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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS008205
|DRA_sample_Accession=CAGE@SAMD00004888
|accession_numbers=CAGE;DRX008313;DRR009185;DRZ000610;DRZ001995
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004888
|accession_numbers=CAGE;DRX008313;DRR009185;DRZ000610;DRZ001995;DRZ011960;DRZ013345
|accession_numbers_RNASeq=sRNA-Seq;DRX037155;DRR041521;DRZ007163
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000312,CL:0000237,CL:0000362,CL:0002159,CL:0000255,CL:0002077
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000312,CL:0000237,CL:0000362,CL:0002159,CL:0000255,CL:0002077
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|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=1
|data_phase=2
|datafreeze_phase=1
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.47!293.37!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.09!136.01!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.96!89.92!IRF6;;chr15:101069113..101069169,-!p1@CERS3!1.81!62.94!CERS3;;chr1:6479968..6479986,-!p1@HES2!1.77!57.32!HES2;;chr6:10415276..10415341,-!p2@TFAP2A!1.76!68.57!TFAP2A;;chr3:189507432..189507459,+!p1@TP63!1.68!47.21!TP63;;chr12:54785054..54785072,-!p4@ZNF385A!1.65!49.46!ZNF385A;;chr11:34642612..34642646,+!p1@EHF!1.65!43.84!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.61!39.34!ZBED2;;chr17:7492684..7492778,-!p2@SOX15!1.56!73.06!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.50!46.08!ZNF385A;;chr6:10415484..10415508,-!p3@TFAP2A!1.50!30.35!TFAP2A;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!48.33!FOXQ1;;chr15:83953397..83953425,-!p1@BNC1!1.48!33.72!BNC1;;chr20:22565185..22565223,-!p3@FOXA2!1.43!25.85!FOXA2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.37!22.48!ZBED1;;chr17:80797886..80797906,-!p1@ZNF750!1.35!21.36!ZNF750;;chr6:10419768..10419819,-!p6@TFAP2A!1.30!19.11!TFAP2A;;chr20:22564895..22564910,-!p1@FOXA2!1.30!19.11!FOXA2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.25!146.12!PPP1R13L;;chr6:10412600..10412637,-!p1@TFAP2A!1.25!28.10!TFAP2A;;chr2:46524897..46524911,+!p2@EPAS1!1.24!44.96!EPAS1;;chr1:24645832..24645853,+!p1@GRHL3!1.22!15.74!GRHL3;;chr8:128748308..128748324,+!p2@MYC!1.19!396.78!MYC;;chr17:46132044..46132080,+!p4@NFE2L1!1.19!14.61!NFE2L1;;chr8:10588010..10588030,-!p1@SOX7!1.16!13.49!SOX7;;chr13:73633131..73633149,+!p1@KLF5!1.14!137.13!KLF5;;chr5:2751762..2751784,-!p1@IRX2!1.13!12.36!IRX2;;chr8:102504651..102504683,+!p1@GRHL2!1.13!12.36!GRHL2;;chr20:22565370..22565388,-!p2@FOXA2!1.13!12.36!FOXA2;;chr4:57547454..57547469,-!p1@HOPX!1.13!12.36!HOPX;;chr17:41623692..41623715,-!p1@ETV4!1.10!49.46!ETV4;;chr14:90085820..90085840,-!p6@FOXN3!1.09!11.24!FOXN3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.09!11.24!TFCP2L1;;chr5:2751785..2751808,-!p2@IRX2!1.09!11.24!IRX2;;chr11:65686802..65686818,+!p6@DRAP1!1.08!19.11!DRAP1;;chr14:21566731..21566836,-!p1@ZNF219!1.06!112.40!ZNF219;;chr20:55204351..55204377,+!p1@TFAP2C!1.06!13.49!TFAP2C;;chr11:65554528..65554546,+!p1@OVOL1!1.05!10.12!OVOL1;;chr3:111314230..111314241,-!p2@ZBED2!1.05!10.12!ZBED2;;chr12:48298765..48298783,-!p2@VDR!1.02!20.23!VDR;;chr17:41623009..41623053,-!p4@ETV4!1.00!14.61!ETV4;;chr11:65667846..65667868,-!p1@FOSL1!0.98!231.55!FOSL1;;chr8:128747757..128747800,+!p7@MYC!0.96!11.24!MYC;;chr15:101069102..101069112,-!p2@CERS3!0.95!7.87!CERS3;;chr17:45928443..45928473,-!p2@SP6!0.95!7.87!SP6;;chr1:209979449..209979460,-!p3@IRF6!0.95!7.87!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!0.94!21.36!HMGA2;;chr20:50721803..50721857,-!p2@ZFP64!0.90!11.24!ZFP64;;chr16:54320101..54320125,-!p4@IRX3!0.90!10.12!IRX3;;chr15:101069186..101069200,-!p4@CERS3!0.89!6.74!CERS3;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.74!TFAP2A;;chr1:24645921..24645973,+!p2@GRHL3!0.89!6.74!GRHL3;;chr10:8095593..8095625,+!p3@GATA3!0.88!7.87!GATA3;;chr12:66218212..66218244,+!p5@HMGA2!0.85!8.99!HMGA2;;chr6:106546808..106546833,+!p3@PRDM1!0.85!7.87!PRDM1;;chr11:65667884..65667895,-!p2@FOSL1!0.83!23.60!FOSL1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.82!432.75!TAX1BP3;;chr11:47236584..47236679,+!p1@DDB2!0.82!65.19!DDB2;;chr19:45579725..45579743,-!p1@ZNF296!0.82!26.98!ZNF296;;chr16:67881588..67881612,-!p2@CENPT!0.82!7.87!CENPT;;chr8:128747661..128747703,+!p6@MYC!0.82!7.87!MYC;;chr6:1312155..1312187,+!p2@FOXQ1!0.82!5.62!FOXQ1;;chr6:34524093..34524135,-!p1@SPDEF!0.82!5.62!SPDEF;;chr1:209979375..209979386,-!p4@IRF6!0.82!5.62!IRF6;;chr1:2461692..2461710,-!p1@HES5!0.82!5.62!HES5;;chr11:129245526..129245553,+!p1@BARX2!0.82!5.62!BARX2;;chr18:3447536..3447542,+!p23@TGIF1!0.82!5.62!TGIF1;;chr6:34204672..34204692,+!p1@HMGA1!0.80!654.18!HMGA1;;chr1:8938766..8938774,-!p2@ENO1!0.80!397.90!ENO1;;chr16:2059754..2059777,-!p2@ZNF598!0.80!20.23!ZNF598;;chr17:38256799..38256815,-!p3@NR1D1!0.80!10.12!NR1D1;;chr7:148892653..148892729,+!p1@ZNF282!0.78!79.81!ZNF282;;chr11:65687362..65687436,+!p3@DRAP1!0.78!24.73!DRAP1;;chr17:41622925..41622976,-!p3@ETV4!0.78!7.87!ETV4;;chr8:49833948..49833973,-!p2@SNAI2!0.77!33.72!SNAI2;;chr2:46524878..46524891,+!p3@EPAS1!0.77!8.99!EPAS1;;chr17:41623075..41623101,-!p9@ETV4!0.76!5.62!ETV4;;chr12:66218598..66218645,+!p2@HMGA2!0.75!23.60!HMGA2;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.36!DRAP1;;chr17:45928521..45928539,-!p1@SP6!0.74!4.50!SP6;;chr19:45908278..45908282,-!p5@PPP1R13L!0.74!4.50!PPP1R13L;;chr22:24093154..24093183,-!p2@ZNF70!0.74!4.50!ZNF70;;chr2:63277948..63277974,+!p1@OTX1!0.74!4.50!OTX1;;chr3:138665969..138665993,-!p2@FOXL2!0.74!4.50!FOXL2;;chr5:1887070..1887114,-!p1@IRX4!0.74!4.50!IRX4;;chr6:10419824..10419840,-!p9@TFAP2A!0.74!4.50!TFAP2A;;chr8:10588174..10588200,-!p3@SOX7!0.74!4.50!SOX7;;chr8:128748470..128748487,+!p1@MYC!0.73!539.53!MYC;;chr7:148892629..148892651,+!p2@ZNF282!0.73!29.22!ZNF282;;chr14:74353454..74353469,+!p4@ZNF410!0.73!8.99!ZNF410;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.74!ETV4;;chr1:893870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1.12!NFE2L2;;chr3:178789993..178790049,-!p5@ZMAT3!0.17!1.12!ZMAT3;;chr14:21566882..21566898,-!p3@ZNF219!0.17!1.12!ZNF219;;chr6:91006575..91006602,-!p2@BACH2!0.17!1.12!BACH2;;chr19:58666399..58666438,-!p3@ZNF329!0.17!1.12!ZNF329;;chr15:57210795..57210809,+!p8@TCF12!0.17!1.12!TCF12;;chr18:74207186..74207204,-!p3@ZNF516!0.17!1.12!ZNF516;;chr19:3366625..3366629,+!p4@NFIC!0.17!1.12!NFIC;;chr2:178129414..178129517,-!p1@NFE2L2!0.16!51.70!NFE2L2;;chr19:7580944..7581031,+!p1@ZNF358!0.16!39.34!ZNF358;;chr18:47814032..47814079,-!p1@CXXC1!0.16!23.60!CXXC1;;chr16:30798492..30798535,-!p1@ZNF629!0.16!20.23!ZNF629;;chr20:306489..306564,+!p1@SOX12!0.16!13.49!SOX12;;chr19:42724436..42724507,+!p1@ZNF526!0.16!10.12!ZNF526;;chr19:56879653..56879743,+!p1@ZNF542!0.16!8.99!ZNF542;;chr6:35227480..35227546,+!p1@ZNF76!0.16!7.87!ZNF76;;chr19:58514129..58514205,-!p1@ZNF606!0.16!6.74!ZNF606;;chr16:30621663..30621718,-!p1@ZNF689!0.16!5.62!ZNF689;;chr16:30546141..30546240,-!p1@ZNF747,p2@ZNF768!0.16!4.50!ZNF747;;chr8:128750654..128750793,+!p3@MYC!0.16!4.50!MYC;;chr2:178129358..178129403,-!p5@NFE2L2!0.16!4.50!NFE2L2;;chr19:58220517..58220583,-!p1@ZNF154!0.16!3.37!ZNF154;;chr17:38256877..38256900,-!p2@NR1D1!0.16!3.37!NR1D1;;chr15:64752804..64752842,+!p2@ZNF609!0.16!2.25!ZNF609;;chr19:12035878..12035902,+!p2@ZNF700,p2@ZNF763!0.16!2.25!ZNF700;;chr22:38598057..38598071,+!p3@MAFF!0.16!2.25!MAFF;;chr12:80084167..80084197,-!p5@PAWR!0.16!2.25!PAWR;;chr1:249153232..249153251,-!p2@ZNF692!0.16!2.25!ZNF692;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.16!2.25!ZKSCAN5;;chr6:45390442..45390479,+!p8@RUNX2!0.16!1.12!RUNX2;;chr8:67525443..67525459,-!p2@MYBL1!0.16!1.12!MYBL1;;chr22:42269885..42269899,+!p4@SREBF2!0.16!1.12!SREBF2;;chr4:81104895..81104920,+!p2@PRDM8!0.16!1.12!PRDM8;;chr19:44037334..44037365,+!p2@ZNF575!0.16!1.12!ZNF575;;chr19:57019215..57019250,+!p1@ZNF471!0.16!1.12!ZNF471;;chr1:247171316..247171336,-!p3@ZNF695!0.16!1.12!ZNF695;;chr20:48807430..48807439,+!p8@CEBPB!0.16!1.12!CEBPB;;chr12:51566592..51566617,-!p3@TFCP2!0.16!1.12!TFCP2;;chr10:3827389..3827408,-!p1@KLF6!0.15!98.91!KLF6;;chr7:139762641..139762768,-!p1@PARP12!0.15!16.86!PARP12;;chr12:8185288..8185339,+!p1@FOXJ2!0.15!12.36!FOXJ2;;chr1:151254738..151254787,+!p1@ZNF687!0.15!11.24!ZNF687;;chr19:44952635..44952668,-!p1@ZNF229!0.15!5.62!ZNF229;;chr14:74226783..74226819,-!p4@C14orf43!0.15!5.62!C14orf43;;chr19:19516543..19516559,+!p6@GATAD2A!0.15!3.37!GATAD2A;;chr19:45252008..45252024,+!p2@BCL3!0.15!3.37!BCL3;;chr4:10458982..10459007,-!p2@ZNF518B!0.15!3.37!ZNF518B;;chr11:128392309..128392350,-!p3@ETS1!0.15!2.25!ETS1;;chr17:35767301..35767344,+!p2@TADA2A!0.15!2.25!TADA2A;;chr16:30569604..30569629,-!p3@ZNF764!0.15!1.12!ZNF764;;chr18:3449695..3449712,+!p9@TGIF1!0.15!1.12!TGIF1;;chr19:35455160..35455197,-!p2@ZNF792!0.15!1.12!ZNF792;;chr3:141121847..141121868,+!p5@ZBTB38!0.15!1.12!ZBTB38;;chr5:134369905..134369972,-!p1@PITX1!0.15!1.12!PITX1;;chr8:145159277..145159282,+!p7@MAF1!0.15!1.12!MAF1;;chr8:99956662..99956684,+!p1@OSR2!0.15!1.12!OSR2;;chr19:56111614..56111634,+!p3@ZNF