FF:11409-118E5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005994 | ||
|accession_numbers=CAGE;DRX008382;DRR009254;DRZ000679;DRZ002064 | |accession_numbers=CAGE;DRX008382;DRR009254;DRZ000679;DRZ002064;DRZ012029;DRZ013414 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004905,UBERON:0011135,UBERON:0000075,UBERON:0002216,UBERON:0004765,UBERON:0011134,UBERON:0002209,UBERON:0002213,UBERON:0000982,UBERON:0010317,UBERON:0007844,UBERON:0002242,UBERON:0002204,UBERON:0001434,UBERON:0004770,UBERON:0011138,UBERON:0001130,UBERON:0001066,UBERON:0001468 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0011216,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004905,UBERON:0011135,UBERON:0000075,UBERON:0002216,UBERON:0004765,UBERON:0011134,UBERON:0002209,UBERON:0002213,UBERON:0000982,UBERON:0010317,UBERON:0007844,UBERON:0002242,UBERON:0002204,UBERON:0001434,UBERON:0004770,UBERON:0011138,UBERON:0001130,UBERON:0001066,UBERON:0001468 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002564 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002564 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr14:61116183..61116208,-!p1@SIX1!1.83!244.58!SIX1;;chr12:54393880..54393962,+!p1@HOXC9!1.66!45.02!HOXC9;;chr7:15726296..15726315,-!p1@MEOX2!1.66!45.02!MEOX2;;chr7:27192185..27192209,-!p1@HOXA3!1.63!42.01!HOXA3;;chr9:132427883..132427951,+!p2@PRRX2!1.60!39.01!PRRX2;;chr17:46682321..46682362,-!p1@HOXB6!1.60!38.51!HOXB6;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.59!37.51!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.58!48.02!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.56!94.53!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!1.54!81.03!EBF1;;chr7:15726243..15726293,-!p2@MEOX2!1.51!31.51!MEOX2;;chr7:27196217..27196246,-!p2@HOXA7!1.51!31.01!HOXA7;;chr17:46675558..46675577,-!p2@HOXB6!1.49!30.01!HOXB6;;chr16:86600426..86600441,+!p1@FOXC2!1.45!66.02!FOXC2;;chr3:147127142..147127168,+!p1@ZIC1!1.45!27.51!ZIC1;;chr6:1610293..1610310,+!p1@FOXC1!1.43!42.51!FOXC1;;chr22:19748231..19748317,+!p1@TBX1!1.42!25.51!TBX1;;chr12:54694758..54694805,-!p1@NFE2!1.39!28.51!NFE2;;chr14:37131058..37131139,+!p1@PAX9!1.39!23.51!PAX9;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.34!22.51!GLIS1;;chr7:27205136..27205164,-!p1@HOXA9!1.34!21.01!HOXA9;;chr12:54378923..54378966,+!p1@HOXC10!1.34!21.01!HOXC10;;chr17:46688334..46688385,-!p1@HOXB7!1.33!29.51!HOXB7;;chr12:54379029..54379057,+!p2@HOXC10!1.33!20.51!HOXC10;;chr12:66218255..66218304,+!p3@HMGA2!1.32!52.02!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.31!32.01!TCF12;;chr12:54402745..54402788,+!p1@HOXC8!1.27!17.51!HOXC8;;chr7:19157043..19157088,-!p2@TWIST1!1.26!43.01!TWIST1;;chr19:13134772..13134822,+!p2@NFIX!1.24!24.01!NFIX;;chr12:66218598..66218645,+!p2@HMGA2!1.23!72.52!HMGA2;;chr6:45296048..45296082,+!p1@RUNX2!1.22!18.01!RUNX2;;chr12:66218212..66218244,+!p5@HMGA2!1.20!21.51!HMGA2;;chr3:147111231..147111281,+!p3@ZIC1!1.20!15.01!ZIC1;;chr1:170633348..170633399,+!p2@PRRX1!1.19!19.51!PRRX1;;chr14:37126765..37126799,+!p2@PAX9!1.18!14.00!PAX9;;chr5:72744594..72744609,-!p1@FOXD1!1.16!61.52!FOXD1;;chr17:46675420..46675465,-!p3@HOXB6!1.12!14.00!HOXB6;;chr17:46667594..46667619,-!p1@HOXB3!1.10!11.50!HOXB3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.10!11.50!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!1.08!11.00!HOXC6;;chr17:46675539..46675551,-!p7@HOXB6!1.08!11.00!HOXB6;;chr3:12329358..12329393,+!p3@PPARG!1.06!26.01!PPARG;;chr8:48650715..48650735,-!p1@CEBPD!1.05!1315.95!CEBPD;;chr6:85474299..85474324,-!p1@TBX18!1.05!18.51!TBX18;;chr2:214015111..214015179,-!p1@IKZF2!1.05!18.51!IKZF2;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.51!CREB3L1;;chr2:5832508..5832524,+!p1@SOX11!1.04!10.00!SOX11;;chr7:15725757..15725828,-!p5@MEOX2!1.02!9.50!MEOX2;;chr12:66218836..66218888,+!p1@HMGA2!1.01!87.53!HMGA2;;chr1:59249732..59249749,-!p2@JUN!1.00!111.54!JUN;;chr3:12329397..12329433,+!p2@PPARG!1.00!21.01!PPARG;;chr3:25470156..25470227,+!p2@RARB!1.00!9.00!RARB;;chr6:1612300..1612324,+!p3@FOXC1!1.00!9.00!FOXC1;;chr19:46801639..46801699,+!p1@HIF3A!1.00!9.00!HIF3A;;chr11:47279504..47279563,+!p1@NR1H3!0.99!20.51!NR1H3;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.51!OSR1;;chr6:1612248..1612281,+!p2@FOXC1!0.97!9.00!FOXC1;;chr19:49864746..49864780,-!p2@TEAD2!0.95!11.00!TEAD2;;chr7:27183291..27183324,-!p1@HOXA5!0.95!8.00!HOXA5;;chr7:27213893..27213954,-!p1@HOXA10!0.95!8.00!HOXA10;;chr12:66218183..66218209,+!p4@HMGA2!0.94!15.01!HMGA2;;chr11:46299199..46299233,+!p1@CREB3L1!0.93!40.01!