FF:10766-110F1: Difference between revisions

Latest revision as of 15:03, 3 June 2020

Name:	chronic myelogenous leukemia (CML) cell line:MEG-A2
Species:	Human (Homo sapiens)
Library ID:	CNhs11865
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	20
cell type	myeloid progenitor cell
cell line	MEG-A2
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004724

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11865		CAGE		DRX007854		DRR008726

Accession ID Hg19

Library id		BAM		CTSS
CNhs11865		DRZ000151		DRZ001536

Accession ID Hg38

Library id		BAM		CTSS
CNhs11865		DRZ011501		DRZ012886

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.158
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.464
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0265
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.157
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0181
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0.667
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0125
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0668
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0.0344
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.463
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.267
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.393
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.0668
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0668
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.216
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11865

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0468
MA0003.1	MA0003.1	0.639
MA0004.1	MA0004.1	0.0265
MA0006.1	MA0006.1	0.347
MA0007.1	MA0007.1	0.374
MA0009.1	MA0009.1	0.119
MA0014.1	MA0014.1	0.377
MA0017.1	MA0017.1	0.021
MA0018.2	MA0018.2	6.34631e-4
MA0019.1	MA0019.1	0.252
MA0024.1	MA0024.1	4.09819e-5
MA0025.1	MA0025.1	0.162
MA0027.1	MA0027.1	0.309
MA0028.1	MA0028.1	3.64506e-8
MA0029.1	MA0029.1	0.00348
MA0030.1	MA0030.1	0.328
MA0031.1	MA0031.1	0.815
MA0035.2	MA0035.2	1.07742e-26
MA0038.1	MA0038.1	0.00478
MA0039.2	MA0039.2	0.807
MA0040.1	MA0040.1	0.0519
MA0041.1	MA0041.1	0.588
MA0042.1	MA0042.1	0.723
MA0043.1	MA0043.1	0.00863
MA0046.1	MA0046.1	0.378
MA0047.2	MA0047.2	0.24
MA0048.1	MA0048.1	0.296
MA0050.1	MA0050.1	0.688
MA0051.1	MA0051.1	0.433
MA0052.1	MA0052.1	7.41457e-6
MA0055.1	MA0055.1	0.0431
MA0057.1	MA0057.1	0.383
MA0058.1	MA0058.1	0.036
MA0059.1	MA0059.1	0.00136
MA0060.1	MA0060.1	0.111
MA0061.1	MA0061.1	0.893
MA0062.2	MA0062.2	1.2231e-12
MA0065.2	MA0065.2	0.0114
MA0066.1	MA0066.1	0.993
MA0067.1	MA0067.1	0.819
MA0068.1	MA0068.1	0.114
MA0069.1	MA0069.1	0.198
MA0070.1	MA0070.1	0.997
MA0071.1	MA0071.1	0.051
MA0072.1	MA0072.1	0.551
MA0073.1	MA0073.1	0.492
MA0074.1	MA0074.1	0.459
MA0076.1	MA0076.1	1.43931e-7
MA0077.1	MA0077.1	0.317
MA0078.1	MA0078.1	0.72
MA0079.2	MA0079.2	0.974
MA0080.2	MA0080.2	2.39504e-8
MA0081.1	MA0081.1	0.00858
MA0083.1	MA0083.1	0.00494
MA0084.1	MA0084.1	0.36
MA0087.1	MA0087.1	0.145
MA0088.1	MA0088.1	0.00209
MA0090.1	MA0090.1	0.00113
MA0091.1	MA0091.1	0.761
MA0092.1	MA0092.1	0.939
MA0093.1	MA0093.1	0.0371
MA0099.2	MA0099.2	4.30153e-7
MA0100.1	MA0100.1	1.24685e-4
MA0101.1	MA0101.1	0.358
MA0102.2	MA0102.2	0.152
MA0103.1	MA0103.1	0.551
MA0104.2	MA0104.2	1.4395e-4
MA0105.1	MA0105.1	0.153
MA0106.1	MA0106.1	0.924
MA0107.1	MA0107.1	0.0652
MA0108.2	MA0108.2	4.56464e-7
MA0111.1	MA0111.1	0.167
MA0112.2	MA0112.2	0.235
MA0113.1	MA0113.1	0.836
MA0114.1	MA0114.1	0.0374
MA0115.1	MA0115.1	0.12
MA0116.1	MA0116.1	0.00657
MA0117.1	MA0117.1	0.497
MA0119.1	MA0119.1	0.839
MA0122.1	MA0122.1	0.534
MA0124.1	MA0124.1	0.366
MA0125.1	MA0125.1	0.25
MA0131.1	MA0131.1	0.521
MA0135.1	MA0135.1	0.994
MA0136.1	MA0136.1	3.49565e-9
MA0137.2	MA0137.2	0.523
MA0138.2	MA0138.2	0.766
MA0139.1	MA0139.1	0.971
MA0140.1	MA0140.1	1.38422e-33
MA0141.1	MA0141.1	0.161
MA0142.1	MA0142.1	0.532
MA0143.1	MA0143.1	0.319
MA0144.1	MA0144.1	0.955
MA0145.1	MA0145.1	0.475
MA0146.1	MA0146.1	0.024
MA0147.1	MA0147.1	3.53317e-5
MA0148.1	MA0148.1	0.0616
MA0149.1	MA0149.1	0.0444
MA0150.1	MA0150.1	0.348
MA0152.1	MA0152.1	0.192
MA0153.1	MA0153.1	0.0443
MA0154.1	MA0154.1	0.363
MA0155.1	MA0155.1	0.933
MA0156.1	MA0156.1	1.69085e-8
MA0157.1	MA0157.1	0.93
MA0159.1	MA0159.1	0.512
MA0160.1	MA0160.1	0.0354
MA0162.1	MA0162.1	0.849
MA0163.1	MA0163.1	6.05192e-12
MA0164.1	MA0164.1	0.819
MA0258.1	MA0258.1	0.209
MA0259.1	MA0259.1	0.0682

