FF:11221-116B6: Difference between revisions

Latest revision as of 16:25, 3 June 2020

Name:	Gingival epithelial cells, donor1 (GEA11)
Species:	Human (Homo sapiens)
Library ID:	CNhs11061
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	gum
dev stage	61 years old adult
sex	female
age	61
cell type	epithelial cell
cell line	NA
company	N/A
collaboration	Mitsuhiro Ohshima (Nihon University School of Dentistry)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	N/A
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005665

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11061		CAGE		DRX008293		DRR009165

Accession ID Hg19

Library id		BAM		CTSS
CNhs11061		DRZ000590		DRZ001975

Accession ID Hg38

Library id		BAM		CTSS
CNhs11061		DRZ011940		DRZ013325

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.1
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0845
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.249
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.126
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.227
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0.0767
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.176
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.569
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.182
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.1
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.238
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.632
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.196
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.294
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.294
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.219
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11061

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.936
MA0003.1	MA0003.1	0.508
MA0004.1	MA0004.1	0.367
MA0006.1	MA0006.1	0.0147
MA0007.1	MA0007.1	0.991
MA0009.1	MA0009.1	0.0886
MA0014.1	MA0014.1	0.102
MA0017.1	MA0017.1	0.764
MA0018.2	MA0018.2	1.00125e-4
MA0019.1	MA0019.1	0.363
MA0024.1	MA0024.1	0.00116
MA0025.1	MA0025.1	0.122
MA0027.1	MA0027.1	0.253
MA0028.1	MA0028.1	0.483
MA0029.1	MA0029.1	0.369
MA0030.1	MA0030.1	0.765
MA0031.1	MA0031.1	0.762
MA0035.2	MA0035.2	0.423
MA0038.1	MA0038.1	0.197
MA0039.2	MA0039.2	0.00117
MA0040.1	MA0040.1	0.417
MA0041.1	MA0041.1	0.346
MA0042.1	MA0042.1	0.901
MA0043.1	MA0043.1	0.00376
MA0046.1	MA0046.1	0.742
MA0047.2	MA0047.2	0.369
MA0048.1	MA0048.1	0.673
MA0050.1	MA0050.1	0.0116
MA0051.1	MA0051.1	0.212
MA0052.1	MA0052.1	0.0592
MA0055.1	MA0055.1	0.0359
MA0057.1	MA0057.1	0.153
MA0058.1	MA0058.1	0.215
MA0059.1	MA0059.1	0.589
MA0060.1	MA0060.1	0.0148
MA0061.1	MA0061.1	0.944
MA0062.2	MA0062.2	0.852
MA0065.2	MA0065.2	0.646
MA0066.1	MA0066.1	0.0676
MA0067.1	MA0067.1	0.0396
MA0068.1	MA0068.1	0.239
MA0069.1	MA0069.1	0.844
MA0070.1	MA0070.1	0.745
MA0071.1	MA0071.1	0.184
MA0072.1	MA0072.1	0.854
MA0073.1	MA0073.1	0.864
MA0074.1	MA0074.1	0.54
MA0076.1	MA0076.1	0.824
MA0077.1	MA0077.1	0.193
MA0078.1	MA0078.1	0.722
MA0079.2	MA0079.2	0.174
MA0080.2	MA0080.2	0.043
MA0081.1	MA0081.1	0.257
MA0083.1	MA0083.1	0.359
MA0084.1	MA0084.1	0.0781
MA0087.1	MA0087.1	0.84
MA0088.1	MA0088.1	0.905
MA0090.1	MA0090.1	8.98103e-6
MA0091.1	MA0091.1	0.0568
MA0092.1	MA0092.1	0.524
MA0093.1	MA0093.1	0.345
MA0099.2	MA0099.2	3.04024e-21
MA0100.1	MA0100.1	0.073
MA0101.1	MA0101.1	0.66
MA0102.2	MA0102.2	0.376
MA0103.1	MA0103.1	6.56969e-7
MA0104.2	MA0104.2	0.137
MA0105.1	MA0105.1	0.63
MA0106.1	MA0106.1	3.02377e-11
MA0107.1	MA0107.1	0.518
MA0108.2	MA0108.2	0.668
MA0111.1	MA0111.1	0.747
MA0112.2	MA0112.2	0.225
MA0113.1	MA0113.1	0.818
MA0114.1	MA0114.1	0.562
MA0115.1	MA0115.1	0.548
MA0116.1	MA0116.1	0.842
MA0117.1	MA0117.1	0.512
MA0119.1	MA0119.1	0.816
MA0122.1	MA0122.1	0.863
MA0124.1	MA0124.1	0.434
MA0125.1	MA0125.1	0.0491
MA0131.1	MA0131.1	0.656
MA0135.1	MA0135.1	0.648
MA0136.1	MA0136.1	0.988
MA0137.2	MA0137.2	0.445
MA0138.2	MA0138.2	0.67
MA0139.1	MA0139.1	0.629
MA0140.1	MA0140.1	0.627
MA0141.1	MA0141.1	0.266
MA0142.1	MA0142.1	0.778
MA0143.1	MA0143.1	0.68
MA0144.1	MA0144.1	0.472
MA0145.1	MA0145.1	0.0284
MA0146.1	MA0146.1	0.168
MA0147.1	MA0147.1	0.208
MA0148.1	MA0148.1	0.24
MA0149.1	MA0149.1	0.0659
MA0150.1	MA0150.1	0.124
MA0152.1	MA0152.1	0.254
MA0153.1	MA0153.1	0.483
MA0154.1	MA0154.1	0.41
MA0155.1	MA0155.1	0.861
MA0156.1	MA0156.1	0.941
MA0157.1	MA0157.1	0.384
MA0159.1	MA0159.1	0.6
MA0160.1	MA0160.1	0.58
MA0162.1	MA0162.1	0.131
MA0163.1	MA0163.1	0.482
MA0164.1	MA0164.1	0.836
MA0258.1	MA0258.1	0.789
MA0259.1	MA0259.1	0.15

