FF:10400-106A4: Difference between revisions

Latest revision as of 13:59, 3 June 2020

Name:	acute myeloid leukemia (FAB M5) cell line:THP-1 (revived)
Species:	Human (Homo sapiens)
Library ID:	CNhs10723
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	1 year old child
sex	male
age	1
cell type	monoblast
cell line	THP-1
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005601

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10723		CAGE		DRX007814		DRR008686

Accession ID Hg19

Library id		BAM		CTSS
CNhs10723		DRZ000111		DRZ001496

Accession ID Hg38

Library id		BAM		CTSS
CNhs10723		DRZ011461		DRZ012846

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0787
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.675
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	1.031
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0651
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0879
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.204
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.264
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.3
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.466
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.00225
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.47
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.223
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.128
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.161
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.161
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10723

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0557
MA0003.1	MA0003.1	0.963
MA0004.1	MA0004.1	0.194
MA0006.1	MA0006.1	0.206
MA0007.1	MA0007.1	0.27
MA0009.1	MA0009.1	0.0733
MA0014.1	MA0014.1	0.263
MA0017.1	MA0017.1	6.4021e-4
MA0018.2	MA0018.2	0.0241
MA0019.1	MA0019.1	0.703
MA0024.1	MA0024.1	1.33281e-8
MA0025.1	MA0025.1	0.0498
MA0027.1	MA0027.1	0.693
MA0028.1	MA0028.1	7.81878e-9
MA0029.1	MA0029.1	0.991
MA0030.1	MA0030.1	0.023
MA0031.1	MA0031.1	0.0106
MA0035.2	MA0035.2	0.68
MA0038.1	MA0038.1	0.213
MA0039.2	MA0039.2	0.943
MA0040.1	MA0040.1	0.234
MA0041.1	MA0041.1	0.209
MA0042.1	MA0042.1	0.244
MA0043.1	MA0043.1	0.155
MA0046.1	MA0046.1	0.721
MA0047.2	MA0047.2	0.2
MA0048.1	MA0048.1	0.16
MA0050.1	MA0050.1	0.258
MA0051.1	MA0051.1	0.358
MA0052.1	MA0052.1	0.333
MA0055.1	MA0055.1	0.0203
MA0057.1	MA0057.1	0.773
MA0058.1	MA0058.1	0.104
MA0059.1	MA0059.1	0.00506
MA0060.1	MA0060.1	1.83804e-7
MA0061.1	MA0061.1	0.731
MA0062.2	MA0062.2	8.24032e-17
MA0065.2	MA0065.2	0.0141
MA0066.1	MA0066.1	0.409
MA0067.1	MA0067.1	0.461
MA0068.1	MA0068.1	0.991
MA0069.1	MA0069.1	0.182
MA0070.1	MA0070.1	0.962
MA0071.1	MA0071.1	0.0714
MA0072.1	MA0072.1	0.348
MA0073.1	MA0073.1	0.545
MA0074.1	MA0074.1	0.393
MA0076.1	MA0076.1	1.61421e-9
MA0077.1	MA0077.1	0.994
MA0078.1	MA0078.1	0.426
MA0079.2	MA0079.2	0.403
MA0080.2	MA0080.2	5.53024e-13
MA0081.1	MA0081.1	3.82984e-4
MA0083.1	MA0083.1	0.684
MA0084.1	MA0084.1	0.209
MA0087.1	MA0087.1	0.269
MA0088.1	MA0088.1	0.0121
MA0090.1	MA0090.1	2.56957e-4
MA0091.1	MA0091.1	0.584
MA0092.1	MA0092.1	0.661
MA0093.1	MA0093.1	0.155
MA0099.2	MA0099.2	0.00132
MA0100.1	MA0100.1	2.31297e-7
MA0101.1	MA0101.1	0.392
MA0102.2	MA0102.2	3.20903e-5
MA0103.1	MA0103.1	0.766
MA0104.2	MA0104.2	3.52088e-4
MA0105.1	MA0105.1	0.246
MA0106.1	MA0106.1	0.544
MA0107.1	MA0107.1	0.0316
MA0108.2	MA0108.2	4.64126e-7
MA0111.1	MA0111.1	0.209
MA0112.2	MA0112.2	0.197
MA0113.1	MA0113.1	0.937
MA0114.1	MA0114.1	0.00161
MA0115.1	MA0115.1	0.0838
MA0116.1	MA0116.1	4.58999e-4
MA0117.1	MA0117.1	0.795
MA0119.1	MA0119.1	0.594
MA0122.1	MA0122.1	0.472
MA0124.1	MA0124.1	0.332
MA0125.1	MA0125.1	1
MA0131.1	MA0131.1	0.0234
MA0135.1	MA0135.1	0.687
MA0136.1	MA0136.1	9.39201e-23
MA0137.2	MA0137.2	0.845
MA0138.2	MA0138.2	0.26
MA0139.1	MA0139.1	0.436
MA0140.1	MA0140.1	0.518
MA0141.1	MA0141.1	0.132
MA0142.1	MA0142.1	0.634
MA0143.1	MA0143.1	0.659
MA0144.1	MA0144.1	0.683
MA0145.1	MA0145.1	0.882
MA0146.1	MA0146.1	0.12
MA0147.1	MA0147.1	1.87612e-4
MA0148.1	MA0148.1	0.147
MA0149.1	MA0149.1	0.524
MA0150.1	MA0150.1	0.227
MA0152.1	MA0152.1	0.725
MA0153.1	MA0153.1	0.232
MA0154.1	MA0154.1	0.372
MA0155.1	MA0155.1	0.184
MA0156.1	MA0156.1	1.44198e-19
MA0157.1	MA0157.1	0.0273
MA0159.1	MA0159.1	0.954
MA0160.1	MA0160.1	0.173
MA0162.1	MA0162.1	0.499
MA0163.1	MA0163.1	1.29563e-9
MA0164.1	MA0164.1	0.837
MA0258.1	MA0258.1	0.0394
MA0259.1	MA0259.1	0.0469