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11865

Novel motif	Logo	P-value
1	1	0.0686
10	10	0.0158
100	100	0.66
101	101	0.668
102	102	0.374
103	103	0.184
104	104	0.673
105	105	0.575
106	106	0.976
107	107	0.828
108	108	0.581
109	109	0.0125
11	11	0.0487
110	110	0.396
111	111	0.0318
112	112	0.399
113	113	0.581
114	114	0.134
115	115	0.135
116	116	0.103
117	117	0.0442
118	118	0.132
119	119	0.355
12	12	0.774
120	120	0.59
121	121	0.7
122	122	0.937
123	123	0.00784
124	124	0.576
125	125	0.0738
126	126	0.544
127	127	0.0865
128	128	0.887
129	129	0.721
13	13	0.00524
130	130	0.565
131	131	0.38
132	132	0.659
133	133	0.0449
134	134	0.67
135	135	0.396
136	136	0.0588
137	137	0.939
138	138	0.951
139	139	0.6
14	14	0.741
140	140	0.505
141	141	0.293
142	142	0.434
143	143	0.142
144	144	0.692
145	145	0.731
146	146	0.801
147	147	0.0513
148	148	0.956
149	149	0.167
15	15	0.235
150	150	0.812
151	151	0.816
152	152	0.677
153	153	0.842
154	154	0.816
155	155	0.0715
156	156	0.819
157	157	0.442
158	158	0.601
159	159	0.0968
16	16	0.957
160	160	0.432
161	161	0.287
162	162	0.873
163	163	0.284
164	164	0.0938
165	165	0.438
166	166	0.163
167	167	0.456
168	168	0.861
169	169	0.548
17	17	0.97
18	18	0.203
19	19	0.923
2	2	0.515
20	20	0.222
21	21	0.343
22	22	0.656
23	23	0.017
24	24	0.37
25	25	0.322
26	26	0.0938
27	27	0.948
28	28	0.738
29	29	0.0185
3	3	0.174
30	30	0.00941
31	31	0.368
32	32	0.0143
33	33	0.408
34	34	0.758
35	35	0.663
36	36	0.0335
37	37	0.271
38	38	0.364
39	39	0.42
4	4	0.294
40	40	0.315
41	41	0.345
42	42	0.396
43	43	0.62
44	44	0.791
45	45	0.686
46	46	0.321
47	47	0.0539
48	48	0.13
49	49	0.263
5	5	0.919
50	50	0.662
51	51	0.532
52	52	0.764
53	53	0.267
54	54	0.549
55	55	0.198
56	56	0.868
57	57	0.207
58	58	0.159
59	59	0.639
6	6	0.409
60	60	0.558
61	61	0.151
62	62	0.309
63	63	0.614
64	64	0.234
65	65	0.807
66	66	0.0264
67	67	0.992
68	68	0.123
69	69	0.824
7	7	0.0494
70	70	0.984
71	71	0.168
72	72	0.433
73	73	0.398
74	74	0.322
75	75	0.0118
76	76	0.161
77	77	0.376
78	78	0.00288
79	79	0.00635
8	8	0.134
80	80	0.49
81	81	0.553
82	82	0.33
83	83	0.576
84	84	0.591
85	85	0.0353
86	86	0.913
87	87	0.0219
88	88	0.198
89	89	0.687
9	9	0.93
90	90	0.0905
91	91	0.753
92	92	0.62
93	93	0.834
94	94	0.7
95	95	0.00407
96	96	0.635
97	97	0.448
98	98	0.0465
99	99	0.469

