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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005633
|accession_numbers=CAGE;DRX007805;DRR008677;DRZ000102;DRZ001487;DRZ011452;DRZ012837
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr9:96717629..96717644,-!p1@BARX1!2.26!180.99!BARX1;;chr2:68592406..68592424,+!p1@PLEK!2.02!102.93!PLEK;;chr19:50922187..50922204,+!p1@SPIB!2.02!102.93!SPIB;;chr10:131762504..131762555,-!p1@EBF3!1.89!76.00!EBF3;;chr1:92949331..92949377,-!p2@GFI1!1.87!72.35!GFI1;;chr16:85932760..85932775,+!p1@IRF8!1.86!70.75!IRF8;;chr7:50344289..50344323,+!p1@IKZF1!1.82!65.28!IKZF1;;chr6:135502501..135502546,+!p1@MYB!1.79!72.35!MYB;;chr20:62680984..62680999,-!p1@SOX18!1.76!73.95!SOX18;;chr11:47400078..47400106,-!p1@SPI1!1.75!54.78!SPI1;;chr19:33793430..33793447,-!p1@CEBPA!1.73!210.66!CEBPA;;chr21:34442439..34442455,+!p1@OLIG1!1.67!45.65!OLIG1;;chr6:135502408..135502459,+!p2@MYB!1.64!49.53!MYB;;chr3:18486354..18486377,-!p2@SATB1!1.56!43.36!SATB1;;chr7:50344251..50344288,+!p3@IKZF1!1.54!34.01!IKZF1;;chr19:13213662..13213686,-!p1@LYL1!1.51!46.10!LYL1;;chr7:27205136..27205164,-!p1@HOXA9!1.47!28.76!HOXA9;;chr2:100759037..100759058,-!p2@AFF3!1.47!28.30!AFF3;;chr2:100759010..100759035,-!p1@AFF3!1.46!27.84!AFF3;;chr3:157824202..157824211,-!p3@SHOX2!1.41!24.88!SHOX2;;chr7:50343634..50343717,+!p2@IKZF1!1.39!23.74!IKZF1;;chr2:60780607..60780624,-!p2@BCL11A!1.33!60.71!BCL11A;;chr3:157824001..157824078,-!p2@SHOX2!1.33!20.31!SHOX2;;chr2:145277640..145277771,-!p1@ZEB2!1.32!258.13!ZEB2;;chr2:223163706..223163730,-!p1@PAX3!1.29!18.72!PAX3;;chr12:54778471..54778528,-!p1@ZNF385A!1.29!18.72!ZNF385A;;chrX:66764343..66764362,+!p4@AR!1.28!18.03!AR;;chr11:47400062..47400077,-!p2@SPI1!1.27!17.80!SPI1;;chr7:64126535..64126559,+!p2@ZNF107!1.26!36.06!ZNF107;;chr6:135502472..135502489,+!p3@MYB!1.26!17.35!MYB;;chr11:32457075..32457095,-!p1@WT1!1.26!17.12!WT1;;chr5:88178983..88179012,-!p1@MEF2C!1.23!120.74!MEF2C;;chr9:117150254..117150271,-!p1@AKNA!1.19!39.71!AKNA;;chr19:13213954..13214021,-!p4@LYL1!1.19!14.61!LYL1;;chr11:47399996..47400014,-!p4@SPI1!1.18!14.15!SPI1;;chr1:156470515..156470542,-!p2@MEF2D!1.16!70.30!MEF2D;;chr3:71631151..71631194,-!p15@FOXP1!1.14!14.38!FOXP1;;chr7:27205106..27205134,-!p2@HOXA9!1.14!12.78!HOXA9;;chr19:13213704..13213726,-!p3@LYL1!1.13!16.43!LYL1;;chr10:131762385..131762398,-!p4@EBF3!1.13!12.55!EBF3;;chr2:68592394..68592405,+!p2@PLEK!1.13!12.55!PLEK;;chr2:185463247..185463263,+!p1@ZNF804A!1.11!21.23!ZNF804A;;chrX:66763856..66763896,+!p1@AR!1.10!16.66!AR;;chr7:137620650..137620677,-!p3@CREB3L2!1.09!11.41!CREB3L2;;chr7:137620684..137620711,-!p4@CREB3L2!1.09!11.41!CREB3L2;;chr18:72922811..72922827,+!p1@TSHZ1!1.08!55.46!TSHZ1;;chr16:68119324..68119364,+!p1@NFATC3!1.07!48.16!NFATC3;;chr15:76629123..76629151,+!p1@ISL2!1.07!11.87!ISL2;;chr19:45579725..45579743,-!p1@ZNF296!1.06!47.24!ZNF296;;chr10:94449703..94449718,+!p1@HHEX!1.04!39.03!HHEX;;chr21:36260980..36261011,-!p1@RUNX1!1.02!277.76!RUNX1;;chr13:41593425..41593480,-!p1@ELF1!1.02!60.94!ELF1;;chr18:72922743..72922761,+!p3@TSHZ1!1.02!31.50!TSHZ1;;chr1:92951607..92951661,-!p1@GFI1!1.02!9.36!GFI1;;chr2:60780753..60780800,-!p1@BCL11A!1.01!45.88!BCL11A;;chr4:87857474..87857489,+!p7@AFF1!1.01!16.20!AFF1;;chr1:156470494..156470505,-!p3@MEF2D!1.01!13.47!MEF2D;;chr2:60778035..60778060,-!p4@BCL11A!