FFCP PHASE1:Mm9::chr4:133428963..133428976,-: Difference between revisions
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{{FFCP|EntrezGene=20111|HGNC=|UniProt=F6Q8A4|association_with_transcript=-9bp_to_ENSMUST00000137486_5end|description=CAGE_peak_5_at_Rps6ka1_5end|id=chr4:133428963..133428976,-|ontology_enrichment_celltype=CL:0002031!4.24e-14!25;CL:0000988!8.24e-14!32;CL:0002032!8.24e-14!32;CL:0000037!8.24e-14!32;CL:0000566!8.24e-14!32;CL:0000837!8.24e-14!32;CL:0000738!9.51e-10!17;CL:0002087!9.51e-10!17;CL:0002320!1.29e-08!46;CL:0000134!1.29e-08!46;CL:0000763!5.63e-08!16;CL:0000839!7.71e-08!13;CL:0000049!1.09e-07!19;CL:0000838!1.46e-07!12;CL:0000542!2.14e-07!13;CL:0000051!2.14e-07!13;CL:0000084!4.77e-07!11;CL:0000827!4.77e-07!11|ontology_enrichment_celltype_v019_2=CL:0002031,3.41e-20,25;CL:0000988,1.15e-15,32;CL:0002032,1.15e-15,32;CL:0000037,1.15e-15,32;CL:0000837,1.15e-15,32;CL:0000839,9.61e-14,13;CL:0002320,9.80e-13,46;CL:0000134,9.80e-13,46;CL:0000738,4.16e-11,17;CL:0002087,4.16e-11,17;CL:0000763,1.55e-10,16;CL:0000219,8.85e-10,54;CL:0000049,1.29e-09,19;CL:0000050,1.81e-09,9;CL:0000553,2.57e-09,6;CL:0000556,2.57e-09,6;CL:0000791,4.58e-09,9;CL:0000789,4.58e-09,9;CL:0002420,4.58e-09,9;CL:0002419,4.58e-09,9;CL:0000790,4.58e-09,9;CL:0000624,5.28e-08,8;CL:0000838,5.68e-08,12;CL:0000542,3.37e-07,13;CL:0000051,3.37e-07,13;CL:0000084,4.29e-07,11;CL:0000827,4.29e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!4.42e-23!48;UBERON:0002390!1.75e-21!45;UBERON:0003061!1.75e-21!45;UBERON:0002405!5.88e-21!70;UBERON:0004177!3.64e-12!29;UBERON:0005057!9.73e-11!51;UBERON:0002371!3.86e-10!16;UBERON:0001474!4.23e-10!22;UBERON:0004765!4.23e-10!22;UBERON:0001434!4.23e-10!22;UBERON:0002384!1.29e-08!46;UBERON:0003408!1.42e-08!24;UBERON:0003081!1.78e-08!88;UBERON:0002370!2.50e-08!23;UBERON:0000974!2.50e-08!23;UBERON:0004807!2.50e-08!23;UBERON:0005058!2.50e-08!23;UBERON:0003351!2.50e-08!23;UBERON:0009113!2.50e-08!23;UBERON:0003295!2.50e-08!23;UBERON:0009722!2.50e-08!23;UBERON:0005562!2.50e-08!23;UBERON:0007690!2.50e-08!23;UBERON:0006562!1.25e-07!24;UBERON:0001557!1.25e-07!24;UBERON:0001042!1.25e-07!24;UBERON:0008814!1.25e-07!24;UBERON:0009145!1.25e-07!24;UBERON:0002204!6.69e-07!32|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.83e-36,48;UBERON:0002405,2.83e-36,48;UBERON:0002390,2.17e-33,45;UBERON:0003061,2.17e-33,45;UBERON:0004177,4.42e-20,29;UBERON:0005057,4.42e-20,29;UBERON:0003081,9.24e-17,87;UBERON:0000077,2.03e-15,35;UBERON:0001474,5.98e-15,22;UBERON:0004765,5.98e-15,22;UBERON:0001434,5.98e-15,22;UBERON:0002371,1.95e-13,16;UBERON:0002370,3.82e-13,23;UBERON:0000974,3.82e-13,23;UBERON:0004807,3.82e-13,23;UBERON:0005058,3.82e-13,23;UBERON:0003351,3.82e-13,23;UBERON:0009113,3.82e-13,23;UBERON:0003295,3.82e-13,23;UBERON:0009722,3.82e-13,23;UBERON:0005562,3.82e-13,23;UBERON:0007690,3.82e-13,23;UBERON:0002384,9.80e-13,46;UBERON:0002204,1.41e-12,32;UBERON:0006562,2.15e-12,24;UBERON:0003408,2.15e-12,24;UBERON:0001557,2.15e-12,24;UBERON:0001042,2.15e-12,24;UBERON:0008814,2.15e-12,24;UBERON:0009145,2.15e-12,24;UBERON:0001041,7.04e-12,80;UBERON:0000926,3.29e-11,120;UBERON:0004120,3.29e-11,120;UBERON:0006603,3.29e-11,120;UBERON:0000072,1.75e-10,27;UBERON:0003929,3.25e-10,55;UBERON:0000490,7.88e-10,66;UBERON:0002106,6.73e-09,6;UBERON:0004457,6.73e-09,6;UBERON:0000042,6.73e-09,6;UBERON:0004854,6.73e-09,6;UBERON:0009034,6.73e-09,6;UBERON:0002095,6.73e-09,6;UBERON:0004782,6.73e-09,6;UBERON:0003281,6.73e-09,6;UBERON:0009664,6.73e-09,6;UBERON:0002296,6.73e-09,6;UBERON:0005602,6.73e-09,6;UBERON:0001179,6.73e-09,6;UBERON:0006293,6.73e-09,6;UBERON:0005911,9.02e-09,69;UBERON:0002368,9.12e-09,60;UBERON:0000065,1.07e-07,41;UBERON:0002530,1.47e-07,65;UBERON:0001004,2.15e-07,42;UBERON:0007811,9.75e-07,36|phase1_expression=0,0,0,0,0,0,0,10.8463591690924,1.40788722151667,0.936258105287974,3.08192342805909,3.03134204182278,7.36163138704185,11.1023911072127,7.66152452176024,8.09901069559304,17.4890469532037,7.88655413395594,5.48457734422955,4.2438965179803,0,0.992909512008853,0.522399578277871,1.11994695955385,1.14704640533585,0,0,0,0.570070258369122,0.252030129759931,0,3.17515336729816,1.23012957516914,0,0,0,0,4.18531630736908,4.6880120671428,1.0470474879476,6.47054636834116,1.36609096991689,3.88408282424923,0,0,0,0,0,0,0,0,0,3.02008690903925,4.35217285206807,4.03312558970957,0,0,0,0,0,0,0,0,7.19919773825119,8.89979726310277,5.6838409195688,2.69640099466564,1.15265491596466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0,0,0.227178579999552,0.151143120213571,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.45673551887624,6.21450920753212,0.148442139064825,0.520455980298408,0.608930956624282,0,0,0.470354828542819,0.251333182659351,0,0.578397427679647,3.5384422077995,1.13236794963186,3.09178125844551,2.42437626567611,0,0,0,0.510914110417183,0.599075622529601,0,1.01656181658452,0,0,0.125654352112864,0,0,0,0,0,2.36373244159177,0,0,0,0.229902104433473,0,0.452114453507145,0,0,0.0937017245597288,0,0,0,0,0.43839146485515,0,0,0,0.199034266818493,0.702213187313235,0.257347907114715,0.284163499395593,0,0.2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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20111 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=F6Q8A4 | |||
|association_with_transcript=-9bp_to_ENSMUST00000137486_5end | |||
|cluster_id=chr4:133428963..133428976,- | |||
|description=CAGE_peak_5_at_Rps6ka1_5end | |||
|id=chr4:133428963..133428976,- | |||