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11061

Novel motif	Logo	P-value
1	1	0.674
10	10	0.49
100	100	0.972
101	101	0.0281
102	102	0.356
103	103	0.0775
104	104	0.715
105	105	0.254
106	106	0.0452
107	107	0.0869
108	108	0.531
109	109	0.00617
11	11	0.527
110	110	0.541
111	111	0.447
112	112	0.236
113	113	0.128
114	114	0.378
115	115	0.858
116	116	0.635
117	117	0.387
118	118	0.892
119	119	0.273
12	12	0.931
120	120	0.0526
121	121	0.392
122	122	0.0595
123	123	0.143
124	124	0.0108
125	125	0.898
126	126	0.404
127	127	0.462
128	128	0.482
129	129	0.128
13	13	0.169
130	130	0.875
131	131	0.251
132	132	0.463
133	133	0.0303
134	134	0.481
135	135	0.697
136	136	0.00829
137	137	0.351
138	138	0.906
139	139	0.673
14	14	0.703
140	140	0.88
141	141	0.965
142	142	0.671
143	143	0.667
144	144	0.264
145	145	0.0945
146	146	0.0295
147	147	0.199
148	148	0.834
149	149	0.993
15	15	0.829
150	150	0.13
151	151	0.473
152	152	0.00515
153	153	0.618
154	154	0.779
155	155	0.771
156	156	0.969
157	157	0.544
158	158	0.101
159	159	0.352
16	16	0.0682
160	160	0.578
161	161	0.82
162	162	0.268
163	163	0.254
164	164	0.759
165	165	0.0832
166	166	0.334
167	167	0.0593
168	168	0.145
169	169	0.132
17	17	0.376
18	18	0.556
19	19	0.658
2	2	0.223
20	20	0.777
21	21	0.583
22	22	0.302
23	23	0.296
24	24	0.00729
25	25	0.988
26	26	0.613
27	27	0.4
28	28	0.625
29	29	0.674
3	3	0.603
30	30	0.0623
31	31	0.803
32	32	0.162
33	33	0.12
34	34	0.958
35	35	0.0781
36	36	0.616
37	37	0.163
38	38	0.588
39	39	0.202
4	4	0.646
40	40	0.0524
41	41	0.998
42	42	0.746
43	43	0.685
44	44	0.442
45	45	0.0299
46	46	0.885
47	47	0.662
48	48	0.219
49	49	0.383
5	5	0.945
50	50	0.307
51	51	0.824
52	52	0.125
53	53	0.448
54	54	0.701
55	55	0.0913
56	56	0.289
57	57	0.752
58	58	0.98
59	59	0.309
6	6	0.422
60	60	0.139
61	61	0.65
62	62	0.528
63	63	0.137
64	64	0.898
65	65	0.781
66	66	0.638
67	67	0.557
68	68	0.0619
69	69	0.263
7	7	0.311
70	70	0.0611
71	71	0.857
72	72	0.529
73	73	0.00109
74	74	0.0434
75	75	0.436
76	76	0.811
77	77	0.00578
78	78	0.0281
79	79	0.53
8	8	0.729
80	80	0.924
81	81	0.388
82	82	0.597
83	83	0.831
84	84	0.971
85	85	0.382
86	86	0.79
87	87	0.0027
88	88	0.899
89	89	0.0541
9	9	0.924
90	90	0.567
91	91	0.986
92	92	0.932
93	93	0.998
94	94	0.211
95	95	0.109
96	96	0.542
97	97	0.346
98	98	0.862
99	99	0.0665

