FF:11835-124G8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005040 | |||
|accession_numbers=CAGE;DRX008560;DRR009432;DRZ000857;DRZ002242;DRZ012207;DRZ013592 | |||
|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.41!24.52!PAX8;;chr12:66218598..66218645,+!p2@HMGA2!1.23!72.52!HMGA2;;chr20:55204351..55204377,+!p1@TFAP2C!1.22!19.83!TFAP2C;;chr11:46299199..46299233,+!p1@CREB3L1!1.15!67.83!CREB3L1;;chr15:83953397..83953425,-!p1@BNC1!1.15!15.13!BNC1;;chr2:176969228..176969260,+!p1@HOXD11!1.15!13.04!HOXD11;;chr2:176973498..176973524,+!p1@HOXD10!1.15!13.04!HOXD10;;chr7:27224842..27224872,-!p1@HOXA11!1.13!12.52!HOXA11;;chr1:170632285..170632309,+!p1@PRRX1!1.10!13.04!PRRX1;;chr19:42636586..42636607,-!p1@POU2F2!1.09!31.83!POU2F2;;chr12:66218255..66218304,+!p3@HMGA2!1.09!30.26!HMGA2;;chr7:44143925..44143970,+!p1@AEBP1!1.08!246.79!AEBP1;;chr7:27224795..27224840,-!p2@HOXA11!1.08!10.96!HOXA11;;chr17:59477233..59477263,+!p1@TBX2!1.07!33.39!TBX2;;chr19:45971246..45971265,+!p1@FOSB!1.06!196.18!FOSB;;chr17:41739283..41739297,-!p1@MEOX1!1.06!10.43!MEOX1;;chr2:176969179..176969226,+!p2@HOXD11!1.06!10.43!HOXD11;;chr7:44143978..44143989,+!p2@AEBP1!1.02!17.74!AEBP1;;chr6:106534192..106534224,+!p1@PRDM1!1.00!26.09!PRDM1;;chr12:66218836..66218888,+!p1@HMGA2!0.99!83.48!HMGA2;;chr3:141087393..141087426,+!p3@ZBTB38!0.99!36.00!ZBTB38;;chr11:61520075..61520136,+!p1@C11orf9!0.99!18.78!C11orf9;;chr16:86544113..86544145,+!p1@FOXF1!0.99!10.96!FOXF1;;chr3:138665937..138665968,-!p1@FOXL2!0.97!8.35!FOXL2;;chr3:25470156..25470227,+!p2@RARB!0.97!8.35!RARB;;chr7:1577899..1577943,+!p3@MAFK!0.97!8.35!MAFK;;chr17:1959369..1959388,+!p2@HIC1!0.96!21.91!HIC1;;chr8:72756063..72756125,-!p1@MSC!0.96!16.70!MSC;;chr11:46299539..46299620,+!p2@CREB3L1!0.96!14.09!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!0.96!8.87!PRRX1;;chr10:64576105..64576133,-!p1@EGR2!0.95!16.70!EGR2;;chr3:25469724..25469773,+!p1@RARB!0.95!11.48!RARB;;chr15:96869114..96869160,+!p11@NR2F2!0.95!10.96!NR2F2;;chr17:46132044..46132080,+!p4@NFE2L1!0.95!7.83!NFE2L1;;chr8:55370487..55370503,+!p1@SOX17!0.92!7.30!SOX17;;chr1:170633348..170633399,+!p2@PRRX1!0.91!9.91!PRRX1;;chr20:50179368..50179392,-!p2@NFATC2!0.91!9.39!NFATC2;;chr7:44143997..44144008,+!p3@AEBP1!0.90!8.87!AEBP1;;chr12:115122005..115122016,-!p3@TBX3!0.90!8.35!TBX3;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.83!NR2F1;;chr15:96869255..96869291,+!p6@NR2F2!0.89!12.52!NR2F2;;chr15:96869222..96869251,+!p18@NR2F2!0.88!