FF:10851-111F5: Difference between revisions

Latest revision as of 15:09, 3 June 2020

Name:	mesothelioma cell line:Mero-41
Species:	Human (Homo sapiens)
Library ID:	CNhs13067
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	mesothelium
dev stage	NA
sex	male
age	60
cell type	mesothelial cell
cell line	Mero-41
company	ECACC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005438

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13067		CAGE		DRX007940		DRR008812

Accession ID Hg19

Library id		BAM		CTSS
CNhs13067		DRZ000237		DRZ001622

Accession ID Hg38

Library id		BAM		CTSS
CNhs13067		DRZ011587		DRZ012972

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0301
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.413
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.571
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0355
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.135
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.069
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0887
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0507
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0584
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.162
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.34
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.012
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0157
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.529
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.225
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0887
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0887
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0887
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.596
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.28
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.12
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13067

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.244
MA0003.1	MA0003.1	0.324
MA0004.1	MA0004.1	0.678
MA0006.1	MA0006.1	0.318
MA0007.1	MA0007.1	0.695
MA0009.1	MA0009.1	0.76
MA0014.1	MA0014.1	0.351
MA0017.1	MA0017.1	0.697
MA0018.2	MA0018.2	1.73242e-6
MA0019.1	MA0019.1	0.891
MA0024.1	MA0024.1	4.64257e-5
MA0025.1	MA0025.1	0.00203
MA0027.1	MA0027.1	0.598
MA0028.1	MA0028.1	0.0436
MA0029.1	MA0029.1	0.963
MA0030.1	MA0030.1	0.0159
MA0031.1	MA0031.1	0.00479
MA0035.2	MA0035.2	0.573
MA0038.1	MA0038.1	0.726
MA0039.2	MA0039.2	0.79
MA0040.1	MA0040.1	0.92
MA0041.1	MA0041.1	0.86
MA0042.1	MA0042.1	0.79
MA0043.1	MA0043.1	1.66743e-9
MA0046.1	MA0046.1	0.383
MA0047.2	MA0047.2	0.0304
MA0048.1	MA0048.1	0.0017
MA0050.1	MA0050.1	0.314
MA0051.1	MA0051.1	0.387
MA0052.1	MA0052.1	0.00149
MA0055.1	MA0055.1	0.00436
MA0057.1	MA0057.1	0.144
MA0058.1	MA0058.1	0.155
MA0059.1	MA0059.1	0.0815
MA0060.1	MA0060.1	0.258
MA0061.1	MA0061.1	0.337
MA0062.2	MA0062.2	0.586
MA0065.2	MA0065.2	0.117
MA0066.1	MA0066.1	0.375
MA0067.1	MA0067.1	6.87172e-4
MA0068.1	MA0068.1	8.43059e-5
MA0069.1	MA0069.1	0.769
MA0070.1	MA0070.1	0.605
MA0071.1	MA0071.1	0.589
MA0072.1	MA0072.1	0.132
MA0073.1	MA0073.1	0.705
MA0074.1	MA0074.1	0.759
MA0076.1	MA0076.1	0.829
MA0077.1	MA0077.1	0.368
MA0078.1	MA0078.1	0.86
MA0079.2	MA0079.2	0.0218
MA0080.2	MA0080.2	2.94732e-12
MA0081.1	MA0081.1	0.0044
MA0083.1	MA0083.1	0.365
MA0084.1	MA0084.1	0.414
MA0087.1	MA0087.1	0.401
MA0088.1	MA0088.1	0.00249
MA0090.1	MA0090.1	0.00302
MA0091.1	MA0091.1	0.964
MA0092.1	MA0092.1	0.248
MA0093.1	MA0093.1	0.799
MA0099.2	MA0099.2	0.179
MA0100.1	MA0100.1	0.731
MA0101.1	MA0101.1	0.254
MA0102.2	MA0102.2	5.50757e-4
MA0103.1	MA0103.1	0.465
MA0104.2	MA0104.2	0.343
MA0105.1	MA0105.1	0.679
MA0106.1	MA0106.1	0.0264
MA0107.1	MA0107.1	0.109
MA0108.2	MA0108.2	0.0169
MA0111.1	MA0111.1	0.846
MA0112.2	MA0112.2	0.00897
MA0113.1	MA0113.1	0.515
MA0114.1	MA0114.1	0.0866
MA0115.1	MA0115.1	0.172
MA0116.1	MA0116.1	0.959
MA0117.1	MA0117.1	0.929
MA0119.1	MA0119.1	0.00765
MA0122.1	MA0122.1	0.514
MA0124.1	MA0124.1	0.56
MA0125.1	MA0125.1	0.749
MA0131.1	MA0131.1	0.877
MA0135.1	MA0135.1	0.00612
MA0136.1	MA0136.1	2.01726e-9
MA0137.2	MA0137.2	0.504
MA0138.2	MA0138.2	0.0839
MA0139.1	MA0139.1	0.683
MA0140.1	MA0140.1	0.662
MA0141.1	MA0141.1	0.532
MA0142.1	MA0142.1	0.386
MA0143.1	MA0143.1	0.976
MA0144.1	MA0144.1	0.909
MA0145.1	MA0145.1	0.212
MA0146.1	MA0146.1	0.872
MA0147.1	MA0147.1	0.135
MA0148.1	MA0148.1	0.106
MA0149.1	MA0149.1	0.0833
MA0150.1	MA0150.1	0.155
MA0152.1	MA0152.1	0.74
MA0153.1	MA0153.1	0.251
MA0154.1	MA0154.1	0.949
MA0155.1	MA0155.1	0.931
MA0156.1	MA0156.1	0.00178
MA0157.1	MA0157.1	0.0324
MA0159.1	MA0159.1	0.736
MA0160.1	MA0160.1	0.886
MA0162.1	MA0162.1	0.392
MA0163.1	MA0163.1	0.311
MA0164.1	MA0164.1	0.314
MA0258.1	MA0258.1	0.348
MA0259.1	MA0259.1	0.863