1.00!10.73!BCL11A;;chr11:32457103..32457123,-!p3@WT1!1.00!8.90!WT1;;chrX:66763815..66763854,+!p2@AR!0.99!11.64!AR;;chr14:75988771..75988826,+!p1@BATF!0.98!11.64!BATF;;chr2:200320768..200320800,-!p4@SATB2!0.96!8.22!SATB2;;chr21:36421535..36421610,-!p2@RUNX1!0.95!28.99!RUNX1;;chr6:21593973..21593988,+!p1@SOX4!0.94!289.86!SOX4;;chr11:128563948..128564003,+!p1@FLI1!0.94!96.32!FLI1;;chr8:145669791..145669834,-!p1@TONSL!0.94!23.05!TONSL;;chr8:116673894..116673913,-!p12@TRPS1!0.94!7.76!TRPS1;;chr2:100758991..100759009,-!p3@AFF3!0.94!7.76!AFF3;;chr2:185463521..185463557,+!p3@ZNF804A!0.94!7.76!ZNF804A;;chr11:47399947..47399961,-!p3@SPI1!0.93!7.53!SPI1;;chr2:200323414..200323455,-!p1@SATB2!0.92!16.20!SATB2;;chr1:221052994..221053008,+!p6@HLX!0.92!8.67!HLX;;chr10:131762410..131762436,-!p2@EBF3!0.92!7.30!EBF3;;chr5:176738887..176738934,-!p1@MXD3!0.91!49.98!MXD3;;chr12:54694758..54694805,-!p1@NFE2!0.89!8.22!NFE2;;chr7:27213893..27213954,-!p1@HOXA10!0.89!6.85!HOXA10;;chr21:34442540..34442560,+!p2@OLIG1!0.89!6.85!OLIG1;;chr1:25256756..25256774,-!p1@RUNX3!0.88!12.78!RUNX3;;chr19:22817119..22817145,+!p1@ZNF492!0.88!11.41!ZNF492;;chr16:79634624..79634642,-!p1@MAF!0.87!26.48!MAF;;chr5:88179195..88179224,-!p3@MEF2C!0.87!10.50!MEF2C;;chr7:100076723..100076737,-!p3@TSC22D4!0.87!10.50!TSC22D4;;chr3:71631248..71631268,-!p26@FOXP1!0.87!6.39!FOXP1;;chr2:25475120..25475176,-!p2@DNMT3A!0.86!8.67!DNMT3A;;chr3:157823517..157823562,-!p1@SHOX2!0.85!6.62!SHOX2;;chr12:54380036..54380091,+!p4@HOXC10!0.84!5.93!HOXC10;;chr12:54380112..54380126,+!p5@HOXC10!0.84!5.93!HOXC10;;chr10:94449675..94449694,+!p2@HHEX!0.83!16.43!HHEX;;chr15:100106670..100106697,+!p4@MEF2A!0.83!9.81!MEF2A;;chrX:131623932..131623964,-!p7@MBNL3!0.83!8.44!MBNL3;;chr1:92952473..92952489,-!p3@GFI1!0.83!5.71!GFI1;;chr19:2867298..2867317,+!p2@ZNF556!0.83!5.71!ZNF556;;chr17:42295777..42295816,-!p7@UBTF!0.82!6.85!UBTF;;chr6:21597765..21597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|expression_enrichment_score=chr9:96717629..96717644,-!p1@BARX1!2.26!180.99!BARX1;;chr2:68592406..68592424,+!p1@PLEK!2.02!102.93!PLEK;;chr19:50922187..50922204,+!p1@SPIB!2.02!102.93!SPIB;;chr10:131762504..131762555,-!p1@EBF3!1.89!76.00!EBF3;;chr1:92949331..92949377,-!p2@GFI1!1.87!72.35!GFI1;;chr16:85932760..85932775,+!p1@IRF8!1.86!70.75!IRF8;;chr7:50344289..50344323,+!p1@IKZF1!1.82!65.28!IKZF1;;chr6:135502501..135502546,+!p1@MYB!1.79!72.35!MYB;;chr20:62680984..62680999,-!p1@SOX18!1.76!73.95!SOX18;;chr11:47400078..47400106,-!p1@SPI1!1.75!54.78!SPI1;;chr19:33793430..33793447,-!p1@CEBPA!1.73!210.66!CEBPA;;chr21:34442439..34442455,+!p1@OLIG1!1.67!45.65!OLIG1;;chr6:135502408..135502459,+!p2@MYB!1.64!49.53!MYB;;chr3:18486354..18486377,-!p2@SATB1!1.56!43.36!SATB1;;chr7:50344251..50344288,+!p3@IKZF1!1.54!34.01!IKZF1;;chr19:13213662..13213686,-!p1@LYL1!1.51!46.10!LYL1;;chr7:27205136..27205164,-!p1@HOXA9!1.47!28.76!HOXA9;;chr2:100759037..100759058,-!p2@AFF3!1.47!28.30!AFF3;;chr2:100759010..100759035,-!p1@AFF3!1.46!27.84!AFF3;;chr3:157824202..157824211,-!p3@SHOX2!1.41!24.88!SHOX2;;chr7:50343634..50343717,+!p2@IKZF1!1.39!23.74!IKZF1;;chr2:60780607..60780624,-!p2@BCL11A!1.33!60.71!BCL11A;;chr3:157824001..157824078,-!p2@SHOX2!1.33!20.31!SHOX2;;chr2:145277640..145277771,-!p1@ZEB2!1.32!258.13!ZEB2;;chr2:223163706..223163730,-!p1@PAX3!1.29!18.72!PAX3;;chr12:54778471