7.83!NR2F2;;chr15:96869165..96869183,+!p20@NR2F2!0.86!6.26!NR2F2;;chr12:26277817..26277863,-!p2@BHLHE41!0.85!8.35!BHLHE41;;chr12:115121962..115121987,-!p1@TBX3!0.84!53.74!TBX3;;chr17:59477275..59477286,+!p3@TBX2!0.83!7.83!TBX2;;chr7:27205136..27205164,-!p1@HOXA9!0.83!5.74!HOXA9;;chr2:176969097..176969109,+!p3@HOXD11!0.83!5.74!HOXD11;;chr19:46801639..46801699,+!p1@HIF3A!0.83!5.74!HIF3A;;chr10:119303078..119303169,+!p2@EMX2!0.83!5.74!EMX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.83!5.74!HOXC5;;chr10:63809106..63809127,+!p1@ARID5B!0.82!80.87!ARID5B;;chr8:49833948..49833973,-!p2@SNAI2!0.82!38.09!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!0.82!19.30!TWIST2;;chr15:57511609..57511651,+!p2@TCF12!0.82!9.91!TCF12;;chr10:63809077..63809089,+!p5@ARID5B!0.81!12.52!ARID5B;;chr17:41622925..41622976,-!p3@ETV4!0.81!8.35!ETV4;;chr3:141105705..141105770,+!p4@ZBTB38!0.81!6.78!ZBTB38;;chr18:19749386..19749404,+!p2@GATA6!0.80!7.83!GATA6;;chr2:176994919..176994931,+!p2@HOXD8!0.79!5.22!HOXD8;;chr2:177001290..177001315,+!p1@HOXD3!0.79!5.22!HOXD3;;chr7:27192185..27192209,-!p1@HOXA3!0.79!5.22!HOXA3;;chr12:115121770..115121781,-!p4@TBX3!0.79!5.22!TBX3;;chr9:35732647..35732678,+!p2@CREB3!0.78!30.26!CREB3;;chr20:50721803..50721857,-!p2@ZFP64!0.76!7.83!ZFP64;;chr17:41622731..41622764,-!p5@ETV4!0.76!4.70!ETV4;;chr2:176981499..176981522,+!p2@HOXD10!0.76!4.70!HOXD10;;chr4:174450089..174450153,-!p2@HAND2!0.76!4.70!HAND2;;chr12:54394309..54394336,+!p2@HOXC9!0.76!4.70!HOXC9;;chr22:38598086..38598105,+!p1@MAFF!0.75!54.26!MAFF;;chr12:66218183..66218209,+!p4@HMGA2!0.75!9.39!HMGA2;;chr2:239756739..239756755,+!p2@TWIST2!0.75!8.35!TWIST2;;chr3:141121847..141121868,+!p5@ZBTB38!0.75!7.30!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.75!7.30!ETV4;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.26!SNAI2;;chr8:72756667..72756736,-!p2@MSC!0.74!7.30!MSC;;chr6:106534230..106534254,+!p2@PRDM1!0.73!12.00!PRDM1;;chr15:96874244..96874259,+!p5@NR2F2!0.73!11.48!NR2F2;;chr1:151032860..151032918,+!p1@MLLT11!0.71!55.30!MLLT11;;chr14:62162285..62162296,+!p3@HIF1A!0.71!24.00!HIF1A;;chr2:176994408..176994492,+!p1@HOXD8!0.71!4.17!HOXD8;;chr7:27205106..27205134,-!p2@HOXA9!0.71!4.17!HOXA9;;chr1:170632723..170632739,+!p8@PRRX1!0.71!4.17!PRRX1;;chr17:1958388..1958404,+!p1@HIC1!0.70!29.22!HIC1;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.35!