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10723

Novel motif	Logo	P-value
1	1	0.0677
10	10	0.0245
100	100	0.281
101	101	0.399
102	102	0.633
103	103	0.182
104	104	0.533
105	105	0.817
106	106	0.0318
107	107	0.0735
108	108	0.211
109	109	0.0201
11	11	0.161
110	110	0.272
111	111	0.628
112	112	0.682
113	113	0.248
114	114	0.539
115	115	0.334
116	116	0.87
117	117	0.0653
118	118	0.116
119	119	0.782
12	12	0.724
120	120	0.469
121	121	0.763
122	122	0.0708
123	123	0.404
124	124	0.287
125	125	0.497
126	126	0.437
127	127	0.0458
128	128	0.0793
129	129	0.292
13	13	9.13312e-4
130	130	0.262
131	131	0.0167
132	132	0.867
133	133	0.438
134	134	0.496
135	135	0.227
136	136	0.124
137	137	0.353
138	138	0.965
139	139	0.669
14	14	0.812
140	140	0.0446
141	141	0.706
142	142	0.553
143	143	0.445
144	144	0.787
145	145	0.711
146	146	0.806
147	147	0.0927
148	148	0.05
149	149	0.0894
15	15	0.303
150	150	0.741
151	151	0.429
152	152	0.0417
153	153	0.764
154	154	0.547
155	155	0.204
156	156	0.823
157	157	0.64
158	158	0.512
159	159	0.43
16	16	0.828
160	160	0.848
161	161	0.0525
162	162	0.625
163	163	0.668
164	164	0.503
165	165	0.013
166	166	0.382
167	167	0.564
168	168	0.904
169	169	0.932
17	17	0.504
18	18	0.738
19	19	0.752
2	2	0.218
20	20	0.386
21	21	0.484
22	22	0.672
23	23	0.0104
24	24	0.0272
25	25	0.294
26	26	0.707
27	27	0.402
28	28	0.913
29	29	0.0233
3	3	0.0241
30	30	0.2
31	31	0.408
32	32	0.0807
33	33	0.502
34	34	0.718
35	35	0.651
36	36	0.0573
37	37	0.342
38	38	0.271
39	39	0.23
4	4	0.239
40	40	0.278
41	41	0.956
42	42	0.1
43	43	0.831
44	44	0.606
45	45	0.348
46	46	0.293
47	47	0.0603
48	48	0.0508
49	49	0.735
5	5	0.919
50	50	0.795
51	51	0.775
52	52	0.0907
53	53	0.656
54	54	0.609
55	55	0.717
56	56	0.609
57	57	0.307
58	58	0.204
59	59	0.562
6	6	0.491
60	60	0.454
61	61	0.199
62	62	0.409
63	63	0.984
64	64	0.311
65	65	0.577
66	66	0.00289
67	67	0.401
68	68	0.0883
69	69	0.623
7	7	0.0754
70	70	0.188
71	71	0.106
72	72	0.943
73	73	0.844
74	74	0.775
75	75	0.0524
76	76	0.184
77	77	0.65
78	78	0.0206
79	79	0.241
8	8	0.563
80	80	0.499
81	81	0.422
82	82	0.824
83	83	0.396
84	84	0.831
85	85	0.0324
86	86	0.67
87	87	0.0226
88	88	0.387
89	89	0.617
9	9	0.407
90	90	0.0502
91	91	0.0439
92	92	0.101
93	93	0.765
94	94	0.708
95	95	0.00312
96	96	0.764
97	97	0.614
98	98	0.685
99	99	0.33