|ontology_enrichment_celltype=CL:0002031!4.24e-14!25;CL:0000988!8.24e-14!32;CL:0002032!8.24e-14!32;CL:0000037!8.24e-14!32;CL:0000566!8.24e-14!32;CL:0000837!8.24e-14!32;CL:0000738!9.51e-10!17;CL:0002087!9.51e-10!17;CL:0002320!1.29e-08!46;CL:0000134!1.29e-08!46;CL:0000763!5.63e-08!16;CL:0000839!7.71e-08!13;CL:0000049!1.09e-07!19;CL:0000838!1.46e-07!12;CL:0000542!2.14e-07!13;CL:0000051!2.14e-07!13;CL:0000084!4.77e-07!11;CL:0000827!4.77e-07!11 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,3.41e-20,25;CL:0000988,1.15e-15,32;CL:0002032,1.15e-15,32;CL:0000037,1.15e-15,32;CL:0000837,1.15e-15,32;CL:0000839,9.61e-14,13;CL:0002320,9.80e-13,46;CL:0000134,9.80e-13,46;CL:0000738,4.16e-11,17;CL:0002087,4.16e-11,17;CL:0000763,1.55e-10,16;CL:0000219,8.85e-10,54;CL:0000049,1.29e-09,19;CL:0000050,1.81e-09,9;CL:0000553,2.57e-09,6;CL:0000556,2.57e-09,6;CL:0000791,4.58e-09,9;CL:0000789,4.58e-09,9;CL:0002420,4.58e-09,9;CL:0002419,4.58e-09,9;CL:0000790,4.58e-09,9;CL:0000624,5.28e-08,8;CL:0000838,5.68e-08,12;CL:0000542,3.37e-07,13;CL:0000051,3.37e-07,13;CL:0000084,4.29e-07,11;CL:0000827,4.29e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!4.42e-23!48;UBERON:0002390!1.75e-21!45;UBERON:0003061!1.75e-21!45;UBERON:0002405!5.88e-21!70;UBERON:0004177!3.64e-12!29;UBERON:0005057!9.73e-11!51;UBERON:0002371!3.86e-10!16;UBERON:0001474!4.23e-10!22;UBERON:0004765!4.23e-10!22;UBERON:0001434!4.23e-10!22;UBERON:0002384!1.29e-08!46;UBERON:0003408!1.42e-08!24;UBERON:0003081!1.78e-08!88;UBERON:0002370!2.50e-08!23;UBERON:0000974!2.50e-08!23;UBERON:0004807!2.50e-08!23;UBERON:0005058!2.50e-08!23;UBERON:0003351!2.50e-08!23;UBERON:0009113!2.50e-08!23;UBERON:0003295!2.50e-08!23;UBERON:0009722!2.50e-08!23;UBERON:0005562!2.50e-08!23;UBERON:0007690!2.50e-08!23;UBERON:0006562!1.25e-07!24;UBERON:0001557!1.25e-07!24;UBERON:0001042!1.25e-07!24;UBERON:0008814!1.25e-07!24;UBERON:0009145!1.25e-07!24;UBERON:0002204!6.69e-07!32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,2.83e-36,48;UBERON:0002405,2.83e-36,48;UBERON:0002390,2.17e-33,45;UBERON:0003061,2.17e-33,45;UBERON:0004177,4.42e-20,29;UBERON:0005057,4.42e-20,29;UBERON:0003081,9.24e-17,87;UBERON:0000077,2.03e-15,35;UBERON:0001474,5.98e-15,22;UBERON:0004765,5.98e-15,22;UBERON:0001434,5.98e-15,22;UBERON:0002371,1.95e-13,16;UBERON:0002370,3.82e-13,23;UBERON:0000974,3.82e-13,23;UBERON:0004807,3.82e-13,23;UBERON:0005058,3.82e-13,23;UBERON:0003351,3.82e-13,23;UBERON:0009113,3.82e-13,23;UBERON:0003295,3.82e-13,23;UBERON:0009722,3.82e-13,23;UBERON:0005562,3.82e-13,23;UBERON:0007690,3.82e-13,23;UBERON:0002384,9.80e-13,46;UBERON:0002204,1.41e-12,32;UBERON:0006562,2.15e-12,24;UBERON:0003408,2.15e-12,24;UBERON:0001557,2.15e-12,24;UBERON:0001042,2.15e-12,24;UBERON:0008814,2.15e-12,24;UBERON:0009145,2.15e-12,24;UBERON:0001041,7.04e-12,80;UBERON:0000926,3.29e-11,120;UBERON:0004120,3.29e-11,120;UBERON:0006603,3.29e-11,120;UBERON:0000072,1.75e-10,27;UBERON:0003929