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!0.70!18.78!DRAP1;;chr18:19749541..19749557,+!p1@GATA6!0.70!14.09!GATA6;;chr15:96874145..96874166,+!p7@NR2F2!0.70!8.35!NR2F2;;chr8:72756267..72756296,-!p4@MSC!0.70!6.26!MSC;;chr1:170633262..170633285,+!p3@PRRX1!0.70!4.70!PRRX1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.69!39.65!PPP1R13L;;chr11:65686802..65686818,+!p6@DRAP1!0.69!7.30!DRAP1;;chr17: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ZBTB4!0.19!1.57!ZBTB4;;chr1:35656352..35656383,-!p7@SFPQ!0.19!1.57!SFPQ;;chr19:45254529..45254561,+!p10@BCL3!0.19!1.04!BCL3;;chr19:57078386..57078407,+!p3@ZNF470!0.19!1.04!ZNF470;;chr1:40627028..40627037,+!p2@RLF!0.19!1.04!RLF;;chr20:306221..306232,+!p4@SOX12!0.19!1.04!SOX12;;chr5:178287112..178287133,+!p4@ZNF354B!0.19!1.04!ZNF354B;;chr5:43067636..43067674,+!p6@ZNF131!0.19!1.04!ZNF131;;chr6:151712922..151712942,-!p6@ZBTB2!0.19!1.04!ZBTB2;;chr6:45390343..45390388,+!p10@RUNX2!0.19!1.04!RUNX2;;chr2:192015750..192015793,-!p2@STAT4!0.19!1.04!STAT4;;chr2:25475120..25475176,-!p2@DNMT3A!0.19!1.04!DNMT3A;;chr3:48282607..48282618,+!p3@ZNF589!0.19!1.04!ZNF589;;chr4:106156933..106156947,+!p3@TET2!0.19!1.04!TET2;;chr4:146402795..146402816,+!p7@SMAD1!0.19!1.04!SMAD1;;chr12:19593515..19593573,+!p9@AEBP2!0.19!1.04!AEBP2;;chr16:73092723..73092738,-!p6@ZFHX3!0.19!1.04!ZFHX3;;chr16:73093174..73093209,-!p3@ZFHX3!0.19!1.04!ZFHX3;;chr19:12035937..12035969,+!p3@ZNF700,p4@ZNF763!0.19!1.04!ZNF700;;chr19:13136241..13136258,+!p7@NFIX!0.19!1.04!NFIX;;chr9:88969287..88969297,-!p3@ZCCHC6!0.19!1.04!ZCCHC6;;chr22:42229100..42229146,+!p1@SREBF2!0.18!137.22!SREBF2;;chr3:170075436..170075520,+!p1@SKIL!0.18!29.22!SKIL;;chr4:103422499..103422632,+!p1@NFKB1!0.18!28.17!NFKB1;;chr5:132299313..132299334,-!p1@AFF4!0.18!25.57!AFF4;;chr17:17740330..17740349,-!p3@SREBF1!0.18!8.35!SREBF1;;chr12:133614062..133614117,+!p1@ZNF84!0.18!8.35!ZNF84;;chr3:39195075..39195088,-!p1@CSRNP1!0.18!7.83!CSRNP1;;chr16:4817129..4817198,-!p1@ZNF500!0.18!6.78!ZNF500;;chr10:77161533..77161546,-!p2@ZNF503!0.18!4.70!ZNF503;;chr2:174828836..174828885,-!p5@SP3!0.18!4.17!SP3;;chr4:56413032..56413056,-!p2@CLOCK!0.18!2.61!CLOCK;;chr1:211432823..211432851,+!p3@RCOR3!0.18!2.61!RCOR3;;chr2:113033141..113033162,+!p2@ZC3H6!0.18!2.09!ZC3H6;;chrX:134478026..134478052,-!p2@ZNF75D!0.18!2.09!ZNF75D;;chr12:80084862..80084884,-!p7@PAWR!0.18!2.09!PAWR;;chr14:61191049..61191080,-!p2@SIX4!0.18!1.57!SIX4;;chr4:56413067..56413086,-!p4@CLOCK!0.18!1.57!CLOCK;;chr19:19496539..19496576,+!p8@GATAD2A!0.18!1.57!GATAD2A;;chr19:21324863..21324874,+!p2@ZNF431