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.50!PRRX1;;chr17:46691732..46691766,-!p4@HOXB8!0.93!7.50!HOXB8;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.92!76.53!GLIS2;;chr14:61116168..61116180,-!p2@SIX1!0.92!8.50!SIX1;;chr14:21994337..21994442,-!p1@SALL2!0.91!20.51!SALL2;;chr11:63684602..63684664,-!p1@RCOR2!0.91!14.50!RCOR2;;chr15:96873984..96873999,+!p3@NR2F2!0.90!53.02!NR2F2;;chr21:47063625..47063658,+!p1@PCBP3!0.90!31.51!PCBP3;;chr17:46655704..46655718,-!p2@HOXB4!0.90!10.50!HOXB4;;chr3:12330560..12330579,+!p1@PPARG!0.90!8.00!PPARG;;chr5:158527139..158527161,-!p5@EBF1!0.90!7.00!EBF1;;chr7:27205106..27205134,-!p2@HOXA9!0.90!7.00!HOXA9;;chr1:170632959..170632987,+!p4@PRRX1!0.89!7.50!PRRX1;;chr12:53614115..53614154,-!p1@RARG!0.88!37.01!RARG;;chr12:115122318..115122331,-!p2@TBX3!0.88!6.50!TBX3;;chr12:54694807..54694832,-!p3@NFE2!0.88!6.50!NFE2;;chr1:170632250..170632277,+!p7@PRRX1!0.88!6.50!PRRX1;;chr2:85981107..85981120,+!p3@ATOH8!0.88!6.50!ATOH8;;chr3:147111198..147111225,+!p4@ZIC1!0.88!6.50!ZIC1;;chr5:158527104..158527135,-!p4@EBF1!0.88!6.50!EBF1;;chr7:15726176..15726191,-!p3@MEOX2!0.88!6.50!MEOX2;;chr17:46690839..46690884,-!p1@HOXB8!0.88!6.50!HOXB8;;chrY:21906594..21906622,-!p1@KDM5D!0.88!6.50!KDM5D;;chr8:49833948..49833973,-!p2@SNAI2!0.87!43.01!SNAI2;;chr9:73029219..73029289,-!p2@KLF9!0.87!20.51!KLF9;;chr5:92918919..92918942,+!p1@NR2F1!0.86!29.51!NR2F1;;chr17:46622070..46622109,-!p1@HOXB2!0.86!14.50!HOXB2;;chr2:239756671..239756732,+!p1@TWIST2!0.85!20.51!TWIST2;;chr11:113930425..113930471,+!p1@ZBTB16!0.85!9.00!ZBTB16;;chr19:45260775..45260838,+!p5@BCL3!0.85!8.00!BCL3;;chr17:46675586..46675600,-!p6@HOXB6!0.85!6.00!HOXB6;;chr2:214015343..214015366,-!p3@IKZF2!0.85!6.00!IKZF2;;chr2:45236540..45236577,-!p1@SIX2!0.85!6.00!SIX2;;chr3:147127177..147127194,+!p2@ZIC1!0.85!6.00!ZIC1;;chr8:77593474..77593612,+!p1@ZFHX4!0.84!26.51!ZFHX4;;chr12:57504975..57505019,-!p2@STAT6!0.84!25.51!STAT6;;chr2:239756739..239756755,+!p2@TWIST2!0.84!10.50!TWIST2;;chr15:96874244..96874259,+!p5@NR2F2!0.83!14.50!NR2F2;;chr19:58987786..58987805,+!p3@ZNF446!0.83!8.50!ZNF446;;chr7:44143925..44143970,+!p1@AEBP1!0.81!131.54!AEBP1;;chr14:24837368..24837401,+!p1@NFATC4!0.81!13.50!NFATC4;;chr10:131762504..131762555,-!p1@EBF3!0.81!5.50!EBF3;;chr12:54410948..54410992,+!p3@HOXC5!0.81!5.50!HOXC5;;chr19:9609272..9609297,-!p1@ZNF560!0.81!5.50!ZNF560;;chr17:46667628..46667642,-!p2@HOXB3!0.81!5.50!HOXB3;;chr8:49833978..49833996,-!p1@SNAI2!0.80!118.04!SNAI2;;chr5:321810..321877,+!p1@AHRR!0.80!18.01!AHRR;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.50!HOXB7;;chr5:72744445..72744466,-!p2@FOXD1!0.79!9.00!FOXD1;;chr6:34204672..34204692,+!p1@HMGA1!0.78!625.71!HMGA1;;chr9:73028814..73028895,-!p1@KLF9!0.78!54.52!KLF9;;chr15:96874012..96874042,+!p2@NR2F2!0.78!50.02!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.78!9.50!ZFP106;;chr17:46621101..46621143,-!p7@HOXB2!0.78!7.00!HOXB2;;chr17:46671504..46671541,-!p2@HOXB5!0.78!5.00!HOXB5;;chr11:46299443..46299459,+!p4@CREB3L1!0.78!5.00!CREB3L1;;chr12:54378984..54378996,+!p7@HOXC10!0.78!5.00!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!0.78!5.00!HOXC10;;chr2:214014959..214015006,-!p4@IKZF2!0.78!5.00!IKZF2;;chr7:27142290..27142310,-!p1@HOXA2!0.78!5.00!HOXA2;;chr7:27183263..27183284,-!p2@HOXA5!0.78!5.00!HOXA5;;chr19:45971246..45971265,+!p1@FOSB!0.77!100.03!FOSB;;chr2:85981222..85981259,+!p2@ATOH8!0.77!8.50!ATOH8;;chr13:73633131..73633149,+!p1@KLF5!0.76!55.52!KLF5;;chr20:48599506..48599526,+!p1@SNAI1!0.75!32.51!SNAI1;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.75!24.01!GLIS2;;chr16:73093174..73093209,-!p3@ZFHX3!0.75!6.50!ZFHX3;;chr7:100076723..100076737,-!p3@TSC22D4!0.74!7.50!TSC22D4;;chr8:116680215..116680245,-!p6@TRPS1!0.74!7.50!TRPS1;;chr20:50179368..50179392,-!p2@NFATC2!0.74!6.00!NFATC2;;chr1:170632723..170632739,+!p8@PRRX1!0.74!4.50!PRRX1;;chr7:15726206..15726217,-!p6@MEOX2!0.74!4.50!MEOX2;;chr7:15726220..15726236,-!p4@MEOX2!0.74!4.50!MEOX2;;chr15:57511589..57511608,+!p4@TCF12!0.74!4.50!TCF12;;chr11:125034640..125034655,+!p1@PKNOX2!0.74!4.50!PKNOX2;;chr12:54402790..54402805,+!p2@HOXC8!0.74!4.50!HOXC8;;chr5:124082322..124082364,-!p1@ZNF608!0.73!12.00!ZNF608;;chr10:63809013..63809041,+!p3@ARID5B!0.72!26.51!ARID5B;;chr3:187463179..187463201,-!p2@BCL6!0.72!19.51!BCL6;;chr17:46622205..46622218,-!p3@HOXB2!0.72!5.00!HOXB2;;chr16:79633894..79633954,-!p3@MAF!0.71!8.50!MAF;;chr12:66218443..66218461,+!p8@HMGA2!0.71!5.50!HMGA2;;chr5:92919068..92919082,+!p5@NR2F1!0.71!5.00!NR2F1;;chr19:56154958..56155027,+!p1@ZNF581!0.70!152.55!ZNF581;;chr20:39317868..39317884,-!p1@MAFB!0.70!54.52!MAFB;;chr10:8096631..8096660,+!p1@GATA3!0.70!5.00!GATA3;;chr1:203055