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13067

Novel motif	Logo	P-value
1	1	0.32
10	10	0.423
100	100	0.14
101	101	0.236
102	102	0.314
103	103	0.272
104	104	0.752
105	105	0.0248
106	106	0.577
107	107	0.0454
108	108	0.887
109	109	0.0826
11	11	0.793
110	110	0.546
111	111	0.994
112	112	0.762
113	113	0.00921
114	114	0.402
115	115	0.309
116	116	0.453
117	117	0.891
118	118	0.488
119	119	0.301
12	12	0.774
120	120	0.276
121	121	0.663
122	122	0.422
123	123	0.0839
124	124	0.0168
125	125	0.934
126	126	0.703
127	127	0.77
128	128	0.228
129	129	0.963
13	13	0.0989
130	130	0.431
131	131	0.916
132	132	0.937
133	133	0.0788
134	134	0.458
135	135	0.42
136	136	0.156
137	137	0.136
138	138	0.97
139	139	0.0824
14	14	0.319
140	140	0.221
141	141	0.758
142	142	0.606
143	143	0.226
144	144	0.491
145	145	0.571
146	146	0.656
147	147	0.242
148	148	0.411
149	149	0.841
15	15	0.404
150	150	0.0326
151	151	0.264
152	152	0.179
153	153	0.417
154	154	0.966
155	155	0.0127
156	156	0.173
157	157	0.18
158	158	0.133
159	159	0.781
16	16	0.146
160	160	0.312
161	161	0.532
162	162	0.934
163	163	0.804
164	164	0.00787
165	165	0.817
166	166	0.289
167	167	0.308
168	168	0.397
169	169	0.0169
17	17	0.808
18	18	0.144
19	19	0.7
2	2	0.711
20	20	0.996
21	21	0.0726
22	22	0.923
23	23	0.837
24	24	0.621
25	25	0.762
26	26	0.172
27	27	0.848
28	28	0.622
29	29	0.00509
3	3	0.281
30	30	0.649
31	31	0.634
32	32	0.035
33	33	0.305
34	34	0.166
35	35	0.335
36	36	0.837
37	37	0.92
38	38	0.868
39	39	0.963
4	4	0.372
40	40	0.255
41	41	0.0927
42	42	0.244
43	43	0.452
44	44	0.313
45	45	0.253
46	46	0.501
47	47	0.619
48	48	0.544
49	49	0.361
5	5	0.849
50	50	0.96
51	51	0.585
52	52	0.51
53	53	0.466
54	54	0.996
55	55	0.796
56	56	0.495
57	57	0.0624
58	58	0.238
59	59	0.601
6	6	0.918
60	60	0.439
61	61	0.929
62	62	0.577
63	63	0.641
64	64	0.848
65	65	0.911
66	66	0.415
67	67	0.78
68	68	0.861
69	69	0.971
7	7	0.956
70	70	0.268
71	71	0.00743
72	72	0.691
73	73	0.338
74	74	0.0135
75	75	0.742
76	76	0.433
77	77	0.212
78	78	0.44
79	79	0.0574
8	8	0.0572
80	80	0.114
81	81	0.0534
82	82	1
83	83	0.796
84	84	0.49
85	85	0.55
86	86	0.0649
87	87	0.192
88	88	0.506
89	89	0.354
9	9	0.333
90	90	0.436
91	91	0.596
92	92	0.561
93	93	0.751
94	94	0.472
95	95	0.801
96	96	0.647
97	97	0.88
98	98	0.099
99	99	0.0417