!0.18!1.57!ZNF431;;chr21:34143999..34144016,-!p4@GCFC1!0.18!1.57!GCFC1;;chr19:58144589..58144603,+!p2@ZNF211!0.18!1.04!ZNF211;;chr1:120190761..120190782,-!p2@ZNF697!0.18!1.04!ZNF697;;chr15:37390482..37390572,-!p7@MEIS2!0.18!1.04!MEIS2;;chr15:71184837..71184877,-!p2@THAP10!0.18!1.04!THAP10;;chr17:46127997..46128015,+!p5@NFE2L1!0.18!1.04!NFE2L1;;chr19:18391652..18391669,-!p8@JUND!0.18!1.04!JUND;;chr10:111987079..111987115,+!p3@MXI1!0.18!1.04!MXI1;;chr11:6947647..6947698,+!p2@ZNF215!0.18!1.04!ZNF215;;chr12:10865870..10865888,-!p6@CSDA!0.18!1.04!CSDA;;chr6:32095523..32095564,-!p2@ATF6B!0.18!1.04!ATF6B;;chr8:135725369..135725388,-!p3@ZFAT!0.18!1.04!ZFAT;;chr5:121465234..121465263,+!p1@ZNF474!0.18!0.52!ZNF474;;chr5:124082548..124082571,-!p9@ZNF608!0.18!0.52!ZNF608;;chr5:134369683..134369708,-!p7@PITX1!0.18!0.52!PITX1;;chr5:134370033..134370042,-!p5@PITX1!0.18!0.52!PITX1;;chr5:137800912..137800941,+!p7@EGR1!0.18!0.52!EGR1;;chr5:142780237..142780261,-!p7@NR3C1!0.18!0.52!NR3C1;;chr5:142780280..142780294,-!p16@NR3C1!0.18!0.52!NR3C1;;chr5:158140039..158140051,-!p12@EBF1!0.18!0.52!EBF1;;chr5:158523468..158523481,-!p20@EBF1!0.18!0.52!EBF1;;chr5:158527139..158527161,-!p5@EBF1!0.18!0.52!EBF1;;chr5:2751785..2751808,-!p2@IRX2!0.18!0.52!IRX2;;chr5:92919312..92919334,+!p13@NR2F1!0.18!0.52!NR2F1;;chr5:92923160..92923166,+!p23@NR2F1!0.18!0.52!NR2F1;; | |expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!1.41!24.52!PAX8;;chr12:66218598..66218645,+!p2@HMGA2!1.23!72.52!HMGA2;;chr20:55204351..55204377,+!p1@TFAP2C!1.22!19.83!TFAP2C;;chr11:46299199..46299233,+!p1@CREB3L1!1.15!67.83!CREB3L1;;chr15:83953397..83953425,-!p1@BNC1!1.15!15.13!BNC1;;chr2:176969228..176969260,+!p1@HOXD11!1.15!13.04!HOXD11;;chr2:176973498..176973524,+!p1@HOXD10!1.15!13.04!HOXD10;;chr7:27224842..27224872,-!p1@HOXA11!1.13!12.52!HOXA11;;chr1:170632285..170632309,+!p1@PRRX1!1.10!13.04!PRRX1;;chr19:42636586..42636607,-!p1@POU2F2!1.09!31.83!POU2F2;;chr12:66218255..66218304,+!p3@HMGA2!1.09!30.26!HMGA2;;chr7:44143925..44143970,+!p1@AEBP1!1.08!246.79!AEBP1;;chr7:27224795..27224840,-!p2@HOXA11!1.08!10.96!HOXA11;;chr17:59477233..59477263,+!p1@TBX2!1.07!33.39!TBX2;;chr19:45971246..45971265,+!p1@FOSB!1.06!196.18!FOSB;;chr17:41739283..41739297,-!p1@MEOX1!1.06!10.43!MEOX1;;chr2:176969179..176969226,+!p2@HOXD11!1.06!10.43!HOXD11;;chr7:44143978..44143989,+!p2@AEBP1!1.02!17.74!AEBP1;;chr6:106534192..106534224,+!p1@PRDM1!1.00!26.09!PRDM1;;chr12:66218836..66218888,+!p1@HMGA2!0.99!83