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11061

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000254 human gingival epithelial cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0002621 (gingival epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0010371 (ecto-epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0000486 (multilaminar epithelium)
0004807 (respiratory system epithelium)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001828 (gingiva)
0001949 (gingival epithelium)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000254 (human gingival epithelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008185
+|DRA_sample_Accession=CAGE@SAMD00005665
-|accession_numbers=CAGE;DRX008293;DRR009165;DRZ000590;DRZ001975
+|accession_numbers=CAGE;DRX008293;DRR009165;DRZ000590;DRZ001975;DRZ011940;DRZ013325
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0005911,UBERON:0004923,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0010371,UBERON:0003350,UBERON:0003929,UBERON:0000486,UBERON:0004807,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0001828,UBERON:0001949,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002076,CL:0002251,CL:0002621
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.35!224.18!SOX15;;chr1:209979467..209979494,-!p1@IRF6!2.24!192.87!IRF6;;chr1:6479968..6479986,-!p1@HES2!2.09!123.11!HES2;;chr11:34642612..34642646,+!p1@EHF!2.07!115.57!EHF;;chr1:209979411..209979433,-!p2@IRF6!2.04!107.45!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.93!83.49!ZBED2;;chr3:189507432..189507459,+!p1@TP63!1.71!50.25!TP63;;chr6:10415276..10415341,-!p2@TFAP2A!1.64!51.60!TFAP2A;;chr8:10588010..10588030,-!p1@SOX7!1.64!42.71!SOX7;;chr15:83953397..83953425,-!p1@BNC1!1.60!44.26!BNC1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.58!36.72!ZBED1;;chr6:10412600..10412637,-!p1@TFAP2A!1.57!58.56!TFAP2A;;chr5:134369879..134369898,-!p2@PITX1!1.54!33.82!PITX1;;chr5:134369905..134369972,-!p1@PITX1!1.53!49.86!PITX1;;chr15:101069113..101069169,-!p1@CERS3!1.50!30.73!CERS3;;chr12:54785054..54785072,-!p4@ZNF385A!1.44!30.15!ZNF385A;;chr12:54785074..54785122,-!p2@ZNF385A!1.42!38.46!ZNF385A;;chr4:57547454..57547469,-!p1@HOPX!1.37!22.61!HOPX;;chr12:66218836..66218888,+!p1@HMGA2!1.35!191.91!HMGA2;;chr17:7492684..7492778,-!p2@SOX15!1.33!42.90!SOX15;;chr3:111314230..111314241,-!p2@ZBED2!1.29!18.55!ZBED2;;chr5:2751762..2751784,-!p1@IRX2!1.27!17.59!IRX2;;chr11:65686802..65686818,+!p6@DRAP1!1.22!27.06!DRAP1;;chr20:55204351..55204377,+!p1@TFAP2C!1.22!19.91!TFAP2C;;chr6:10415484..10415508,-!p3@TFAP2A!1.17!13.72!