAGE;DRX008300;DRR009172;DRZ000597;DRZ001982
+|accession_numbers=CAGE;DRX008300;DRR009172;DRZ000597;DRZ001982;DRZ011947;DRZ013332
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0002073,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0005933,UBERON:0005942,UBERON:0002416,UBERON:0005932
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000362,CL:0002159,CL:0000255,CL:0002077,CL:0002559,CL:0002561
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr15:42749722..42749739,-!p2@ZFP106!1.83!116.94!ZFP106;;chr1:170632285..170632309,+!p1@PRRX1!1.62!46.20!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!1.60!119.11!TWIST2;;chr2:19558373..19558392,-!p1@OSR1!1.54!90.23!OSR1;;chr7:19157248..19157268,-!p1@TWIST1!1.51!85.18!TWIST1;;chr19:13134772..13134822,+!p2@NFIX!1.42!36.82!NFIX;;chr15:57511609..57511651,+!p2@TCF12!1.38!38.26!TCF12;;chr8:49833948..49833973,-!p2@SNAI2!1.33!125.61!SNAI2;;chr6:45296048..45296082,+!p1@RUNX2!1.33!23.10!RUNX2;;chr2:96012397..96012417,+!p3@KCNIP3!1.25!16.60!KCNIP3;;chr1:170633348..170633399,+!p2@PRRX1!1.24!22.38!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!1.23!27.43!TWIST2;;chr12:54402745..54402788,+!p1@HOXC8!1.21!15.16!HOXC8;;chr2:176994408..176994492,+!p1@HOXD8!1.19!14.44!HOXD8;;chr19:46801639..46801699,+!p1@HIF3A!1.19!14.44!HIF3A;;chr11:65687362..65687436,+!p3@DRAP1!1.17!62.80!DRAP1;;chr14:61116183..61116208,-!p1@SIX1!1.17!51.98!SIX1;;chr3:141105705..141105770,+!p4@ZBTB38!1.15!15.88!ZBTB38;;chr2:95963052..95963106,+!p1@KCNIP3!1.15!12.99!KCNIP3;;chr2:96012757..96012779,+!p8@KCNIP3!1.15!12.99!KCNIP3;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.72!PRRX1;;chr3:147139053..147139112,+!p5@ZIC1!1.12!12.27!ZIC1;;chr7:35293685..35293718,-!p1@TBX20!1.12!12.27!TBX20;;chr11:46299199..46299233,+!p1@CREB3L1!1.10!59.92!CREB3L1;;chr4:174451370..174451387,-!p1@HAND2!1.10!11.55!HAND2;;chr1:170633262..170633285,+!p3@PRRX1!1.09!12.99!PRRX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.08!18.77!CREB3L1;;chr6:134210243..134210257,+!p1@TCF21!1.07!10.83!TCF21;;chr5:158526917..158526932,-!p1@EBF1!1.05!25.99!EBF1;;chr11:65686802..65686818,+!p6@DRAP1!1.05!18.05!DRAP1;;chr6:108977520..108977534,+!p7@FOXO3!1.05!10.11!FOXO3;;chr2:119605214..119605230,-!p1@EN1!1.05!10.11!EN1;;chr11:113930425..113930471,+!p1@ZBTB16!1.04!14.44!ZBTB16;;chr3:157823517..157823562,-!p1@SHOX2!1.04!10.83!SHOX2;;chrX:106960180..106960197,-!p2@TSC22D3!1.03!37.54!TSC22D3;;chr7:19157043..19157088,-!p2@TWIST1!1.03!24.54!TWIST1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.02!9.38!RUNX1T1;;chr3:141121847..141121868,+!p5@ZBTB38!1.00!13.72!ZBTB38;;chr8:49833978..49833996,-!p1@SNAI2!0.99!185.52!SNAI2;;chr17:46675420..46675465,-!p3@HOXB6!0.99!10.11!HOXB6;;chr11:46299443..46299459,+!p4@CREB3L1!0.99!8.66!CREB3L1;;chr12:54393880..54393962,+!p1@HOXC9!0.99!8.66!HOXC9;;chr3:147127142..147127168,+!p1@ZIC1!0.99!8.66!ZIC1;;chr3:147111231..147111281,+!p3@ZIC1!0.95!7.94!ZIC1;;chr3:147127177..147127194,+!p2@ZIC1!0.95!7.94!ZIC1;;chr1:170632250..170632277,+!p7@PRRX1!0.95!7.94!