.48!HMGA2;;chr3:141087393..141087426,+!p3@ZBTB38!0.99!36.00!ZBTB38;;chr11:61520075..61520136,+!p1@C11orf9!0.99!18.78!C11orf9;;chr16:86544113..86544145,+!p1@FOXF1!0.99!10.96!FOXF1;;chr3:138665937..138665968,-!p1@FOXL2!0.97!8.35!FOXL2;;chr3:25470156..25470227,+!p2@RARB!0.97!8.35!RARB;;chr7:1577899..1577943,+!p3@MAFK!0.97!8.35!MAFK;;chr17:1959369..1959388,+!p2@HIC1!0.96!21.91!HIC1;;chr8:72756063..72756125,-!p1@MSC!0.96!16.70!MSC;;chr11:46299539..46299620,+!p2@CREB3L1!0.96!14.09!CREB3L1;;chr1:170632959..170632987,+!p4@PRRX1!0.96!8.87!PRRX1;;chr10:64576105..64576133,-!p1@EGR2!0.95!16.70!EGR2;;chr3:25469724..25469773,+!p1@RARB!0.95!11.48!RARB;;chr15:96869114..96869160,+!p11@NR2F2!0.95!10.96!NR2F2;;chr17:46132044..46132080,+!p4@NFE2L1!0.95!7.83!NFE2L1;;chr8:55370487..55370503,+!p1@SOX17!0.92!7.30!SOX17;;chr1:170633348..170633399,+!p2@PRRX1!0.91!9.91!PRRX1;;chr20:50179368..50179392,-!p2@NFATC2!0.91!9.39!NFATC2;;chr7:44143997..44144008,+!p3@AEBP1!0.90!8.87!AEBP1;;chr12:115122005..115122016,-!p3@TBX3!0.90!8.35!TBX3;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.83!NR2F1;;chr15:96869255..96869291,+!p6@NR2F2!0.89!12.52!NR2F2;;chr15:96869222..96869251,+!p18@NR2F2!0.88!7.83!NR2F2;;chr15:96869165..96869183,+!p20@NR2F2!0.86!6.26!NR2F2;;chr12:26277817..26277863,-!p2@BHLHE41!0.85!8.35!BHLHE41;;chr12:115121962..115121987,-!p1@TBX3!0.84!53.74!TBX3;;chr17:59477275..59477286,+!p3@TBX2!0.83!7.83!TBX2;;chr7:27205136..27205164,-!p1@HOXA9!0.83!5.74!HOXA9;;chr2:176969097..176969109,+!p3@HOXD11!0.83!5.74!HOXD11;;chr19:46801639..46801699,+!p1@HIF3A!0.83!5.74!HIF3A;;chr10:119303078..119303169,+!p2@EMX2!0.83!5.74!EMX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.83!5.74!HOXC5;;chr10:63809106..63809127,+!p1@ARID5B!0.82!80.87!ARID5B;;chr8:49833948..49833973,-!p2@SNAI2!0.82!38.09!SNAI2;;chr2:239756671..239756732,+!p1@TWIST2!0.82!19.30!TWIST2;;chr15:57511609..57511651,+!p2@TCF12!0.82!9.91!TCF12;;chr10:63809077..63809089,+!p5@ARID5B!0.81!12.52!ARID5B;;chr17:41622925..41622976,-!p3@ETV4!0.81!8.35!ETV4;;chr3:141105705..141105770,+!p4@ZBTB38!0.81!6.78!ZBTB38;;chr18:19749386..19749404,+!p2@GATA6!0.80!7.83!GATA6;;chr2:176994919..176994931,+!p2@HOXD8!0.79!5.22!HOXD8;;chr2:177001290..177001315,+!p1@HOXD3!0.79!5.22!HOXD3;;chr7:27192185..27192209,-!p1@HOXA3!0.79!5.22!HOXA3;;chr12:115121770..115121781,-!p4@TBX3!0.79!5.22!TBX3;;chr9:35732647..35732678,+!p2@CREB3!0.78!30.26!CREB3;;chr20:50721803..50721857,-!p2@ZFP64!0.76!7.83!ZFP64;;chr17:41622731..