..54778528,-!p1@ZNF385A!1.29!18.72!ZNF385A;;chrX:66764343..66764362,+!p4@AR!1.28!18.03!AR;;chr11:47400062..47400077,-!p2@SPI1!1.27!17.80!SPI1;;chr7:64126535..64126559,+!p2@ZNF107!1.26!36.06!ZNF107;;chr6:135502472..135502489,+!p3@MYB!1.26!17.35!MYB;;chr11:32457075..32457095,-!p1@WT1!1.26!17.12!WT1;;chr5:88178983..88179012,-!p1@MEF2C!1.23!120.74!MEF2C;;chr9:117150254..117150271,-!p1@AKNA!1.19!39.71!AKNA;;chr19:13213954..13214021,-!p4@LYL1!1.19!14.61!LYL1;;chr11:47399996..47400014,-!p4@SPI1!1.18!14.15!SPI1;;chr1:156470515..156470542,-!p2@MEF2D!1.16!70.30!MEF2D;;chr3:71631151..71631194,-!p15@FOXP1!1.14!14.38!FOXP1;;chr7:27205106..27205134,-!p2@HOXA9!1.14!12.78!HOXA9;;chr19:13213704..13213726,-!p3@LYL1!1.13!16.43!LYL1;;chr10:131762385..131762398,-!p4@EBF3!1.13!12.55!EBF3;;chr2:68592394..68592405,+!p2@PLEK!1.13!12.55!PLEK;;chr2:185463247..185463263,+!p1@ZNF804A!1.11!21.23!ZNF804A;;chrX:66763856..66763896,+!p1@AR!1.10!16.66!AR;;chr7:137620650..137620677,-!p3@CREB3L2!1.09!11.41!CREB3L2;;chr7:137620684..137620711,-!p4@CREB3L2!1.09!11.41!CREB3L2;;chr18:72922811..72922827,+!p1@TSHZ1!1.08!55.46!TSHZ1;;chr16:68119324..68119364,+!p1@NFATC3!1.07!48.16!NFATC3;;chr15:76629123..76629151,+!p1@ISL2!1.07!11.87!ISL2;;chr19:45579725..45579743,-!p1@ZNF296!1.06!47.24!ZNF296;;chr10:94449703..94449718,+!p1@HHEX!1.04!39.03!HHEX;;chr21:36260980..36261011,-!p1@RUNX1!1.02!277.76!RUNX1;;chr13:41593425..41593480,-!p1@ELF1!1.02!60.94!ELF1;;chr18:72922743..72922761,+!p3@TSHZ1!1.02!31.50!TSHZ1;;chr1:92951607..92951661,-!p1@GFI1!1.02!9.36!GFI1;;chr2:60780753..60780800,-!p1@BCL11A!1.01!45.88!BCL11A;;chr4:87857474..87857489,+!p7@AFF1!1.01!16.20!AFF1;;chr1:156470494..156470505,-!p3@MEF2D!1.01!13.47!MEF2D;;chr2:60778035..60778060,-!p4@BCL11A!1.00!10.73!BCL11A;;chr11:32457103..32457123,-!p3@WT1!1.00!8.90!WT1;;chrX:66763815..66763854,+!p2@AR!0.99!11.64!AR;;chr14:75988771..75988826,+!p1@BATF!0.98!11.64!BATF;;chr2:200320768..200320800,-!p4@SATB2!0.96!8.22!SATB2;;chr21:36421535..36421610,-!p2@RUNX1!0.95!28.99!RUNX1;;chr6:21593973..21593988,+!p1@SOX4!0.94!289.86!SOX4;;chr11:128563948..128564003,+!p1@FLI1!0.94!96.32!FLI1;;chr8:145669791..145669834,-!p1@TONSL!0.94!23.05!TONSL;;chr8:116673894..116673913,-!p12@TRPS1!0.94!7.76!TRPS1;;chr2:100758991..100759009,-!p3@AFF3!0.94!7.76!AFF3;;chr2:185463521..185463557,+!p3@ZNF804A!0.94!7.76!ZNF804A;;chr11:47399947..47399961,-!p3@SPI1!0.93!7.53!SPI1;;chr2:200323414..200323455,-!p1@SATB2!0.92!16.20!SATB2;;chr1:221052994..221053008,+!p6@HLX!0.92!8.67!HLX;;chr10:131762410..131762436,-!p2@EBF3!0.92!7.30!EBF3;;chr5:176738887..176738934,-!p1@MXD3!0.91!49.98!MXD3;;chr12:54694758..54694805,-!p1@NFE2!0.89!8.22!NFE2;;chr7:27213893..27213954,-!p1@HOXA10!0.89!6.85!HOXA10;;chr21:34442540..34442560,+!p2@OLIG1!0.89!6.85!OLIG1;;chr1:25256756..25256774,-!p1@RUNX3!0.88!12.78!RUNX3;;chr19:22817119..22817145,+!p1@ZNF492!0.88!11.41!ZNF492;;chr16:79634624..79634642,-!p1@MAF!0.87!26.48!MAF;;chr5:88179195..88179224,-!p3@MEF2C!0.87!10.50!MEF2C;;chr7:100076723..100076737,-!p3@TSC22D4!0.87!10.50!TSC22D4;;chr3:71631248..71631268,-!p26@FOXP1!0.87!6.39!FOXP1;;chr2:25475120..25475176,-!p2@DNMT3A!0.86!8.67!DNMT3A;;chr3:157823517..157823562,-!p1@SHOX2!0.85!6.62!SHOX2;;chr12:54380036..54380091,+!p4@HOXC10!0.84!5.93!HOXC10;;chr12:54380112..54380126,+!p5@HOXC10!0.84!5.93!HOXC10;;chr10:94449675..94449694,+!p2@HHEX!0.83!16.43!HHEX;;chr15:100106670..100106697,+!p4@MEF2A!0.83!9.81!MEF2A;;chrX:131623932..131623964,-!p7@MBNL3!0.83!8.44!MBNL3;;chr1:92952473..92952489,-!p3@GFI1!0.83!5.71!GFI1;;chr19:2867298..2867317,+!p2@ZNF556!0.83!5.71!ZNF556;;chr17:42295777..42295816,-!p7@UBTF!0.82!6.85!UBTF;;chr6:21597765..21597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Line 38: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aNKM-1.CNhs11864.10765-110E9.