524!0.15!1.12!ZNF524;;chr19:56879534..56879615,+!p3@ZNF542!0.15!1.12!ZNF542;;chr1:247095162..247095173,-!p3@AHCTF1!0.15!1.12!AHCTF1;;chr1:8483723..8483752,-!p12@RERE!0.15!1.12!RERE;;chr16:89940012..89940059,+!p1@TCF25!0.14!106.78!TCF25;;chr16:31128978..31129002,+!p1@KAT8!0.14!59.57!KAT8;;chr14:75894714..75894733,+!p1@JDP2!0.14!34.84!JDP2;;chr7:4815238..4815327,+!p1@KIAA0415!0.14!26.98!AP5Z1;;chr20:62258402..62258464,-!p1@GMEB2!0.14!13.49!GMEB2;;chr19:1863591..1863611,-!p2@KLF16!0.14!11.24!KLF16;;chr19:47617013..47617069,-!p2@ZC3H4!0.14!6.74!ZC3H4;;chr19:56152437..56152467,+!p3@ZNF580!0.14!5.62!ZNF580;;chr6:41703296..41703367,-!p1@TFEB!0.14!5.62!TFEB;;chr7:149194843..149194922,-!p2@ZNF746!0.14!5.62!ZNF746;;chr3:37217736..37217753,-!p2@LRRFIP2!0.14!4.50!LRRFIP2;;chr7:17338324..17338341,+!p3@AHR!0.14!3.37!AHR;;chr17:38498594..38498661,+!p2@RARA!0.14!3.37!RARA;;chr16:67596384..67596411,+!p3@CTCF!0.14!2.25!CTCF;;chr17:61919985..61920012,-!p3@SMARCD2!0.14!2.25!SMARCD2;;chr18:3450293..3450304,+!p4@TGIF1!0.14!2.25!TGIF1;;chr19:33864571..33864596,+!p2@CEBPG!0.14!2.25!CEBPG;;chr1:226595726..226595737,-!p2@PARP1!0.14!2.25!PARP1;;chr11:12696002..12696022,+!p2@TEAD1!0.14!2.25!TEAD1;;chr14:74253834..74253862,-!p5@C14orf43!0.14!2.25!C14orf43;;chr12:6798107..6798140,-!p7@ZNF384!0.14!1.12!ZNF384;;chr14:24584138..24584192,-!p2@NRL!0.14!1.12!NRL;;chr15:77713299..77713316,+!p3@HMG20A!0.14!1.12!HMG20A;;chr16:30569652..30569668,-!p2@ZNF764!0.14!1.12!ZNF764;;chr16:67596336..67596353,+!p4@CTCF!0.14!1.12!CTCF;;chr19:11071630..11071644,+!p4@SMARCA4!0.14!1.12!SMARCA4;;chr22:38598042..38598052,+!p4@MAFF!0.14!1.12!MAFF;;chr19:49140572..49140594,-!p2@DBP!0.14!1.12!DBP;;chr19:56152471..56152482,+!p6@ZNF580!0.14!1.12!ZNF580;;chr19:56671612..56671626,+!p4@ZNF444!0.14!1.12!ZNF444;;chr1:247242107..247242120,-!p2@ZNF670!0.14!1.12!ZNF670;;chr1:27022092..27022108,+!p6@ARID1A!0.14!1.12!ARID1A;;chr1:43148855..43148908,+!p4@YBX1!0.14!1.12!YBX1;;chr1:8484294..8484307,-!p16@RERE!0.14!1.12!RERE;;chr20:49547554..49547563,-!p6@ADNP!0.14!1.12!ADNP;;chr7:128577972..128578047,+!p1@IRF5!0.14!1.12!IRF5;;chr7:148823485..148823510,+!p4@ZNF398!0.14!1.12!ZNF398;;chr17:17740287..17740307,-!p1@SREBF1!0.13!31.47!SREBF1;;chr16:31085714..31085783,+!p1@ZNF646!0.13!19.11!ZNF646;;chr6:35464817..35464894,-!p1@TEAD3!0.13!17.98!TEAD3;;chr22:41601296..41601355,+!p1@L3MBTL2!0.13!13.49!L3MBTL2;;chr19:44100728..44100804,+!p1@SRRM5,p1@ZNF576!0.13!11.24!ZNF576;;chr15:85291544..85291598,+!p2@ZNF592!0.13!6.74!ZNF592;;chr16:3450963..3451019,-!p1@ZNF434!0.13!6.74!ZNF434;;chr10:104154246..104154347,+!p3@NFKB2!0.13!6.74!NFKB2;;chr19:58400372..58400411,-!p1@ZNF814!0.13!5.62!ZNF814;;chr2:28616358..28616380,+!p3@FOSL2!0.13!5.62!FOSL2;;chr19:19496577..19496619,+!p5@GATAD2A!0.13!3.37!GATAD2A;;chr19:6110555..6110617,-!p2@RFX2!0.13!3.37!RFX2;;chr1:23694794..23694863,-!p1@ZNF436!0.13!3.37!ZNF436;;chr14:35872962..35873025,-!p3@NFKBIA!0.13!2.25!NFKBIA;;chr11:130184644..130184662,-!p5@ZBTB44!0.13!1.12!ZBTB44;;chr12:50479101..50479108,+!p3@SMARCD1!0.13!1.12!SMARCD1;;chr12:6798692..6798723,-!p5@ZNF384!0.13!1.12!ZNF384;;chr1:27022578..27022589,+!p5@ARID1A!0.13!1.12!ARID1A;;chr1:8763510..8763538,-!p15@RERE!0.13!1.12!RERE;;chr21:36260343..36260402,-!p6@RUNX1!0.13!1.12!RUNX1;;chr2:217277271..217277290,+!p3@SMARCAL1!0.13!1.12!SMARCAL1;;chr3:150126101..150126118,+!p6@TSC22D2!0.13!1.12!TSC22D2;;chr3:71114279..71114308,-!p13@FOXP1!0.13!1.12!FOXP1;;chr4:103422457..103422469,+!p3@NFKB1!0.13!1.12!NFKB1;;chr16:3185051..3185068,+!p3@ZNF213!0.13!1.12!ZNF213;;chr19:12551785..12551823,-!p1@ZNF443!0.13!1.12!ZNF443;;chr6:27356745..27356777,+!p1@ZNF391!0.13!1.12!ZNF391;;chr6:28303901..28303944,-!p2@ZNF323!0.13!1.12!ZNF323;;chr12:53845879..53845894,+!p1@PCBP2!0.12!834.02!PCBP2;;chr19:1652575..1652621,-!p1@TCF3!0.12!44.96!TCF3;;chr19:3572925..3573014,+!p1@HMG20B!0.12!34.84!HMG20B;;chr19:56152361..56152434,+!p1@ZNF580!0.12!31.47!ZNF580;;chr1:16302565..16302605,-!p1@ZBTB17!0.12!20.23!ZBTB17;;chr6:155635583..155635644,-!p1@TFB1M!0.12!14.61!TFB1M;;chr1:151319710..151319774,-!p1@RFX5!0.12!11.24!RFX5;;chr19:9546177..9546224,-!p1@ZNF266!0.12!7.87!ZNF266;;chr8:144329092..144329140,+!p1@ZFP41!0.12!7.87!ZFP41;;chrX:129244454..129244488,-!p1@ELF4!0.12!7.87!ELF4;;chr12:96588219..96588263,+!p2@ELK3!0.12!7.87!ELK3;;chr9:139294614..139294633,-!p@chr9:139294614..139294633,-!0.12!6.74!SNAPC4;;chr1:935467..935484,-!p1@HES4!0.12!4.50!HES4;;chr16:30569678..30569720,-!p1@ZNF764!0.12!3.37!ZNF764;;chr17:46125685..46125699,+!p3@NFE2L1!0.12!3.37!NFE2L1;;chr16:89787937