FF:10837-111D9: Difference between revisions

Latest revision as of 15:08, 3 June 2020

Name:	acute myeloid leukemia (FAB M6) cell line:F-36P
Species:	Human (Homo sapiens)
Library ID:	CNhs13505
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	male
age	65
cell type	erythroblast
cell line	F-36P
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004812

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13505		CAGE		DRX007819		DRR008691

Accession ID Hg19

Library id		BAM		CTSS
CNhs13505		DRZ000116		DRZ001501

Accession ID Hg38

Library id		BAM		CTSS
CNhs13505		DRZ011466		DRZ012851

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.218
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.538
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.104
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0615
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.203
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0484
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0.104
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.00705
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0.047
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.524
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.184
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.788
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0395
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.507
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.543
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.188
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13505

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0216
MA0003.1	MA0003.1	0.796
MA0004.1	MA0004.1	0.162
MA0006.1	MA0006.1	0.425
MA0007.1	MA0007.1	0.796
MA0009.1	MA0009.1	0.394
MA0014.1	MA0014.1	0.902
MA0017.1	MA0017.1	0.135
MA0018.2	MA0018.2	3.54138e-4
MA0019.1	MA0019.1	0.329
MA0024.1	MA0024.1	1.48673e-7
MA0025.1	MA0025.1	0.0705
MA0027.1	MA0027.1	0.528
MA0028.1	MA0028.1	4.91433e-7
MA0029.1	MA0029.1	0.165
MA0030.1	MA0030.1	0.0126
MA0031.1	MA0031.1	0.264
MA0035.2	MA0035.2	7.27475e-24
MA0038.1	MA0038.1	0.0126
MA0039.2	MA0039.2	0.681
MA0040.1	MA0040.1	0.0481
MA0041.1	MA0041.1	0.152
MA0042.1	MA0042.1	0.42
MA0043.1	MA0043.1	1.16141e-4
MA0046.1	MA0046.1	0.454
MA0047.2	MA0047.2	0.0961
MA0048.1	MA0048.1	0.317
MA0050.1	MA0050.1	0.0929
MA0051.1	MA0051.1	0.313
MA0052.1	MA0052.1	3.67192e-4
MA0055.1	MA0055.1	0.00828
MA0057.1	MA0057.1	0.286
MA0058.1	MA0058.1	0.111
MA0059.1	MA0059.1	0.00107
MA0060.1	MA0060.1	1.17438e-10
MA0061.1	MA0061.1	0.883
MA0062.2	MA0062.2	8.85822e-10
MA0065.2	MA0065.2	0.0191
MA0066.1	MA0066.1	0.503
MA0067.1	MA0067.1	0.359
MA0068.1	MA0068.1	0.147
MA0069.1	MA0069.1	0.0552
MA0070.1	MA0070.1	0.334
MA0071.1	MA0071.1	0.124
MA0072.1	MA0072.1	0.491
MA0073.1	MA0073.1	0.931
MA0074.1	MA0074.1	0.249
MA0076.1	MA0076.1	1.63238e-7
MA0077.1	MA0077.1	0.318
MA0078.1	MA0078.1	0.36
MA0079.2	MA0079.2	0.641
MA0080.2	MA0080.2	1.01389e-7
MA0081.1	MA0081.1	0.00387
MA0083.1	MA0083.1	0.0106
MA0084.1	MA0084.1	0.607
MA0087.1	MA0087.1	0.0706
MA0088.1	MA0088.1	1.01087e-4
MA0090.1	MA0090.1	0.00412
MA0091.1	MA0091.1	0.657
MA0092.1	MA0092.1	0.447
MA0093.1	MA0093.1	0.126
MA0099.2	MA0099.2	1.34985e-6
MA0100.1	MA0100.1	0.0257
MA0101.1	MA0101.1	0.849
MA0102.2	MA0102.2	0.0177
MA0103.1	MA0103.1	0.905
MA0104.2	MA0104.2	7.51539e-4
MA0105.1	MA0105.1	0.0029
MA0106.1	MA0106.1	0.805
MA0107.1	MA0107.1	0.198
MA0108.2	MA0108.2	1.06016e-13
MA0111.1	MA0111.1	0.0381
MA0112.2	MA0112.2	0.105
MA0113.1	MA0113.1	0.318
MA0114.1	MA0114.1	0.187
MA0115.1	MA0115.1	0.451
MA0116.1	MA0116.1	2.27922e-4
MA0117.1	MA0117.1	0.688
MA0119.1	MA0119.1	0.455
MA0122.1	MA0122.1	0.68
MA0124.1	MA0124.1	0.634
MA0125.1	MA0125.1	0.182
MA0131.1	MA0131.1	0.555
MA0135.1	MA0135.1	0.512
MA0136.1	MA0136.1	4.54081e-9
MA0137.2	MA0137.2	0.197
MA0138.2	MA0138.2	0.658
MA0139.1	MA0139.1	0.309
MA0140.1	MA0140.1	8.72511e-37
MA0141.1	MA0141.1	0.0657
MA0142.1	MA0142.1	0.975
MA0143.1	MA0143.1	0.0463
MA0144.1	MA0144.1	0.153
MA0145.1	MA0145.1	0.331
MA0146.1	MA0146.1	0.124
MA0147.1	MA0147.1	6.09774e-5
MA0148.1	MA0148.1	0.359
MA0149.1	MA0149.1	0.0696
MA0150.1	MA0150.1	0.302
MA0152.1	MA0152.1	0.143
MA0153.1	MA0153.1	0.0264
MA0154.1	MA0154.1	0.0847
MA0155.1	MA0155.1	0.968
MA0156.1	MA0156.1	2.26997e-7
MA0157.1	MA0157.1	0.503
MA0159.1	MA0159.1	0.751
MA0160.1	MA0160.1	0.0525
MA0162.1	MA0162.1	0.483
MA0163.1	MA0163.1	1.29207e-13
MA0164.1	MA0164.1	0.832
MA0258.1	MA0258.1	0.165
MA0259.1	MA0259.1	0.0587