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aNKM-1.CNhs11864.10765-110E9.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aNKM-1.CNhs11864.10765-110E9.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aNKM-1.CNhs11864.10765-110E9.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acute%2520myeloid%2520leukemia%2520%2528FAB%2520M2%2529%2520cell%2520line%253aNKM-1.CNhs11864.10765-110E9.hg38.nobarcode.ctss.bed.gz
|id=FF:10765-110E9
|id=FF:10765-110E9
|is_a=EFO:0002091;;FF:0000210;;FF:0101883
|is_a=EFO:0002091;;FF:0000210;;FF:0101883
|is_obsolete=
|is_obsolete=
|library_id=CNhs11864
|library_id_phase_based=2:CNhs11864
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10765
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10765
|name=acute myeloid leukemia (FAB M2) cell line:NKM-1
|name=acute myeloid leukemia (FAB M2) cell line:NKM-1
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11864,LSID830,release010,COMPLETED
|profile_hcage=CNhs11864,LSID830,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 60: Line 75:
|rna_rin=
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|rna_sample_type=total RNA
|rna_sample_type=total RNA
|rna_tube_id=110E9
|rna_tube_id=1.10E+11
|rna_weight_ug=27.25065
|rna_weight_ug=27.25065
|sample_age=33
|sample_age=33
|sample_category=cell lines
|sample_cell_catalog=ifo50476
|sample_cell_catalog=ifo50476
|sample_cell_line=NKM-1
|sample_cell_line=NKM-1
Line 84: Line 100:
|top_motifs=MYB:2.2417740596;PITX1..3:2.0482046284;TOPORS:1.94426275848;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.84783971164;FOXP1:1.53750124017;E2F1..5:1.3361348304;AIRE:1.27209333471;HOXA9_MEIS1:1.15589866305;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.15316318796;YY1:1.15301478208;POU1F1:1.13077549015;ELF1,2,4:1.05926096914;RUNX1..3:1.0511382386;NKX6-1,2:0.989074886919;SPIB:0.939089211339;SPI1:0.930478793421;DMAP1_NCOR{1,2}_SMARC:0.87237887064;BREu{core}:0.863701933856;ZBTB16:0.816593710842;FOXP3:0.789582567378;POU2F1..3:0.743567014652;CUX2:0.704688721733;SOX{8,9,10}:0.684502345915;FOXD3:0.673585459367;T:0.639037534917;ZNF143:0.576094836984;NANOG:0.567464095455;IKZF2:0.556017254612;NR5A1,2:0.548511558484;PPARG:0.535515375155;FOXA2:0.529887161128;ELK1,4_GABP{A,B1}:0.514950299331;FOXQ1:0.499500019624;ETS1,2:0.489008826209;NFY{A,B,C}:0.485102775128;HOX{A6,A7,B6,B7}:0.461223227235;PRRX1,2:0.446848734354;CDX1,2,4:0.424888878078;CRX:0.411631020162;HES1:0.376904062635;TEF:0.370788249276;ZNF384:0.353957338459;NKX2-3_NKX2-5:0.326213631177;NR6A1:0.307819898495;IRF1,2:0.304511133927;CREB1:0.299522654847;ARID5B:0.299512541578;POU3F1..4:0.287595830671;HOX{A4,D4}:0.282824969105;HBP1_HMGB_SSRP1_UBTF:0.273105664375;EVI1:0.236057631722;ESR1:0.235953381173;NRF1:0.235669992593;GATA6:0.190289853956;POU5F1:0.142305961138;TFDP1:0.140242241597;ALX1:0.114696654599;NKX2-2,8:0.114690415061;NKX3-1:0.111