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10723

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101370 THP-1 cell sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101370 (THP-1 cell sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0102332 (monocytic leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007709
+|DRA_sample_Accession=CAGE@SAMD00005601
-|accession_numbers=CAGE;DRX007814;DRR008686;DRZ000111;DRZ001496
+|accession_numbers=CAGE;DRX007814;DRR008686;DRZ000111;DRZ001496;DRZ011461;DRZ012846
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.52!332.83!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.29!193.93!SPI1;;chr6:135502501..135502546,+!p1@MYB!2.06!136.44!MYB;;chr2:68592406..68592424,+!p1@PLEK!1.97!92.83!PLEK;;chr9:96717629..96717644,-!p1@BARX1!1.86!71.80!BARX1;;chr12:54778471..54778528,-!p1@ZNF385A!1.83!66.88!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!1.73!52.79!TFEC;;chr6:135502408..135502459,+!p2@MYB!1.69!54.80!MYB;;chr19:33793430..33793447,-!p1@CEBPA!1.63!167.09!CEBPA;;chr3:18486354..18486377,-!p2@SATB1!1.60!48.09!SATB1;;chr1:92951607..92951661,-!p1@GFI1!1.60!38.70!GFI1;;chr10:31288398..31288455,-!p2@ZNF438!1.59!44.06!ZNF438;;chr2:63277948..63277974,+!p1@OTX1!1.52!32.43!OTX1;;chr2:200322654..200322707,-!p2@SATB2!1.50!44.06!SATB2;;chr1:156460436..156460462,-!p7@MEF2D!1.50!30.64!MEF2D;;chr7:50344289..50344323,+!p1@IKZF1!1.50!30.42!IKZF1;;chr13:72441315..72441454,-!p1@DACH1!1.49!57.93!DACH1;;chr1:92949331..92949377,-!p2@GFI1!1.49!30.20!GFI1;;chr1:41157363..41157416,+!p1@NFYC!1.40!441.31!NFYC;;chr1:41157421..41157482,+!p2@NFYC!1.40!268.64!NFYC;;chr2:175199675..175199688,+!p1@SP9!1.40!24.16!SP9;;chr6:85473156..85473210,-!p2@TBX18!1.39!28.63!TBX18;;chr7:27205136..27205164,-!p1@HOXA9!1.38!22.81!HOXA9;;chr5:72744594..72744609,-!p1@FOXD1!1.35!95.06!FOXD1;;chr1:40942922..40942997,+!p1@ZNF642!1.35!55.02!ZNF642;;chr1:40997285..40997352,+!p1@ZNF684!1.34!71.58!ZNF684;;chr14:75988771..75988826,+!p1@BATF!1.34!27.96!BATF;;chr7:137620650..137620677,-!p3@CREB3L2!1.34!21.03!CREB3L2;;chr2:145277640..145277771,-!p1@ZEB2!1.33!262.60!ZEB2;;chr7:137620684..137620711,-!p4@CREB3L2!1.33!20.35!CREB3L2;;chr6:135516877..135516900,+!p5@MYB!1.30!19.01!MYB;;chr11:47400062..47400077,-!p2@SPI1!1.30!19.01!SPI1;;chr5:88178983..88179012,-!p1@MEF2C!1.28!134.88!MEF2C;;chr6:135502472..135502489,+!p3@MYB!1.28!18.12!MYB;;chr1:50889103..50889145,-!p1@DMRTA2!1.27!17.45!DMRTA2;;chr18:55102598..55102623,+!p1@ONECUT2!1.26!17.22!ONECUT2;;chr7:113726357..113726443,+!p1@FOXP2!1.25!28.41!FOXP2;;chr7:128577972..128578047,+!p1@IRF5!1.25!26.17!IRF5;;chr1:40997363..40997392,+!p2@ZNF684!1.25!21.70!ZNF684;;chr6:34204973..34204990,+!p4@HMGA1!1.24!212.94!HMGA1;;chr7:27224795..27224840,-!p2@HOXA11!1.22!15.66!