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.95!7.94!HOXC5;;chr8:93074848..93074871,-!p3@RUNX1T1!0.95!7.94!RUNX1T1;;chr19:45971246..45971265,+!p1@FOSB!0.93!145.82!FOSB;;chr2:96012353..96012378,+!p4@KCNIP3!0.91!7.22!KCNIP3;;chr16:31076332..31076388,-!p3@ZNF668!0.91!7.22!ZNF668;;chr13:45151259..45151326,-!p2@TSC22D1!0.89!42.59!TSC22D1;;chrX:106960285..106960299,-!p1@TSC22D3!0.88!186.97!TSC22D3;;chr6:85474299..85474324,-!p1@TBX18!0.88!12.27!TBX18;;chr19:13136130..13136165,+!p6@NFIX!0.87!8.66!NFIX;;chr1:23696448..23696453,-!p5@ZNF436!0.87!7.94!ZNF436;;chr1:170633058..170633084,+!p5@PRRX1!0.87!6.50!PRRX1;;chr15:57511589..57511608,+!p4@TCF12!0.87!6.50!TCF12;;chr11:44331576..44331650,-!p1@ALX4!0.87!6.50!ALX4;;chr3:138665937..138665968,-!p1@FOXL2!0.87!6.50!FOXL2;;chr14:24837368..24837401,+!p1@NFATC4!0.86!15.16!NFATC4;;chr17:17726907..17726958,-!p2@SREBF1!0.84!38.98!SREBF1;;chr19:13134457..13134462,+!p5@NFIX!0.84!10.83!NFIX;;chr9:132427972..132428056,+!p1@PRRX2!0.84!7.94!PRRX2;;chr10:63809013..63809041,+!p3@ARID5B!0.83!34.65!ARID5B;;chr10:77161533..77161546,-!p2@ZNF503!0.83!24.54!ZNF503;;chr10:45495946..45495976,+!p2@ZNF22!0.83!5.78!ZNF22;;chr9:132427883..132427951,+!p2@PRRX2!0.83!5.78!PRRX2;;chr15:67391010..67391046,+!p13@SMAD3!0.83!5.78!SMAD3;;chr11:65687158..65687216,+!p4@DRAP1!0.82!34.65!DRAP1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.80!412.92!TAX1BP3;;chr3:178789522..178789564,-!p2@ZMAT3!0.79!41.15!ZMAT3;;chr6:85473156..85473210,-!p2@TBX18!0.79!6.50!TBX18;;chr5:92918956..92918969,+!p4@NR2F1!0.79!5.78!NR2F1;;chr5:321810..321877,+!p1@AHRR!0.78!17.33!AHRR;;chr20:55204351..55204377,+!p1@TFAP2C!0.78!6.50!TFAP2C;;chr11:47279248..47279264,+!p3@NR1H3!0.78!5.78!NR1H3;;chr12:54394309..54394336,+!p2@HOXC9!0.78!5.05!HOXC9;;chr12:54447637..54447659,+!p4@HOXC4!0.78!5.05!HOXC4;;chr1:170632137..170632172,+!p10@PRRX1!0.78!5.05!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.78!5.05!PRRX1;;chrY:21906594..21906622,-!p1@KDM5D!0.78!5.05!KDM5D;;chr10:31607702..31607755,+!p3@ZEB1!0.77!5.78!ZEB1;;chr17:3571887..3571918,-!p2@TAX1BP3!0.76!58.47!TAX1BP3;;chr12:53614115..53614154,-!p1@RARG!0.76!28.15!RARG;;chr17:46621937..46621966,-!p2@HOXB2!0.76!13.72!HOXB2;;chr1:23696308..23696339,-!p2@ZNF436!0.76!10.83!ZNF436;;chr17:46688334..46688385,-!p1@HOXB7!0.76!7.22!HOXB7;;chr1:158985469..158985489,+!p7@IFI16!0.76!5.78!IFI16;;chr20:39317868..39317884,-!p1@MAFB!0.74!59.92!MAFB;;chr15:42743341..42743377,-!p3@ZFP106!0.74!7.94!ZFP106;;chr21:36421535..36421610,-!p2@RUNX1!0.73!17.33!RUNX1;;chr9:73029219..73029289,-!p2@KLF9!0.73!14.44!KLF9;;chr2:28618532..28618610,+!p4@FOSL2!0.73!7.94!FOSL2;;chr14:61116168..61116180,-!p2@SIX1!0.73!5.05!SIX1;;chr12:54394416..54394467,+!p5@HOXC9!0.73!4.33!HOXC9;;chr2:119604456..119604501,-!p2@EN1!0.73!4.33!EN1;;chr2:223163706..223163730,-!p1@PAX3!0.73!4.33!PAX3;;chr2:43454125..43454146,-!p2@ZFP36L2!0.73!4.33!ZFP36L2;;chr2:96012298..96012317,+!p6@KCNIP3!0.73!4.33!KCNIP3;;chr3:181429704..181429722,+!p1@SOX2!0.73!4.33!SOX2;;chr19:47523058..47523114,