470053874;OCT4_SOX2{dimer}:0.109493461218;HAND1,2:0.0827543522744;PBX1:0.0769342683535;bHLH_family:0.0581579048038;BPTF:0.0506765705882;ATF5_CREB3:0.0455943270617;IRF7:0.044166703519;VSX1,2:0.0289780251092;EN1,2:0.0123398994847;SOX17:0.00198609728427;AR:0.000246504072033;RFX2..5_RFXANK_RFXAP:-0.0135644929733;PAX2:-0.0403644157551;ZNF238:-0.056535805182;DBP:-0.0737995930664;SREBF1,2:-0.07472449316;MYOD1:-0.0796717149466;HNF4A_NR2F1,2:-0.0939320640969;GFI1:-0.0970076722816;GCM1,2:-0.105472784231;NKX2-1,4:-0.139892071209;POU6F1:-0.139972599203;FOXM1:-0.146155049752;FOXO1,3,4:-0.150302078331;GATA4:-0.157759922703;PAX4:-0.160175193244;KLF4:-0.16857921636;SMAD1..7,9:-0.171976107727;ONECUT1,2:-0.182332158247;MEF2{A,B,C,D}:-0.186454379739;MYBL2:-0.193473128871;RORA:-0.204070615976;PAX3,7:-0.205117336694;FOXL1:-0.206852042041;NFKB1_REL_RELA:-0.211811525671;ZEB1:-0.213848634386;STAT1,3:-0.215101262261;NANOG{mouse}:-0.243177030832;HNF1A:-0.2502212659;TGIF1:-0.263979310428;RXR{A,B,G}:-0.277799010276;LHX3,4:-0.28951523044;FOX{F1,F2,J1}:-0.335558735245;REST:-0.346791475263;NFIL3:-0.349849877224;CEBPA,B_DDIT3:-0.361535213161;TLX2:-0.384529785141;PAX5:-0.399512757963;SOX5:-0.411025010979;MTF1:-0.474557873959;HMGA1,2:-0.485747244887;SOX2:-0.492215855407;NFE2:-0.501023464093;CDC5L:-0.506405375702;MYFfamily:-0.51438006906;UFEwm:-0.520993440177;FOX{I1,J2}:-0.521123189365;GTF2A1,2:-0.531844428419;RXRA_VDR{dimer}:-0.55527017473;FOS_FOS{B,L1}_JUN{B,D}:-0.558711800921;ZFP161:-0.60598911753;LMO2:-0.606383368515;FOSL2:-0.623067451716;STAT5{A,B}:-0.628978211166;NKX3-2:-0.633363901459;GZF1:-0.637025844548;PRDM1:-0.639179933985;HOX{A5,B5}:-0.644650766823;EP300:-0.647562489629;ATF4:-0.652612232152;MZF1:-0.652791638443;RBPJ:-0.663214481343;PDX1:-0.670844620464;FOXN1:-0.689247826836;NHLH1,2:-0.692986341551;ZNF148:-0.704258253981;EBF1:-0.709930385507;SNAI1..3:-0.710752078928;PAX6:-0.728790281891;AHR_ARNT_ARNT2:-0.731890318261;BACH2:-0.74845416868;NR1H4:-0.758588741277;TFAP4:-0.766342201586;HLF:-0.793962869948;SRF:-0.795777234914;ADNP_IRX_SIX_ZHX:-0.801935775433;TFAP2{A,C}:-0.828443918728;TP53:-0.834483556431;ALX4:-0.85823276519;XBP1:-0.885932335109;PAX8:-0.922564730057;GTF2I:-0.941764209131;ESRRA:-0.946882257694;HIF1A:-0.957315354699;TBP:-0.96228843207;LEF1_TCF7_TCF7L1,2:-0.963132251382;TFAP2B:-0.969100386109;EGR1..3:-0.981143399058;FOX{D1,D2}:-0.990490175856;HSF1,2:-1.00017136119;XCPE1{core}:-1.01202720273;MTE{core}:-1.01502471102;ZNF423:-1.02552432446;ZIC1..3:-1.03020359355;IKZF1:-1.03689982234;RREB1:-1.03961156169;MED-1{core}:-1.04514953506;HIC1:-1.04770307879;TAL1_TCF{3,4,12}:-1.04774246895;PATZ1:-1.07931053642;STAT2,4,6:-1.11009797505;MAZ:-1.11041900189;NFE2L2:-1.11338495984;ZBTB6:-1.16662216664;RFX1:-1.17177779631;ATF2:-1.18706183498;TLX1..3_NFIC{dimer}:-1.19439912796;TEAD1:-1.32204660731;NFIX:-1.3279331707;GLI1..3:-1.37568968569;MAFB:-1.42552408386;SP1:-1.44407185355;HMX1:-1.45582196207;GFI1B:-1.49467948135;TFCP2:-1.54638463661;NFE2L1:-1.59807684361;PAX1,9:-1.64178329185;SPZ1:-1.67580829611;ATF6:-1.69403577052;TBX4,5:-1.9519782545;NFATC1..3:-1.96773408795;NR3C1:-2.00324738844;JUN:-2.25133369619