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.22!15.66!HOXA11;;chr7:27205106..27205134,-!p2@HOXA9!1.22!15.43!HOXA9;;chr1:156470515..156470542,-!p2@MEF2D!1.20!77.62!MEF2D;;chr1:3569072..3569093,+!p1@TP73!1.20!14.99!TP73;;chr3:157824001..157824078,-!p2@SHOX2!1.20!14.99!SHOX2;;chr2:63277978..63277995,+!p2@OTX1!1.19!14.54!OTX1;;chr7:50343634..50343717,+!p2@IKZF1!1.19!14.32!IKZF1;;chr18:55102628..55102646,+!p2@ONECUT2!1.18!14.09!ONECUT2;;chr18:22932080..22932170,-!p1@ZNF521!1.17!58.60!ZNF521;;chr10:31288370..31288393,-!p3@ZNF438!1.17!13.87!ZNF438;;chr7:27213893..27213954,-!p1@HOXA10!1.17!13.87!HOXA10;;chr2:100759037..100759058,-!p2@AFF3!1.17!13.64!AFF3;;chr1:156460473..156460486,-!p12@MEF2D!1.16!13.42!MEF2D;;chr3:18480217..18480239,-!p3@SATB1!1.15!12.97!SATB1;;chr1:247171316..247171336,-!p3@ZNF695!1.14!19.24!ZNF695;;chr16:54319010..54319041,-!p8@IRX3!1.14!12.75!IRX3;;chr13:41593425..41593480,-!p1@ELF1!1.12!77.62!ELF1;;chr11:47399996..47400014,-!p4@SPI1!1.11!11.85!SPI1;;chr1:92952473..92952489,-!p3@GFI1!1.11!11.85!GFI1;;chr16:54320646..54320672,-!p2@IRX3!1.10!17.67!IRX3;;chr18:22805268..22805280,-!p8@ZNF521!1.10!11.63!ZNF521;;chr11:47399947..47399961,-!p3@SPI1!1.09!11.41!SPI1;;chr3:157824202..157824211,-!p3@SHOX2!1.09!11.18!SHOX2;;chr16:54320617..54320643,-!p3@IRX3!1.08!14.09!IRX3;;chr1:167298300..167298319,+!p2@POU2F1!1.07!10.74!POU2F1;;chr2:68592394..68592405,+!p2@PLEK!1.04!10.07!PLEK;;chr7:50344251..50344288,+!p3@IKZF1!1.04!10.07!IKZF1;;chr2:200322229..200322251,-!p3@SATB2!1.04!9.84!SATB2;;chr17:41277372..41277418,-!p1@BRCA1!1.03!36.24!BRCA1;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!1.03!35.56!ZNF670;;chr17:79881332..79881348,-!p3@MAFG!1.03!14.32!MAFG;;chr21:34442439..34442455,+!p1@OLIG1!1.02!9.39!OLIG1;;chr11:47400032..47400043,-!p5@SPI1!1.02!9.39!SPI1;;chr16:54320280..54320291,-!p9@IRX3!1.01!9.17!IRX3;;chr6:135516909..135516925,+!p6@MYB!1.01!9.17!MYB;;chr1:167298384..167298412,+!p3@POU2F1!1.01!9.17!POU2F1;;chr20:42295745..42295765,+!p1@MYBL2!1.00!148.97!MYBL2;;chr1:40627038..40627071,+!p1@RLF!1.00!121.46!RLF;;chr11:128563948..128564003,+!p1@FLI1!1.00!110.05!FLI1;;chr16:54320675..54320715,-!p1@IRX3!1.00!19.91!IRX3;;chr2:145277882..145277967,-!p3@ZEB2!1.00!15.88!ZEB2;;chr1:156470494..156470505,-!p3@MEF2D!1.00!13.20!MEF2D;;chr12:54694758..54694805,-!p1@NFE2!1.00!10.96!NFE2;;chrY:21906594..21906622,-!p1@KDM5D!1.00!8.95!KDM5D;;chr7:27239703..27239715