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13067

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102424 mesothelioma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000213 (lining cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000077 (mesothelial cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102424 (mesothelioma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007834
+|DRA_sample_Accession=CAGE@SAMD00005438
-|accession_numbers=CAGE;DRX007940;DRR008812;DRZ000237;DRZ001622
+|accession_numbers=CAGE;DRX007940;DRR008812;DRZ000237;DRZ001622;DRZ011587;DRZ012972
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000213,CL:0000215,CL:0000255,CL:0000077
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:30433396..30433414,-!p1@FOXS1!2.01!102.02!FOXS1;;chr6:10415276..10415341,-!p2@TFAP2A!1.71!60.76!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.59!61.44!TFAP2A;;chr3:12330560..12330579,+!p1@PPARG!1.37!25.84!PPARG;;chr6:1389789..1389821,+!p1@FOXF2!1.30!25.84!FOXF2;;chr15:83953397..83953425,-!p1@BNC1!1.30!21.76!BNC1;;chr6:10412392..10412409,-!p4@TFAP2A!1.29!21.31!TFAP2A;;chr21:38071430..38071456,+!p1@SIM2!1.29!18.59!SIM2;;chr12:54332608..54332636,+!p1@HOXC13!1.19!14.51!HOXC13;;chr17:46682321..46682362,-!p1@HOXB6!1.16!13.38!HOXB6;;chr2:172949484..172949522,+!p1@DLX1!1.15!13.15!DLX1;;chr11:61520075..61520136,+!p1@C11orf9!1.11!25.16!C11orf9;;chr18:19749541..19749557,+!p1@GATA6!1.10!36.50!GATA6;;chr10:8096772..8096787,+!p2@GATA3!1.10!13.60!GATA3;;chr5:50679228..50679288,+!p1@ISL1!1.08!11.11!ISL1;;chr7:35293685..35293718,-!p1@TBX20!1.08!11.11!TBX20;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.07!10.66!HOXC5;;chr8:72756667..72756736,-!p2@MSC!1.06!16.55!MSC;;chr8:72756063..72756125,-!p1@MSC!1.05!21.08!MSC;;chr5:134369905..134369972,-!p1@PITX1!1.04!15.42!PITX1;;chr12:80084167..80084197,-!p5@PAWR!1.03!23.35!PAWR;;chr8:60031619..60031676,-!p1@TOX!1.03!21.31!TOX;;chr11:46299199..46299233,+!p1@CREB3L1!1.02!49.88!CREB3L1;;chr19:45908292..45908374,-!p1@PPP1R13L!1.01!83.20!PPP1R13L;;chr2:172967621..172967637,-!p1@DLX2!1.01!24.94!DLX2;;chr12:26277817..26277863,-!p2@BHLHE41!0.99!12.02!BHLHE41;;chr3:169381420..169381535,-!p1@MECOM!0.99!10.43!MECOM;;chr7:19157248..19157268,-!p1@TWIST1!0.98!24.48!TWIST1;;chr20:42295745..42295765,+!p1@MYBL2!0.97!141.24!MYBL2;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.97!86.37!GLIS2;;chr12:26277956..26277980,-!p1@BHLHE41!0.97!30.83!BHLHE41;;chr20:50721803..50721857,-!p2@ZFP64!0.97!13.38!ZFP64;;chr5:172662197..172662216,-!p1@NKX2-5!0.97!8.39!NKX2-5;;chr12:124873357..124873401,-!p1@NCOR2!0.96!96.35!NCOR2;;chr12:80084737..80084763,-!p3@PAWR!0.96!31.06!PAWR;;chr12:54393880..54393962,+!p1@HOXC9!0.96!8.16!HOXC9;;chr3:138665937..138665968,-!p1@FOXL2!0.93!7.48!FOXL2;;chr7:19157043..19157088,-!p2@TWIST1!0.92!19.04!TWIST1;;chr12:80085061..80085119,-!p6@PAWR!0.92!11.79!PAWR;;chrY:21906594..21906622,-!p1@KDM5D!0.92!7.25!KDM5D;;chr6:1312325..1312340,+!p1@FOXQ1!0.91!11.79!FOXQ1;;chr12:26277929..26277955,-!p3@BHLHE41!0.91!10.20!BHLHE41;;chr8:72756637..72756664,-!p3@MSC!0.91!8.16!MSC;;chr20:42295713..42295738,+!p2@MYBL2!0.90!42.85!MYBL2;;chr17:46687959..46688007,-!p2@HOXB7!0.90!9.75!HOXB7;;chr15:67418119..67418162,+!p5@SMAD3!0.90!7.71!SMAD3;;chr3:25470156..25470227,+!p2@RARB!0.90!7.03!RARB;;chr6:10412576..10412599,-!p5@TFAP2A!0.89!6.80!TFAP2A;;chr12:80084137..80084165,-!p10@PAWR!0.88!8.61!PAWR;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.88!6.57!SEBOX;;chr7:27153454..27153469,-!p2@HOXA3!0.88!6.57!HOXA3;;chr8:72756267..72756296,-!p4@MSC!0.87!9.75!MSC;;chr10:8096631..8096660,+!p1@GATA3!0.87!7.93!GATA3;;chr3:170076314..170076334,+!p2@SKIL!0.85!8.16!SKIL;;chr16:86544113..86544145,+!p1@FOXF1!0.84!7.48!FOXF1;;chr11:65667846..65667868,-!p1@FOSL1!0.83!163.91!FOSL1;;chr11:44331576..44331650,-!p1@ALX4!0.82!5.67!ALX4;;chr12:54394309..54394336,+!p2@HOXC9!0.82!5.67!HOXC9;;chr12:57853634..57853662,+!p2@GLI1!0.82!5.67!GLI1;;chr16:85932760..85932775,+!p1@IRF8!0.81!5.44!IRF8;;chr8:72756213..72756243,-!p5@MSC!0.79!6.80!MSC;;chr12:54402745..54402788,+!p1@HOXC8!0.79!5.21!HOXC8;;chr2:172967242..172967265,-!p2@DLX2!0.79!5.21!DLX2;;chr18:19749386..19749404,+!p2@GATA6!0.78!7.48!GATA6;;chr16:1429010..1429038,-!p5@UNKL!0.78!4.99!UNKL;;chr12:124873852..124873881,-!p3@NCOR2!0.77!32.42!NCOR2;;chr7:27835758..27835772,+!p3@TAX1BP1!0.77!6.80!TAX1BP1;;chr12:80084303..80084332,-!p1@PAWR!0.76!30.61!PAWR;;chr11:65667884..65667895,-!p2@FOSL1!0.76!20.18!FOSL1;;chr5:92918894..92918912,+!p2@NR2F1!0.76!16.78!NR2F1;;chr7:1577899..1577943,+!p3@MAFK!0.76!4.76!MAFK;;chr12:54332652..54332671,+!p2@HOXC13!0