|top_motifs=MYB:2.2417740596;PITX1..3:2.0482046284;TOPORS:1.94426275848;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.84783971164;FOXP1:1.53750124017;E2F1..5:1.3361348304;AIRE:1.27209333471;HOXA9_MEIS1:1.15589866305;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.15316318796;YY1:1.15301478208;POU1F1:1.13077549015;ELF1,2,4:1.05926096914;RUNX1..3:1.0511382386;NKX6-1,2:0.989074886919;SPIB:0.939089211339;SPI1:0.930478793421;DMAP1_NCOR{1,2}_SMARC:0.87237887064;BREu{core}:0.863701933856;ZBTB16:0.816593710842;FOXP3:0.789582567378;POU2F1..3:0.743567014652;CUX2:0.704688721733;SOX{8,9,10}:0.684502345915;FOXD3:0.673585459367;T:0.639037534917;ZNF143:0.576094836984;NANOG:0.567464095455;IKZF2:0.556017254612;NR5A1,2:0.548511558484;PPARG:0.535515375155;FOXA2:0.529887161128;ELK1,4_GABP{A,B1}:0.514950299331;FOXQ1:0.499500019624;ETS1,2:0.489008826209;NFY{A,B,C}:0.485102775128;HOX{A6,A7,B6,B7}:0.461223227235;PRRX1,2:0.446848734354;CDX1,2,4:0.424888878078;CRX:0.411631020162;HES1:0.376904062635;TEF:0.370788249276;ZNF384:0.353957338459;NKX2-3_NKX2-5:0.326213631177;NR6A1:0.307819898495;IRF1,2:0.304511133927;CREB1:0.299522654847;ARID5B:0.299512541578;POU3F1..4:0.287595830671;HOX{A4,D4}:0.282824969105;HBP1_HMGB_SSRP1_UBTF:0.273105664375;EVI1:0.236057631722;ESR1:0.235953381173;NRF1:0.235669992593;GATA6:0.190289853956;POU5F1:0.142305961138;TFDP1:0.140242241597;ALX1:0.114696654599;NKX2-2,8:0.114690415061;NKX3-1:0.111470053874;OCT4_SOX2{dimer}:0.109493461218;HAND1,2:0.0827543522744;PBX1:0.0769342683535;bHLH_family:0.0581579048038;BPTF:0.0506765705882;ATF5_CREB3:0.0455943270617;IRF7:0.044166703519;VSX1,2:0.0289780251092;EN1,2:0.0123398994847;SOX17:0.00198609728427;AR:0.000246504072033;RFX2..5_RFXANK_RFXAP:-0.0135644929733;PAX2:-0.0403644157551;ZNF238:-0.056535805182;DBP:-0.0737995930664;SREBF1,2:-0.07472449316;MYOD1:-0.0796717149466;HNF4A_NR2F1,2:-0.0939320640969;GFI1:-0.0970076722816;GCM1,2:-0.105472784231;NKX2-1,4:-0.139892071209;POU6F1:-0.139972599203;FOXM1:-0.146155049752;FOXO1,3,4:-0.150302078331;GATA4:-0.157759922703;PAX4:-0.160175193244;KLF4:-0.16857921636;SMAD1..7,9:-0.171976107727;ONECUT1,2:-0.182332158247;MEF2{A,B,C,D}:-0.186454379739;MYBL2:-0.193473128871;RORA:-0.204070615976;PAX3,7:-0.205117336694;FOXL1:-0.206852042041;NFKB1_REL_RELA:-0.211811525671;ZEB1:-0.213848634386;STAT1,3:-0.215101262261;NANOG{mouse}:-0.243177030832;HNF1A:-0.2502212659;TGIF1:-0.263979310428;RXR{A,B,G}:-0.277799010276;LHX3,4:-0.28951523044;FOX{F1,F2,J1}:-0.335558735245;REST:-0.346791475263;NFIL3:-0.349849877224;CEBPA,B_DDIT3:-0.361535213161;TLX2:-0.384529785141;PAX5:-0.399512757963;SOX5:-0.411025010979;MTF1:-0.474557873959;HMGA1,2:-0.485747244887;SOX2:-0.492215855407;NFE2:-0.501023464093;CDC5L:-0.506405375702;MYFfamily:-0.51438006906;UFEwm:-0.520993440177;FOX{I1,J2}:-0.521123189365;GTF2A1,2:-0.531844428419;RXRA_VDR{dimer}:-0.55527017473;FOS_FOS{B,L1}_JUN{B,D}:-0.558711800921;ZFP161:-0.60598911753;LMO2:-0.606383368515;FOSL2:-0.623067451716;STAT5{A,B}:-0.628978211166;NKX3-2:-0.633363901459;GZF1:-0.637025844548;PRDM1:-0.639179933985;HOX{A5,B5}:-0.644650766823;EP300:-0.647562489629;ATF4:-0.652612232152;MZF1:-0.652791638443;RBPJ:-0.663214481343;PDX1:-0.670844620464;FOXN1:-0.689247826836;NHLH1,2:-0.692986341551;ZNF148:-0.704258253981;EBF1:-0.709930385507;SNAI1..3:-0.710752078928;PAX6:-0.728790281891;AHR_ARNT_ARNT2:-0.731890318261;BACH2:-0.74845416868;NR1H4:-0.758588741277;TFAP4:-0.766342201586;HLF:-0.793962869948;SRF:-0.795777234914;ADNP_IRX_SIX_ZHX:-0.801935775433;TFAP2{A,C}:-0.828443918728