129..203055147,-!p1@MYOG!0.70!4.00!MYOG;;chr16:54320127..54320148,-!p6@IRX3!0.70!4.00!IRX3;;chr22:19746969..19746987,+!p2@TBX1!0.70!4.00!TBX1;;chr2:176994408..176994492,+!p1@HOXD8!0.70!4.00!HOXD8;;chr20:30193083..30193098,+!p1@ID1!0.69!361.62!ID1;;chr2:113993052..113993097,-!p2@PAX8!0.69!9.50!PAX8;;chr16:86544113..86544145,+!p1@FOXF1!0.69!5.00!FOXF1;;chr17:17726907..17726958,-!p2@SREBF1!0.68!26.51!SREBF1;;chr5:92920456..92920488,+!p9@NR2F1!0.68!4.50!NR2F1;;chr1:59249688..59249703,-!p3@JUN!0.67!25.01!JUN;;chr11:65687362..65687436,+!p3@DRAP1!0.67!19.01!DRAP1;;chr17:46621937..46621966,-!p2@HOXB2!0.67!11.00!HOXB2;;chr17:46622114..46622138,-!p4@HOXB2!0.67!6.00!HOXB2;;chr11:65687158..65687216,+!p4@DRAP1!0.66!23.51!DRAP1;;chr6:34204921..34204939,+!p3@HMGA1!0.65!123.04!HMGA1;;chr1:158969752..158969780,+!p6@IFI16!0.65!6.50!IFI16;;chr1:158969727..158969749,+!p11@IFI16!0.65!3.50!IFI16;;chr5:153857778..153857794,-!p1@HAND1!0.65!3.50!HAND1;;chr12:54422245..54422263,+!p7@HOXC6!0.65!3.50!HOXC6;;chr16:86601088..86601105,+!p5@FOXC2!0.65!3.50!FOXC2;;chr17:46621146..46621180,-!p10@HOXB2!0.65!3.50!HOXB2;;chr17:46675469..46675481,-!p4@HOXB6!0.65!3.50!HOXB6;;chr17:46688310..46688323,-!p4@HOXB7!0.65!3.50!HOXB7;;chr2:119604456..119604501,-!p2@EN1!0.65!3.50!EN1;;chr6:21593973..21593988,+!p1@SOX4!0.64!143.55!SOX4;;chr9:94186131..94186174,-!p2@NFIL3!0.64!32.51!NFIL3;;chr14:21994449..21994524,-!p2@SALL2!0.64!11.50!SALL2;;chr15:96874145..96874166,+!p7@NR2F2!0.64!7.00!NR2F2;;chr1:23694556..23694584,-!p6@ZNF436!0.64!4.50!ZNF436;;chr1:170633262..170633285,+!p3@PRRX1!0.64!4.00!PRRX1;;chr1:59249707..59249727,-!p1@JUN!0.63!164.06!JUN;;chr19:7580944..7581031,+!p1@ZNF358!0.63!118.04!ZNF358;;chrX:106960285..106960299,-!p1@TSC22D3!0.63!104.04!TSC22D3;;chr19:45251943..45252006,+!p1@BCL3!0.63!102.53!BCL3;;chr16:79634624..79634642,-!p1@MAF!0.63!15.01!MAF;;chr1:158979851..158979865,+!p5@IFI16!0.63!8.00!IFI16;;chr16:54320158..54320200,-!p5@IRX3!0.63!5.00!IRX3;;chr7:149470540..149470596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| |expression_enrichment_score=chr14:61116183..61116208,-!p1@SIX1!1.83!244.58!SIX1;;chr12:54393880..54393962,+!p1@HOXC9!1.66!45.02!HOXC9;;chr7:15726296..15726315,-!p1@MEOX2!1.66!45.02!MEOX2;;chr7:27192185..27192209,-!p1@HOXA3!1.63!42.01!HOXA3;;chr9:132427883..132427951,+!p2@PRRX2!1.60!39.01!PRRX2;;chr17:46682321..46682362,-!p1@HOXB6!1.60!38.51!HOXB6;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.59!37.51!HOXC5;;chr9:132427972..132428056,+!p1@PRRX2!1.58!48.02!PRRX2;;chr7:19157248..19157268,-!p1@TWIST1!1.56!94.53!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!1.54!81.03!EBF1;;chr7:15726243..15726293,-!p2@MEOX2!1.51!31.51!MEOX2;;chr7:27196217..27196246,-!p2@HOXA7!1.51!31.01!HOXA7;;chr17:46675558..46675577,-!p2@HOXB6!1.49!30.01!HOXB6;;chr16:86600426..86600441,+!p1@FOXC2!1.45!66.02!FOXC2;;chr3:147127142..147127168,+!p1@ZIC1!1.45!27.51!ZIC1;;chr6:1610293..1610310,+!p1@FOXC1!1.43!42.51!FOXC1;;chr22:19748231..19748317,+!p1@TBX1!1.42!25.51!TBX1;;chr12:54694758..54694805,-!p1@NFE2!1.39!28.51!NFE2;;chr14:37131058..37131139,+!p1@PAX9!1.39!23.51!PAX9;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.34!22.51!GLIS1;;chr7:27205136..27205164,-!p1@HOXA9!1.34!21.01!HOXA9;;chr12:54378923..54378966,+!p1@HOXC10!1.34!21.01!HOXC10;;chr17:46688334..46688385,-!p1@HOXB7!1.33!29.51!HOXB7;;chr12:54379029..54379057,+!p2@HOXC10!1.33!20.51!HOXC10;;chr12:66218255..66218304,+!p3@HMGA2!1.32!52.02!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.31!32.01!TCF12;;chr12:54402745..54402788,+!p1@HOXC8!1.27!17.51!HOXC8;;chr7:19157043..19157088,-!p2@TWIST1!1.26!43.01!TWIST1;;chr19:13134772..13134822,+!p2@NFIX!1.24!24.01!NFIX;;chr12:66218598..66218645,+!p2@HMGA2!1.23!72.52!HMGA2;;chr6:45296048..45296082,+!p1@RUNX2!1.22!18.01!RUNX2;;chr12:66218212..66218244,+!p5@HMGA2!1.20!21.51!HMGA2;;chr3:147111231..147111281,+!p3@ZIC1!1.20!15.01!ZIC1;;chr1:170633348..170633399,+!p2@PRRX1!1.19!19.51!PRRX1;;chr14:37126765..37126799,+!p2@PAX9!1.18!14.00!PAX9;;chr5:72744594..72744609,-!p1@FOXD1!1.16!61.52!FOXD1;;chr17:46675420..46675465,-!p3@HOXB6!1.12!14.00!HOXB6;;chr17:46667594..46667619,-!p1@HOXB3!1.10!11.50!HOXB3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.10!11.50!