FFCP PHASE1:Mm9::chr18:56628893..56628932,+: Difference between revisions
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{{FFCP|EntrezGene=107022|HGNC=|MCL_coexpression_id=170|UniProt=Q8CAP5|association_with_transcript=0bp_to_uc008eym.1_5end|description=CAGE_peak_2_at_Gramd3_5end|id=chr18:56628893..56628932,+|ontology_enrichment_celltype=CL:0000791!9.85e-08!9;CL:0000789!9.85e-08!9;CL:0002420!9.85e-08!9;CL:0002419!9.85e-08!9;CL:0000790!9.85e-08!9;CL:0000624!5.49e-07!8|ontology_enrichment_celltype_v019_2=CL:0000791,2.92e-09,9;CL:0000789,2.92e-09,9;CL:0002420,2.92e-09,9;CL:0002419,2.92e-09,9;CL:0000790,2.92e-09,9;CL:0000624,2.47e-08,8;CL:0000542,7.62e-08,13;CL:0000051,7.62e-08,13;CL:0000838,1.06e-07,12;CL:0000084,6.85e-07,11;CL:0000827,6.85e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001007!3.17e-28!128;UBERON:0001555!3.17e-28!128;UBERON:0007026!3.17e-28!128;UBERON:0004119!3.43e-28!130;UBERON:0000925!3.43e-28!130;UBERON:0006595!3.43e-28!130;UBERON:0004921!4.34e-27!126;UBERON:0004185!4.34e-27!126;UBERON:0005409!6.58e-22!59;UBERON:0000160!2.01e-16!43;UBERON:0001041!2.94e-13!92;UBERON:0000077!3.92e-13!97;UBERON:0001004!1.80e-10!42;UBERON:0004177!2.99e-10!29;UBERON:0000065!3.79e-10!41;UBERON:0000072!3.34e-09!27;UBERON:0003408!1.01e-08!24;UBERON:0002370!2.09e-08!23;UBERON:0000974!2.09e-08!23;UBERON:0004807!2.09e-08!23;UBERON:0005058!2.09e-08!23;UBERON:0003351!2.09e-08!23;UBERON:0009113!2.09e-08!23;UBERON:0003295!2.09e-08!23;UBERON:0009722!2.09e-08!23;UBERON:0005562!2.09e-08!23;UBERON:0007690!2.09e-08!23;UBERON:0004923!2.16e-08!24;UBERON:0006562!2.25e-08!24;UBERON:0001557!2.25e-08!24;UBERON:0001042!2.25e-08!24;UBERON:0008814!2.25e-08!24;UBERON:0009145!2.25e-08!24;UBERON:0002193!6.30e-08!48;UBERON:0003104!2.23e-07!131;UBERON:0009142!2.23e-07!131;UBERON:0000344!2.30e-07!15;UBERON:0000063!3.13e-07!35;UBERON:0005911!3.41e-07!69|ontology_enrichment_uberon_v019_2=UBERON:0001007,4.01e-25,116;UBERON:0001555,4.01e-25,116;UBERON:0007026,4.01e-25,116;UBERON:0004119,3.55e-24,118;UBERON:0000925,3.55e-24,118;UBERON:0006595,3.55e-24,118;UBERON:0004921,6.68e-24,114;UBERON:0005409,5.00e-21,47;UBERON:0000160,7.31e-16,31;UBERON:0004177,2.87e-12,29;UBERON:0005057,2.87e-12,29;UBERON:0002193,2.14e-11,48;UBERON:0002405,2.14e-11,48;UBERON:0003408,5.69e-11,24;UBERON:0000072,7.64e-11,27;UBERON:0002370,1.40e-10,23;UBERON:0000974,1.40e-10,23;UBERON:0004807,1.40e-10,23;UBERON:0005058,1.40e-10,23;UBERON:0003351,1.40e-10,23;UBERON:0009113,1.40e-10,23;UBERON:0003295,1.40e-10,23;UBERON:0009722,1.40e-10,23;UBERON:0005562,1.40e-10,23;UBERON:0007690,1.40e-10,23;UBERON:0000077,3.30e-10,35;UBERON:0001004,4.24e-10,42;UBERON:0006562,8.20e-10,24;UBERON:0001557,8.20e-10,24;UBERON:0001042,8.20e-10,24;UBERON:0008814,8.20e-10,24;UBERON:0009145,8.20e-10,24;UBERON:0002390,9.24e-10,45;UBERON:0003061,9.24e-10,45;UBERON:0000065,1.01e-09,41;UBERON:0001041,1.20e-09,80;UBERON:0000344,8.38e-09,15;UBERON:0004923,3.67e-08,24;UBERON:0001242,9.06e-08,13;UBERON:0001262,9.06e-08,13;UBERON:0004786,9.06e-08,13;UBERON:0005911,1.00e-07,69;UBERON:0003929,1.82e-07,55|phase1_expression=0,21.9854506812797,15.9249733786338,9.67885476181856,11.0197060588196,14.7733759282463,13.783145795136,140.615299227877,196.259478679423,217.914074005776,32.5314139628459,22.8148374726662,333.841423365851,330.536541546229,7.32841475994458,21