;TP53:-0.834483556431;ALX4:-0.85823276519;XBP1:-0.885932335109;PAX8:-0.922564730057;GTF2I:-0.941764209131;ESRRA:-0.946882257694;HIF1A:-0.957315354699;TBP:-0.96228843207;LEF1_TCF7_TCF7L1,2:-0.963132251382;TFAP2B:-0.969100386109;EGR1..3:-0.981143399058;FOX{D1,D2}:-0.990490175856;HSF1,2:-1.00017136119;XCPE1{core}:-1.01202720273;MTE{core}:-1.01502471102;ZNF423:-1.02552432446;ZIC1..3:-1.03020359355;IKZF1:-1.03689982234;RREB1:-1.03961156169;MED-1{core}:-1.04514953506;HIC1:-1.04770307879;TAL1_TCF{3,4,12}:-1.04774246895;PATZ1:-1.07931053642;STAT2,4,6:-1.11009797505;MAZ:-1.11041900189;NFE2L2:-1.11338495984;ZBTB6:-1.16662216664;RFX1:-1.17177779631;ATF2:-1.18706183498;TLX1..3_NFIC{dimer}:-1.19439912796;TEAD1:-1.32204660731;NFIX:-1.3279331707;GLI1..3:-1.37568968569;MAFB:-1.42552408386;SP1:-1.44407185355;HMX1:-1.45582196207;GFI1B:-1.49467948135;TFCP2:-1.54638463661;NFE2L1:-1.59807684361;PAX1,9:-1.64178329185;SPZ1:-1.67580829611;ATF6:-1.69403577052;TBX4,5:-1.9519782545;NFATC1..3:-1.96773408795;NR3C1:-2.00324738844;JUN:-2.25133369619
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10765-110E9;search_select_hide=table117:FF:10765-110E9
}}
}}

Latest revision as of 15:03, 3 June 2020

Name:acute myeloid leukemia (FAB M2) cell line:NKM-1
Species:Human (Homo sapiens)
Library ID:CNhs11864
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age33
cell typemyeloid progenitor cell
cell lineNKM-1
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005633
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11864 CAGE DRX007805 DRR008677
Accession ID Hg19

Library idBAMCTSS
CNhs11864 DRZ000102 DRZ001487
Accession ID Hg38

Library idBAMCTSS
CNhs11864 DRZ011452 DRZ012837
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.386
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.452
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0299
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.14
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0229
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.00369
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.328
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.163
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0893
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.111
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0.282
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0643
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0893
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.714
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach1.153
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.373
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.00205
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0285
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.537
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0937
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.163
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.106
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.415
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11864

Jaspar motifP-value
MA0002.20.00995
MA0003.10.658
MA0004.10.0116
MA0006.10.453
MA0007.10.671
MA0009.10.898
MA0014.10.986
MA0017.10.0886
MA0018.20.0373
MA0019.10.0137
MA0024.15.68956e-4
MA0025.10.124
MA0027.10.0313
MA0028.10.00216
MA0029.10.945