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!1.08!11.00!HOXC6;;chr17:46675539..46675551,-!p7@HOXB6!1.08!11.00!HOXB6;;chr3:12329358..12329393,+!p3@PPARG!1.06!26.01!PPARG;;chr8:48650715..48650735,-!p1@CEBPD!1.05!1315.95!CEBPD;;chr6:85474299..85474324,-!p1@TBX18!1.05!18.51!TBX18;;chr2:214015111..214015179,-!p1@IKZF2!1.05!18.51!IKZF2;;chr11:46299539..46299620,+!p2@CREB3L1!1.05!17.51!CREB3L1;;chr2:5832508..5832524,+!p1@SOX11!1.04!10.00!SOX11;;chr7:15725757..15725828,-!p5@MEOX2!1.02!9.50!MEOX2;;chr12:66218836..66218888,+!p1@HMGA2!1.01!87.53!HMGA2;;chr1:59249732..59249749,-!p2@JUN!1.00!111.54!JUN;;chr3:12329397..12329433,+!p2@PPARG!1.00!21.01!PPARG;;chr3:25470156..25470227,+!p2@RARB!1.00!9.00!RARB;;chr6:1612300..1612324,+!p3@FOXC1!1.00!9.00!FOXC1;;chr19:46801639..46801699,+!p1@HIF3A!1.00!9.00!HIF3A;;chr11:47279504..47279563,+!p1@NR1H3!0.99!20.51!NR1H3;;chr2:19558373..19558392,-!p1@OSR1!0.97!23.51!OSR1;;chr6:1612248..1612281,+!p2@FOXC1!0.97!9.00!FOXC1;;chr19:49864746..49864780,-!p2@TEAD2!0.95!11.00!TEAD2;;chr7:27183291..27183324,-!p1@HOXA5!0.95!8.00!HOXA5;;chr7:27213893..27213954,-!p1@HOXA10!0.95!8.00!HOXA10;;chr12:66218183..66218209,+!p4@HMGA2!0.94!15.01!HMGA2;;chr11:46299199..46299233,+!p1@CREB3L1!0.93!40.01!CREB3L1;;chr1:170632285..170632309,+!p1@PRRX1!0.93!8.50!PRRX1;;chr17:46691732..46691766,-!p4@HOXB8!0.93!7.50!HOXB8;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.92!76.53!GLIS2;;chr14:61116168..61116180,-!p2@SIX1!0.92!8.50!SIX1;;chr14:21994337..21994442,-!p1@SALL2!0.91!20.51!SALL2;;chr11:63684602..63684664,-!p1@RCOR2!0.91!14.50!RCOR2;;chr15:96873984..96873999,+!p3@NR2F2!0.90!53.02!NR2F2;;chr21:47063625..47063658,+!p1@PCBP3!0.90!31.51!PCBP3;;chr17:46655704..46655718,-!p2@HOXB4!0.90!10.50!HOXB4;;chr3:12330560..12330579,+!p1@PPARG!0.90!8.00!PPARG;;chr5:158527139..158527161,-!p5@EBF1!0.90!7.00!EBF1;;chr7:27205106..27205134,-!p2@HOXA9!0.90!7.00!HOXA9;;chr1:170632959..170632987,+!p4@PRRX1!0.89!7.50!PRRX1;;chr12:53614115..53614154,-!p1@RARG!0.88!37.01!RARG;;chr12:115122318..115122331,-!p2@TBX3!0.88!6.50!TBX3;;chr12:54694807..54694832,-!p3@NFE2!0.88!6.50!NFE2;;chr1:170632250..170632277,+!p7@PRRX1!0.88!6.50!PRRX1;;chr2:85981107..85981120,+!p3@ATOH8!0.88!6.50!ATOH8;;chr3:147111198..147111225,+!p4@ZIC1!0.88!6.50!ZIC1;;chr5:158527104..158527135,-!p4@EBF1!0.88!6.50!EBF1;;chr7:15726176..15726191,-!p3@MEOX2!0.88!6.50!MEOX2;;chr17:46690839..46690884,-!p1@HOXB8!0.88!6.50!HOXB8;;chrY:21906594..21906622,-!p1@KDM5D!0.88!6.50!KDM5D;;chr8:49833948..49833973,-!p2@SNAI2!0.87!43.01!SNAI2;;chr9:73029219..73029289,-!p2@KLF9!0.87!20.51!KLF9;;chr5:92918919..92918942,+!p1@NR2F1!0.86!29.51!NR2F1;;chr17:46622070..46622109,-!p1@HOXB2!0.86!14.50!HOXB2;;chr2:239756671..239756732,+!p1@TWIST2!0.85!20.51!TWIST2;;chr11:113930425..113930471,+!p1@ZBTB16!0.85!9.00!ZBTB16;;chr19:45260775..45260838,+!p5@BCL3!0.85!8.00!BCL3;;chr17:46675586..46675600,-!p6@HOXB6!0.85!6.00!HOXB6;;chr2:214015343..214015366,-!p3@IKZF2!0.85!6.00!IKZF2;;chr2:45236540..45236577,-!p1@SIX2!0.85!6.00!SIX2;;chr3:147127177..147127194,+!p2@ZIC1!0.85!6.00!ZIC1;;chr8:77593474..77593612,+!p1@ZFHX4!0.84!26.51!ZFHX4;;chr12:57504975..57505019,-!p2@STAT6!0.84!25.51!STAT6;;chr2:239756739..239756755,+!p2@TWIST2!0.84!10.50!TWIST2;;chr15:96874244..96874259,+!p5@NR2F2!0.83!14.50!NR2F2;;chr19:58987786..58987805,+!p3@ZNF446!0.83!8.50!ZNF446;;chr7:44143925..44143970,+!p1@AEBP1!0.81!131.54!AEBP1;;chr14:24837368..24837401,+!p1@NFATC4!0.81!13.50!NFATC4;;chr10:131762504..131762555,-!p1@EBF3!0.81!5.50!EBF3;;chr12:54410948..54410992,+!p3@HOXC5!0.81!5.50!HOXC5;;chr19:9609272..9609297,-!p1@ZNF560!0.81!5.50!ZNF560;;chr17:46667628..46667642,-!p2@HOXB3!0.81!5.50!HOXB3;;chr8:49833978..49833996,-!p1@SNAI2!0.80!118.04!SNAI2;;chr5:321810..321877,+!p1@AHRR!0.80!18.01!AHRR;;chr17:46687959..46688007,-!p2@HOXB7!0.80!7.50!HOXB7;;chr5:72744445..72744466,-!p2@FOXD1!0.79!9.00!FOXD1;;chr6:34204672..34204692,+!p1@HMGA1!0.78!625.71!HMGA1;;chr9:73028814..73028895,-!p1@KLF9!0.78!54.52!KLF9;;chr15:96874012..96874042,+!p2@NR2F2!0.78!50.02!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.78!9.50!ZFP106;;chr17:46621101..46621143,-!p7@HOXB2!0.78!7.00!HOXB2;;chr17:46671504..46671541,-!p2@HOXB5!0.78!5.00!HOXB5;;chr11:46299443..46299459,+!p4@CREB3L1!0.78!5.00!CREB3L1;;chr12:54378984..54378996,+!p7@HOXC10!0.78!5.00!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!0.78!5.00!HOXC10;;chr2:214014959..214015006,-!p4@IKZF2!0.78!5.00!IKZF2;;chr7:27142290..27142310,-!p1@HOXA2!0.78!5.00!HOXA2;;chr7:27183263..27183284,-!p2@HOXA5!0.78!5.00!HOXA5;;chr19:45971246..45971265,+!p1@FOSB!0.77!100.03!FOSB;;chr2:85981222..85981259,+!p2@ATOH8!0.77!8.50!ATOH8;;chr13:73633131..73633149,+!p1@KLF5!0.76!55.52!KLF5;;chr20:48599506..48599526,+!p1@SNAI1!0.75!32.51!SNAI1;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.75!24.01!GLIS2;;chr16:73093174..73093209,-!p3@ZFHX3!0.75!6.50!ZFHX3;;chr7:100076723..100076737,-!p3@TSC22D4!0.74!7.50!TSC22D4;;chr8:116680215..116680245,-!p6@TRPS1!0.74!7.50!TRPS1;;chr20:50179368..50179392