41622764,-!p5@ETV4!0.76!4.70!ETV4;;chr2:176981499..176981522,+!p2@HOXD10!0.76!4.70!HOXD10;;chr4:174450089..174450153,-!p2@HAND2!0.76!4.70!HAND2;;chr12:54394309..54394336,+!p2@HOXC9!0.76!4.70!HOXC9;;chr22:38598086..38598105,+!p1@MAFF!0.75!54.26!MAFF;;chr12:66218183..66218209,+!p4@HMGA2!0.75!9.39!HMGA2;;chr2:239756739..239756755,+!p2@TWIST2!0.75!8.35!TWIST2;;chr3:141121847..141121868,+!p5@ZBTB38!0.75!7.30!ZBTB38;;chr17:41622765..41622821,-!p2@ETV4!0.75!7.30!ETV4;;chr8:49833978..49833996,-!p1@SNAI2!0.74!102.26!SNAI2;;chr8:72756667..72756736,-!p2@MSC!0.74!7.30!MSC;;chr6:106534230..106534254,+!p2@PRDM1!0.73!12.00!PRDM1;;chr15:96874244..96874259,+!p5@NR2F2!0.73!11.48!NR2F2;;chr1:151032860..151032918,+!p1@MLLT11!0.71!55.30!MLLT11;;chr14:62162285..62162296,+!p3@HIF1A!0.71!24.00!HIF1A;;chr2:176994408..176994492,+!p1@HOXD8!0.71!4.17!HOXD8;;chr7:27205106..27205134,-!p2@HOXA9!0.71!4.17!HOXA9;;chr1:170632723..170632739,+!p8@PRRX1!0.71!4.17!PRRX1;;chr17:1958388..1958404,+!p1@HIC1!0.70!29.22!HIC1;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.35!DRAP1;;chr11:65686732..65686756,+!p2@DRAP1!0.70!18.78!DRAP1;;chr18:19749541..19749557,+!p1@GATA6!0.70!14.09!GATA6;;chr15:96874145..96874166,+!p7@NR2F2!0.70!8.35!NR2F2;;chr8:72756267..72756296,-!p4@MSC!0.70!6.26!MSC;;chr1:170633262..170633285,+!p3@PRRX1!0.70!4.70!PRRX1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.69!39.65!PPP1R13L;;chr11:65686802..65686818,+!p6@DRAP1!0.69!7.30!DRAP1;;chr17:46126136..46126152,+!p1@NFE2L1!0.68!225.39!NFE2L1;;chr12:124873357..124873401,-!p1@NCOR2!0.68!50.09!NCOR2;;chr14:62162258..62162269,+!p2@HIF1A!0.68!42.26!HIF1A;;chr5:72744594..72744609,-!p1@FOXD1!0.68!19.83!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!0.68!6.78!FOXD1;;chr12:26277929..26277955,-!p3@BHLHE41!0.68!5.74!BHLHE41;;chr12:77459306..77459365,-!p1@E2F7!0.67!53.74!E2F7;;chr6:21597765..21597779,+!p2@SOX4!0.67!33.91!SOX4;;chr10:63809013..63809041,+!p3@ARID5B!0.67!23.48!ARID5B;;chr10:63809134..63809145,+!p6@ARID5B!0.67!9.39!ARID5B;;chr10:119302645..119302712,+!p3@EMX2!0.67!3.65!EMX2;;chr22:21771656..21771662,+!p1@HIC2!0.67!3.65!HIC2;;chr2:176972000..176972025,+!p4@HOXD11!0.67!3.65!HOXD11;;chr3:25469815..25469866,+!p3@RARB!0.67!3.65!RARB;;chr1:170633058..170633084,+!p5@PRRX1!0.67!3.65!