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11865

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:8552 chronic myeloid leukemia
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100740 myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)
8552 (chronic myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007749
+|DRA_sample_Accession=CAGE@SAMD00004724
-|accession_numbers=CAGE;DRX007854;DRR008726;DRZ000151;DRZ001536
+|accession_numbers=CAGE;DRX007854;DRR008726;DRZ000151;DRZ001536;DRZ011501;DRZ012886
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!2.64!432.15!GATA2;;chrX:48644984..48645005,+!p1@GATA1!2.27!184.33!GATA1;;chr12:54694758..54694805,-!p1@NFE2!2.21!193.80!NFE2;;chr6:135502501..135502546,+!p1@MYB!2.21!191.64!MYB;;chr19:12998003..12998021,-!p1@KLF1!2.06!115.02!KLF1;;chr12:54694807..54694832,-!p3@NFE2!1.99!95.90!NFE2;;chr9:135854091..135854159,+!p1@GFI1B!1.94!86.76!GFI1B;;chr3:128206762..128206781,-!p2@GATA2!1.81!378.63!GATA2;;chr19:13213511..13213545,-!p2@LYL1!1.78!63.49!LYL1;;chr6:135502408..135502459,+!p2@MYB!1.70!56.35!MYB;;chr5:134369905..134369972,-!p1@PITX1!1.55!52.52!PITX1;;chr21:39870339..39870443,-!p1@ERG!1.55!34.41!ERG;;chr6:135502472..135502489,+!p3@MYB!1.54!33.74!MYB;;chr12:54785074..54785122,-!p2@ZNF385A!1.53!50.36!ZNF385A;;chr5:134369879..134369898,-!p2@PITX1!1.50!30.42!PITX1;;chr10:94449703..94449718,+!p1@HHEX!1.46!104.38!HHEX;;chr11:47400045..47400060,-!p6@SPI1!1.42!25.43!SPI1;;chr9:20382446..20382493,-!p4@MLLT3!1.41!24.43!MLLT3;;chr7:50344289..50344323,+!p1@IKZF1!1.39!23.27!IKZF1;;chr12:54785054..54785072,-!p4@ZNF385A!1.38!26.26!ZNF385A;;chr11:47400078..47400106,-!p1@SPI1!1.38!23.10!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.38!22.94!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.36!21.94!SPI1;;chr7:137620650..137620677,-!p3@CREB3L2!1.33!20.28!CREB3L2;;chr19:13213399..13213414,-!p6@LYL1!1.30!18.95!LYL1;;chr20:50159198..50159299,-!p1@NFATC2!1.29!27.09!NFATC2;;chr1:47695003..47695042,-!p2@TAL1!1.27!17.62!TAL1;;chr17:40441354..40441410,+!p2@STAT5A!1.27!17.62!STAT5A;;chr11:47400032..47400043,-!p5@SPI1!1.26!17.29!SPI1;;chr8:37963466..37963506,+!p3@ASH2L!1.25!21.11!ASH2L;;chr12:54689532..54689551,-!p4@NFE2!1.25!16.79!NFE2;;chr1:47691303..47691319,-!p5@TAL1!1.24!16.45!TAL1;;chr7:137620684..137620711,-!p4@CREB3L2!1.24!16.29!CREB3L2;;chr2:68592406..68592424,+!p1@PLEK!1.23!15.79!PLEK;;chrY:21906594..21906