..89787971,+!p1@ZNF276!0.12!2.25!ZNF276;;chr19:20150301..20150321,-!p1@ZNF682!0.12!2.25!ZNF682;;chr19:31840313..31840380,-!p1@TSHZ3!0.12!2.25!TSHZ3;;chr19:46271505..46271575,-!p2@SIX5!0.12!2.25!SIX5;;chr1:33938236..33938267,+!p1@ZSCAN20!0.12!2.25!ZSCAN20;;chr6:126240380..126240430,+!p2@NCOA7!0.12!2.25!NCOA7;;chr1:151431811..151431832,-!p3@POGZ!0.12!1.12!POGZ;;chr1:204042723..204042784,+!p3@SOX13!0.12!1.12!SOX13;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.12!1.12!ELK4;;chr20:48807615..48807644,+!p6@CEBPB!0.12!1.12!CEBPB;;chr15:96875657..96875760,+!p14@NR2F2!0.12!1.12!NR2F2;;chr19:11877805..11877832,+!p2@ZNF441!0.12!1.12!ZNF441;;chr9:94186085..94186096,-!p3@NFIL3!0.12!1.12!NFIL3;;chr9:137218262..137218273,+!p5@RXRA!0.12!1.12!RXRA;;chr14:64970401..64970423,-!p7@ZBTB25!0.12!1.12!ZBTB25;;chr8:102217817..102217936,-!p1@ZNF706!0.11!53.95!ZNF706;;chr2:74374995..74375055,-!p1@BOLA3!0.11!51.70!BOLA3;;chr2:220094514..220094599,+!p1@ANKZF1!0.11!33.72!ANKZF1;;chr3:179040767..179040866,+!p1@ZNF639!0.11!11.24!ZNF639;;
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.47!293.37!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.09!136.01!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.96!89.92!IRF6;;chr15:101069113..101069169,-!p1@CERS3!1.81!62.94!CERS3;;chr1:6479968..6479986,-!p1@HES2!1.77!57.32!HES2;;chr6:10415276..10415341,-!p2@TFAP2A!1.76!68.57!TFAP2A;;chr3:189507432..189507459,+!p1@TP63!1.68!47.21!TP63;;chr12:54785054..54785072,-!p4@ZNF385A!1.65!49.46!ZNF385A;;chr11:34642612..34642646,+!p1@EHF!1.65!43.84!EHF;;chr3:111314186..111314204,-!p1@ZBED2!1.61!39.34!ZBED2;;chr17:7492684..7492778,-!p2@SOX15!1.56!73.06!SOX15;;chr12:54785074..54785122,-!p2@ZNF385A!1.50!46.08!ZNF385A;;chr6:10415484..10415508,-!p3@TFAP2A!1.50!30.35!TFAP2A;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!48.33!FOXQ1;;chr15:83953397..83953425,-!p1@BNC1!1.48!33.72!BNC1;;chr20:22565185..22565223,-!p3@FOXA2!1.43!25.85!FOXA2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.37!22.48!ZBED1;;chr17:80797886..80797906,-!p1@ZNF750!1.35!21.36!ZNF750;;chr6:10419768..10419819,-!p6@TFAP2A!1.30!19.11!TFAP2A;;chr20:22564895..22564910,-!p1@FOXA2!1.30!19.11!FOXA2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.25!146.12!PPP1R13L;;chr6:10412600..10412637,-!p1@TFAP2A!1.25!28.10!TFAP2A;;chr2:46524897..46524911,+!p2@EPAS1!1.24!44.96!EPAS1;;chr1:24645832..24645853,+!p1@GRHL3!1.22!15.74!GRHL3;;chr8:128748308..128748324,+!p2@MYC!1.19!396.78!MYC;;chr17:46132044..46132080,+!p4@NFE2L1!1.19!14.61!NFE2L1;;chr8:10588010..10588030,-!p1@SOX7!1.16!13.49!SOX7;;chr13:73633131..73633149,+!p1@KLF5!1.14!137.13!KLF5;;chr5:2751762..2751784,-!p1@IRX2!1.13!12.36!IRX2;;chr8:102504651..102504683,+!p1@GRHL2!1.13!12.36!GRHL2;;chr20:22565370..22565388,-!p2@FOXA2!1.13!12.36!FOXA2;;chr4:57547454..57547469,-!p1@HOPX!1.13!12.36!HOPX;;chr17:41623692..41623715,-!p1@ETV4!1.10!49.46!ETV4;;chr14:90085820..90085840,-!p6@FOXN3!1.09!11.24!FOXN3;;chr2:122042770..122042785,-!p1@TFCP2L1!1.09!11.24!TFCP2L1;;chr5:2751785..2751808,-!p2@IRX2!1.09!11.24!IRX2;;chr11:65686802..65686818,+!p6@DRAP1!1.08!19.11!DRAP1;;chr14:21566731..21566836,-!p1@ZNF219!1.06!112.40!ZNF219;;chr20:55204351..55204377,+!p1@TFAP2C!1.06!13.49!TFAP2C;;chr11:65554528..65554546,+!p1@OVOL1!1.05!10.12!OVOL1;;chr3:111314230..111314241,-!p2@ZBED2!1.05!10.12!ZBED2;;chr12:48298765..48298783,-!p2@VDR!1.02!20.23!VDR;;chr17:41623009..41623053,-!p4@ETV4!1.00!14.61!ETV4;;chr11:65667846..65667868,-!p1@FOSL1!0.98!231.55!FOSL1;;chr8:128747757..128747800,+!p7@MYC!0.96!11.24!MYC;;chr15:101069102..101069112,-!p2@CERS3!0.95!7.87!CERS3;;chr17:45928443..45928473,-!p2@SP6!0.95!7.87!SP6;;chr1:209979449..209979460,-!p3@IRF6!0.95!7.87!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!0.94!21.36!HMGA2;;chr20:50721803..50721857,-!p2@ZFP64!0.90!11.24!ZFP64;;chr16:54320101..54320125,-!p4@IRX3!0.90!10.12!IRX3;;chr15:101069186..101069200,-!p4@CERS3!0.89!6.74!CERS3;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.74!TFAP2A;;chr1:24645921..24645973,+!p2@GRHL3!0.89!6.74!GRHL3;;chr10:8095593..8095625,+!p3@GATA3!0.88!7.87!GATA3;;chr12:66218212..66218244,+!p5@HMGA2!0.85!8.99!HMGA2;;chr6:106546808..106546833,+!p3@PRDM1!0.85!7.87!PRDM1;;chr11:65667884..65667895,-!p2@FOSL1!0.83!23.60!FOSL1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.82!432.75!TAX1BP3;;chr11:47236584..47236679,+!p1@DDB2!0.82!65.19!DDB2;;chr19:45579725..45579743,-!p1@ZNF296!0.82!26.98!ZNF296;;chr16:67881588..67881612,-!p2@CENPT!0.82!7.87!CENPT;;chr8:128747661..128747703,+!p6@MYC!0.82!7.87!