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!1.14!58.75!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!1.11!74.79!SNAI2;;chr1:24645832..24645853,+!p1@GRHL3!1.09!11.21!GRHL3;;chr11:34642656..34642667,+!p2@EHF!1.04!9.86!EHF;;chr8:102504651..102504683,+!p1@GRHL2!1.03!9.66!GRHL2;;chr12:27485762..27485776,+!p3@ARNTL2!1.00!24.54!ARNTL2;;chr8:49833978..49833996,-!p1@SNAI2!0.96!171.23!SNAI2;;chr2:46524897..46524911,+!p2@EPAS1!0.95!22.80!EPAS1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.94!7.73!TFCP2L1;;chr11:65554528..65554546,+!p1@OVOL1!0.94!7.73!OVOL1;;chr1:209979449..209979460,-!p3@IRF6!0.94!7.73!IRF6;;chr1:209979375..209979386,-!p4@IRF6!0.93!7.54!IRF6;;chr19:45908292..45908374,-!p1@PPP1R13L!0.92!67.25!PPP1R13L;;chr16:67881588..67881612,-!p2@CENPT!0.92!10.24!CENPT;;chr15:83953373..83953386,-!p2@BNC1!0.92!7.34!BNC1;;chr5:72744594..72744609,-!p1@FOXD1!0.91!34.40!FOXD1;;chr11:65686732..65686756,+!p2@DRAP1!0.91!31.69!DRAP1;;chr5:2751785..2751808,-!p2@IRX2!0.91!7.15!IRX2;;chr4:111544219..111544240,-!p1@PITX2!0.91!7.15!PITX2;;chr9:100615499..100615519,+!p1@FOXE1!0.89!6.76!FOXE1;;chr2:70314240..70314256,+!p4@PCBP1!0.88!14.11!PCBP1;;chr1:201979743..201979762,+!p1@ELF3!0.88!6.57!ELF3;;chr1:2461692..2461710,-!p1@HES5!0.87!6.38!HES5;;chr6:10412576..10412599,-!p5@TFAP2A!0.87!6.38!TFAP2A;;chr14:37131058..37131139,+!p1@PAX9!0.86!6.18!PAX9;;chr12:66218255..66218304,+!p3@HMGA2!0.85!17.01!HMGA2;;chr6:28321971..28321995,-!p1@ZNF323!0.84!5.99!ZNF323;;chr1:24645921..24645973,+!p2@GRHL3!0.81!5.41!GRHL3;;chr1:158979792..158979814,+!p2@IFI16!0.80!55.66!IFI16;;chr17:3571863..3571881,-!p1@TAX1BP3!0.79!404.11!TAX1BP3;;chr13:73633131..73633149,+!p1@KLF5!0.79!60.30!KLF5;;chr11:34645791..34645836,+!p3@EHF!0.79!5.22!EHF;;chr17:80797886..80797906,-!p1@ZNF750!0.79!5.22!ZNF750;;chr6:10419768..10419819,-!p6@TFAP2A!0.79!5.22!TFAP2A;;chr17:41622731..41622764,-!p5@ETV4!0.78!5.02!ETV4;;chr12:66218904..66218913,+!p11@HMGA2!0.78!5.02!HMGA2;;chr1:24646263..24646277,+!p4@GRHL3!0.78!5.02!GRHL3;;chr17:70117153..70117174,+!p1@SOX9!0.77!55.66!SOX9;;chr12:27485823..27485868,+!p2@ARNTL2!0.77!21.65!ARNTL2;;chr6:1312325..1312340,+!p1@FOXQ1!0.75!7.92!FOXQ1;;chr16:79634624..79634642,-!p1@MAF!0.74!19.52!MAF;;chr12:66218003..66218018,+!p9@HMGA2!0.74!5.60!HMGA2;;chr14:21566731..21566836,-!p1@ZNF219!0.73!52.37!ZNF219;;chr17:41623692..41623715,-!p1@ETV4!0.73!20.49!ETV4;;chr12:27485889..27485900,+!p4@ARNTL2!0.72!5.22!ARNTL2;;chr5:3595934..3595957,+!p2@IRX1!0.72!4