MA0030.10.211
MA0031.10.225
MA0035.20.457
MA0038.10.0246
MA0039.20.243
MA0040.10.375
MA0041.10.324
MA0042.10.486
MA0043.10.0437
MA0046.10.203
MA0047.20.286
MA0048.10.141
MA0050.10.0199
MA0051.10.281
MA0052.10.579
MA0055.10.211
MA0057.10.944
MA0058.10.00723
MA0059.10.00103
MA0060.10.12
MA0061.10.93
MA0062.22.07004e-7
MA0065.20.102
MA0066.10.614
MA0067.10.938
MA0068.10.851
MA0069.10.372
MA0070.10.695
MA0071.10.263
MA0072.10.86
MA0073.10.791
MA0074.10.641
MA0076.10.00526
MA0077.10.964
MA0078.10.751
MA0079.20.468
MA0080.24.62369e-10
MA0081.10.00162
MA0083.10.0134
MA0084.10.675
MA0087.10.574
MA0088.10.0217
MA0090.13.50269e-4
MA0091.10.349
MA0092.10.482
MA0093.10.0162
MA0099.23.65868e-5
MA0100.10.00195
MA0101.10.156
MA0102.20.342
MA0103.10.622
MA0104.28.00642e-5
MA0105.10.0247
MA0106.10.485
MA0107.10.0189
MA0108.27.08617e-7
MA0111.10.429
MA0112.20.142
MA0113.10.762
MA0114.10.0723
MA0115.10.078
MA0116.15.75159e-4
MA0117.10.843
MA0119.10.324
MA0122.10.619
MA0124.10.872
MA0125.10.631
MA0131.10.0773
MA0135.10.0324
MA0136.12.01829e-15
MA0137.20.0124
MA0138.20.614
MA0139.10.583
MA0140.10.432
MA0141.10.16
MA0142.10.917
MA0143.10.831
MA0144.10.12
MA0145.10.399
MA0146.10.0079
MA0147.12.4977e-5
MA0148.10.295
MA0149.10.156
MA0150.10.188
MA0152.10.115
MA0153.10.0734
MA0154.10.00561
MA0155.10.732
MA0156.16.34431e-8
MA0157.10.636
MA0159.10.66
MA0160.10.282
MA0162.10.77
MA0163.11.20809e-11
MA0164.10.721
MA0258.10.0517
MA0259.10.044



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11864

Novel motifP-value
10.0304
100.0141
1000.178
1010.0622
1020.738
1030.689
1040.876
1050.93
1060.627
1070.903
1080.738
1090.141
110.0423
1100.127
1110.273
1120.589
1130.522
1140.261
1150.34
1160.216
1170.00442
1180.186
1190.173
120.78
1200.203
1210.936
1220.907
1232.72946e-5
1240.108
1250.362
1260.631
1270.343
1280.671
1290.296
130.0254
1300.938
1310.533
1320.967
1330.94
1340.541
1350.343
1360.358
1370.894
1380.551
1390.239
140.526
1400.38
1410.478
1420.307
1430.235
1440.947
1450.297
1460.98
1470.406
1480.0376
1490.832
150.196
1500.583
1510.411
1520.27
1530.961
1540.666
1550.111
1560.437
1570.397
1580.96
1590.521
160.956
1600.285
1610.12
1620.436
1630.221
1640.327
1650.569
1660.746
1670.179
1680.441
1690.102
170.705
180.751
190.574
20.545
200.523
210.0882
220.69
230.133
240.597
250.223
260.0176
270.453
280.842
290.0515
30.0824
300.136
310.84
320.399
330.647
340.776
350.127
360.0376
370.18
380.488
390.603
40.053
400.466
410.988
420.142
430.369
440.392
450.345
460.0572
470.0263
480.041
490.0533
50.988
500.916
510.739
520.617
530.0815
540.988
550.916
560.659
570.101
580.254
590.645
60.299
600.713
610.0966
620.208
630.318
640.201
650.988
660.167
670.82
680.844
690.155
70.114
700.288
710.0866
720.827
730.474
740.98
750.0182
760.0898
770.827
780.031
790.553
80.0731
800.361
810.208
820.4
830.86
840.621
850.528
860.117
870.0961
880.468
890.191
90.862
900.181
910.651
920.655
930.576
940.498
950.0795
960.604
970.357
980.299
990.675



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11864


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
8692 (myeloid leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0101883 (acute myeloid leukemia cell line sample)
0100740 (myeloid leukemia cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

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