+!p1@NPAS1!0.73!4.33!NPAS1;;chr6:34204921..34204939,+!p3@HMGA1!0.72!142.93!HMGA1;;chr1:158969752..158969780,+!p6@IFI16!0.72!7.94!IFI16;;chr10:77161650..77161661,-!p4@ZNF503!0.69!5.78!ZNF503;;chr19:58987786..58987805,+!p3@ZNF446!0.68!5.78!ZNF446;;chr7:44143997..44144008,+!p3@AEBP1!0.68!5.05!AEBP1;;chr22:39917189..39917207,+!p5@ATF4!0.68!4.33!ATF4;;chr5:178368186..178368238,+!p1@ZNF454!0.67!7.22!ZNF454;;chr11:12696071..12696086,+!p3@TEAD1!0.67!5.05!TEAD1;;chr17:40440481..40440550,+!p1@STAT5A!0.66!29.60!STAT5A;;chr5:92918919..92918942,+!p1@NR2F1!0.66!18.05!NR2F1;;chr5:158526459..158526481,-!p2@EBF1!0.66!5.05!EBF1;;chr5:2751762..2751784,-!p1@IRX2!0.66!3.61!IRX2;;chr17:46675586..46675600,-!p6@HOXB6!0.66!3.61!HOXB6;;chr17:7387459..7387470,-!p10@ZBTB4!0.66!3.61!ZBTB4;;chr19:13135386..13135435,+!p4@NFIX!0.66!3.61!NFIX;;chr19:13135582..13135600,+!p3@NFIX!0.66!3.61!NFIX;;chr3:147111198..147111225,+!p4@ZIC1!0.66!3.61!ZIC1;;chr19:9811125..9811144,-!p2@ZNF812!0.66!3.61!ZNF812;;chr11:113930401..113930422,+!p3@ZBTB16!0.66!3.61!ZBTB16;;chr5:137804484..137804498,+!p2@EGR1!0.65!15.88!EGR1;;chr17:59477233..59477263,+!p1@TBX2!0.65!12.27!TBX2;;chr17:61919985..61920012,-!p3@SMARCD2!0.65!9.38!SMARCD2;;chr12:48298765..48298783,-!p2@VDR!0.65!7.94!VDR;;chr12:10865870..10865888,-!p6@CSDA!0.65!5.05!CSDA;;chr7:100076723..100076737,-!p3@TSC22D4!0.64!5.78!TSC22D4;;chr12:54447599..54447630,+!p3@HOXC4!0.64!4.33!HOXC4;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.64!3.61!GLIS1;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.63!225.23!PCBP4;;chr10:77161504..77161530,-!p1@ZNF503!0.63!51.25!ZNF503;;chr21:47063625..47063658,+!p1@PCBP3!0.63!16.60!PCBP3;;chr11:113930291..113930339,+!p2@ZBTB16!0.63!5.78!ZBTB16;;chrX:66763856..66763896,+!p1@AR!0.63!5.05!AR;;chr11:65687222..65687240,+!p7@DRAP1!0.63!4.33!DRAP1;;chr11:706938..707008,-!p3@DEAF1!0.63!4.33!DEAF1;;chr11:707063..707088,-!p4@DEAF1!0.63!4.33!DEAF1;;chr9:73028814..73028895,-!p1@KLF9!0.62!37.54!KLF9;;chr17:17723626..17723663,-!p4@SREBF1!0.62!7.22!SREBF1;;chr20:39946400..39946423,-!p3@ZHX3!0.62!6.50!ZHX3;;chr17:46655704..46655718,-!p2@HOXB4!0.62!5.05!HOXB4;;chr9:77112244..77112262,+!p1@RORB!0.62!3.61!RORB;;chr6:108881012..108881034,+!p3@FOXO3!0.61!12.99!FOXO3;;chr1:158979872..158979898,+!p3@IFI16!0.61!10.83!IFI16;;chr3:12329358..12329393,+!p3@PPARG!0.61!8.66!PPARG;;chr1:158985493..158985535,+!p4@IFI16!0.61!5.05!IFI16;;chr19:13136241..13136258,+!p7@NFIX!0.61!4.33!NFIX;;chr2:46612334..46612349,+!p6@EPAS1!0.61!4.33!EPAS1;;chr2:231084820..231084836,-!p5@SP110!0.61!3.61!SP110;;chr15:35280863..35280908,-!p3@ZNF770!0.61!3.61!ZNF770;;chr8:48650715..48650735,-!p1@CEBPD!0.60!466.33!CEBPD;;chr14:75745523..75745537,+!p1@FOS!0.60!437.46!FOS;;chr7:44143925..44143970,+!p1@AEBP1!0.60!81.57!AEBP1;;chr13:41240717..41240735,-!p2@FOXO1!0.60!24.54!FOXO1;;chr15:37390482..37390572,-!p7@MEIS2!0.60!4.33!MEIS2;;chr5:43067636..43067674,+!p6@ZNF131!0.60!4.33!ZNF131;;chr2:214015111..214015179,-!p1@IKZF2!0.59!5.78!IKZF2;;chrX:106960249..106960260,-!p5@TSC22D3!0.59