MYC;;chr6:1312155..1312187,+!p2@FOXQ1!0.82!5.62!FOXQ1;;chr6:34524093..34524135,-!p1@SPDEF!0.82!5.62!SPDEF;;chr1:209979375..209979386,-!p4@IRF6!0.82!5.62!IRF6;;chr1:2461692..2461710,-!p1@HES5!0.82!5.62!HES5;;chr11:129245526..129245553,+!p1@BARX2!0.82!5.62!BARX2;;chr18:3447536..3447542,+!p23@TGIF1!0.82!5.62!TGIF1;;chr6:34204672..34204692,+!p1@HMGA1!0.80!654.18!HMGA1;;chr1:8938766..8938774,-!p2@ENO1!0.80!397.90!ENO1;;chr16:2059754..2059777,-!p2@ZNF598!0.80!20.23!ZNF598;;chr17:38256799..38256815,-!p3@NR1D1!0.80!10.12!NR1D1;;chr7:148892653..148892729,+!p1@ZNF282!0.78!79.81!ZNF282;;chr11:65687362..65687436,+!p3@DRAP1!0.78!24.73!DRAP1;;chr17:41622925..41622976,-!p3@ETV4!0.78!7.87!ETV4;;chr8:49833948..49833973,-!p2@SNAI2!0.77!33.72!SNAI2;;chr2:46524878..46524891,+!p3@EPAS1!0.77!8.99!EPAS1;;chr17:41623075..41623101,-!p9@ETV4!0.76!5.62!ETV4;;chr12:66218598..66218645,+!p2@HMGA2!0.75!23.60!HMGA2;;chr11:65686732..65686756,+!p2@DRAP1!0.75!21.36!DRAP1;;chr17:45928521..45928539,-!p1@SP6!0.74!4.50!SP6;;chr19:45908278..45908282,-!p5@PPP1R13L!0.74!4.50!PPP1R13L;;chr22:24093154..24093183,-!p2@ZNF70!0.74!4.50!ZNF70;;chr2:63277948..63277974,+!p1@OTX1!0.74!4.50!OTX1;;chr3:138665969..138665993,-!p2@FOXL2!0.74!4.50!FOXL2;;chr5:1887070..1887114,-!p1@IRX4!0.74!4.50!IRX4;;chr6:10419824..10419840,-!p9@TFAP2A!0.74!4.50!TFAP2A;;chr8:10588174..10588200,-!p3@SOX7!0.74!4.50!SOX7;;chr8:128748470..128748487,+!p1@MYC!0.73!539.53!MYC;;chr7:148892629..148892651,+!p2@ZNF282!0.73!29.22!ZNF282;;chr14:74353454..74353469,+!p4@ZNF410!0.73!8.99!ZNF410;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.74!ETV4;;chr1:893870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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000312;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000362;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002077;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002159;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001003;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000357,CL:0000114,CL:0000221
|ffid_belonging_in_development=CL:0000357,CL:0000114,CL:0000221
|fonse_cell_line=
|fonse_cell_line=
Line 41: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor2.CNhs11381.11349-117G8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor2.CNhs11381.11349-117G8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor2.CNhs11381.11349-117G8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor2.CNhs11381.11349-117G8.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520epidermal%252c%2520donor2.CNhs11381.11349-117G8.hg38.nobarcode.ctss.bed.gz
|id=FF:11349-117G8
|id=FF:11349-117G8
|is_a=EFO:0002091;;FF:0000082
|is_a=EFO:0002091;;FF:0000082
|is_obsolete=
|is_obsolete=
|library_id=CNhs11381
|library_id=CNhs11381
|library_id_phase_based=1:CNhs11381
|library_id_phase_based=2:CNhs11381
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11349
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10010.AGTTCC.11349
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11349
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10010.AGTTCC.11349
|name=Keratinocyte - epidermal, donor2
|name=Keratinocyte - epidermal, donor2
|namespace=FANTOM5
|namespace=FANTOM5
Line 51: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11381,LSID771,release012,COMPLETED
|profile_hcage=CNhs11381,LSID771,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10010,,,
|profile_srnaseq=SRhi10010,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|sample_category=primary cells
Line 90: Line 106:
|top_motifs=TP53:2.51545230319;PPARG:2.27346256217;ZEB1:2.15301975065;TBX4,5:2.00750189564;ZNF148:1.7945290705;SNAI1..3:1.57509366516;TBP:1.5620903366;GLI1..3:1.5449305188;NANOG:1.53961847775;bHLH_family:1.52887580228;MYOD1:1.33645147312;NR5A1,2:1.30205302014;CRX:1.15205933149;POU2F1..3:1.14513806639;STAT5{A,B}:1.077727078;LMO2:1.06447874245;ONECUT1,2:0.958232374261;HOX{A5,B5}:0.951645392073;PAX1,9:0.937955221839;HLF:0.926053064931;CEBPA,B_DDIT3:0.924249401036;ZNF423:0.842161084257;PDX1:0.834890089932;FOS_FOS{B,L1}_JUN{B,D}:0.794123755801;HAND1,2:0.758555544893;TEAD1:0.739087405416;HES1:0.718206822044;GFI1B:0.701601078284;VSX1,2:0.687816522722;POU1F1:0.656128000638;BACH2:0.621460549588;GTF2A1,2:0.613904233589;NKX3-2:0.606672582679;TFCP2:0.591715848624;ADNP_IRX_SIX_ZHX:0.574961122588;EP300:0.565133503746;NKX2-3_NKX2-5:0.529181141691;LHX3,4:0.490667573444;PAX8:0.459198780145;IKZF1:0.452559440283;LEF1_TCF7_TCF7L1,2:0.4278869969;TFAP2{A,C}:0.40544435717;FOSL2:0.405061351