.76!4.76!HOXC13;;chr5:92918919..92918942,+!p1@NR2F1!0.75!22.44!NR2F1;;chr3:168864315..168864339,-!p2@MECOM!0.75!7.93!MECOM;;chr16:29818199..29818216,+!p11@MAZ!0.75!7.93!MAZ;;chr1:23885981..23886002,-!p1@ID3!0.74!884.83!ID3;;chr12:80084279..80084293,-!p8@PAWR!0.74!7.93!PAWR;;chr12:54332687..54332701,+!p3@HOXC13!0.74!4.53!HOXC13;;chr15:83953373..83953386,-!p2@BNC1!0.74!4.53!BNC1;;chr8:11561684..11561751,+!p1@GATA4!0.74!4.53!GATA4;;chr21:38071403..38071428,+!p2@SIM2!0.74!4.53!SIM2;;chr7:77428149..77428220,+!p1@PHTF2!0.73!49.20!PHTF2;;chr15:67418047..67418093,+!p4@SMAD3!0.73!5.67!SMAD3;;chr7:26191809..26191890,+!p1@NFE2L3!0.72!23.35!NFE2L3;;chr12:80083544..80083558,-!p13@PAWR!0.72!5.44!PAWR;;chr5:172662230..172662241,-!p3@NKX2-5!0.72!4.31!NKX2-5;;chr5:2751762..2751784,-!p1@IRX2!0.72!4.31!IRX2;;chr6:10415484..10415508,-!p3@TFAP2A!0.72!4.31!TFAP2A;;chr6:1389989..1390019,+!p2@FOXF2!0.72!4.31!FOXF2;;chr2:113994526..113994556,-!p3@PAX8!0.72!4.31!PAX8;;chr2:239756739..239756755,+!p2@TWIST2!0.71!7.48!TWIST2;;chr7:27788205..27788255,+!p2@TAX1BP1!0.71!6.80!TAX1BP1;;chr6:10412477..10412490,-!p10@TFAP2A!0.71!4.08!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!0.70!48.29!KLF5;;chr8:60031682..60031710,-!p2@TOX!0.69!6.80!TOX;;chr12:54447599..54447630,+!p3@HOXC4!0.69!4.99!HOXC4;;chr18:53068911..53068935,-!p4@TCF4!0.69!4.53!TCF4;;chr5:3595977..3595999,+!p1@IRX1!0.69!3.85!IRX1;;chr20:30193083..30193098,+!p1@ID1!0.68!356.38!ID1;;chr6:19837592..19837621,+!p1@ID4!0.68!26.30!ID4;;chr17:46622114..46622138,-!p4@HOXB2!0.68!6.12!HOXB2;;chr8:72756023..72756055,-!p6@MSC!0.67!4.76!MSC;;chr6:1389824..1389840,+!p3@FOXF2!0.67!3.63!FOXF2;;chr15:80843484..80843499,+!p5@ARNT2!0.67!3.63!ARNT2;;chr12:80084120..80084136,-!p15@PAWR!0.67!3.63!PAWR;;chrY:2803415..2803468,+!p1@ZFY!0.67!3.63!ZFY;;chr16:29818160..29818188,+!p6@MAZ!0.66!19.04!MAZ;;chr8:67525443..67525459,-!p2@MYBL1!0.66!5.67!MYBL1;;chr10:48355030..48355090,+!p1@ZNF488!0.66!4.76!ZNF488;;chr20:32274179..32274213,-!p1@E2F1!0.65!26.75!E2F1;;chr2:239756671..239756732,+!p1@TWIST2!0.65!12.70!TWIST2;;chr1:45805872..45805900,+!p2@TOE1!0.65!9.29!TOE1;;chr17:46622070..46622109,-!p1@HOXB2!0.65!8.61!HOXB2;;chr12:26278008..26278024,-!p4@BHLHE41!0.65!4.31!BHLHE41;;chr12:3068544..3068597,+!p1@TEAD4!0.64!23.80!TEAD4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