,-!p1@HOXA13!0.98!8.50!HOXA13;;chr16:54320158..54320200,-!p5@IRX3!0.97!12.08!IRX3;;chr1:167298425..167298440,+!p8@POU2F1!0.97!8.28!POU2F1;;chrX:66763856..66763896,+!p1@AR!0.96!11.85!AR;;chr18:22804637..22804660,-!p10@ZNF521!0.96!8.05!ZNF521;;chr11:47400045..47400060,-!p6@SPI1!0.96!8.05!SPI1;;chr16:54320322..54320343,-!p7@IRX3!0.95!7.83!IRX3;;chr1:92949505..92949543,-!p5@GFI1!0.95!7.83!GFI1;;chr7:35293685..35293718,-!p1@TBX20!0.95!7.83!TBX20;;chr2:200320768..200320800,-!p4@SATB2!0.93!7.60!SATB2;;chr19:13213662..13213686,-!p1@LYL1!0.91!10.74!LYL1;;chr19:13213954..13214021,-!p4@LYL1!0.91!7.16!LYL1;;chr3:18467290..18467311,-!p8@SATB1!0.91!7.16!SATB1;;chr7:19157248..19157268,-!p1@TWIST1!0.88!19.24!TWIST1;;chr15:57511609..57511651,+!p2@TCF12!0.88!11.41!TCF12;;chr19:13213704..13213726,-!p3@LYL1!0.88!8.95!LYL1;;chr20:42295713..42295738,+!p2@MYBL2!0.87!39.59!MYBL2;;chr19:20011744..20011770,+!p1@ZNF93!0.87!26.17!ZNF93;;chr2:145275982..145276003,-!p7@ZEB2!0.87!6.49!ZEB2;;chr1:41157266..41157314,+!p3@NFYC!0.86!55.92!NFYC;;chr7:64838786..64838809,+!p2@ZNF92!0.85!37.13!ZNF92;;chr7:27239740..27239759,-!p2@HOXA13!0.85!6.04!HOXA13;;chr19:22605136..22605154,-!p1@ZNF98!0.85!6.04!ZNF98;;chr2:100759010..100759035,-!p1@AFF3!0.85!6.04!AFF3;;chr2:175199697..175199706,+!p2@SP9!0.85!6.04!SP9;;chr2:200325204..200325243,-!p7@SATB2!0.85!6.04!SATB2;;chr3:18480173..18480189,-!p6@SATB1!0.85!6.04!SATB1;;chr1:247171347..247171366,-!p2@ZNF695!0.83!10.96!ZNF695;;chr6:45390269..45390298,+!p5@RUNX2!0.83!9.84!RUNX2;;chr19:23299814..23299844,+!p1@ZNF730!0.83!7.16!ZNF730;;chr3:157823517..157823562,-!p1@SHOX2!0.83!6.26!SHOX2;;chr1:40105347..40105358,-!p2@HEYL!0.83!5.82!HEYL;;chrY:2803415..2803468,+!p1@ZFY!0.83!5.82!ZFY;;chr8:145669791..145669834,-!p1@TONSL!0.82!17.00!TONSL;;chr19:22817119..22817145,+!p1@ZNF492!0.82!9.62!ZNF492;;chr1:221052733..221052749,+!p2@HLX!0.80!7.16!HLX;;chr1:41157641..41157665,+!p7@NFYC!0.80!6.93!NFYC;;chr1:41204530..41204541,+!p8@NFYC!0.80!6.49!NFYC;;chr2:102091566..102091581,-!p1@RFX8!0.80!5.37!RFX8;;chr7:114054864..114054876,+!p11@FOXP2!0.80!5.37!FOXP2;;chrY:21906761..21906810,-!p2@KDM5D!0.80!5.37!KDM5D;;chr1:43148059..43148108,+!p1@YBX1!0.79!365.04!YBX1;;chr21:36421535..36421610,-!p2@RUNX1!0.79!19.68!RUNX1;;chr4:87857474..87857489,+!p7@AFF1!0.79!9.39!AFF1;;chr11:19263192..19263222,-!p2@E2F8!0.79!6.49!E2F8;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.79!5.14!ZNF469;;chr19:50922187..50922204,+!p1@SPIB!0.79!5.14!SPIB;;chr7:113726226..113726245,+!p3@FOXP2!0.79!5.14!FOXP2;;chr19:21950332..21950356,-!p2@ZNF100!0.78!11.41!ZNF100;;chr1:40367530..