356;ARID5B:0.387999162922;ZNF238:0.329542828449;TLX1..3_NFIC{dimer}:0.321893823587;NFIL3:0.318572930838;NFE2:0.281116110205;XCPE1{core}:0.261751304586;REST:0.246017138936;FOXM1:0.244815682714;PBX1:0.220962174928;MTF1:0.213529143545;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.184861263477;EBF1:0.182195132888;SOX17:0.1814695807;T:0.157535030232;GZF1:0.152651262395;NFE2L1:0.130025398645;PAX4:0.127540808171;NR1H4:0.123709389942;SP1:0.123177783758;AR:0.120261175931;GATA6:0.0392340804147;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0358177542844;NFKB1_REL_RELA:0.0328369192321;POU5F1:0.0287891662689;NFIX:0.0257744271979;CDC5L:-0.00240587971539;RORA:-0.00558321020303;PITX1..3:-0.00870623031909;SMAD1..7,9:-0.0114021580676;POU3F1..4:-0.0130285720308;GCM1,2:-0.0350538186701;HMX1:-0.0401833774082;FOX{I1,J2}:-0.040634525011;ESRRA:-0.0593372779443;PAX2:-0.0646641670438;ELK1,4_GABP{A,B1}:-0.0703735819902;HNF1A:-0.0705310210362;RXRA_VDR{dimer}:-0.085264186526;POU6F1:-0.0891865722328;TFAP4:-0.0910365351378;HIF1A:-0.0927786120031;FOX{F1,F2,J1}:-0.105935074318;ZIC1..3:-0.109095704921;YY1:-0.126174149158;HNF4A_NR2F1,2:-0.142707899466;FOXQ1:-0.14379838093;HOX{A4,D4}:-0.154748148848;OCT4_SOX2{dimer}:-0.157371756862;JUN:-0.15952822649;ETS1,2:-0.189238549701;ATF2:-0.191697345139;FOXA2:-0.211140595665;SPZ1:-0.214588068742;ESR1:-0.2667485604;GFI1:-0.266817012983;NR3C1:-0.300621471384;RREB1:-0.322621707925;NFE2L2:-0.333836892551;ZBTB6:-0.343494038732;NKX2-1,4:-0.351717313347;SOX{8,9,10}:-0.353080258311;MYB:-0.35735425593;SPIB:-0.36148665715;HOX{A6,A7,B6,B7}:-0.373473762277;FOXL1:-0.402388382111;ATF5_CREB3:-0.417993057224;RFX1:-0.420102485636;RUNX1..3:-0.427111108884;STAT2,4,6:-0.436669822119;SOX2:-0.44914495627;NKX2-2,8:-0.462166147275;UFEwm:-0.472458561898;IRF7:-0.487644051735;TAL1_TCF{3,4,12}:-0.503003457269;MEF2{A,B,C,D}:-0.505099009004;ELF1,2,4:-0.5182708449;CREB1:-0.530601710128;KLF4:-0.532795862175;SPI1:-0.537112791418;HIC1:-0.552926040695;GTF2I:-0.566526222002;CUX2:-0.577621280672;TEF:-0.582499328766;MAFB:-0.584125299332;PRRX1,2:-0.584611625038;SRF:-0.598140425607;MAZ:-0.598156397382;ZNF143:-0.602861824104;ATF4:-0.632777465341;PAX6:-0.634012109212;HOXA9_MEIS1:-0.64744966239;NR6A1:-0.648555681204;NFY{A,B,C}:-0.661046242953;SOX5:-0.674548016252;EN1,2:-0.687620773949;TFAP2B:-0.693403188191;TLX2:-0.699653620366;ALX4:-0.702320008717;E2F1..5:-0.709292639925;MYFfamily:-0.720125678341;RFX2..5_RFXANK_RFXAP:-0.753910196365;NHLH1,2:-0.771796149883;MED-1{core}:-0.774801556888;TFDP1:-0.833654634964;XBP1:-0.847938166393;NFATC1..3:-0.85475849286;AHR_ARNT_ARNT2:-0.858855310608;RXR{A,B,G}:-0.910152868235;FOX{D1,D2}:-0.914925749413;RBPJ:-0.92926143841;FOXP3:-0.935134698407;DBP:-0.974390970833;ZNF384:-0.991882483708;TOPORS:-1.00105765833;NRF1:-1.01068596919;AIRE:-1.03009233398;MYBL2:-1.03196879405;TGIF1:-1.09116329454;PAX5:-1.09122426457;EGR1..3:-1.1188096884;MTE{core}:-1.12278400691;ATF6:-1.12537021971;EVI1:-1.13391596374;ZFP161:-1.16572052359;ALX1:-1.20175936104;PRDM1:-1.20919349199;ZBTB16:-1.22428305271;FOXN1:-1.23856772235;GATA4:-1.25176021173;HSF1,2:-1.26207511226;NANOG{mouse}:-1.32167654529;IRF1,2:-1.36608058307;CDX1,2,4:-1.36998885784;MZF1:-1.39927336514;PATZ1:-1.40796767205;BREu{core}:-1.43105137943;SREBF1,2:-1.52308317794;NKX6-1,2:-1.60204276116;FOXO1,3,4:-1.60666976731;HMGA1,2:-1.61438080543;STAT1,3:-1.62193571527;FOXP1:-1.63390786529;DMAP1_NCOR{1,2}_SMARC:-1.64240707619;BPTF:-1.65026279534;NKX3-1:-1.67138756753;PAX3,7:-1.71347822164;HBP1_HMGB_SSRP1_UBTF:-2.07136949864;FOXD3:-2.44737900181;IKZF2:-2.64194737002
|top_motifs=TP53:2.51545230319;PPARG:2.27346256217;ZEB1:2.15301975065;TBX4,5:2.00750189564;ZNF148:1.7945290705;SNAI1..3:1.57509366516;TBP:1.5620903366;GLI1..3:1.5449305188;NANOG:1.53961847775;bHLH_family:1.52887580228;MYOD1:1.33645147312;NR5A1,2:1.30205302014;CRX:1.15205933149;POU2F1..3:1.14513806639;STAT5{A,B}:1.077727078;LMO2:1.06447874245;ONECUT1,2:0.958232374261;HOX{A5,B5}:0.951645392073;PAX1,9:0.937955221839;HLF:0.926053064931;CEBPA,B_DDIT3:0.924249401036;ZNF423:0.842161084257;PDX1:0.834890089932;FOS_FOS{B,L1}_JUN{B,D}:0.794123755801;HAND1,2:0.758555544893;TEAD1:0.739087405416;HES1:0.718206822044;GFI1B:0.701601078284;VSX1,2:0.687816522722;POU1F1:0.656128000638;BACH2:0.621460549588;GTF2A1,2:0.613904233589;NKX3-2:0.606672582679;TFCP2:0.591715848624;ADNP_IRX_SIX_ZHX:0.574961122588;EP300:0.565133503746;NKX2-3_NKX2-5:0.529181141691;LHX3,4:0.490667573444;PAX8:0.459198780145;IKZF1:0.452559440283;LEF1_TCF7_TCF7L1,2:0.4278869969;TFAP2{A,C}