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13505

Novel motif	Logo	P-value
1	1	0.0192
10	10	0.022
100	100	0.476
101	101	0.235
102	102	0.464
103	103	0.138
104	104	0.771
105	105	0.727
106	106	0.453
107	107	0.397
108	108	0.368
109	109	0.0217
11	11	0.0555
110	110	0.411
111	111	0.0204
112	112	0.401
113	113	0.465
114	114	0.0156
115	115	0.225
116	116	0.168
117	117	0.0392
118	118	0.185
119	119	0.385
12	12	0.603
120	120	0.911
121	121	0.734
122	122	0.71
123	123	0.28
124	124	0.0356
125	125	0.259
126	126	0.33
127	127	0.136
128	128	0.319
129	129	0.613
13	13	0.0067
130	130	0.542
131	131	0.539
132	132	0.367
133	133	0.884
134	134	0.314
135	135	0.681
136	136	0.377
137	137	0.752
138	138	0.721
139	139	0.283
14	14	0.323
140	140	0.792
141	141	0.515
142	142	0.664
143	143	0.801
144	144	0.335
145	145	0.21
146	146	0.986
147	147	0.0699
148	148	0.435
149	149	0.2
15	15	0.228
150	150	0.66
151	151	0.818
152	152	0.239
153	153	0.184
154	154	0.899
155	155	0.221
156	156	0.25
157	157	0.441
158	158	0.954
159	159	0.37
16	16	0.946
160	160	0.0702
161	161	0.0141
162	162	0.815
163	163	0.109
164	164	0.78
165	165	0.8
166	166	0.275
167	167	0.158
168	168	0.719
169	169	0.435
17	17	0.641
18	18	0.839
19	19	0.778
2	2	0.439
20	20	0.716
21	21	0.105
22	22	0.736
23	23	0.0256
24	24	0.0678
25	25	0.289
26	26	0.0164
27	27	0.856
28	28	0.813
29	29	0.0311
3	3	0.147
30	30	0.106
31	31	0.658
32	32	0.0602
33	33	0.255
34	34	0.773
35	35	0.19
36	36	0.0557
37	37	0.291
38	38	0.353
39	39	0.219
4	4	0.152
40	40	0.279
41	41	0.858
42	42	0.184
43	43	0.533
44	44	0.937
45	45	0.918
46	46	0.19
47	47	0.0424
48	48	0.074
49	49	0.173
5	5	0.561
50	50	0.669
51	51	0.533
52	52	0.264
53	53	0.381
54	54	0.414
55	55	0.224
56	56	0.898
57	57	0.0895
58	58	0.315
59	59	0.691
6	6	0.395
60	60	0.957
61	61	0.472
62	62	0.213
63	63	0.82
64	64	0.231
65	65	0.994
66	66	0.0015
67	67	0.471
68	68	0.504
69	69	0.869
7	7	0.0578
70	70	0.92
71	71	0.0157
72	72	0.962
73	73	0.985
74	74	0.99
75	75	0.0198
76	76	0.221
77	77	0.47
78	78	0.0068
79	79	0.121
8	8	0.0571
80	80	0.0686
81	81	0.427
82	82	0.792
83	83	0.0346
84	84	0.886
85	85	0.837
86	86	0.969
87	87	0.192
88	88	0.185
89	89	0.725
9	9	0.999
90	90	0.0185
91	91	0.642
92	92	0.352
93	93	0.575
94	94	0.556
95	95	0.0179
96	96	0.996
97	97	0.38
98	98	0.228
99	99	0.825