622,-!p1@KDM5D!1.22!15.62!KDM5D;;chr12:54694653..54694672,-!p2@NFE2!1.22!15.62!NFE2;;chr19:13213555..13213568,-!p5@LYL1!1.21!15.29!LYL1;;chr1:47697881..47697910,-!p4@TAL1!1.21!15.13!TAL1;;chr19:33793430..33793447,-!p1@CEBPA!1.17!57.34!CEBPA;;chr4:109089095..109089144,-!p6@LEF1!1.13!12.63!LEF1;;chr21:36421535..36421610,-!p2@RUNX1!1.12!43.22!RUNX1;;chr10:94449675..94449694,+!p2@HHEX!1.12!32.74!HHEX;;chrX:48644976..48644983,+!p2@GATA1!1.12!12.13!GATA1;;chr7:50344251..50344288,+!p3@IKZF1!1.11!11.97!IKZF1;;chr4:109088940..109089037,-!p4@LEF1!1.10!11.47!LEF1;;chr2:145277640..145277771,-!p1@ZEB2!1.08!147.76!ZEB2;;chr7:63505799..63505904,+!p1@ZNF727!1.08!11.14!ZNF727;;chr19:22817119..22817145,+!p1@ZNF492!1.07!17.95!ZNF492;;chr6:144385698..144385742,-!p2@PLAGL1!1.07!12.96!PLAGL1;;chr7:115670804..115670825,-!p1@TFEC!1.05!10.14!TFEC;;chr19:13213465..13213478,-!p7@LYL1!1.04!9.97!LYL1;;chr8:60031619..60031676,-!p1@TOX!1.03!21.28!TOX;;chr17:38020392..38020477,-!p1@IKZF3!1.03!9.64!IKZF3;;chr7:50343634..50343717,+!p2@IKZF1!1.02!9.47!IKZF1;;chr17:40440481..40440550,+!p1@STAT5A!1.01!68.31!STAT5A;;chr18:22932080..22932170,-!p1@ZNF521!1.00!39.39!ZNF521;;chrX:48645010..48645015,+!p3@GATA1!0.99!8.81!GATA1;;chr5:88178983..88179012,-!p1@MEF2C!0.97!65.82!MEF2C;;chr8:28748099..28748141,+!p2@HMBOX1!0.97!26.43!HMBOX1;;chr1:47697539..47697573,-!p3@TAL1!0.95!7.98!TAL1;;chr2:214013461..214013517,-!p6@IKZF2!0.95!7.81!IKZF2;;chr13:41593425..41593480,-!p1@ELF1!0.94!50.53!ELF1;;chr12:54691711..54691725,-!p7@NFE2!0.90!6.98!NFE2;;chr1:61548069..61548102,+!p3@NFIA!0.89!16.95!NFIA;;chr6:135513595..135513617,+!p4@MYB!0.89!6.81!MYB;;chr12:54689552..54689574,-!p6@NFE2!0.88!6.65!NFE2;;chr9:135854074..135854089,+!p2@GFI1B!0.88!6.65!GFI1B;;chr20:61051039..61051057,-!p1@GATA5!0.88!6.65!GATA5;;chr3:141747459..141747475,-!p1@TFDP2!0.87!56.01!TFDP2;;chr1:92951607..92951661,-!p1@GFI1!0.87!6.48!GFI1;;chr12:54694738..54694749,-!p5@NFE2!0.86!6.32!NFE2;;chr4:87857474..87857489,+!p7@AFF1!0.85!10.97!AFF1;;chr11:32457103..32457123,-!p3@WT1!0.85!6.15!WT1;;chr8:145669791..145669834,-!p1@TONSL!0.84!17.78!TONSL;;chr3:157823517..157823562,-!p1@SHOX2!0.83!6.15!SHOX2;;chr1:61548225..61548299,+!p1@NFIA!0.82!78.78!NFIA;;chr4:4291837..4291859,-!p2@LYAR!0.82!19.28!LYAR;;chr3:63953435..63953499,+!p1@ATXN7!0.82!5.65!ATXN7;;chr5:88179017..88179046,-!p2@MEF2C!0.81!23.60!MEF2C;;chr19:11959532..11959593,+!p1@ZNF439!0.81!22.60!ZNF439;;chr8