!5.05!TSC22D3;;chr9:73028786..73028797,-!p11@KLF9!0.59!2.89!KLF9;;chr2:85981107..85981120,+!p3@ATOH8!0.59!2.89!ATOH8;;chr2:95963120..95963136,+!p2@KCNIP3!0.59!2.89!KCNIP3;;chr3:21792682..21792720,-!p1@ZNF385D!0.59!2.89!ZNF385D;;chr4:174451350..174451363,-!p3@HAND2!0.59!2.89!HAND2;;chr19:9609272..9609297,-!p1@ZNF560!0.59!2.89!ZNF560;;chr1:170632683..170632696,+!p12@PRRX1!0.59!2.89!PRRX1;;chr11:46333934..46333963,+!p5@CREB3L1!0.59!2.89!CREB3L1;;chr12:54402790..54402805,+!p2@HOXC8!0.59!2.89!HOXC8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.59!2.89!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!0.59!2.89!HOXC6;;chr12:66218904..66218913,+!p11@HMGA2!0.59!2.89!HMGA2;;chr5:174151612..174151633,+!p2@MSX2!0.59!2.89!MSX2;;chr6:152011654..152011682,+!p1@ESR1!0.59!2.89!ESR1;;chr8:93115274..93115323,-!p4@RUNX1T1!0.59!2.89!RUNX1T1;;chr16:86612320..86612394,+!p1@FOXL1!0.59!2.89!FOXL1;;chr17:40440446..40440464,+!p5@STAT5A!0.59!2.89!STAT5A;;chr17:46675469..46675481,-!p4@HOXB6!0.59!2.89!HOXB6;;chr6:34204672..34204692,+!p1@HMGA1!0.58!390.54!HMGA1;;chr3:187463179..187463201,-!p2@BCL6!0.58!13.72!BCL6;;chr5:34929947..34930005,+!p3@DNAJC21!0.58!9.38!DNAJC21;;chr3:12329397..12329433,+!p2@PPARG!0.58!7.22!PPARG;;chr17:46622070..46622109,-!p1@HOXB2!0.58!7.22!HOXB2;;chr7:44143978..44143989,+!p2@AEBP1!0.58!5.78!AEBP1;;chr17:61919812..61919833,-!p6@SMARCD2!0.57!3.61!SMARCD2;;chrX:106960221..106960236,-!p3@TSC22D3!0.56!8.66!TSC22D3;;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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000362;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002559;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002561;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
 |ffid_belonging_in_development=CL:0000221
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor2.CNhs12347.11584-120F9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor2.CNhs12347.11584-120F9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor2.CNhs12347.11584-120F9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor2.CNhs12347.11584-120F9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hair%2520Follicle%2520Outer%2520Root%2520Sheath%2520Cells%252c%2520donor2.CNhs12347.11584-120F9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11584-120F9
 |is_a=EFO:0002091;;FF:0000075
 |is_obsolete=
 |library_id=CNhs12347
-|library_id_phase_based=1:CNhs12347
+|library_id_phase_based=2:CNhs12347
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11584
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11584
 |name=Hair Follicle Outer Root Sheath Cells, donor2
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12347,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11584-120F9;search_select_hide=table117:FF:11584-120F9
 }}

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FF:11584-120F9: Difference between revisions

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Latest revision as of 18:10, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0