:0.40544435717;FOSL2:0.405061351356;ARID5B:0.387999162922;ZNF238:0.329542828449;TLX1..3_NFIC{dimer}:0.321893823587;NFIL3:0.318572930838;NFE2:0.281116110205;XCPE1{core}:0.261751304586;REST:0.246017138936;FOXM1:0.244815682714;PBX1:0.220962174928;MTF1:0.213529143545;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.184861263477;EBF1:0.182195132888;SOX17:0.1814695807;T:0.157535030232;GZF1:0.152651262395;NFE2L1:0.130025398645;PAX4:0.127540808171;NR1H4:0.123709389942;SP1:0.123177783758;AR:0.120261175931;GATA6:0.0392340804147;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0358177542844;NFKB1_REL_RELA:0.0328369192321;POU5F1:0.0287891662689;NFIX:0.0257744271979;CDC5L:-0.00240587971539;RORA:-0.00558321020303;PITX1..3:-0.00870623031909;SMAD1..7,9:-0.0114021580676;POU3F1..4:-0.0130285720308;GCM1,2:-0.0350538186701;HMX1:-0.0401833774082;FOX{I1,J2}:-0.040634525011;ESRRA:-0.0593372779443;PAX2:-0.0646641670438;ELK1,4_GABP{A,B1}:-0.0703735819902;HNF1A:-0.0705310210362;RXRA_VDR{dimer}:-0.085264186526;POU6F1:-0.0891865722328;TFAP4:-0.0910365351378;HIF1A:-0.0927786120031;FOX{F1,F2,J1}:-0.105935074318;ZIC1..3:-0.109095704921;YY1:-0.126174149158;HNF4A_NR2F1,2:-0.142707899466;FOXQ1:-0.14379838093;HOX{A4,D4}:-0.154748148848;OCT4_SOX2{dimer}:-0.157371756862;JUN:-0.15952822649;ETS1,2:-0.189238549701;ATF2:-0.191697345139;FOXA2:-0.211140595665;SPZ1:-0.214588068742;ESR1:-0.2667485604;GFI1:-0.266817012983;NR3C1:-0.300621471384;RREB1:-0.322621707925;NFE2L2:-0.333836892551;ZBTB6:-0.343494038732;NKX2-1,4:-0.351717313347;SOX{8,9,10}:-0.353080258311;MYB:-0.35735425593;SPIB:-0.36148665715;HOX{A6,A7,B6,B7}:-0.373473762277;FOXL1:-0.402388382111;ATF5_CREB3:-0.417993057224;RFX1:-0.420102485636;RUNX1..3:-0.427111108884;STAT2,4,6:-0.436669822119;SOX2:-0.44914495627;NKX2-2,8:-0.462166147275;UFEwm:-0.472458561898;IRF7:-0.487644051735;TAL1_TCF{3,4,12}:-0.503003457269;MEF2{A,B,C,D}:-0.505099009004;ELF1,2,4:-0.5182708449;CREB1:-0.530601710128;KLF4:-0.532795862175;SPI1:-0.537112791418;HIC1:-0.552926040695;GTF2I:-0.566526222002;CUX2:-0.577621280672;TEF:-0.582499328766;MAFB:-0.584125299332;PRRX1,2:-0.584611625038;SRF:-0.598140425607;MAZ:-0.598156397382;ZNF143:-0.602861824104;ATF4:-0.632777465341;PAX6:-0.634012109212;HOXA9_MEIS1:-0.64744966239;NR6A1:-0.648555681204;NFY{A,B,C}:-0.661046242953;SOX5:-0.674548016252;EN1,2:-0.687620773949;TFAP2B:-0.693403188191;TLX2:-0.699653620366;ALX4:-0.702320008717;E2F1..5:-0.709292639925;MYFfamily:-0.720125678341;RFX2..5_RFXANK_RFXAP:-0.753910196365;NHLH1,2:-0.771796149883;MED-1{core}:-0.774801556888;TFDP1:-0.833654634964;XBP1:-0.847938166393;NFATC1..3:-0.85475849286;AHR_ARNT_ARNT2:-0.858855310608;RXR{A,B,G}:-0.910152868235;FOX{D1,D2}:-0.914925749413;RBPJ:-0.92926143841;FOXP3:-0.935134698407;DBP:-0.974390970833;ZNF384:-0.991882483708;TOPORS:-1.00105765833;NRF1:-1.01068596919;AIRE:-1.03009233398;MYBL2:-1.03196879405;TGIF1:-1.09116329454;PAX5:-1.09122426457;EGR1..3:-1.1188096884;MTE{core}:-1.12278400691;ATF6:-1.12537021971;EVI1:-1.13391596374;ZFP161:-1.16572052359;ALX1:-1.20175936104;PRDM1:-1.20919349199;ZBTB16:-1.22428305271;FOXN1:-1.23856772235;GATA4:-1.25176021173;HSF1,2:-1.26207511226;NANOG{mouse}:-1.32167654529;IRF1,2:-1.36608058307;CDX1,2,4:-1.36998885784;MZF1:-1.39927336514;PATZ1:-1.40796767205;BREu{core}:-1.43105137943;SREBF1,2:-1.52308317794;NKX6-1,2:-1.60204276116;FOXO1,3,4:-1.60666976731;HMGA1,2:-1.61438080543;STAT1,3:-1.62193571527;FOXP1:-1.63390786529;DMAP1_NCOR{1,2}_SMARC:-1.64240707619;BPTF:-1.65026279534;NKX3-1:-1.67138756753;PAX3,7:-1.71347822164;HBP1_HMGB_SSRP1_UBTF:-2.07136949864;FOXD3:-2.44737900181;IKZF2:-2.64194737002
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11349-117G8;search_select_hide=table117:FF:11349-117G8
}}
}}

Latest revision as of 17:54, 4 June 2020

Name:Keratinocyte - epidermal, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11381
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stage47 years old adult
sexfemale
age47
cell typekeratinocyte
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number1331
catalog numberCA102-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004888
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11381 CAGE DRX008313 DRR009185
Accession ID Hg19

Library idBAMCTSS
CNhs11381 DRZ000610 DRZ001995
Accession ID Hg38

Library idBAMCTSS
CNhs11381 DRZ011960 DRZ013345
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004888
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10010.AGTTCC sRNA-Seq DRX037155 DRR041521
Accession ID Hg19

Library idBAMCTSS