:28748157..28748175,+!p3@HMBOX1!0.81!6.81!HMBOX1;;chr19:57183114..57183145,-!p1@ZNF835!0.81!6.15!ZNF835;;chr7:35293685..35293718,-!p1@TBX20!0.81!5.48!TBX20;;chr8:128748308..128748324,+!p2@MYC!0.80!158.57!MYC;;chr6:7107999..7108031,+!p2@RREB1!0.80!30.42!RREB1;;chr6:15246200..15246214,+!p2@JARID2!0.79!15.13!JARID2;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.78!11.63!SOHLH2;;chr14:75988771..75988826,+!p1@BATF!0.78!6.81!BATF;;chr11:47399920..47399931,-!p7@SPI1!0.78!4.99!SPI1;;chr6:144329384..144329405,-!p1@PLAGL1!0.76!60.67!PLAGL1;;chr11:130184311..130184362,-!p4@ZBTB44!0.76!8.98!ZBTB44;;chr15:96875657..96875760,+!p14@NR2F2!0.76!8.31!NR2F2;;chr12:54778471..54778528,-!p1@ZNF385A!0.76!4.82!ZNF385A;;chr4:87928413..87928433,+!p3@AFF1!0.75!31.75!AFF1;;chrX:131623044..131623089,-!p1@MBNL3!0.75!21.11!MBNL3;;chr15:67391010..67391046,+!p13@SMAD3!0.75!4.65!SMAD3;;chr4:109089290..109089320,-!p14@LEF1!0.75!4.65!LEF1;;chr11:62369108..62369183,-!p3@MTA2!0.73!62.99!MTA2;;chr16:68119324..68119364,+!p1@NFATC3!0.73!21.61!NFATC3;;chr4:87857433..87857472,+!p9@AFF1!0.73!8.31!AFF1;;chr4:87857491..87857519,+!p10@AFF1!0.73!6.32!AFF1;;chr12:54691726..54691738,-!p9@NFE2!0.73!4.32!NFE2;;chr19:11998584..11998649,+!p1@ZNF69!0.72!20.94!ZNF69;;chr6:20402102..20402152,+!p1@E2F3!0.72!19.11!E2F3;;chr19:12203100..12203132,+!p1@ZNF788!0.72!9.31!ZNF788;;chr6:126240463..126240489,+!p6@NCOA7!0.72!4.82!NCOA7;;chr16:88519669..88519726,+!p1@ZFPM1!0.71!42.38!ZFPM1;;chr3:128207349..128207386,-!p3@GATA2!0.71!4.16!GATA2;;chr3:141747950..141748004,-!p7@TFDP2!0.71!4.16!TFDP2;;chr19:45579725..45579743,-!p1@ZNF296!0.70!20.11!ZNF296;;chr8:65493017..65493035,+!p4@BHLHE22!0.70!3.99!BHLHE22;;chr19:13213662..13213686,-!p1@LYL1!0.69!6.15!LYL1;;chr19:21950332..21950356,-!p2@ZNF100!0.68!8.81!ZNF100;;chr8:60031809..60031835,-!p4@TOX!0.68!4.99!TOX;;chr2:60781201..60781258,-!p3@BCL11A!0.68!3.82!BCL11A;;chr17:40440446..40440464,+!p5@STAT5A!0.68!3.82!STAT5A;;chr11:32457075..32457095,-!p1@WT1!0.68!3.82!WT1;;chr21:30671690..30671762,+!p2@BACH1!0.67!14.13!BACH1;;chr11:130184470..130184533,-!p2@ZBTB44!0.67!11.14!ZBTB44;;chr6:15401104..15401166,+!p5@JARID2!0.67!3.66!JARID2;;chrY:2803415..2803468,+!p1@ZFY!0.67!3.66!ZFY;;chr4:109088130..109088163,-!p13@LEF1!0.67!3.66!LEF1;;chr8:128748470..128748487,+!p1@MYC!0.66!460.74!MYC;;chr6:134274354..134274371,+!p1@TBPL1!0.66!111.03!TBPL1;;chr20:42295713..42295738,+!p2@MYBL2!0.66!24.27!MYBL2;;chr16:68119440..68119480,+!p4@NFATC3!0.66!6.32!NFATC3;;chr17:40428359..40428462,-!p1@STAT5B!0.65!51.53!STAT5B;;chr3:69788576..69788648,+!p1@MITF!0.65!21.44!MITF;;chr19:20011744..20011770,+!p1@ZNF93!0.65!15.29!ZNF93;;chr6:144329500..144329526,-!p4@PLAGL1!0.65!8.98!PLAGL1;;chr8:60031682..60031710,-!p2@TOX!0.65!5.98!TOX;;chr8:65492915..65492932,+!p1@BHLHE22!0.65!3.49!BHLHE22;;chr19:13213496..13213501,-!p10@LYL1!0.65!3.49!LYL1;;chr11:47400062..47400077,-!p2@SPI1!0.65!3.49!SPI1;;chr1:47696918..47696935,-!p6@TAL1!0.65!3.49!TAL1;;chr21:36260980..36261011,-!p1@RUNX1!0.64!114.35!RUNX1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.64!17.62!TAL1;;chr15:41913690..41913753,+!p2@MGA!0.64!8.98!MGA;;chr2:185463247..185463263,+!p1@ZNF804A!0.64!6.48!ZNF804A;;chr8:60031762..60031803,-!p3@TOX!0.64!5.15!TOX;;chr17:46622205..46622218,-!p3@HOXB2!0.64!3.99!HOXB2;;chr2:43453734..43453751,-!p1@ZFP36L2!0.63!413.87!ZFP36L2;;chr1:202777535..202777556,-!p1@KDM5B!0.63!129.48!KDM5B;;chr19:23433144..23433204,-!p1@ZNF724P!0.63!17.12!ZNF724P;;chr7:128577972..128578047,+!p1@IRF5!0.63!5.48!IRF5;;chr16:88519743..88519754,+!p2@ZFPM1!0.63!3.66!ZFPM1;;chr21:40177892..40177903,+!p2@ETS2!0.62!14.79!ETS2;;chr4:109089901..109089930,-!p3@LEF1!0.62!3.16!LEF1;;chr5:88180342..88180365,-!p10@MEF2C!0.62!3.16!MEF2C;;chr11:128563948..128564003,+!p1@FLI1!0.61!44.05!FLI1;;chr12:57504975..57505019,-!p2@STAT6!0.61!14.79!STAT6;;chr19:52956798..52956843,+!p1@ZNF578!0.61!6.81!ZNF578;;chr20:62462566..62462631,-!p1@ZBTB46!0.61!6.48!ZBTB46;;chr3:44626446..44626477,+!p1@ZNF660!0.61!6.15!ZNF660;;chr11:65686952..65686975,+!p5@DRAP1!0.60!19.78!DRAP1;;chr2:60780753..60780800,-!p1@BCL11A!0.60!17.45!BCL11A;;chr21:36262032..36262062,-!p5@RUNX1!0.60!8.98!RUNX1;;chr2:192015701..192015743,-!p1@STAT4!0.60!4.32!STAT4;;chr11:19262486..19262512,-!p4@E2F8!0.60!3.82!E2F8;;chr2:68592394..68592405,+!p2@PLEK!0.60!2.99!PLEK;;chr20:42295745..42295765,+!p1@MYBL2!0.59!58.17!MYBL2;;chr12:11802547..11802560,+!p5@ETV6!0.59!4.32!ETV6;;chr6:85473156..85473210,-!p2@TBX18!0.59!3.66!TBX18;;chr19:45579762..45579772,-!p2@ZNF296!0.59!3.32!ZNF296;;chr6:157099198..157099221,+!p3@ARID1B!0.58!10.80!ARID1B;;chr7:27135591..27135658,-!p1@HOXA1!0.58!5.98!HOXA1;;chr6:144329531..144329546,-!p5@PLAGL1!0.58!4.82!PLAGL1;;chrX:84499081..84499115,+!p2@ZNF711!0.58!4.49!ZNF711;;chr11:19263160..19263176,-!p1@E2F8!0.58!3.49!E2F8;;chr12:54778351..54778378,-!p6@ZNF385A!0