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13505

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101883 acute myeloid leukemia cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007714
+|DRA_sample_Accession=CAGE@SAMD00004812
-|accession_numbers=CAGE;DRX007819;DRR008691;DRZ000116;DRZ001501
+|accession_numbers=CAGE;DRX007819;DRR008691;DRZ000116;DRZ001501;DRZ011466;DRZ012851
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:48644984..48645005,+!p1@GATA1!2.27!183.64!GATA1;;chr3:128212033..128212051,-!p1@GATA2!2.11!128.74!GATA2;;chr2:68592406..68592424,+!p1@PLEK!2.09!123.33!PLEK;;chr19:13213511..13213545,-!p2@LYL1!1.95!95.20!LYL1;;chr9:135854091..135854159,+!p1@GFI1B!1.93!84.65!GFI1B;;chr12:54694758..54694805,-!p1@NFE2!1.88!89.52!NFE2;;chr19:12998003..12998021,-!p1@KLF1!1.82!64.64!KLF1;;chr17:46703687..46703740,-!p1@HOXB9!1.75!55.17!HOXB9;;chr6:135502501..135502546,+!p1@MYB!1.72!60.85!MYB;;chr1:47695003..47695042,-!p2@TAL1!1.62!40.30!TAL1;;chr19:12203100..12203132,+!p1@ZNF788!1.60!77.35!ZNF788;;chr2:68592394..68592405,+!p2@PLEK!1.60!38.40!PLEK;;chr19:22235279..22235301,+!p1@ZNF257!1.56!65.18!ZNF257;;chr12:54694807..54694832,-!p3@NFE2!1.55!34.89!NFE2;;chr19:22193731..22193751,-!p1@ZNF208!1.54!33.81!ZNF208;;chr2:172949484..172949522,+!p1@DLX1!1.51!31.37!DLX1;;chr3:128206762..128206781,-!p2@GATA2!1.46!167.41!GATA2;;chr12:54785074..54785122,-!p2@ZNF385A!1.46!42.46!ZNF385A;;chr8:37963466..37963506,+!p3@ASH2L!1.45!33.54!ASH2L;;chr12:54785054..54785072,-!p4@ZNF385A!1.43!29.21!ZNF385A;;chr5:134369905..134369972,-!p1@PITX1!1.42!38.13!PITX1;;chr1:92949331..92949377,-!p2@GFI1!1.42!25.15!GFI1;;chr2:219849012..219849065,-!p1@FEV!1.40!24.34!FEV;;chr11:47399947..47399961,-!p3@SPI1!1.38!22.99!SPI1;;chr12:54689532..54689551,-!p4@NFE2!1.37!22.18!NFE2;;chr20:31350184..31350200,+!p1@DNMT3B!1.36!44.63!DNMT3B;;chr17:40441354..40441410,+!p2@STAT5A!1.35!21.37!STAT5A;;chr21:36421535..36421610,-!p2@RUNX1!1.32!68.97!RUNX1;;chr1:47697881..47697910,-!p4@TAL1!1.32!20.01!TAL1;;chr6:135502408..135502459,+!p2@MYB!1.27!20.28!MYB;;chr1:47691303..47691319,-!p5@TAL1!1.27!17.58!TAL1;;chr19:11959532..11959593,+!p1@ZNF439!1.24!62.48!ZNF439;;chr11:47400045..47400060,-!p6@SPI1!1.24!16.23!SPI1;;chr1:92951607..92951661,-!p1@GFI1!1.22!15.69!GFI1;;chr19:12267524..12267564,-!p1@ZNF20,p1@ZNF625!1.21!74.10!ZNF20;;chr19:22817119..22817145,+!p1@ZNF492!1.20!24.61!ZNF492;;chr7:63505799..63505904,+!p1@ZNF727!1.20!14.88!ZNF727;;chr19:22605097..22605121,-!p2@ZNF98!1.19!14.33!ZNF98;;chr7:50344289..50344323,+!p1@IKZF1!1.18!14.06!IKZF1;;chrX:48644976..48644983,+!p2@GATA1!1.18!14.06!GATA1;;chr11:113930425..113930471,+!p1@ZBTB16!1.15!18.93!ZBTB16;;chr11:47399996..47400014,-!p4@SPI1!1.15!13.25!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!1.15!12.98!ZNF385A;;chr19:13213555..13213568,-!p5@LYL1!1.15!12.98!LYL1;;chr11:113930291..113930339,+!p2@ZBTB16!1.14!21.10!ZBTB16;;chr6:126240442..126240459,+!p4@NCOA7!1.10!14.88!NCOA7;;chr11:47400078..47400106,-!p1@SPI1!1.09!11.36!SPI1;;chr11:128563948..128564003,+!p1@FLI1!1.08!133.33!FLI1;;chr20:61051039..61051057,-!p1@GATA5!1.08!11.09!GATA5;;chr19:12035913..12035933,+!p1@ZNF700,p1@ZNF763!1.07!70.05!ZNF700;;chr8:128748308..128748324,+!p2@MYC!1.06!293.17!MYC;;chr19:24097706..24097731,+!p2@ZNF726!1.06!20.28!ZNF726;;chr19:12203069..12203094,+!p2@ZNF788!1.06!15.69!ZNF788;;chr6:126240463..126240489,+!p6@NCOA7!1.05!11.63!NCOA7;;chr13:79177703..79177729,-!p2@POU4F1!1.05!10.28!POU4F1;;chr19:22605136..22605154,-!p1@ZNF98!1.04!10.01!ZNF98;;chr19:11071685..11071798,+!p1@SMARCA4!1.03!279.38!SMARCA4;;chr1:45805872..45805900,+!p2@TOE1!1.03!23.80!TOE1;;chr1:47697539..47697573,-!p3@TAL1!1.03!9.74!TAL1;;chr9:20382446..20382493,-!p4@MLLT3!1.02!9.47!MLLT3;;chr5:88178983..88179012,-!p1@MEF2C!1.01!72.75!MEF2C;;chr19:12163769..12163798,-!p1@ZNF878!1.01!12.17!ZNF878;;chr2:16080659..16080685,+!p1@MYCN!1.01!9.20!MYCN;;chr19:12273866..12273935,+!p1@ZNF136!1.00!83.03!ZNF136;;chr19:11925071..11925113,+!p1@ZNF440!1.00!66.26!ZNF440;;chr12:54689552..54689574,-!p6@NFE2!1.00!8.93!NFE2;;chr5:88179017..88179046,-!p2@MEF2C!0.99!36.24!MEF2C;;chr5:134369879..134369898,-!p2@PITX1!0.98!8.65!PITX1;;chr2:219849897..219849928,-!p2@FEV!0.98!8.65!FEV;;chrY:2803415..2803468,+!p1@ZFY!0.98!8.65!ZFY;;chr20:50159198..50159299,-!p1@NFATC2!0.97!12.44!NFATC2;;chr19:57183114..57183145,-!p1@ZNF835!0.97!9.47!ZNF835;;chr6:15401104..15401166,+!p5@JARID2!0.97!8.38!JARID2;;chr19:11998584..11998649,+!p1@ZNF69!0.96!37.05!ZNF69;;chr10:124895472..124895508,+!p1@HMX3!0.96!8.11!HMX3;;chr19:12146483..12146546,-!p1@ZNF433!0.95!30.02!ZNF433;;chr6:126240380..126240430,+!p2@NCOA7!0.95!21.10!NCOA7;;chr19:23299814..23299844