.64!3.40!HOXC5;;chr5:3595934..3595957,+!p2@IRX1!0.64!3.40!IRX1;;chr4:299227..299272,-!p1@ZNF732!0.64!3.40!ZNF732;;chr12:2986275..2986363,-!p1@FOXM1!0.63!38.54!FOXM1;;chr6:126240380..126240430,+!p2@NCOA7!0.63!9.52!NCOA7;;chr12:57853565..57853579,+!p1@GLI1!0.62!3.40!GLI1;;chr1:197886461..197886558,+!p1@LHX9!0.62!3.17!LHX9;;chr7:101917407..101917443,+!p3@CUX1!0.62!3.17!CUX1;;chr8:72756380..72756427,-!p8@MSC!0.62!3.17!MSC;;chr12:3069037..3069119,+!p2@TEAD4!0.61!12.24!TEAD4;;chr1:200379104..200379128,-!p2@ZNF281!0.61!8.61!ZNF281;;chr3:25469724..25469773,+!p1@RARB!0.61!4.76!RARB;;chr17:46688334..46688385,-!p1@HOXB7!0.61!4.76!HOXB7;;chr7:27779729..27779819,+!p1@TAX1BP1!0.60!229.20!TAX1BP1;;chr17:41277372..41277418,-!p1@BRCA1!0.60!12.70!BRCA1;;chr15:37392094..37392116,-!p6@MEIS2!0.60!3.85!MEIS2;;chr6:1612300..1612324,+!p3@FOXC1!0.60!2.95!FOXC1;;chr2:176994408..176994492,+!p1@HOXD8!0.60!2.95!HOXD8;;chr12:54447637..54447659,+!p4@HOXC4!0.60!2.95!HOXC4;;chr14:37131058..37131139,+!p1@PAX9!0.60!2.95!PAX9;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.25!GLI2;;chr8:23540441..23540466,-!p1@NKX3-1!0.59!6.57!NKX3-1;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.58!16.10!GLIS2;;chr11:46299539..46299620,+!p2@CREB3L1!0.58!5.21!CREB3L1;;chr3:168865194..168865245,-!p3@MECOM!0.58!3.85!MECOM;;chr12:80084768..80084821,-!p2@PAWR!0.57!23.12!PAWR;;chr1:35656508..35656584,-!p2@SFPQ!0.57!10.20!SFPQ;;chr1:35657108..35657135,-!p5@SFPQ!0.57!5.89!SFPQ;;chr12:80085255..80085284,-!p9@PAWR!0.57!4.31!PAWR;;chr15:80696703..80696754,+!p1@ARNT2!0.57!3.85!ARNT2;;chr15:67418177..67418204,+!p9@SMAD3!0.57!2.72!SMAD3;;chr1:201979703..201979721,+!p2@ELF3!0.57!2.72!ELF3;;chr5:139492456..139492489,+!p7@PURA!0.57!2.72!PURA;;chr11:16627528..16627550,-!p7@SOX6!0.57!2.72!SOX6;;chr3:69915385..69915438,+!p3@MITF!0.57!2.72!MITF;;chr6:21593973..21593988,+!p1@SOX4!0.56!118.57!SOX4;;chr16:1429627..1429662,-!p2@UNKL!0.56!9.07!UNKL;;chr19:20188776..20188826,+!p1@ZNF90!0.56!8.39!ZNF90;;chrX:66763856..66763896,+!p1@AR!0.56!4.08!AR;;chr6:85473156..85473210,-!p2@TBX18!0.56!3.40!TBX18;;chr19:6110474..6110551,-!p1@RFX2!0.55!19.27!RFX2;;chr12:77459306..77459365,-!p1@E2F7!0.54!39.45!E2F7;;chr12:27485785..27485816,+!p1@ARNTL2!0.54!21.31!ARNTL2;;chr8:77593474..77593612,+!p1@ZFHX4!0.54!12.70!ZFHX4;;chr6:20