.2599030759317,3.49780939064073,99.8437753358822,96.2543323912286,94.2145026991627,4.59233766815777,0.0992909512008853,0,12.9593862462659,8.71755268055246,18.9496548157957,10.7690499039769,15.2984575206981,9.88121781173144,4.03248207615889,9.5344119581781,0,0,0,8.66554859253824,11.802659820453,8.5751129630195,0,0,1.0470474879476,0.588231488031014,0,0.485510353031154,0,0,0,0,0,0,0,0,0,96.6427810892561,620.909993561711,661.768690511512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,3.76823835312181,1.72084775396277,0,0,0,0,3.7919993435573,0,0,0,0,0,0,0,5.84525810730278,6.08063677140237,5.56076889516262,5.709193985953,125.843811452525,2.52351636410202,0,0,0,0.301445281105245,0.117588707135705,0.251333182659351,0.247194967734374,1.87979163995885,2.65383165584962,0.161766849947409,1.54589062922275,2.42437626567611,52.1896931410742,0,0.209446706813455,8.17462576667492,0.11981512450592,0,0,0.149790639404823,0,0,0,0,0,0,0.203678727700633,2.11491850037158,0.505445516867349,1.05220927943237,0,0,0,0,0.204109497453984,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467061369468678,0,0.492502392237286,0.0810688095458557,0.438599962275997,0.878200461164203,0.402619256281115,0.210289948564127,0.102904612379284,2.97376904685418,2.90895623329899,3.41261200856374,5.80591679651096,9.665059599157,6.6555563125703,7.78323153457046,7.03834816616469,8.54152310780121,7.08205505313247,8.29406189040889,10.9426059622633,11.5028811400281,7.19055526923377,16.4264917904768,13.7407478545513,0.189667900953082,0.114248512609729,0,0,0,0.0701358198903186,0.189709611372772,0.590440591918409,0.784993639206874,0.123397163921801,0.296452627087149,0,0,0,0,0,0,0.287696137450811,0.648540907100142,0,1.43768206527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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=107022 | |||
|HGNC= | |||
|MCL_coexpression_id=170 | |||
|TSSclassifier=NA | |||
|UniProt=Q8CAP5 | |||
|association_with_transcript=0bp_to_uc008eym.1_5end | |||
|cluster_id=chr18:56628893..56628932,+ | |||
|description=CAGE_peak_2_at_Gramd3_5end | |||
|id=chr18:56628893..56628932,+ | |||
|ontology_enrichment_celltype=CL:0000791!9.85e-08!9;CL:0000789!9.85e-08!9;CL:0002420!9.85e-08!9;CL:0002419!9.85e-08!9;CL:0000790!9.85e-08!9;CL:0000624!5.49e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.92e-09,9;CL:0000789,2.92e-09,9;CL:0002420,2.92e-09,9;CL:0002419,2.92e-09,9;CL:0000790,2.92e-09,9;CL:0000624,2.47e-08,8;CL:0000542,7.62e-08,13;CL:0000051,7.62e-08,13;CL:0000838,1.06e-07,12;CL:0000084,6.85e-07,11;CL:0000827,6.85e-07,11 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001007!3.17e-28!128;UBERON:0001555!3.17e-28!128;UBERON:0007026!3.17e-28!128;UBERON:0004119!3.43e-28!130;UBERON:0000925!3.43e-28!130;UBERON:0006595!3.43e-28!130;UBERON:0004921!4.34e-27!126;UBERON:0004185!4.34e-27!126;UBERON:0005409!6.58e-22!59;UBERON:0000160!2.01e-16!43;UBERON:0001041!2.94e-13!92;UBERON:0000077!3.92e-13!97;UBERON:0001004!1.80e-10!42;UBERON:0004177!2.99e-10!29;UBERON:0000065!3.79e-10!41;UBERON:0000072!3.34e-09!27;UBERON:0003408!1.01e-08!24;UBERON:0002370!2.09e-08!23;UBERON:0000974!2.09e-08!23;UBERON:0004807!2.09e-08!23;UBERON:0005058!2.09e-08!23;UBERON:0003351!2.09e-08!23;UBERON:0009113!2.09e-08!23;UBERON:0003295!2.09e-08!23;UBERON:0009722!2.09e-08!23;UBERON:0005562!2.09e-08!23;UBERON:0007690!2.09e-08!23;UBERON:0004923!2.16e-08!24;UBERON:0006562!2.25e-08!24;UBERON:0001557!2.25e-08!24;UBERON:0001042!2.25e-08!24;UBERON:0008814!2.25e-08!24;UBERON:0009145!2.25e-08!24;UBERON:0002193!6.30e-08!48;UBERON:0003104!2.23e-07!131;UBERON:0009142!2.23e-07!131;UBERON:0000344!2.30e-07!15;UBERON:0000063!3.13e-07!35;UBERON:0005911!3.41e-07!69 