,+!p1@ZNF730!0.95!9.74!ZNF730;;chr6:135502472..135502489,+!p3@MYB!0.95!7.84!MYB;;chr20:42295713..42295738,+!p2@MYBL2!0.94!47.33!MYBL2;;chr6:144385698..144385742,-!p2@PLAGL1!0.94!9.47!PLAGL1;;chr7:115670804..115670825,-!p1@TFEC!0.93!7.57!TFEC;;chr1:47696918..47696935,-!p6@TAL1!0.93!7.57!TAL1;;chr20:42295745..42295765,+!p1@MYBL2!0.92!125.76!MYBL2;;chr19:23433144..23433204,-!p1@ZNF724P!0.92!33.81!ZNF724P;;chr2:219849175..219849187,-!p4@FEV!0.92!7.30!FEV;;chr14:74226961..74227020,-!p1@C14orf43!0.91!48.95!C14orf43;;chr9:135854074..135854089,+!p2@GFI1B!0.90!7.03!GFI1B;;chr19:22193706..22193717,-!p2@ZNF208!0.90!7.03!ZNF208;;chr17:42295777..42295816,-!p7@UBTF!0.89!8.38!UBTF;;chr11:47400032..47400043,-!p5@SPI1!0.89!6.76!SPI1;;chr13:95364784..95364806,-!p1@SOX21!0.89!6.76!SOX21;;chr19:10305581..10305646,-!p1@DNMT1!0.87!234.49!DNMT1;;chr10:94449675..94449694,+!p2@HHEX!0.87!17.85!HHEX;;chr5:88179195..88179224,-!p3@MEF2C!0.87!10.55!MEF2C;;chr7:50344251..50344288,+!p3@IKZF1!0.87!6.49!IKZF1;;chr7:57509877..57509895,+!p1@ZNF716!0.87!6.49!ZNF716;;chr2:219849213..219849224,-!p6@FEV!0.86!6.22!FEV;;chrX:48645010..48645015,+!p3@GATA1!0.86!6.22!GATA1;;chr7:19157248..19157268,-!p1@TWIST1!0.85!17.58!TWIST1;;chr16:29819446..29819471,+!p9@MAZ!0.84!18.39!MAZ;;chr8:145669791..145669834,-!p1@TONSL!0.84!17.85!TONSL;;chr7:50343634..50343717,+!p2@IKZF1!0.84!5.95!IKZF1;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.84!5.95!ZNF676;;chr19:58545454..58545498,+!p1@ZSCAN1!0.84!5.95!ZSCAN1;;chr11:113930401..113930422,+!p3@ZBTB16!0.84!5.95!ZBTB16;;chr19:11849700..11849803,-!p1@ZNF823!0.83!29.75!ZNF823;;chr10:94449703..94449718,+!p1@HHEX!0.83!23.80!HHEX;;chr15:66994561..66994597,+!p2@SMAD6!0.83!14.60!SMAD6;;chr19:11071546..11071624,+!p2@SMARCA4!0.82!32.73!SMARCA4;;chr2:145277882..145277967,-!p3@ZEB2!0.82!10.01!ZEB2;;chr14:75988771..75988826,+!p1@BATF!0.82!7.57!BATF;;chr19:12267577..12267593,-!p3@ZNF625!0.82!5.68!ZNF625;;chr12:54694738..54694749,-!p5@NFE2!0.82!5.68!NFE2;;chr13:100634130..100634143,+!p3@ZIC2!0.82!5.68!ZIC2;;chr2:145277640..145277771,-!p1@ZEB2!0.81!78.97!ZEB2;;chr16:29819403..29819442,+!p5@MAZ!0.81!48.41!MAZ;;chr19:11071652..11071682,+!p3@SMARCA4!0.81!20.28!SMARCA4;;chr19:13213496..13213501,-!p10@LYL1!0.81!5.41!LYL1;;chrY:21906594..21906622,-!p1@KDM5D!0.81!5.41!KDM5D;;chr11:47399920..47399931,-!p7@