40367597,-!p1@MYCL1!0.78!9.62!MYCL1;;chr3:71630980..71631110,-!p3@FOXP1!0.77!18.34!FOXP1;;chr19:20011731..20011743,+!p3@ZNF93!0.77!6.49!ZNF93;;chr11:19262421..19262455,-!p3@E2F8!0.77!4.92!E2F8;;chr11:44331576..44331650,-!p1@ALX4!0.77!4.92!ALX4;;chr7:114054885..114054910,+!p4@FOXP2!0.77!4.92!FOXP2;;chr2:60780607..60780624,-!p2@BCL11A!0.76!15.88!BCL11A;;chr6:45390300..45390335,+!p4@RUNX2!0.76!7.83!RUNX2;;chr16:54320101..54320125,-!p4@IRX3!0.76!6.93!IRX3;;chr2:208031943..208031978,-!p5@KLF7!0.76!6.49!KLF7;;chr9:1050331..1050363,+!p1@DMRT2!0.76!4.70!DMRT2;;chr19:22605097..22605121,-!p2@ZNF98!0.76!4.70!ZNF98;;chr10:31146697..31146708,-!p11@ZNF438!0.76!4.70!ZNF438;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.75!23.26!TAL1;;chr5:88179017..88179046,-!p2@MEF2C!0.75!20.13!MEF2C;;chr19:20011775..20011800,+!p2@ZNF93!0.75!8.72!ZNF93;;chr1:41157671..41157695,+!p6@NFYC!0.75!6.71!NFYC;;chr19:12163769..12163798,-!p1@ZNF878!0.74!6.04!ZNF878;;chr11:19262461..19262476,-!p5@E2F8!0.74!4.47!E2F8;;chr13:72441074..72441172,-!p2@DACH1!0.74!4.47!DACH1;;chr2:145275947..145275981,-!p10@ZEB2!0.74!4.47!ZEB2;;chr20:21378152..21378169,-!p1@NKX2-4!0.74!4.47!NKX2-4;;chr1:40915725..40915808,+!p1@ZNF643!0.72!13.64!ZNF643;;chr1:156460402..156460417,-!p22@MEF2D!0.72!4.25!MEF2D;;chr13:100623375..100623425,-!p1@ZIC5!0.72!4.25!ZIC5;;chr17:79881318..79881331,-!p7@MAFG!0.72!4.25!MAFG;;chr19:3574330..3574393,+!p2@HMG20B!0.72!4.25!HMG20B;;chr9:126774018..126774055,+!p1@LHX2!0.72!4.25!LHX2;;chr19:23433144..23433204,-!p1@ZNF724P!0.70!20.35!ZNF724P;;chr1:221053049..221053075,+!p3@HLX!0.70!7.38!HLX;;chr10:22292591..22292606,-!p2@DNAJC1!0.70!6.93!DNAJC1;;chr16:54964740..54964789,+!p1@IRX5!0.70!6.04!IRX5;;chr4:87857491..87857519,+!p10@AFF1!0.70!5.82!AFF1;;chr19:48774586..48774670,+!p1@ZNF114!0.70!5.14!ZNF114;;chr1:40105299..40105326,-!p1@HEYL!0.70!4.03!HEYL;;chr16:54320302..54320317,-!p10@IRX3!0.70!4.03!IRX3;;chr18:22932004..22932021,-!p2@ZNF521!0.70!4.03!ZNF521;;chr19:2867325..2867348,+!p1@ZNF556!0.70!4.03!ZNF556;;chr7:64363638..64363667,+!p1@ZNF273!0.69!22.14!ZNF273;;chrX:66763815..66763854,+!p2@AR!0.69!5.37!AR;;chr6:45390002..45390023,+!p6@RUNX2!0.68!6.93!RUNX2;;chr6:144385698..144385742,-!p2@PLAGL1!0.68!4.70!PLAGL1;;chr5:71803177..71803255,-!p1@ZNF366!0.68!3.80!ZNF366;;chr5:88120151..88120177,-!p6@MEF2C!0.68!3.80!MEF2C;;chr6:135513595..135513617,+!p4@MYB!0.68!3.80!MYB;;chr10:31288329..31288353,-!p7@ZNF438!0.68!3.80!ZNF438;;chr13:72440901..72440968,-!p4@DACH1!0.68!3.80!DACH1;;chr21:34442540..34442560,+!p2@OLIG1!0.68!3.80!OLIG1;;chr1:167298449..167298461,+!p9@POU2F1!0.66!3.58