402102..20402152,+!p1@E2F3!0.54!12.47!E2F3;;chr18:19749517..19749531,+!p3@GATA6!0.54!4.99!GATA6;;chr1:221052776..221052799,+!p1@HLX!0.54!4.99!HLX;;chr11:120107344..120107351,+!p1@POU2F3!0.54!3.17!POU2F3;;chr12:54394059..54394088,+!p3@HOXC9!0.54!2.49!HOXC9;;chr7:27142290..27142310,-!p1@HOXA2!0.54!2.49!HOXA2;;chr8:60031934..60031986,-!p6@TOX!0.54!2.49!TOX;;chr2:172950227..172950249,+!p2@DLX1!0.54!2.49!DLX1;;chr6:31126291..31126399,+!p1@TCF19!0.53!29.02!TCF19;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.53!13.60!TAL1;;chr3:12329397..12329433,+!p2@PPARG!0.53!6.35!PPARG;;chr9:99180617..99180658,-!p1@ZNF367!0.53!6.12!ZNF367;;chr2:200323414..200323455,-!p1@SATB2!0.53!5.89!SATB2;;chr11:8102846..8102892,+!p1@TUB!0.53!3.63!TUB;;chr10:8095593..8095625,+!p3@GATA3!0.53!2.95!GATA3;;chr3:114343768..114343822,-!p1@ZBTB20!0.52!12.70!ZBTB20;;chr7:27135591..27135658,-!p1@HOXA1!0.52!5.21!HOXA1;;chr6:45390077..45390105,+!p9@RUNX2!0.52!3.17!RUNX2;;chr1:164528410..164528428,+!p1@PBX1!0.51!21.54!PBX1;;chr21:27107465..27107557,+!p3@GABPA!0.51!10.20!GABPA;;chr12:53625966..53626012,-!p2@RARG!0.51!7.25!RARG;;chr5:158526917..158526932,-!p1@EBF1!0.51!6.80!EBF1;;chr11:12696002..12696022,+!p2@TEAD1!0.51!6.57!TEAD1;;chrX:66763815..66763854,+!p2@AR!0.51!3.17!AR;;chr3:157823517..157823562,-!p1@SHOX2!0.51!2.49!SHOX2;;chr2:172967323..172967336,-!p4@DLX2!0.51!2.27!DLX2;;chr3:138665969..138665993,-!p2@FOXL2!0.51!2.27!FOXL2;;chr4:103423079..103423112,+!p4@NFKB1!0.51!2.27!NFKB1;;chr1:201979743..201979762,+!p1@ELF3!0.51!2.27!ELF3;;chr11:166292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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
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-|library_id_phase_based=1:CNhs13067
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+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10851
 |name=mesothelioma cell line:Mero-41
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@@ Line 51: / Line 60: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10851-111F5;search_select_hide=table117:FF:10851-111F5
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FF:10851-111F5: Difference between revisions

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Latest revision as of 15:09, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0