SPI1!0.81!5.41!SPI1;;chr16:88519669..88519726,+!p1@ZFPM1!0.80!52.20!ZFPM1;;chr17:46622440..46622477,-!p5@HOXB2!0.80!5.95!HOXB2;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.79!25.42!TAL1;;chr15:90544532..90544563,+!p1@ZNF710!0.79!10.82!ZNF710;;chr10:97889464..97889494,+!p3@ZNF518A!0.79!10.28!ZNF518A;;chr17:42295682..42295731,-!p17@UBTF!0.79!5.14!UBTF;;chr8:37963559..37963568,+!p6@ASH2L!0.79!5.14!ASH2L;;chr11:65687362..65687436,+!p3@DRAP1!0.78!25.15!DRAP1;;chr1:45805813..45805859,+!p1@TOE1!0.78!25.15!TOE1;;chr9:2015335..2015370,+!p1@SMARCA2!0.77!64.91!SMARCA2;;chr15:41913690..41913753,+!p2@MGA!0.77!12.71!MGA;;chr19:11750566..11750627,+!p1@ZNF833P!0.77!6.76!ZNF833P;;chr1:47697591..47697604,-!p11@TAL1!0.77!4.87!TAL1;;chr18:77155922..77155939,+!p1@NFATC1!0.76!14.06!NFATC1;;chr19:20188776..20188826,+!p1@ZNF90!0.76!13.79!ZNF90;;chr9:2015306..2015323,+!p3@SMARCA2!0.76!13.25!SMARCA2;;chr19:56879534..56879615,+!p3@ZNF542!0.76!7.84!ZNF542;;chr6:126240356..126240379,+!p7@NCOA7!0.76!5.95!NCOA7;;chr8:37963407..37963454,+!p2@ASH2L!0.75!15.15!ASH2L;;chr22:21771656..21771662,+!p1@HIC2!0.75!4.60!HIC2;;chr19:13213399..13213414,-!p6@LYL1!0.75!4.60!LYL1;;chr19:20011744..20011770,+!p1@ZNF93!0.74!18.93!ZNF93;;chr19:24097675..24097699,+!p1@ZNF726!0.74!16.23!ZNF726;;chr5:321810..321877,+!p1@AHRR!0.74!15.42!AHRR;;chr19:19516507..19516539,+!p7@GATAD2A!0.74!14.60!GATAD2A;;chr19:12035937..12035969,+!p3@ZNF700,p4@ZNF763!0.74!6.22!ZNF700;;chr11:65686952..65686975,+!p5@DRAP1!0.73!26.78!DRAP1;;chr6:20402102..20402152,+!p1@E2F3!0.73!20.01!E2F3;;chr17:79881332..79881348,-!p3@MAFG!0.73!6.76!MAFG;;chr10:124895548..124895570,+!p2@HMX3!0.73!4.33!HMX3;;chr1:47698007..47698019,-!p13@TAL1!0.73!4.33!TAL1;;chr7:50348268..50348366,+!p4@IKZF1!0.73!4.33!IKZF1;;chr19:19303731..19303783,+!p1@RFXANK!0.72!111.97!RFXANK;;chr19:21106081..21106115,+!p2@ZNF85!0.71!13.25!ZNF85;;chr2:200322654..200322707,-!p2@SATB2!0.71!6.22!SATB2;;chrX:129244840..129244881,-!p2@ELF4!0.70!17.31!ELF4;;chr9:2017063..2017144,+!p4@SMARCA2!0.70!13.79!SMARCA2;;chr19:11708311..11708332,+!p2@ZNF627!0.70!8.11!ZNF627;;chr19:13213662..13213686,-!p1@LYL1!0.70!6.22!LYL1;;chr8:128747757..128747800,+!p7@MYC!0.70!5.68!MYC;;chr17:46622229..46622257,-!p6@HOXB2!0.70!4.87!HOXB2;;chr17:46655672..46655697,-!p3@HOXB4!0.70!4.06!HOXB4;;chr8:37963511..37963523,+!p4@ASH2L!0.70!4.06!ASH2L;;chr13:100634031..100634045,+!p1@ZIC2!0.70!4.06!ZIC2;;chr19:11708259..11708309,+!p1@ZNF627!0.69!44.63!ZNF627;;chr2:200323414..200323455,-!p1@SATB2!0.69!9.20!SATB2;;chr17:46655704..46655718,-!p2@HOXB4!0.69!6.22!HOXB4;;chr1:247171316..247171336,-!p3@ZNF695!0.69!6.22!ZNF695;;chr12:11802600..11802685,+!p1@ETV6!0.68!65.45!ETV6;;chr19:56879653..56879743,+!p1@ZNF542!0.68!32.18!ZNF542;;chr19:45579725..45579743,-!p1@ZNF296!0.68!19.47!ZNF296;;chr9:2016724..2016752,+!p7@SMARCA2!0.68!7.84!SMARCA2;;chr1:47697965..47697991,-!p7@TAL1!0.68!3.79!TAL1;;chr1:92949505..92949543,-!p5@GFI1!0.68!3.79!GFI1;;chr17:38020392..38020477,-!p1@IKZF3!0.68!3.79!IKZF3;;chr16:29818160..29818188,+!p6@MAZ!0.67!19.47!MAZ;;chr2:185463247..185463263,+!p1@ZNF804A!0.67!7.03!ZNF804A;;chr12:11802547..11802560,+!p5@ETV6!0.67!5.41!ETV6;;chr21:40177845..40177863,+!p1@ETS2!0.66!248.55!ETS2;;chr19:58740266..58740297,+!p1@ZNF544!0.66!29.48!ZNF544;;chr19:52074502..52074587,+!p1@ZNF175!0.66!14.88!ZNF175;;chr19:53758058..53758088,-!p2@ZNF677!0.66!13.25!ZNF677;;chr13:72441315..72441454,-!p1@DACH1!0.66!7.84!DACH1;;chr19:12512062..12512094,-!p1@ZNF799!0.66!7.84!ZNF799;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@@ Line 40: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36P.CNhs13505.10837-111D9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36P.CNhs13505.10837-111D9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36P.CNhs13505.10837-111D9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36P.CNhs13505.10837-111D9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M6%2529%2520cell%2520line%253aF-36P.CNhs13505.10837-111D9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10837-111D9
 |is_a=EFO:0002091;;FF:0000210;;FF:0101883
 |is_obsolete=
 |library_id=CNhs13505
+|library_id_phase_based=2:CNhs13505
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10837
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10837
 |name=acute myeloid leukemia (FAB M6) cell line:F-36P
 |namespace=FANTOM5
@@ Line 49: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13505,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 }}

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FF:10837-111D9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:08, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0