,3.25e-10,55;UBERON:0000490,7.88e-10,66;UBERON:0002106,6.73e-09,6;UBERON:0004457,6.73e-09,6;UBERON:0000042,6.73e-09,6;UBERON:0004854,6.73e-09,6;UBERON:0009034,6.73e-09,6;UBERON:0002095,6.73e-09,6;UBERON:0004782,6.73e-09,6;UBERON:0003281,6.73e-09,6;UBERON:0009664,6.73e-09,6;UBERON:0002296,6.73e-09,6;UBERON:0005602,6.73e-09,6;UBERON:0001179,6.73e-09,6;UBERON:0006293,6.73e-09,6;UBERON:0005911,9.02e-09,69;UBERON:0002368,9.12e-09,60;UBERON:0000065,1.07e-07,41;UBERON:0002530,1.47e-07,65;UBERON:0001004,2.15e-07,42;UBERON:0007811,9.75e-07,36 | |||
|phase1_expression=0,0,0,0,0,0,0,10.8463591690924,1.40788722151667,0.936258105287974,3.08192342805909,3.03134204182278,7.36163138704185,11.1023911072127,7.66152452176024,8.09901069559304,17.4890469532037,7.88655413395594,5.48457734422955,4.2438965179803,0,0.992909512008853,0.522399578277871,1.11994695955385,1.14704640533585,0,0,0,0.570070258369122,0.252030129759931,0,3.17515336729816,1.23012957516914,0,0,0,0,4.18531630736908,4.6880120671428,1.0470474879476,6.47054636834116,1.36609096991689,3.88408282424923,0,0,0,0,0,0,0,0,0,3.02008690903925,4.35217285206807,4.03312558970957,0,0,0,0,0,0,0,0,7.19919773825119,8.89979726310277,5.6838409195688,2.69640099466564,1.15265491596466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0,0,0.227178579999552,0.151143120213571,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.45673551887624,6.21450920753212,0.148442139064825,0.520455980298408,0.608930956624282,0,0,0.470354828542819,0.251333182659351,0,0.578397427679647,3.5384422077995,1.13236794963186,3.09178125844551,2.42437626567611,0,0,0,0.510914110417183,0.599075622529601,0,1.01656181658452,0,0,0.125654352112864,0,0,0,0,0,2.36373244159177,0,0,0,0.229902104433473,0,0.452114453507145,0,0,0.0937017245597288,0,0,0,0,0.43839146485515,0,0,0,0.199034266818493,0.702213187313235,0.257347907114715,0.284163499395593,0,0.234526059981096,0,0,0,0,0,0,0,0,0.164167464079095,0,0.146199987425332,0,0.134206418760372,0,0,0.991256348951394,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0.199141273254367,0.379335801906163,0,0,0,0,0,0,0.147610147979602,0.156998727841375,0,0,5.33904338291501,3.93117990226406,6.52100125916076,8.72298521970563,11.576503668116,5.34714288740982,4.31544206176216,2.59416362840057,2.47105271869273,0,0.744281895337007,0,0.505157755894224,0,0,1.10851914099963,0,0,0.169745085775188,0.234690248288502,0.167506257441816,0.238043640886014,0.195133647857799,0.157635144106191,0.221464689648775,0.159454768657487,0.655453258862952,1.55416483679306,1.3018415272336,7.53956419696361,13.053736411649,0.491764273019036,0,0.160550589987792,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0.178065603667255,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0,0,0.178368817602071,0,0,0.469343416127421,0,0,0.49465875