.25!IRX1;;chr2:208030647..208030689,-!p1@KLF7!0.71!39.04!KLF7;;chr2:70142232..70142251,+!p1@MXD1!0.71!25.90!MXD1;;chr12:48298765..48298783,-!p2@VDR!0.71!9.28!VDR;;chr11:65667846..65667868,-!p1@FOSL1!0.70!119.82!FOSL1;;chr19:42636586..42636607,-!p1@POU2F2!0.70!12.18!POU2F2;;chr12:66218183..66218209,+!p4@HMGA2!0.70!8.31!HMGA2;;chr19:57792157..57792170,+!p6@ZNF460!0.70!6.18!ZNF460;;chr6:29648890..29648944,-!p1@ZFP57!0.70!4.06!ZFP57;;chr6:28321909..28321965,-!p3@ZNF323!0.69!3.87!ZNF323;;chr3:141121847..141121868,+!p5@ZBTB38!0.67!5.99!ZBTB38;;chr3:138665937..138665968,-!p1@FOXL2!0.67!3.67!FOXL2;;chr16:86612320..86612394,+!p1@FOXL1!0.67!3.67!FOXL1;;chr16:8962544..8962584,-!p2@CARHSP1!0.66!9.08!CARHSP1;;chr12:66218573..66218596,+!p7@HMGA2!0.66!5.60!HMGA2;;chr17:41622925..41622976,-!p3@ETV4!0.65!5.60!ETV4;;chr12:66218212..66218244,+!p5@HMGA2!0.65!5.41!HMGA2;;chr10:64018918..64018936,+!p2@ZNF365!0.65!3.48!ZNF365;;chr12:66218923..66218934,+!p14@HMGA2!0.65!3.48!HMGA2;;chr16:31076332..31076388,-!p3@ZNF668!0.65!3.48!ZNF668;;chr12:77459306..77459365,-!p1@E2F7!0.64!49.86!E2F7;;chr15:101069102..101069112,-!p2@CERS3!0.63!3.29!CERS3;;chr1:201979703..201979721,+!p2@ELF3!0.63!3.29!ELF3;;chr1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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002251;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002621;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001828;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003350;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004807;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911
 |ffid_belonging_in_development=CL:0000223
 |fonse_cell_line=
@@ Line 40: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Gingival%2520epithelial%2520cells%252c%2520donor1%2520%2528GEA11%2529.CNhs11061.11221-116B6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11221-116B6
 |is_a=EFO:0002091;;FF:0000254
 |is_obsolete=
 |library_id=CNhs11061
-|library_ids=CNhs11061
+|library_id_phase_based=2:CNhs11061
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11221
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11221
 |name=Gingival epithelial cells, donor1 (GEA11)
 |namespace=FANTOM5
@@ Line 50: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11061,LSID723,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11221-116B6;search_select_hide=table117:FF:11221-116B6
 }}

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Latest revision as of 16:25, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0