,-!p2@NFATC2!0.74!6.00!NFATC2;;chr1:170632723..170632739,+!p8@PRRX1!0.74!4.50!PRRX1;;chr7:15726206..15726217,-!p6@MEOX2!0.74!4.50!MEOX2;;chr7:15726220..15726236,-!p4@MEOX2!0.74!4.50!MEOX2;;chr15:57511589..57511608,+!p4@TCF12!0.74!4.50!TCF12;;chr11:125034640..125034655,+!p1@PKNOX2!0.74!4.50!PKNOX2;;chr12:54402790..54402805,+!p2@HOXC8!0.74!4.50!HOXC8;;chr5:124082322..124082364,-!p1@ZNF608!0.73!12.00!ZNF608;;chr10:63809013..63809041,+!p3@ARID5B!0.72!26.51!ARID5B;;chr3:187463179..187463201,-!p2@BCL6!0.72!19.51!BCL6;;chr17:46622205..46622218,-!p3@HOXB2!0.72!5.00!HOXB2;;chr16:79633894..79633954,-!p3@MAF!0.71!8.50!MAF;;chr12:66218443..66218461,+!p8@HMGA2!0.71!5.50!HMGA2;;chr5:92919068..92919082,+!p5@NR2F1!0.71!5.00!NR2F1;;chr19:56154958..56155027,+!p1@ZNF581!0.70!152.55!ZNF581;;chr20:39317868..39317884,-!p1@MAFB!0.70!54.52!MAFB;;chr10:8096631..8096660,+!p1@GATA3!0.70!5.00!GATA3;;chr1:203055129..203055147,-!p1@MYOG!0.70!4.00!MYOG;;chr16:54320127..54320148,-!p6@IRX3!0.70!4.00!IRX3;;chr22:19746969..19746987,+!p2@TBX1!0.70!4.00!TBX1;;chr2:176994408..176994492,+!p1@HOXD8!0.70!4.00!HOXD8;;chr20:30193083..30193098,+!p1@ID1!0.69!361.62!ID1;;chr2:113993052..113993097,-!p2@PAX8!0.69!9.50!PAX8;;chr16:86544113..86544145,+!p1@FOXF1!0.69!5.00!FOXF1;;chr17:17726907..17726958,-!p2@SREBF1!0.68!26.51!SREBF1;;chr5:92920456..92920488,+!p9@NR2F1!0.68!4.50!NR2F1;;chr1:59249688..59249703,-!p3@JUN!0.67!25.01!JUN;;chr11:65687362..65687436,+!p3@DRAP1!0.67!19.01!DRAP1;;chr17:46621937..46621966,-!p2@HOXB2!0.67!11.00!HOXB2;;chr17:46622114..46622138,-!p4@HOXB2!0.67!6.00!HOXB2;;chr11:65687158..65687216,+!p4@DRAP1!0.66!23.51!DRAP1;;chr6:34204921..34204939,+!p3@HMGA1!0.65!123.04!HMGA1;;chr1:158969752..158969780,+!p6@IFI16!0.65!6.50!IFI16;;chr1:158969727..158969749,+!p11@IFI16!0.65!3.50!IFI16;;chr5:153857778..153857794,-!p1@HAND1!0.65!3.50!HAND1;;chr12:54422245..54422263,+!p7@HOXC6!0.65!3.50!HOXC6;;chr16:86601088..86601105,+!p5@FOXC2!0.65!3.50!FOXC2;;chr17:46621146..46621180,-!p10@HOXB2!0.65!3.50!HOXB2;;chr17:46675469..46675481,-!p4@HOXB6!0.65!3.50!HOXB6;;chr17:46688310..46688323,-!p4@HOXB7!0.65!3.50!HOXB7;;chr2:119604456..119604501,-!p2@EN1!0.65!3.50!EN1;;chr6:21593973..21593988,+!p1@SOX4!0.64!143.55!SOX4;;chr9:94186131..94186174,-!p2@NFIL3!0.64!32.51!NFIL3;;chr14:21994449..21994524,-!p2@SALL2!0.64!11.50!SALL2;;chr15:96874145..96874166,+!p7@NR2F2!0.64!7.00!NR2F2;;chr1:23694556..23694584,-!p6@ZNF436!0.64!4.50!ZNF436;;chr1:170633262..170633285,+!p3@PRRX1!0.64!4.00!PRRX1;;chr1:59249707..59249727,-!p1@JUN!0.63!164.06!JUN;;chr19:7580944..7581031,+!p1@ZNF358!0.63!118.04!ZNF358;;chrX:106960285..106960299,-!p1@TSC22D3!0.63!104.04!TSC22D3;;chr19:45251943..45252006,+!p1@BCL3!0.63!102.53!BCL3;;chr16:79634624..79634642,-!p1@MAF!0.63!15.01!MAF;;chr1:158979851..158979865,+!p5@IFI16!0.63!8.00!IFI16;;chr16:54320158..54320200,-!p5@IRX3!0.63!5.00!IRX3;;chr7:149470540..149470596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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000982;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002242;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007844;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011135;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0011137 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 40: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12019.11409-118E5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12019.11409-118E5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12019.11409-118E5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12019.11409-118E5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Nucleus%2520Pulposus%2520Cell%252c%2520donor2.CNhs12019.11409-118E5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11409-118E5 | |id=FF:11409-118E5 | ||
|is_a=EFO:0002091;;FF:0000123 | |is_a=EFO:0002091;;FF:0000123 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12019 | |library_id=CNhs12019 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs12019 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11409 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11409 | |||
|name=Nucleus Pulposus Cell, donor2 | |name=Nucleus Pulposus Cell, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12019,LSID837,release011,COMPLETED | |profile_hcage=CNhs12019,LSID837,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 64: | Line 75: | ||
|rna_rin= | |rna_rin= | ||
|rna_sample_type=total RNA | |rna_sample_type=total RNA | ||
|rna_tube_id= | |rna_tube_id=1.18E+07 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
Line 89: | Line 100: | ||