882444,0.161464426695906,0.0603129249281559,0,0,0.291480836629851,0,9.3978984438819,2.06386867963222,4.8150577116125,7.53473828018764,10.1153728513559,8.46479240864134,0.339956859987711,0.559805809294632,0.414599921413271,0.954670618015114,0.158167996790568,0,0,0,0,0,0,0,0.129614973291793,0.621339313086926,0.56369293868419,0.299033092087958,0.496375471371293,0,0.129159823477731,0,0,0,0,0,0,3.16011120628178,1.62180172232131,1.33524244314275,1.29920822977795,2.14832034800978,0.39736270956253,2.52410443991935,1.77227432609493,2.1202954489111,2.81965184623499,2.52065462842101,3.8983152295901,3.75226182397285,3.97381467417334,0,0,0,0,0,0.93841237725591,0.183151624267265,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512200817262403,2.43106717068294,1.67690530102386,0.551530525350042,0,0.618105171716683,0.320919209591815,0.758091635291392,0.25347929989024,0.377252682772152,0.655490552289177,0.320125762024346,0.516919220600519,0.952587382566147,0.115884325944855,0.578727661391115,0.412085900803307,0.735994600671987,0.685738504770831,0.70990322463735,0.476872379894642,0.726732083161643,0.376437521661322,0.507687647350059,0.365855945745545,0.263069711437843,0.679020569229309,0,0.949080144993393,0.197008964751127,0,0.77468420592983,0.964533054905707,0,0.467863216890817,0.429742108096597,0,0.220591419119515,0.695603506861264 | |||
|short_description=p5@Rps6ka1 | |||
}} |
Latest revision as of 11:46, 26 September 2015
Short description: | p5@Rps6ka1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Rps6ka1_5end |
Coexpression cluster: | NA |
Association with transcript: | -9bp_to_ENSMUST00000137486_5end |
EntrezGene: | Rps6ka1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 3.41e-20 | 25 |
hematopoietic cell | 1.15e-15 | 32 |
hematopoietic oligopotent progenitor cell | 1.15e-15 | 32 |
hematopoietic stem cell | 1.15e-15 | 32 |
hematopoietic multipotent progenitor cell | 1.15e-15 | 32 |
myeloid lineage restricted progenitor cell | 9.61e-14 | 13 |
connective tissue cell | 9.80e-13 | 46 |
mesenchymal cell | 9.80e-13 | 46 |
leukocyte | 4.16e-11 | 17 |
nongranular leukocyte | 4.16e-11 | 17 |
myeloid cell | 1.55e-10 | 16 |
motile cell | 8.85e-10 | 54 |
common myeloid progenitor | 1.29e-09 | 19 |
megakaryocyte-erythroid progenitor cell | 1.81e-09 | 9 |
megakaryocyte progenitor cell | 2.57e-09 | 6 |
megakaryocyte | 2.57e-09 | 6 |
mature alpha-beta T cell | 4.58e-09 | 9 |
alpha-beta T cell | 4.58e-09 | 9 |
immature T cell | 4.58e-09 | 9 |
mature T cell | 4.58e-09 | 9 |
immature alpha-beta T cell | 4.58e-09 | 9 |
CD4-positive, alpha-beta T cell | 5.28e-08 | 8 |
lymphoid lineage restricted progenitor cell | 5.68e-08 | 12 |
lymphocyte | 3.37e-07 | 13 |
common lymphoid progenitor | 3.37e-07 | 13 |
T cell | 4.29e-07 | 11 |
pro-T cell | 4.29e-07 | 11 |