!POU2F1;;chr1:3569101..3569115,+!p2@TP73!0.66!3.58!TP73;;chr2:145277589..145277612,-!p12@ZEB2!0.66!3.58!ZEB2;;chr3:18462463..18462475,-!p45@SATB1!0.66!3.58!SATB1;;chr10:135044190..135044229,+!p3@UTF1!0.66!3.58!UTF1;;chr14:55493763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ID1A!0.21!10.29!ARID1A;;chr12:133532864..133532899,-!p1@ZNF605!0.21!10.07!ZNF605;;chr14:89883509..89883587,-!p2@FOXN3!0.21!9.39!FOXN3;;chr3:40518599..40518664,+!p1@ZNF619!0.21!7.83!ZNF619;;chr6:43139041..43139094,+!p3@SRF!0.21!7.60!SRF;;chrX:47342565..47342638,-!p1@ZNF41!0.21!7.60!ZNF41;;chr2:178128199..178128245,-!p3@NFE2L2!0.21!7.16!NFE2L2;;chr6:34205372..34205412,+!p5@HMGA1!0.21!6.71!HMGA1;;chr16:31085514..31085576,-!p1@ZNF668!0.21!5.37!ZNF668;;chr19:53238260..53238312,-!p1@ZNF611!0.21!4.47!ZNF611;;chr19:23870007..23870022,-!p2@ZNF675!0.21!4.03!ZNF675;;chr10:44101850..44101896,+!p1@ZNF485!0.21!3.80!ZNF485;;chr15:66994663..66994680,+!p1@SMAD6!0.21!2.68!SMAD6;;chr19:47615426..47615439,-!p5@ZC3H4!0.21!2.68!ZC3H4;;chr19:52430697..52430749,+!p1@ZNF613!0.21!2.68!ZNF613;;chr19:53970970..53971021,+!p1@ZNF813!0.21!2.68!ZNF813;;chr4:76439649..76439662,+!p2@THAP6!0.21!2.68!THAP6;;chr2:75937794..75937867,-!p2@GCFC2!0.21!2.46!GCFC2;;chr6:7108855..7108903,+!p5@RREB1!0.21!2.46!RREB1;;chr7:99070527..99070542,+!p2@ZNF789!0.21!2.46!ZNF789;;chr16:3313791..3313834,+!p2@ZNF263!0.21!2.46!ZNF263;;chr19:21324863..21324874,+!p2@ZNF431!0.21!1.79!ZNF431;;chr12:53574398..53574412,+!p3@ZNF740!0.21!1.79!ZNF740;;chr5:142783792..142783842,-!p5@NR3C1!0.21!1.79!NR3C1;;chr4:87968203..87968221,+!p11@AFF1!0.21!1.57!AFF1;;chr10:21823381..21823399,+!p4@MLLT10!0.21!1.57!MLLT10;;chr10:94449649..94449664,+!p3@HHEX!0.21!1.34!HHEX;;chr1:67396022..67396041,+!p6@MIER1!0.21!1.34!MIER1;;chr20:33413523..33413534,-!p3@NCOA6!0.21!1.12!NCOA6;;chr17:42295897..42295953,-!p10@UBTF!0.21!1.12!UBTF;;chr18:53255839..53255854,-!p13@TCF4!0.21!0.89!TCF4;;chr7:100076873..100076880,-!p6@TSC22D4!0.21!0.89!TSC22D4;;chr8:81397876..81397898,+!p5@ZBTB10!0.21!0.89!ZBTB10;;chr1:149858461..149858479,+!p1@BOLA1!0.20!567.69!BOLA1;;chr2:37458692..37458745,-!p1@CEBPZ!0.20!54.13!CEBPZ;;chr16:67596417..67596497,+!p1@CTCF!0.20!48.99!CTCF;;chr17:40719102..40719141,+!p1@MLX!0.20!45.41!MLX;;chr18:32924372..32924430,-!p1@ZNF24!0.20!43.39!ZNF24;;chr19:11071685..11071798,+!p1@SMARCA4!0.20!40.04!SMARCA4;;chr16:67226019..67226127,+!p1@E2F4!0.20!18.12!E2F4;;chr5:138629389..138629416,+!p4@MATR3!0.20!17.22!MATR3;;chr1:151431909..151431987,-!p1@POGZ!0.20!16.55!POGZ;;chr22:41601296..41601355,+!p1@L3MBTL2!0.20!15.88!L3MBTL2;;chr16:29817617..29817664,+!p4@MAZ!0.20!14.54!MAZ;;chr11:118992269..118992334,+!p1@HINFP!0.20!11.63!HINFP;;chr2:113033164..113033219,+!p1@ZC3H6!0.20!11.41!ZC3H6;;chr19:52490043..52490113,-!p1@ZNF350!0.20!10.51!ZNF350;;chr2:174828892..174828972,-!p2@SP3!0.20!9.84!SP3;;chr6:35227480..35227546,+!p1@ZNF76!0.20!8.72!ZNF76;;chr15:50647370..50647405,-!p2@GABPB1!0.20!7.16!GABPB1;;chr1:149871114..149871134,+!p3@BOLA1!0.20!4.92!BOLA1;;chr1:151043216..151043256,+!p1@GABPB2!0.20!4.25!GABPB2;;chr1:67396044..67396071,+!p3@MIER1!0.20!4.25!MIER1;;chr6:157098579..157098634,+!p4@ARID1B!0.20!2.46!ARID1B;;chr19:36980455..36980469,-!p2@ZNF566!0.20!2.24!ZNF566;;chr12:53774035..53774058,+!p4@SP1!0.20!2.01!SP1;;chr15:57025812..57025819,-!p4@ZNF280D!0.20!1.34!ZNF280D;;chr16:30569604..30569629,-!p3@ZNF764!0.20!1.34!ZNF764;;chr1:158985493..158985535,+!p4@IFI16!0.20!1.34!IFI16;;chr4:87928105..87928126,+!p13@AFF1!0.20!1.34!AFF1;;chr11:6947647..6947698,+!p2@ZNF215!0.20!1.12!ZNF215;;chrX:84498989..84499003,+!p1@ZNF711!0.20!1.12!ZNF711;;chr1:158979680..158979683,+!p9@IFI16!0.20!1.12!IFI16;;chr16:30546275..30546297,-!p2@ZNF747!0.20!1.12!ZNF747;;chr15:37392593..37392607,-!p13@MEIS2!0.20!0.89!MEIS2;;chr19:36980474..36980485,-!p4@ZNF566!0.20!0.89!ZNF566;;chr10:22292509..22292523,-!p4@DNAJC1!0.20!0.89!DNAJC1;;
@@ Line 41: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528revived%2529.CNhs10723.10400-106A4.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528revived%2529.CNhs10723.10400-106A4.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528revived%2529.CNhs10723.10400-106A4.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528revived%2529.CNhs10723.10400-106A4.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528revived%2529.CNhs10723.10400-106A4.hg38.nobarcode.ctss.bed.gz
 |id=FF:10400-106A4
 |is_a=EFO:0002091;;FF:0000210;;FF:0101370;;FF:0101883
 |is_obsolete=
 |library_id=CNhs10723
-|library_id_phase_based=1:CNhs10723
+|library_id_phase_based=2:CNhs10723
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10400
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10400
 |name=acute myeloid leukemia (FAB M5) cell line:THP-1 (revived)
 |namespace=FANTOM5
@@ Line 51: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10723,LSID691,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10400-106A4;search_select_hide=table117:FF:10400-106A4
 }}

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FF:10400-106A4: Difference between revisions

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Latest revision as of 13:59, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0