|top_motifs=GZF1:2.15043104841;RXR{A,B,G}:2.12694799119;EBF1:1.89299892599;NR6A1:1.7697561009;ATF6:1.51165505976;ZNF423:1.45905601871;TFAP4:1.39236708954;TAL1_TCF{3,4,12}:1.33143267141;ZBTB6:1.32920468579;NR3C1:1.30575447619;GLI1..3:1.27203459694;ZNF238:1.26408803354;UFEwm:1.24297296319;NR1H4:1.16393824599;GFI1B:1.15105676191;FOXD3:1.0583632945;XBP1:1.03257951262;PAX5:1.02488688797;ESR1:1.01769490388;NANOG{mouse}:1.00317858856;KLF4:0.980651021494;TFCP2:0.973515722039;HOX{A5,B5}:0.96176068927;ZIC1..3:0.960589215892;FOXL1:0.893583451427;GTF2A1,2:0.862551123395;NKX6-1,2:0.855692088931;PATZ1:0.849196186095;SPZ1:0.836266476568;ALX4:0.831131692554;NKX2-1,4:0.814902644474;TLX1..3_NFIC{dimer}:0.791084024161;EN1,2:0.72906952638;HES1:0.716927502502;PAX1,9:0.699501981736;DBP:0.636524426692;SRF:0.609792750846;TEAD1:0.596225249247;IKZF1:0.593324106679;GTF2I:0.57762883274;MYBL2:0.562003012744;PPARG:0.549051847023;AR:0.527406495599;NFE2L1:0.523723934271;STAT2,4,6:0.521692845938;MZF1:0.514083528836;NKX2-2,8:0.495187601862;NFIX:0.489529849492;TBP:0.477144757686;MYFfamily:0.473964990953;PAX4:0.456915135377;AIRE:0.455682645673;ONECUT1,2:0.43854796673;RREB1:0.420268804285;ZNF384:0.400417114518;NKX2-3_NKX2-5:0.392412277913;DMAP1_NCOR{1,2}_SMARC:0.390884935327;YY1:0.38480822357;MAZ:0.380058702718;SMAD1..7,9:0.365529439968;TFAP2{A,C}:0.353554166234;TEF:0.347096878419;NFATC1..3:0.342473253178;MTF1:0.335451359111;NHLH1,2:0.312515668088;HMX1:0.303479250538;HIC1:0.30265284726;T:0.275112597012;HOX{A4,D4}:0.27127367747;MAFB:0.252056532684;FOXQ1:0.234146043169;TOPORS:0.228714523452;HAND1,2:0.220614169297;RXRA_VDR{dimer}:0.219349388563;AHR_ARNT_ARNT2:0.214612065886;GFI1:0.214313242922;SOX17:0.173581015201;EVI1:0.173269377962;LHX3,4:0.157566776646;SOX5:0.155978733721;FOXO1,3,4:0.146154624948;GCM1,2:0.140265111069;ADNP_IRX_SIX_ZHX:0.134562774529;HNF4A_NR2F1,2:0.130929043532;POU6F1:0.127239174054;SP1:0.106069172494;MED-1{core}:0.0918717670553;RUNX1..3:0.0904379043594;PRDM1:0.090269246624;STAT5{A,B}:0.0851423913651;NKX3-1:0.0810836516337;STAT1,3:0.0738514612012;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0711764134068;HNF1A:0.0615531304273;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.031565259951;GATA4:0.0230074889126;POU2F1..3:-0.00509253781078;REST:-0.0107885486988;TP53:-0.0161118976513;BACH2:-0.0182747014531;SREBF1,2:-0.0261626559292;POU3F1..4:-0.026985169603;MEF2{A,B,C,D}:-0.0317132212821;ESRRA:-0.0357418375921;RBPJ:-0.0403240692901;RFX1:-0.0618095950798;NFE2L2:-0.0957839584113;PDX1:-0.110828799443;NFE2:-0.116667392127;BPTF:-0.12798913339;ZNF148:-0.133155988693;TFAP2B:-0.140691760114;ARID5B:-0.159610127571;NR5A1,2:-0.160741222325;EGR1..3:-0.161493713775;bHLH_family:-0.172612907798;TGIF1:-0.182661679208;PAX8:-0.18666043698;FOSL2:-0.198383171788;MTE{core}:-0.208756789299;HLF:-0.216079242893;PRRX1,2:-0.226889838522;RORA:-0.230028345907;ZNF143:-0.259547601643;LEF1_TCF7_TCF7L1,2:-0.271402458467;FOS_FOS{B,L1}_JUN{B,D}:-0.287456430254;LMO2:-0.311088133992;PBX1:-0.316646732549;TBX4,5:-0.336109088731;IKZF2:-0.338709557574;NFKB1_REL_RELA:-0.350602256479;ZFP161:-0.421075012193;JUN:-0.423553831492;NKX3-2:-0.435644806067;HBP1_HMGB_SSRP1_UBTF:-0.446560597444;XCPE1{core}:-0.453284023659;FOXP3:-0.462771587276;POU1F1:-0.476584325645;FOXN1:-0.479582316541;PAX3,7:-0.483819593758;CDC5L:-0.49977306861;CEBPA,B_DDIT3:-0.503906318151;FOX{D1,D2}:-0.517746922106;SOX2:-0.553193223831;GATA6:-0.566737778304;ZEB1:-0.570184584702;HOX{A6,A7,B6,B7}:-0.571444374734;ETS1,2:-0.57753513442;CDX1,2,4:-0.579891893039;RFX2..5_RFXANK_RFXAP:-0.585218692993;SNAI1..3:-0.586379049393;SPI1:-0.59918145838;IRF1,2:-0.600643336009;HOXA9_MEIS1:-0.611130654935;SOX{8,9,10}:-0.627423657671;IRF7:-0.635991145177;FOX{I1,J2}:-0.636062651272;MYOD1:-0.658760435011;FOXM1:-0.669113215655;NRF1:-0.675266774868;HIF1A:-0.702244568948;NFIL3:-0.705349598562;ZBTB16:-0.70740794457;CUX2:-0.707673731418;SPIB:-0.714145025481;PAX2:-0.718674701926;FOX{F1,F2,J1}:-0.734577069579;ELK1,4_GABP{A,B1}:-0.738259469778;ALX1:-0.811638381043;CREB1:-0.819764897482;ATF4:-0.823984217615;VSX1,2:-0.888352169693;ELF1,2,4:-0.916453573871;MYB:-0.931031014522;FOXP1:-0.936654220573;HSF1,2:-0.937535201455;BREu{core}:-0.961932192549;E2F1..5:-0.975323692849;TFDP1:-0.99144260311;ATF5_CREB3:-0.996867692498;NFY{A,B,C}:-0.997012078748;PAX6:-1.02776437482;HMGA1,2:-1.04649624342;ATF2:-1.10970859088;NANOG:-1.15743391927;POU5F1:-1.15816069775;OCT4_SOX2{dimer}:-1.20865530488;EP300:-1.21088758667;FOXA2:-1.2682666672;CRX:-1.40591869532;PITX1..3:-1.49882001165;TLX2:-1.78689209281 | |top_motifs=GZF1:2.15043104841;RXR{A,B,G}:2.12694799119;EBF1:1.89299892599;NR6A1:1.7697561009;ATF6:1.51165505976;ZNF423:1.45905601871;TFAP4:1.39236708954;TAL1_TCF{3,4,12}:1.33143267141;ZBTB6:1.32920468579;NR3C1:1.30575447619;GLI1..3:1.27203459694;ZNF238:1.26408803354;UFEwm:1.24297296319;NR1H4:1.16393824599;GFI1B:1.15105676191;FOXD3:1.0583632945;XBP1:1.03257951262;PAX5:1.02488688797;ESR1:1.01769490388;NANOG{mouse}:1.00317858856;KLF4:0.980651021494;TFCP2:0.973515722039;HOX{A5,B5}:0.96176068927;ZIC1..3:0.960589215892;FOXL1:0.893583451427;GTF2A1,2:0.862551123395;NKX6-1,2:0.855692088931;PATZ1:0.849196186095;SPZ1:0.836266476568;ALX4:0.831131692554;NKX2-1,4:0.814902644474;TLX1..3_NFIC{dimer}:0.791084024161;EN1,2:0.72906952638;HES1:0.716927502502;PAX1,9:0.699501981736;DBP:0.636524426692;SRF:0.609792750846;TEAD1:0.596225249247;IKZF1:0.593324106679;GTF2I:0.57762883274;MYBL2:0.562003012744;PPARG:0.549051847023;AR:0.527406495599;NFE2L1:0.523723934271;STAT2,4,6:0.521692845938;MZF1:0.514083528836;NKX2-2,8:0.495187601862;NFIX:0.489529849492;TBP:0.477144757686;MYFfamily:0.473964990953;PAX4:0.456915135377;AIRE:0.455682645673;ONECUT1,2:0.43854796673;RREB1:0.420268804285;ZNF384:0.400417114518;NKX2-3_NKX2-5:0.392412277913;DMAP1_NCOR{1,2}_SMARC:0.390884935327;YY1:0.38480822357;MAZ:0.380058702718;SMAD1..7,9:0.365529439968;TFAP2{A,C}:0.353554166234;TEF:0.347096878419;NFATC1..3:0.342473253178;MTF1:0.335451359111;NHLH1,2:0.312515668088;HMX1:0.303479250538;HIC1:0.30265284726;T:0.275112597012;HOX{A4,D4}:0.27127367747;MAFB:0.252056532684;FOXQ1:0.234146043169;TOPORS:0.228714523452;HAND1,2:0.220614169297;RXRA_VDR{dimer}:0.219349388563;AHR_ARNT_ARNT2:0.214612065886;GFI1:0.214313242922;SOX17:0.173581015201;EVI1:0.173269377962;LHX3,4:0.157566776646;SOX5:0.155978733721;FOXO1,3,4:0.146154624948;GCM1,2:0.140265111069;ADNP_IRX_SIX_ZHX:0.134562774529;HNF4A_NR2F1,2:0.130929043532;POU6F1:0.127239174054;SP1:0.106069172494;MED-1{core}:0.0918717670553;RUNX1..3:0.0904379043594;PRDM1:0.090269246624;STAT5{A,B}:0.0851423913651;NKX3-1:0.0810836516337;STAT1,3:0.0738514612012;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0711764134068;HNF1A:0.0615531304273;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.031565259951;GATA4:0.0230074889126;POU2F1..3:-0.00509253781078;REST:-0.0107885486988;TP53:-0.0161118976513;BACH2:-0.0182747014531;SREBF1,2:-0.0261626559292;POU3F1..4:-0.026985169603;MEF2{A,B,C,D}:-0.0317132212821;ESRRA:-0.0357418375921;RBPJ:-0.0403240692901;RFX1:-0.0618095950798;NFE2L2:-0.0957839584113;PDX1:-0.110828799443;NFE2:-0.116667392127;BPTF:-0.12798913339;ZNF148:-0.133155988693;TFAP2B:-0.140691760114;ARID5B:-0.159610127571;NR5A1,2:-0.160741222325;EGR1..3:-0.161493713775;bHLH_family:-0.172612907798;TGIF1:-0.182661679208;PAX8:-0.18666043698;FOSL2:-0.198383171788;MTE{core}:-0.208756789299;HLF:-0.216079242893;PRRX1,2:-0.226889838522;RORA:-0.230028345907;ZNF143:-0.259547601643;LEF1_TCF7_TCF7L1,2:-0.271402458467;FOS_FOS{B,L1}_JUN{B,D}:-0.287456430254;LMO2:-0.311088133992;PBX1:-0.316646732549;TBX4,5:-0.336109088731;IKZF2:-0.338709557574;NFKB1_REL_RELA:-0.350602256479;ZFP161:-0.421075012193;JUN:-0.423553831492;NKX3-2:-0.435644806067;HBP1_HMGB_SSRP1_UBTF:-0.446560597444;XCPE1{core}:-0.453284023659;FOXP3:-0.462771587276;POU1F1:-0.476584325645;FOXN1:-0.479582316541;PAX3,7:-0.483819593758;CDC5L:-0.49977306861;CEBPA,B_DDIT3:-0.503906318151;FOX{D1,D2}:-0.517746922106;SOX2:-0.553193223831;GATA6:-0.566737778304;ZEB1:-0.570184584702;HOX{A6,A7,B6,B7}:-0.571444374734;ETS1,2:-0.57753513442;CDX1,2,4:-0.579891893039;RFX2..5_RFXANK_RFXAP:-0.585218692993;SNAI1..3:-0.586379049393;SPI1:-0.59918145838;IRF1,2:-0.600643336009;HOXA9_MEIS1:-0.611130654935;SOX{8,9,10}:-0.627423657671;IRF7:-0.635991145177;FOX{I1,J2}:-0.636062651272;MYOD1:-0.658760435011;FOXM1:-0.669113215655;NRF1:-0.675266774868;HIF1A:-0.702244568948;NFIL3:-0.705349598562;ZBTB16:-0.70740794457;CUX2:-0.707673731418;SPIB:-0.714145025481;PAX2:-0.718674701926;FOX{F1,F2,J1}:-0.734577069579;ELK1,4_GABP{A,B1}:-0.738259469778;ALX1:-0.811638381043;CREB1:-0.819764897482;ATF4:-0.823984217615;VSX1,2:-0.888352169693;ELF1,2,4:-0.916453573871;MYB:-0.931031014522;FOXP1:-0.936654220573;HSF1,2:-0.937535201455;BREu{core}:-0.961932192549;E2F1..5:-0.975323692849;TFDP1:-0.99144260311;ATF5_CREB3:-0.996867692498;NFY{A,B,C}:-0.997012078748;PAX6:-1.02776437482;HMGA1,2:-1.04649624342;ATF2:-1.10970859088;NANOG:-1.15743391927;POU5F1:-1.15816069775;OCT4_SOX2{dimer}:-1.20865530488;EP300:-1.21088758667;FOXA2:-1.2682666672;CRX:-1.40591869532;PITX1..3:-1.49882001165;TLX2:-1.78689209281 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11409-118E5;search_select_hide=table117:FF:11409-118E5 | |||
}} | }} |