SRhi10010.AGTTCC DRZ007163


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.182
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.235
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.033
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.357
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.281
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.425
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.74
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.411
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal1.224
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.692
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0.327
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0969
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11381

Jaspar motifP-value
MA0002.20.0821
MA0003.10.309
MA0004.10.649
MA0006.10.399
MA0007.10.199
MA0009.10.0302
MA0014.10.676
MA0017.10.116
MA0018.20.0536
MA0019.10.595
MA0024.10.0249
MA0025.10.917
MA0027.10.6
MA0028.10.943
MA0029.10.235
MA0030.10.416
MA0031.10.0929
MA0035.20.117
MA0038.10.816
MA0039.20.0193
MA0040.10.669
MA0041.10.437
MA0042.10.899
MA0043.10.742
MA0046.10.181
MA0047.20.455
MA0048.10.97
MA0050.11.28438e-6
MA0051.11.26033e-4
MA0052.10.927
MA0055.10.174
MA0057.10.0468
MA0058.10.74
MA0059.10.0348
MA0060.10.175
MA0061.10.298
MA0062.20.747
MA0065.20.00458
MA0066.10.00617
MA0067.10.346
MA0068.19.62886e-4
MA0069.10.513
MA0070.10.325
MA0071.10.602
MA0072.10.306
MA0073.10.677
MA0074.10.97
MA0076.10.434
MA0077.10.851
MA0078.10.495
MA0079.20.839
MA0080.20.114
MA0081.10.549
MA0083.10.972
MA0084.10.268
MA0087.10.874
MA0088.10.247
MA0090.10.0428
MA0091.10.689
MA0092.10.303
MA0093.10.699
MA0099.22.90096e-14
MA0100.10.197
MA0101.10.586
MA0102.20.265
MA0103.14.76312e-5
MA0104.20.292
MA0105.10.157
MA0106.15.50562e-7
MA0107.10.478
MA0108.20.00889
MA0111.10.717
MA0112.20.00563
MA0113.10.209
MA0114.10.0495
MA0115.10.525
MA0116.10.0194
MA0117.10.534
MA0119.10.0941
MA0122.10.608
MA0124.10.742
MA0125.10.273
MA0131.10.218
MA0135.10.0931
MA0136.10.701
MA0137.20.0865
MA0138.20.175
MA0139.10.218
MA0140.10.114
MA0141.10.221
MA0142.10.0144
MA0143.10.731
MA0144.10.999
MA0145.10.0702
MA0146.10.0767
MA0147.10.168
MA0148.10.121
MA0149.10.00684
MA0150.10.0884
MA0152.10.238
MA0153.10.178
MA0154.10.0511
MA0155.10.513
MA0156.10.894
MA0157.10.545
MA0159.10.0789
MA0160.10.183
MA0162.10.125
MA0163.10.0267
MA0164.10.601
MA0258.10.0338
MA0259.10.675



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11381

Novel motifP-value
10.26
100.706
1000.528
1010.584
1020.466
1030.0815
1040.291
1050.015
1060.0225
1070.0298
1080.422
1090.0103
110.0883
1100.0931
1110.492
1120.34
1130.649
1140.149
1150.925
1160.385
1170.251
1180.714
1190.164
120.457
1200.233
1210.642
1220.156
1230.471
1240.758
1250.29
1260.596
1270.0464
1280.199
1290.183
130.0574
1300.977
1310.334
1320.76
1330.0248
1340.326
1350.609
1360.626
1370.994
1380.284
1390.133
140.847
1400.219
1410.205
1420.116
1430.128
1440.64
1450.124
1460.044
1470.359
1480.906
1490.556
150.19
1500.289
1510.345
1520.0439
1530.612
1540.996
1550.677
1560.299
1570.665
1580.568
1590.74
160.0915
1600.0723
1610.315
1620.134
1630.541
1640.466
1650.985
1660.815
1670.243
1680.397
1690.0461
170.136
180.0316
190.38
20.239
200.93
210.673
220.223
230.244
240.0998
250.948
260.19
270.383
280.693
290.324
30.333
300.349
310.545
320.511
330.246
340.579
350.879
360.322
370.232
380.261
390.304
40.431
400.01
410.657
420.453
430.208
440.666
450.264
460.164
470.219
480.0965
490.273
50.478
500.573
510.611
520.34
531
540.62
550.462
560.26
570.121
580.456
590.0736
60.859
600.0751
610.501
620.451
630.115
640.209
650.148
660.327
670.671
680.828
690.102
70.2
700.00229
710.0795
720.625
730.0339
740.105
750.129
760.919
770.0539
780.197
790.928
80.0896
800.548
810.608
820.368
830.645
840.552
850.128
860.958
870.121
880.214
890.0125
90.656
900.882
910.477
920.417
930.886
940.532
950.0931
960.803
970.927
980.0753
990.07



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11381


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000312 (keratinocyte)
0000237 (keratinizing barrier epithelial cell)
0000362 (epidermal cell)
0002159 (general ecto-epithelial cell)
0000255 (eukaryotic cell)
0002077 (ecto-epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000082 (human epidermal keratinocyte sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000357 (stratified epithelial stem cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)

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