.58!2.83!ZNF385A;;chr2:185463521..185463557,+!p3@ZNF804A!0.58!2.83!ZNF804A;;chr2:214014959..214015006,-!p4@IKZF2!0.58!2.83!IKZF2;;chr2:242556900..242556916,-!p6@THAP4!0.58!2.83!THAP4;;chr9:135854058..135854072,+!p3@GFI1B!0.58!2.83!GFI1B;;chr6:15246261..15246312,+!p1@JARID2!0.57!82.77!JARID2;;chr2:239148671..239148686,-!p1@HES6!0.57!11.97!HES6;;chr6:144289132..144289134,-!p3@PLAGL1!0.57!7.31!PLAGL1;;chr10:94449649..94449664,+!p3@HHEX!0.57!4.32!HHEX;;chr1:27022164..27022220,+!p2@ARID1A!0.56!23.93!ARID1A;;chr19:47538560..47538591,+!p2@NPAS1!0.56!2.66!NPAS1;;chr11:19262421..19262455,-!p3@E2F8!0.56!2.66!E2F8;;chr8:37963511..37963523,+!p4@ASH2L!0.56!2.66!ASH2L;;chrY:21906761..21906810,-!p2@KDM5D!0.56!2.66!KDM5D;;chr1:226595741..226595818,-!p1@PARP1!0.55!166.21!PARP1;;chr11:65687362..65687436,+!p3@DRAP1!0.55!14.29!DRAP1;;chr15:37390850..37390909,-!p3@MEIS2!0.55!5.65!MEIS2;;chr6:126240442..12624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@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520%2528CML%2529%2520cell%2520line%253aMEG-A2.CNhs11865.10766-110F1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520%2528CML%2529%2520cell%2520line%253aMEG-A2.CNhs11865.10766-110F1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520%2528CML%2529%2520cell%2520line%253aMEG-A2.CNhs11865.10766-110F1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520%2528CML%2529%2520cell%2520line%253aMEG-A2.CNhs11865.10766-110F1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/chronic%2520myelogenous%2520leukemia%2520%2528CML%2529%2520cell%2520line%253aMEG-A2.CNhs11865.10766-110F1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10766-110F1
 |is_a=DOID:8552;;EFO:0002091;;FF:0000210;;FF:0100740
 |is_obsolete=
 |library_id=CNhs11865
-|library_id_phase_based=1:CNhs11865
+|library_id_phase_based=2:CNhs11865
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10766
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10766
 |name=chronic myelogenous leukemia (CML) cell line:MEG-A2
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11865,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10766-110F1;search_select_hide=table117:FF:10766-110F1
 }}

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FF:10766-110F1: Difference between revisions

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Latest revision as of 15:03, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0