Latest revision as of 17:59, 4 June 2020
Name: | Nucleus Pulposus Cell, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs12019 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12019
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12019
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.549 |
10 | 10 | 0.54 |
100 | 100 | 0.973 |
101 | 101 | 0.612 |
102 | 102 | 0.371 |
103 | 103 | 0.125 |
104 | 104 | 0.604 |
105 | 105 | 0.719 |
106 | 106 | 0.056 |
107 | 107 | 0.0197 |
108 | 108 | 0.36 |
109 | 109 | 0.646 |
11 | 11 | 0.152 |
110 | 110 | 0.374 |
111 | 111 | 0.95 |
112 | 112 | 0.588 |
113 | 113 | 0.149 |
114 | 114 | 0.379 |
115 | 115 | 0.131 |
116 | 116 | 0.0272 |
117 | 117 | 0.547 |
118 | 118 | 0.818 |
119 | 119 | 0.62 |
12 | 12 | 0.201 |
120 | 120 | 0.0279 |
121 | 121 | 0.168 |
122 | 122 | 0.0893 |
123 | 123 | 0.00254 |
124 | 124 | 0.521 |
125 | 125 | 0.679 |
126 | 126 | 0.499 |
127 | 127 | 0.456 |
128 | 128 | 0.0118 |
129 | 129 | 0.168 |
13 | 13 | 0.683 |
130 | 130 | 0.577 |
131 | 131 | 0.239 |
132 | 132 | 0.158 |
133 | 133 | 0.381 |
134 | 134 | 0.776 |
135 | 135 | 0.563 |
136 | 136 | 0.859 |
137 | 137 | 0.0326 |
138 | 138 | 0.438 |
139 | 139 | 0.243 |
14 | 14 | 0.856 |
140 | 140 | 0.554 |
141 | 141 | 0.354 |
142 | 142 | 0.692 |
143 | 143 | 0.468 |
144 | 144 | 0.389 |
145 | 145 | 0.435 |
146 | 146 | 0.29 |
147 | 147 | 0.469 |
148 | 148 | 0.158 |
149 | 149 | 0.0173 |
15 | 15 | 0.76 |
150 | 150 | 0.611 |
151 | 151 | 0.33 |
152 | 152 | 0.233 |
153 | 153 | 0.855 |
154 | 154 | 0.299 |
155 | 155 | 0.161 |
156 | 156 | 0.319 |
157 | 157 | 0.945 |
158 | 158 | 0.137 |
159 | 159 | 0.834 |
16 | 16 | 0.0348 |
160 | 160 | 0.0813 |
161 | 161 | 0.201 |
162 | 162 | 0.0087 |
163 | 163 | 0.653 |
164 | 164 | 0.441 |
165 | 165 | 0.93 |
166 | 166 | 0.174 |
167 | 167 | 0.414 |
168 | 168 | 0.852 |
169 | 169 | 0.0395 |
17 | 17 | 0.473 |
18 | 18 | 0.351 |
19 | 19 | 0.0269 |
2 | 2 | 0.14 |
20 | 20 | 0.448 |
21 | 21 | 0.526 |
22 | 22 | 0.0695 |
23 | 23 | 0.22 |
24 | 24 | 0.63 |
25 | 25 | 0.675 |
26 | 26 | 0.302 |
27 | 27 | 0.125 |
28 | 28 | 0.137 |
29 | 29 | 0.264 |
3 | 3 | 0.16 |
30 | 30 | 0.215 |
31 | 31 | 0.264 |
32 | 32 | 2.10357e-10 |
33 | 33 | 0.846 |
34 | 34 | 0.32 |
35 | 35 | 0.516 |
36 | 36 | 0.337 |
37 | 37 | 0.0787 |
38 | 38 | 0.858 |
39 | 39 | 0.273 |
4 | 4 | 0.152 |
40 | 40 | 0.579 |
41 | 41 | 0.0981 |
42 | 42 | 0.851 |
43 | 43 | 0.255 |
44 | 44 | 0.0339 |
45 | 45 | 0.245 |
46 | 46 | 0.0552 |
47 | 47 | 0.493 |
48 | 48 | 0.607 |
49 | 49 | 0.384 |
5 | 5 | 0.648 |
50 | 50 | 0.507 |
51 | 51 | 0.343 |
52 | 52 | 0.448 |
53 | 53 | 0.432 |
54 | 54 | 0.261 |
55 | 55 | 0.473 |
56 | 56 | 0.307 |
57 | 57 | 0.549 |
58 | 58 | 0.996 |
59 | 59 | 0.00377 |
6 | 6 | 0.522 |
60 | 60 | 0.496 |
61 | 61 | 0.746 |
62 | 62 | 0.559 |
63 | 63 | 0.326 |
64 | 64 | 0.499 |
65 | 65 | 0.0887 |
66 | 66 | 0.367 |
67 | 67 | 0.914 |
68 | 68 | 0.2 |
69 | 69 | 0.00558 |
7 | 7 | 0.765 |
70 | 70 | 0.243 |
71 | 71 | 0.174 |
72 | 72 | 0.795 |
73 | 73 | 0.0805 |
74 | 74 | 0.542 |
75 | 75 | 0.431 |
76 | 76 | 0.451 |
77 | 77 | 0.089 |
78 | 78 | 0.801 |
79 | 79 | 0.0122 |
8 | 8 | 0.0619 |
80 | 80 | 0.243 |
81 | 81 | 0.557 |
82 | 82 | 0.0168 |
83 | 83 | 0.807 |
84 | 84 | 0.448 |
85 | 85 | 0.11 |
86 | 86 | 0.775 |
87 | 87 | 0.853 |
88 | 88 | 0.222 |
89 | 89 | 0.0744 |
9 | 9 | 0.246 |
90 | 90 | 0.31 |
91 | 91 | 0.168 |
92 | 92 | 0.0969 |
93 | 93 | 0.675 |
94 | 94 | 0.707 |
95 | 95 | 0.408 |
96 | 96 | 0.5 |
97 | 97 | 0.568 |
98 | 98 | 0.704 |
99 | 99 | 3.57099e-4 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12019
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000123 human nucleus pulposus cell of intervertebral disc sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002564 (nucleus pulposus cell of intervertebral disc)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0011216 (organ system subdivision)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004905 (articulation)
0011135 (intervertebral cartilage)
0000075 (subdivision of skeletal system)
0002216 (symphysis)
0004765 (skeletal element)
0011134 (nonsynovial joint)
0002209 (fibrous joint)
0002213 (cartilaginous joint)
0000982 (skeletal joint)
0010317 (germ layer / neural crest derived structure)
0007844 (cartilage element)
0002242 (nucleus pulposus)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)
0011138 (post-cranial axial skeletal system)
0001130 (vertebral column)
0001066 (intervertebral disk)
0001468 (intervertebral joint)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000123 (human nucleus pulposus cell of intervertebral disc sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA