FF:10399-106A3: Difference between revisions

Latest revision as of 13:59, 3 June 2020

Name:	acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh)
Species:	Human (Homo sapiens)
Library ID:	CNhs10722
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	1 year old child
sex	male
age	1
cell type	monoblast
cell line	THP-1
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005753

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10722		CAGE		DRX007813		DRR008685

Accession ID Hg19

Library id		BAM		CTSS
CNhs10722		DRZ000110		DRZ001495

Accession ID Hg38

Library id		BAM		CTSS
CNhs10722		DRZ011460		DRZ012845

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0265
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.699
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	1.08
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0426
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0437
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.229
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.291
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.395
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.512
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.529
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.284
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.116
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.116
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.142
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10722

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.118
MA0003.1	MA0003.1	0.998
MA0004.1	MA0004.1	0.198
MA0006.1	MA0006.1	0.171
MA0007.1	MA0007.1	0.352
MA0009.1	MA0009.1	0.0797
MA0014.1	MA0014.1	0.71
MA0017.1	MA0017.1	0.00114
MA0018.2	MA0018.2	0.105
MA0019.1	MA0019.1	0.313
MA0024.1	MA0024.1	9.71378e-10
MA0025.1	MA0025.1	0.0455
MA0027.1	MA0027.1	0.898
MA0028.1	MA0028.1	8.17334e-8
MA0029.1	MA0029.1	0.722
MA0030.1	MA0030.1	0.0217
MA0031.1	MA0031.1	0.00409
MA0035.2	MA0035.2	0.979
MA0038.1	MA0038.1	0.242
MA0039.2	MA0039.2	0.448
MA0040.1	MA0040.1	0.126
MA0041.1	MA0041.1	0.94
MA0042.1	MA0042.1	0.436
MA0043.1	MA0043.1	0.0315
MA0046.1	MA0046.1	0.579
MA0047.2	MA0047.2	0.183
MA0048.1	MA0048.1	0.0591
MA0050.1	MA0050.1	0.455
MA0051.1	MA0051.1	0.78
MA0052.1	MA0052.1	0.414
MA0055.1	MA0055.1	0.011
MA0057.1	MA0057.1	0.796
MA0058.1	MA0058.1	0.103
MA0059.1	MA0059.1	0.00242
MA0060.1	MA0060.1	9.63103e-6
MA0061.1	MA0061.1	0.639
MA0062.2	MA0062.2	6.08435e-14
MA0065.2	MA0065.2	0.0387
MA0066.1	MA0066.1	0.473
MA0067.1	MA0067.1	0.373
MA0068.1	MA0068.1	0.727
MA0069.1	MA0069.1	0.354
MA0070.1	MA0070.1	0.482
MA0071.1	MA0071.1	0.0878
MA0072.1	MA0072.1	0.529
MA0073.1	MA0073.1	0.641
MA0074.1	MA0074.1	0.201
MA0076.1	MA0076.1	4.96973e-8
MA0077.1	MA0077.1	0.666
MA0078.1	MA0078.1	0.581
MA0079.2	MA0079.2	0.17
MA0080.2	MA0080.2	2.5022e-12
MA0081.1	MA0081.1	0.0012
MA0083.1	MA0083.1	0.517
MA0084.1	MA0084.1	0.0497
MA0087.1	MA0087.1	0.131
MA0088.1	MA0088.1	0.0104
MA0090.1	MA0090.1	2.61034e-5
MA0091.1	MA0091.1	0.431
MA0092.1	MA0092.1	0.478
MA0093.1	MA0093.1	0.145
MA0099.2	MA0099.2	1.28074e-5
MA0100.1	MA0100.1	4.59036e-6
MA0101.1	MA0101.1	0.224
MA0102.2	MA0102.2	5.54225e-5
MA0103.1	MA0103.1	0.951
MA0104.2	MA0104.2	3.15206e-4
MA0105.1	MA0105.1	0.201
MA0106.1	MA0106.1	0.752
MA0107.1	MA0107.1	0.00853
MA0108.2	MA0108.2	5.11052e-7
MA0111.1	MA0111.1	0.154
MA0112.2	MA0112.2	0.213
MA0113.1	MA0113.1	0.957
MA0114.1	MA0114.1	0.0033
MA0115.1	MA0115.1	0.106
MA0116.1	MA0116.1	0.00106
MA0117.1	MA0117.1	0.661
MA0119.1	MA0119.1	0.934
MA0122.1	MA0122.1	0.327
MA0124.1	MA0124.1	0.523
MA0125.1	MA0125.1	0.475
MA0131.1	MA0131.1	0.00672
MA0135.1	MA0135.1	0.524
MA0136.1	MA0136.1	9.30278e-21
MA0137.2	MA0137.2	0.627
MA0138.2	MA0138.2	0.275
MA0139.1	MA0139.1	0.735
MA0140.1	MA0140.1	0.648
MA0141.1	MA0141.1	0.104
MA0142.1	MA0142.1	0.795
MA0143.1	MA0143.1	0.785
MA0144.1	MA0144.1	0.804
MA0145.1	MA0145.1	0.718
MA0146.1	MA0146.1	0.201
MA0147.1	MA0147.1	2.07178e-4
MA0148.1	MA0148.1	0.0796
MA0149.1	MA0149.1	0.48
MA0150.1	MA0150.1	0.0843
MA0152.1	MA0152.1	0.471
MA0153.1	MA0153.1	0.168
MA0154.1	MA0154.1	0.46
MA0155.1	MA0155.1	0.171
MA0156.1	MA0156.1	7.10863e-17
MA0157.1	MA0157.1	0.0156
MA0159.1	MA0159.1	0.909
MA0160.1	MA0160.1	0.288
MA0162.1	MA0162.1	0.565
MA0163.1	MA0163.1	1.0312e-9
MA0164.1	MA0164.1	0.779
MA0258.1	MA0258.1	0.0743
MA0259.1	MA0259.1	0.0607

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10722

Novel motif	Logo	P-value
1	1	0.041
10	10	0.0156
100	100	0.158
101	101	0.264
102	102	0.803
103	103	0.719
104	104	0.697
105	105	0.781
106	106	0.0874
107	107	0.146
108	108	0.426
109	109	0.0228
11	11	0.122
110	110	0.251
111	111	0.477
112	112	0.65
113	113	0.152
114	114	0.223
115	115	0.359
116	116	0.626
117	117	0.0555
118	118	0.176
119	119	0.878
12	12	0.802
120	120	0.514
121	121	0.899
122	122	0.0751
123	123	0.953
124	124	0.227
125	125	0.485
126	126	0.533
127	127	0.0855
128	128	0.101
129	129	0.899
13	13	0.00104
130	130	0.516
131	131	0.00929
132	132	0.921
133	133	0.345
134	134	0.456
135	135	0.222
136	136	0.197
137	137	0.448
138	138	0.909
139	139	0.675
14	14	0.726
140	140	0.192
141	141	0.825
142	142	0.795
143	143	0.333
144	144	0.717
145	145	0.596
146	146	0.753
147	147	0.143
148	148	0.0258
149	149	0.188
15	15	0.251
150	150	0.533
151	151	0.484
152	152	0.0569
153	153	0.462
154	154	0.863
155	155	0.0714
156	156	0.791
157	157	0.595
158	158	0.431
159	159	0.505
16	16	0.747
160	160	0.765
161	161	0.111
162	162	0.538
163	163	0.561
164	164	0.473
165	165	0.0451
166	166	0.293
167	167	0.401
168	168	0.976
169	169	0.98
17	17	0.576
18	18	0.909
19	19	0.846
2	2	0.261
20	20	0.296
21	21	0.284
22	22	0.826
23	23	0.00888
24	24	0.0299
25	25	0.412
26	26	0.608
27	27	0.527
28	28	0.873
29	29	0.0141
3	3	0.0355
30	30	0.0849
31	31	0.487
32	32	0.102
33	33	0.36
34	34	0.534
35	35	0.494
36	36	0.0474
37	37	0.4
38	38	0.229
39	39	0.247
4	4	0.115
40	40	0.333
41	41	0.861
42	42	0.131
43	43	0.863
44	44	0.446
45	45	0.284
46	46	0.169
47	47	0.0746
48	48	0.0505
49	49	0.809
5	5	0.68
50	50	0.801
51	51	0.847
52	52	0.0977
53	53	0.395
54	54	0.504
55	55	0.564
56	56	0.771
57	57	0.239
58	58	0.24
59	59	0.752
6	6	0.559
60	60	0.293
61	61	0.0996
62	62	0.351
63	63	0.95
64	64	0.314
65	65	0.79
66	66	0.00684
67	67	0.376
68	68	0.171
69	69	0.361
7	7	0.174
70	70	0.261
71	71	0.0732
72	72	0.741
73	73	0.761
74	74	0.756
75	75	0.038
76	76	0.237
77	77	0.486
78	78	0.034
79	79	0.232
8	8	0.558
80	80	0.249
81	81	0.408
82	82	0.651
83	83	0.817
84	84	0.857
85	85	0.0248
86	86	0.967
87	87	0.0361
88	88	0.397
89	89	0.394
9	9	0.621
90	90	0.0681
91	91	0.18
92	92	0.0885
93	93	0.648
94	94	0.884
95	95	0.00392
96	96	0.635
97	97	0.556
98	98	0.546
99	99	0.439

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10722

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101370 THP-1 cell sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101370 (THP-1 cell sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0102332 (monocytic leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007708
+|DRA_sample_Accession=CAGE@SAMD00005753
-|accession_numbers=CAGE;DRX007813;DRR008685;DRZ000110;DRZ001495
+|accession_numbers=CAGE;DRX007813;DRR008685;DRZ000110;DRZ001495;DRZ011460;DRZ012845
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000738,CL:0002087,CL:0000255,CL:0000576
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr16:85932760..85932775,+!p1@IRF8!2.52!327.21!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.31!202.16!SPI1;;chr6:135502501..135502546,+!p1@MYB!2.02!124.13!MYB;;chr2:68592406..68592424,+!p1@PLEK!1.92!82.65!PLEK;;chr9:96717629..96717644,-!p1@BARX1!1.82!65.75!BARX1;;chr19:33793430..33793447,-!p1@CEBPA!1.80!249.79!CEBPA;;chr12:54778471..54778528,-!p1@ZNF385A!1.74!54.38!ZNF385A;;chr2:63277948..63277974,+!p1@OTX1!1.72!51.00!OTX1;;chr1:92951607..92951661,-!p1@GFI1!1.67!45.78!GFI1;;chr7:115670804..115670825,-!p1@TFEC!1.67!45.47!TFEC;;chr3:18486354..18486377,-!p2@SATB1!1.65!54.69!SATB1;;chr6:135502408..135502459,+!p2@MYB!1.62!47.01!MYB;;chr13:72441315..72441454,-!p1@DACH1!1.57!70.36!DACH1;;chr1:92949331..92949377,-!p2@GFI1!1.53!32.57!GFI1;;chr10:31288398..31288455,-!p2@ZNF438!1.51!35.95!ZNF438;;chr2:175199675..175199688,+!p1@SP9!1.51!31.03!SP9;;chr7:50344289..50344323,+!p1@IKZF1!1.50!30.42!IKZF1;;chr1:156460436..156460462,-!p7@MEF2D!1.49!30.11!MEF2D;;chr1:50889103..50889145,-!p1@DMRTA2!1.46!27.65!DMRTA2;;chr11:47400062..47400077,-!p2@SPI1!1.44!26.42!SPI1;;chr2:200322654..200322707,-!p2@SATB2!1.43!37.18!SATB2;;chr6:135516877..135516900,+!p5@MYB!1.43!25.81!MYB;;chr1:41157363..41157416,+!p1@NFYC!1.42!460.86!NFYC;;chr1:41157421..41157482,+!p2@NFYC!1.40!266.99!NFYC;;chr6:85473156..85473210,-!p2@TBX18!1.39!28.27!TBX18;;chr7:137620650..137620677,-!p3@CREB3L2!1.39!23.35!CREB3L2;;chr5:72744594..72744609,-!p1@FOXD1!1.35!95.24!FOXD1;;chr7:137620684..137620711,-!p4@CREB3L2!1.34!20.89!CREB3L2;;chr7:27205106..27205134,-!p2@HOXA9!1.33!20.28!HOXA9;;chr1:40942922..40942997,+!p1@ZNF642!1.31!50.08!ZNF642;;chr7:113726357..113726443,+!p1@FOXP2!1.31!33.49!FOXP2;;chr2:63277978..63277995,+!p2@OTX1!1.29!18.43!OTX1;;chr2:145277640..145277771,-!p1@ZEB2!1.28!238.11!ZEB2;;chr6:34204973..34204990,+!p4@HMGA1!1.28!236.58!HMGA1;;chr7:27205136..27205164,-!p1@HOXA9!1.28!18.13!HOXA9;;chr1:156470515..156470542,-!p2@MEF2D!1.27!90.02!MEF2D;;chr3:157824001..157824078,-!p2@SHOX2!1.27!17.51!SHOX2;;chr5:88178983..88179012,-!p1@MEF2C!1.26!130.88!MEF2C;;chr1:40997285..40997352,+!p1@ZNF684!1.26!59.91!ZNF684;;chr7:27213893..27213954,-!p1@HOXA10!1.26!17.21!HOXA10;;chr1:40997363..40997392,+!p2@ZNF684!1.25!21.81!ZNF684;;chr6:135502472..135502489,+!p3@MYB!1.25!16.90!MYB;;chr14:75988771..75988826,+!p1@BATF!1.24!21.81!BATF;;chr7:50343634..50343717,+!p2@IKZF1!1.23!15.98!IKZF1;;chr3:157824202..157824211,-!p3@SHOX2!1.22!15.67!SHOX2;;chr18:22805268..22805280,-!p8@ZNF521!1.21!15.36!ZNF521;;chr7:27224795..27224840,-!p2@HOXA11!1.21!15.05!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.20!14.75!HOXA11;;chr11:47399996..47400014,-!p4@SPI1!1.20!14.75!SPI1;;chr1:247242048..247242098,-!p1@ZNF670,p1@ZNF695!1.19!51.92!ZNF670;;chr7:128577972..128578047,+!p1@IRF5!1.19!23.04!IRF5;;chr16:54320646..54320672,-!p2@IRX3!1.19!22.12!IRX3;;chr18:22932080..22932170,-!p1@ZNF521!1.17!58.38!ZNF521;;chr16:54320617..54320643,-!p3@IRX3!1.17!17.51!IRX3;;chr1:92952473..92952489,-!p3@GFI1!1.17!13.83!GFI1;;chr13:41593425..41593480,-!p1@ELF1!1.12!77.73!ELF1;;chr1:247171316..247171336,-!p3@ZNF695!1.12!18.43!ZNF695;;chr6:135516909..135516925,+!p6@MYB!1.12!12.29!MYB;;chr2:175199697..175199706,+!p2@SP9!1.11!11.98!SP9;;chr18:55102598..55102623,+!p1@ONECUT2!1.11!11.98!ONECUT2;;chr20:42295745..42295765,+!p1@MYBL2!1.10!188.65!MYBL2;;chr1:167298300..167298319,+!p2@POU2F1!1.10!11.68!POU2F1;;chr11:47399947..47399961,-!p3@SPI1!1.09!11.37!SPI1;;chr13:72441074..72441172,-!p2@DACH1!1.09!11.37!DACH1;;chr2:100759037..100759058,-!p2@AFF3!1.09!11.37!AFF3;;chr17:41277372..41277418,-!p1@BRCA1!1.07!39.02!BRCA1;;chrY:21906594..21906622,-!p1@KDM5D!1.07!10.75!KDM5D;;chr1:156460473..156460486,-!p12@MEF2D!1.06!10.45!MEF2D;;chr1:3569072..3569093,+!p1@TP73!1.06!10.45!TP73;;chr3:18480217..18480239,-!p3@SATB1!1.06!10.45!SATB1;;chr7:27239703..27239715,-!p1@HOXA13!1.05!10.14!HOXA13;;chr21:34442439..34442455,+!p1@OLIG1!1.05!10.14!OLIG1;;chr10:31288370..31288393,-!p3@ZNF438!1.05!10.14!ZNF438;;chr15:57511609..57511651,+!p2@TCF12!1.04!16.90!TCF12;;chr20:42295713..42295738,+!p2@MYBL2!1.03!58.38!MYBL2;;chr16:54320675..54320715,-!p1@IRX3!1.02!20.59!IRX3;;chr17:79881332..79881348,-!p3@MAFG!1.02!14.13!MAFG;;chr16:54320158..54320200,-!p5@IRX3!1.02!13.83!IRX3;;chr16:54319010..54319041,-!p8@IRX3!1.02!9.52!IRX3;;chr18:55102628..55102646,+!p2@ONECUT2!1.02!9.52!ONECUT2;;chr2:200322229..200322251,-!p3@SATB2!1.02!9.52!SATB2;;chr11:47400032..47400043,-!p5@SPI1!1.01!9.22!SPI1;;chr1:167298384..167298412,+!p3@POU2F1!1.01!9.22!POU2F1;;chr1:92949505..92949543,-!p5@GFI1!1.00!8.91!GFI1;;chr1:156470494..156470505,-!p3@MEF2D!0.99!12.90!MEF2D;;chr2:68592394..68592405,+!p2@PLEK!0.98!8.60!PLEK;;chr7:113726226..113726245,+!p3@FOXP2!0.98!8.60!FOXP2;;chr7:27239740..27239759,-!p2@HOXA13!0.97!8.30!HOXA13;;chr3:18467290..18467311,-!p8@SATB1!0.97!8.30!SATB1;;chr11:128563948..128564003,+!p1@FLI1!0.96!100.16!FLI1;;chr19:13213662..13213686,-!p1@LYL1!0.96!12.29!LYL1;;chr16:54320280..54320291,-!p9@IRX3!0.95!7.99!IRX3;;chr7:19157248..19157268,-!p1@TWIST1!0.94!21.81!TWIST1;;chr7:50344251..50344288,+!p3@IKZF1!0.94!7.68!IKZF1;;chr11:47400045..47400060,-!p6@SPI1!0.94!7.68!SPI1;;chr20:21378152..21378169,-!p1@NKX2-4!0.94!7.68!NKX2-4;;chr17:48072574..48072597,-!p1@DLX3!0.92!7.37!DLX3;;chr1:40627038..40627071,+!p1@RLF!0.91!97.09!RLF;;chr3:71630980..71631110,-!p3@FOXP1!0.91!26.12!FOXP1;;chr2:102091566..102091581,-!p1@RFX8!0.91!7.07!RFX8;;chr1:41157266..41157314,+!p3@NFYC!0.90!62.06!NFYC;;chr2:145277882..145277967,-!p3@ZEB2!0.90!12.29!ZEB2;;chr1:247171347..247171366,-!p2@ZNF695!0.89!12.60!ZNF695;;chr12:54694758..54694805,-!p1@NFE2!0.89!8.30!NFE2;;chrY:21906761..21906810,-!p2@KDM5D!0.89!6.76!KDM5D;;chr21:36421535..36421610,-!p2@RUNX1!0.88!24.58!RUNX1;;chr9:126774018..126774055,+!p1@LHX2!0.87!6.45!LHX2;;chr10:135044190..135044229,+!p3@UTF1!0.87!6.45!UTF1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.86!30.42!TAL1;;chr19:20011744..20011770,+!p1@ZNF93!0.86!25.50!ZNF93;;chr8:145669791..145669834,-!p1@TONSL!0.86!19.05!TONSL;;chr2:185463247..185463263,+!p1@ZNF804A!0.85!11.06!ZNF804A;;chr1:41157641..41157665,+!p7@NFYC!0.85!7.99!NFYC;;chr19:13213954..13214021,-!p4@LYL1!0.85!6.14!LYL1;;chr19:22605097..22605121,-!p2@ZNF98!0.85!6.14!ZNF98;;chr19:23299814..23299844,+!p1@ZNF730!0.84!7.37!ZNF730;;chr19:20011775..20011800,+!p2@ZNF93!0.83!10.75!ZNF93;;chr1:221052733..221052749,+!p2@HLX!0.83!7.68!HLX;;chr3:157823517..157823562,-!p1@SHOX2!0.83!6.14!SHOX2;;chr2:145275982..145276003,-!p7@ZEB2!0.83!5.84!ZEB2;;chr2:200320768..200320800,-!p4@SATB2!0.83!5.84!SATB2;;chr18:22804637..22804660,-!p10@ZNF521!0.83!5.84!ZNF521;;chr18:22932004..22932021,-!p2@ZNF521!0.83!5.84!ZNF521;;chr12:54694807..54694832,-!p3@NFE2!0.83!5.84!NFE2;;chr16:54964740..54964789,+!p1@IRX5!0.82!8.30!IRX5;;chr10:22292591..22292606,-!p2@DNAJC1!0.81!9.22!DNAJC1;;chr1:41204530..41204541,+!p8@NFYC!0.81!6.76!NFYC;;chr2:145275947..145275981,-!p10@ZEB2!0.81!5.53!ZEB2;;chr13:100634031..100634045,+!p1@ZIC2!0.81!5.53!ZIC2;;chr5:122424918..122424944,+!p1@PRDM6!0.81!5.53!PRDM6;;chr19:20011731..20011743,+!p3@ZNF93!0.80!7.07!ZNF93;;chr1:25256756..25256774,-!p1@RUNX3!0.79!10.14!RUNX3;;chrX:66763856..66763896,+!p1@AR!0.79!7.68!AR;;chr19:2867298..2867317,+!p2@ZNF556!0.79!5.22!ZNF556;;chr16:54320101..54320125,-!p4@IRX3!0.78!7.37!IRX3;;chr5:321810..321877,+!p1@AHRR!0.77!16.59!AHRR;;chr6:144385698..144385742,-!p2@PLAGL1!0.77!6.14!PLAGL1;;chr8:65492915..65492932,+!p1@BHLHE22!0.77!4.92!BHLHE22;;chr19:22605136..22605154,-!p1@ZNF98!0.77!4.92!ZNF98;;chr19:50922187..50922204,+!p1@SPIB!0.77!4.92!SPIB;;chr7:64838786..64838809,+!p2@ZNF92!0.75!28.88!ZNF92;;chr7:114054885..114054910,+!p4@FOXP2!0.75!4.61!FOXP2;;chr7:35293685..35293718,-!p1@TBX20!0.75!4.61!TBX20;;chr1:156460402..156460417,-!p22@MEF2D!0.75!4.61!MEF2D;;chr3:138665937..138665968,-!p1@FOXL2!0.75!4.61!FOXL2;;chr3:18487057..18487105,-!p4@SATB1!0.75!4.61!SATB1;;chr7:64363638..64363667,+!p1@ZNF273!0.74!24.89!ZNF273;;chr19:22817119..22817145,+!p1@ZNF492!0.74!7.99!ZNF492;;chr1:221052994..221053008,+!p6@HLX!0.73!5.22!HLX;;chr19:21950332..21950356,-!p2@ZNF100!0.72!9.83!ZNF100;;chr1:40367530..40367597,-!p1@MYCL1!0.72!8.30!MYCL1;;chr20:50159198..50159299,-!p1@NFATC2!0.72!6.45!NFATC2;;chr19:13213704..13213726,-!p3@LYL1!0.72!5.84!LYL1;;chr16:88497018..88497035,+!p@chr16:88497018..88497035,+!0.72!4.30!ZNF469;;chr5:71803177..71803255,-!p1@ZNF366!0.72!4.30!ZNF366;;chr5:88120151..88120177,-!p6@MEF2C!0.72!4.30!MEF2C;;chr9:1050331..1050363,+!p1@DMRT2!0.72!4.30!DMRT2;;chrY:2803415..2803468,+!p1@ZFY!0.72!4.30!ZFY;;chr2:100759010..100759035,-!p1@AFF3!0.72!4.30!AFF3;;chr2:200322711..200322722,-!p10@SATB2!0.72!4.30!SATB2;;chr2:200322723..200322739,-!p6@SATB2!0.72!4.30!SATB2;;chr21:34442540..34442560,+!p2@OLIG1!0.72!4.30!OLIG1;;chr1:43148059..43148108,+!p1@YBX1!0.71!300.79!YBX1;;chr2:60780607..60780624,-!p2@BCL11A!0.71!14.13!BCL11A;;chr1:45805872..45805900,+!p2@TOE1!0.71!10.75!TOE1;;chr4:87857474..87857489,+!p7@AFF1!0.71!7.68!AFF1;;chr16:29818160..29818188,+!p6@MAZ!0.70!21.20!MAZ;;chr5:88179017..88179046,-!p2@MEF2C!0.70!17.82!MEF2C;;chr1:40915725..40915808,+!p1@ZNF643!0.70!13.21!ZNF643;;chr2:208031943..208031978,-!p5@KLF7!0.70!5.53!KLF7;;chr20:21378129..21378142,-!p2@NKX2-4!0.70!3.99!NKX2-4;;chr6:135513595..135513617,+!p4@MYB!0.70!3.99!MYB;;chr11:19262461..19262476,-!p5@E2F8!0.70!3.99!E2F8;;chr11:32457075..32457095,-!p1@WT1!0.70!3.99!WT1;;chr9:137217986..137218049,+!p3@RXRA!0.69!12.29!RXRA;;chr2:71127699..71127744,+!p1@VAX2!0.69!8.60!VAX2;;chr1:23857698..23857733,-!p1@E2F2!0.69!7.68!E2F2;;chr1:41157326..41157337,+!p5@NFYC!0.69!6.45!NFYC;;chr6:45390269..45390298,+!p5@RUNX2!0.68!6.76!RUNX2;;chr1:247242107..247242120,-!p2@ZNF670!0.67!6.14!ZNF670;;chr1:167298425..167298440,+!p8@POU2F1!0.67!3.69!POU2F1;;chr21:36421518..36421532,-!p11@RUNX1!0.67!3.69!RUNX1;;chr11:19262421..19262455,-!p3@E2F8!0.67!3.69!E2F8;;chr11:44331576..44331650,-!p1@ALX4!0.67!3.69!ALX4;;chr13:100623375..100623425,-!p1@ZIC5!0.67!3.69!ZIC5;;chr13:72440901..72440968,-!p4@DACH1!0.67!3.69!DACH1;;chr16:54320322..54320343,-!p7@IRX3!0.67!3.69!IRX3;;chr2:185463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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528fresh%2529.CNhs10722.10399-106A3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528fresh%2529.CNhs10722.10399-106A3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528fresh%2529.CNhs10722.10399-106A3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528fresh%2529.CNhs10722.10399-106A3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M5%2529%2520cell%2520line%253aTHP-1%2520%2528fresh%2529.CNhs10722.10399-106A3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10399-106A3
 |is_a=EFO:0002091;;FF:0000210;;FF:0101370;;FF:0101883
 |is_obsolete=
 |library_id=CNhs10722
+|library_id_phase_based=2:CNhs10722
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10399
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10399
 |name=acute myeloid leukemia (FAB M5) cell line:THP-1 (fresh)
 |namespace=FANTOM5
@@ Line 51: / Line 62: @@
 |profile_rnaseq=
 |profile_srnaseq=
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10399-106A3;search_select_hide=table117:FF:10399-106A3
 }}

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FF:10399-106A3: Difference between revisions

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Latest revision as of 13:59, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0