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,4.01e-25,116;UBERON:0001555,4.01e-25,116;UBERON:0007026,4.01e-25,116;UBERON:0004119,3.55e-24,118;UBERON:0000925,3.55e-24,118;UBERON:0006595,3.55e-24,118;UBERON:0004921,6.68e-24,114;UBERON:0005409,5.00e-21,47;UBERON:0000160,7.31e-16,31;UBERON:0004177,2.87e-12,29;UBERON:0005057,2.87e-12,29;UBERON:0002193,2.14e-11,48;UBERON:0002405,2.14e-11,48;UBERON:0003408,5.69e-11,24;UBERON:0000072,7.64e-11,27;UBERON:0002370,1.40e-10,23;UBERON:0000974,1.40e-10,23;UBERON:0004807,1.40e-10,23;UBERON:0005058,1.40e-10,23;UBERON:0003351,1.40e-10,23;UBERON:0009113,1.40e-10,23;UBERON:0003295,1.40e-10,23;UBERON:0009722,1.40e-10,23;UBERON:0005562,1.40e-10,23;UBERON:0007690,1.40e-10,23;UBERON:0000077,3.30e-10,35;UBERON:0001004,4.24e-10,42;UBERON:0006562,8.20e-10,24;UBERON:0001557,8.20e-10,24;UBERON:0001042,8.20e-10,24;UBERON:0008814,8.20e-10,24;UBERON:0009145,8.20e-10,24;UBERON:0002390,9.24e-10,45;UBERON:0003061,9.24e-10,45;UBERON:0000065,1.01e-09,41;UBERON:0001041,1.20e-09,80;UBERON:0000344,8.38e-09,15;UBERON:0004923,3.67e-08,24;UBERON:0001242,9.06e-08,13;UBERON:0001262,9.06e-08,13;UBERON:0004786,9.06e-08,13;UBERON:0005911,1.00e-07,69;UBERON:0003929,1.82e-07,55 | |||
|phase1_expression=0,21.9854506812797,15.9249733786338,9.67885476181856,11.0197060588196,14.7733759282463,13.783145795136,140.615299227877,196.259478679423,217.914074005776,32.5314139628459,22.8148374726662,333.841423365851,330.536541546229,7.32841475994458,21.2599030759317,3.49780939064073,99.8437753358822,96.2543323912286,94.2145026991627,4.59233766815777,0.0992909512008853,0,12.9593862462659,8.71755268055246,18.9496548157957,10.7690499039769,15.2984575206981,9.88121781173144,4.03248207615889,9.5344119581781,0,0,0,8.66554859253824,11.802659820453,8.5751129630195,0,0,1.0470474879476,0.588231488031014,0,0.485510353031154,0,0,0,0,0,0,0,0,0,96.6427810892561,620.909993561711,661.768690511512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,3.76823835312181,1.72084775396277,0,0,0,0,3.7919993435573,0,0,0,0,0,0,0,5.84525810730278,6.08063677140237,5.56076889516262,5.709193985953,125.843811452525,2.52351636410202,0,0,0,0.301445281105245,0.117588707135705,0.251333182659351,0.247194967734374,1.87979163995885,2.65383165584962,0.161766849947409,1.54589062922275,2.42437626567611,52.1896931410742,0,0.209446706813455,8.17462576667492,0.11981512450592,0,0,0.149790639404823,0,0,0,0,0,0,0.203678727700633,2.11491850037158,0.505445516867349,1.05220927943237,0,0,0,0,0.204109497453984,0.12811372028485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.467061369468678,0,0.492502392237286,0.0810688095458557,0.438599962275997,0.878200461164203,0.402619256281115,0.210289948564127,0.102904612379284,2.97376904685418,2.90895623329899,3.41261200856374,5.80591679651096,9.665059599157,6.6555563125703,7.78323153457046,7.03834816616469,8.54152310780121,7.08205505313247,8.29406189040889,10.9426059622633,11.5028811400281,7.19055526923377,16.4264917904768,13.7407478545513,0.189667900953082,0.114248512609729,0,0,0,0.0701358198903186,0.189709611372772,0.590440591918409,0.784993639206874,0.123397163921801,0.296452627087149,0,0,0,0,0,0,0.287696137450811,0.648540907100142,0,1.43768206527355,1.48856379067401,2.80833905803104,1.01031551178845,0.358794827043824,0.482443521363367,14.2259956428286,0.189491411770485,0.325929952884052,0.509235257325564,0.234690248288502,1.67506257441816,0.714130922658041,0.585400943573396,3.15270288212382,2.6575762757853,3.98636921643718,7.53771247692395,6.38934432903814,4.77341893318988,0,0,3.93411418415229,1.93155722413313,0.160550589987792,0.117211686592203,0,0.504941854408746,0,0,0,0,0,0,0,0,0,0,4.40014264145633,1.24645922567079,0.81443479676788,40.9125904971888,6.63725691699814,3.8844901784797,4.23252979750651,3.58349651536206,2.06711325016541,5.22639751504677,5.42699415653264,9.81541069589265,9.26893183800275,7.26884543252377,6.32511651449993,6.18813259489121,0,0,0,0.214337035031592,0,0,0,0,0.23467170806371,0.847328283455281,0,2.96795255294664,0,1.32688434841943,4.65552141612232,5.0883678920969,8.45294426226567,0,27.1684700468586,0.619160603889667,2.77791791054568,5.65105371014073,18.8638034255015,21.7339264546196,0.339956859987711,0.139951452323658,0.552799895217695,20.0480829783174,0.474503990371703,2.64315307264903,3.45617090629764,2.92723614420256,4.36725127492355,11.5983337890946,11.6541372572724,13.8730649251536,92.8043208769237,6.83473244395618,0,0,0.330916980914195,0,0,0,0.117357238645754,0,0.104859344425711,0,0,31.917123183446,0.202725215290164,1.1298205288131,3.63778304337826,14.6801890447335,40.1336336658155,27.8853442886328,24.9595300925035,25.9483776366739,23.16686922312,28.432984208589,33.2331373322556,33.7703564157556,43.3613307093621,0.906921534460845,0,0,0,0.965947970160952,9.19644129710792,31.8683826225041,5.78794623513478,1.00314420807073,0,0,0,0,0,0,0.675022500231806,0,0,0,0.103787347584177,0,0.512200817262403,0.729320151204882,0.209613162627982,0.367687016900028,0.666740183404846,0.618105171716683,0.64183841918363,0.252697211763798,1.2673964994512,0.754505365544305,0.936415074698824,1.15245274328765,0.804096565378586,1.90517476513229,0.695305955669133,0.38581844092741,0.412085900803307,0.147198920134397,0,0.70990322463735,1.43061713968393,0.872078499793971,0.470546902076653,0.761531471025089,0.182927972872773,0.526139422875686,1.22223702461276,2.24456908663095,0.593175090620871,0.886540341380071,1.63692417267876,0.464810523557898,0.771626443924566,0.499621155875892,0.701794825336225,2.36358159453128,0,0.882365676478062,1.15933917810211 | |||
|short_description=p2@Gramd3 | |||
}} |
Latest revision as of 11:59, 1 October 2015
Short description: | p2@Gramd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gramd3_5end |
Coexpression cluster: | MCL_coexpression_mm9:170 |
Association with transcript: | 0bp_to_uc008eym.1_5end |
EntrezGene: | Gramd3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 2.92e-09 | 9 |
alpha-beta T cell | 2.92e-09 | 9 |
immature T cell | 2.92e-09 | 9 |
mature T cell | 2.92e-09 | 9 |
immature alpha-beta T cell | 2.92e-09 | 9 |
CD4-positive, alpha-beta T cell | 2.47e-08 | 8 |
lymphocyte | 7.62e-08 | 13 |
common lymphoid progenitor | 7.62e-08 | 13 |
lymphoid lineage restricted progenitor cell | 1.06e-07 | 12 |
T cell | 6.85e-07 | 11 |
pro-T cell | 6.85e-07 | 11 |