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.67!3.65!ZNF668;;chr16:86612320..86612394,+!p1@FOXL1!0.67!3.65!FOXL1;;chr7:26191809..26191890,+!p1@NFE2L3!0.66!20.35!NFE2L3;;chr2:66662281..66662308,+!p1@MEIS1!0.66!14.09!MEIS1;;chr12:66218573..66218596,+!p7@HMGA2!0.66!5.74!HMGA2;;chr12:24715376..24715432,-!p1@SOX5!0.66!4.70!SOX5;;chr8:72756637..72756664,-!p3@MSC!0.66!4.17!MSC;;chr12:66218443..66218461,+!p8@HMGA2!0.65!4.70!HMGA2;;chr5:92918894..92918912,+!p2@NR2F1!0.64!12.52!NR2F1;;chr12:66218212..66218244,+!p5@HMGA2!0.64!5.22!HMGA2;;chr15:96869292..96869320,+!p15@NR2F2!0.64!5.22!NR2F2;;chr5:92919375..92919438,+!p6@NR2F1!0.64!3.65!NR2F1;;chr5:321810..321877,+!p1@AHRR!0.62!11.48!AHRR;;chr10:63809090..63809097,+!p7@ARID5B!0.62!4.70!ARID5B;;chr12:66218904..66218913,+!p11@HMGA2!0.62!3.13!HMGA2;;chr7:27195867..27195893,-!p3@HOXA7!0.62!3.13!HOXA7;;chr8:72755987..72756002,-!p7@MSC!0.62!3.13!MSC;;chr16:51185172..51185197,-!p1@SALL1!0.62!3.13!SALL1;;chr3:141087562..141087594,+!p12@ZBTB38!0.62!3.13!ZBTB38;;chr4:174451370..174451387,-!p1@HAND2!0.62!3.13!HAND2;;chr4:26322267..26322334,+!p3@RBPJ!0.61!8.35!RBPJ;;chr12:66218378..66218401,+!p6@HMGA2!0.61!5.22!HMGA2;;chrX:66763856..66763896,+!p1@AR!0.61!4.70!AR;;chr5:137801160..137801176,+!p1@EGR1!0.60!364.70!EGR1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.60!44.35!ZC3H12A;;chr12:26277956..26277980,-!p1@BHLHE41!0.60!12.52!BHLHE41;;chr21:36260343..36260402,-!p6@RUNX1!0.60!5.22!RUNX1;;chr12:26278008..26278024,-!p4@BHLHE41!0.60!3.65!BHLHE41;;chr15:96874012..96874042,+!p2@NR2F2!0.59!31.83!NR2F2;;chr17:38498594..38498661,+!p2@RARA!0.59!11.48!RARA;;chr21:36259445..36259519,-!p4@RUNX1!0.59!9.39!RUNX1;;chr14:24837368..24837401,+!p1@NFATC4!0.59!7.83!NFATC4;;chr22:38598057..38598071,+!p3@MAFF!0.59!7.83!MAFF;;chr2:121493425..121493474,+!p1@GLI2!0.59!7.30!GLI2;;chr3:141087339..141087387,+!p2@ZBTB38!0.58!34.96!ZBTB38;;chr2:145275162..145275202,-!p2@ZEB2!0.58!19.83!ZEB2;;chr5:139487608..139487663,+!p3@PURA!0.58!6.78!PURA;;chr5:92918956..92918969,+!p4@NR2F1!0.58!3.13!NR2F1;;chr18:52989001..52989030,-!p10@TCF4!0.58!3.13!TCF4;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.57!33.39!GLIS2;;chr21:30671690..30671762,+!p2@BACH1!0.57!10.96!BACH1;;chr11:65687222..65687240,+!p7@DRAP1!0.57!3.65!DRAP1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.56!235.83!TAX1BP3;;chr3:101568349..101568365,+!p1@NFKBIZ!0.56!173.22!NFKBIZ;;chr1:212782094..212782109,+!p1@ATF3!0.56!90.78!ATF3;;chr12:48298765..48298783,-!p2@VDR!0.56!6.26!VDR;;chr20:48807456..48807475,+!p3@CEBPB!0.56!5.74!CEBPB;;chr12:80085061..80085119,-!p6@PAWR!0.56!4.70!PAWR;;chr20:6748325..6748352,+!p1@BMP2!0.56!4.17!BMP2;;chrX:66763815..66763854,+!p2@AR!0.56!3.65!AR;;chr8:72756213..72756243,-!p5@MSC!0.56!3.65!MSC;;chr2:101591314..101591333,+!p2@NPAS2!0.56!3.13!NPAS2;;chr2:176969124..176969155,+!p5@HOXD11!0.56!2.61!HOXD11;;chr2:176981526..176981543,+!p3@HOXD10!0.56!2.61!HOXD10;;chr2:176987441..176987454,+!p1@HOXD9!0.56!2.61!HOXD9;;chr2:208030614..208030625,-!p9@KLF7!0.56!2.61!KLF7;;chr3:138665774..138665786,-!p5@FOXL2!0.56!2.61!FOXL2;;chr3:25470062..25470084,+!p4@RARB!0.56!2.61!RARB;;chr4:57522598..57522664,-!p3@HOPX!0.56!2.61!HOPX;;chr5:92918768..92918783,+!p8@NR2F1!0.56!2.61!NR2F1;;chr8:72756194..72756208,-!p9@MSC!0.56!2.61!MSC;;chr11:16627528..16627550,-!p7@SOX6!0.56!2.61!SOX6;;chr12:115122318..115122331,-!p2@TBX3!0.56!2.61!TBX3;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.56!2.61!HOXC5;;chr12:54410948..54410992,+!p3@HOXC5!0.56!2.61!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!0.56!2.61!HOXC6;;chr12:66218420..66218439,+!p12@HMGA2!0.56!2.61!HMGA2;;chr12:80085120..80085156,-!p14@PAWR!0.56!2.61!PAWR;;chr1:170632250..170632277,+!p7@PRRX1!0.56!2.61!PRRX1;;chr1:170632683..170632696,+!p12@PRRX1!0.56!2.61!PRRX1;;chr21:36260325..36260341,-!p14@RUNX1!0.56!2.61!RUNX1;;chr15:96869206..96869220,+!p21@NR2F2!0.56!2.61!NR2F2;;chr17:46659728..46659749,-!p3@HOXB3!0.56!2.61!HOXB3;;chr17:59477403..59477414,+!p4@TBX2!0.56!2.61!TBX2;;chr18:52988952..52988965,-!p23@TCF4!0.56!2.61!TCF4;;chr1:221052776..221052799,+!p1@HLX!0.55!5.22!HLX;;chr12:125002739..125002756,-!p6@NCOR2!0.55!4.17!NCOR2;;chr18:56530136..56530199,+!p3@ZNF532!0.55!4.17!ZNF532;;chr11:12696071..12696086,+!p3@TEAD1!0.55!3.65!TE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| ||
Line 38: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520ovarian%2520cancer%2520metastasis%252c%2520donor2.CNhs13093.11835-124G8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11835-124G8 | |id=FF:11835-124G8 | ||
|is_a=EFO:0002091;;FF:0000274 | |is_a=EFO:0002091;;FF:0000274 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13093 | |||
|library_id_phase_based=2:CNhs13093 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11835 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11835 | |||
|name=mesenchymal precursor cell - ovarian cancer metastasis, donor2 | |name=mesenchymal precursor cell - ovarian cancer metastasis, donor2 | ||
|namespace= | |namespace= | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13093,LSID1001,release013,COMPLETED | |profile_hcage=CNhs13093,LSID1001,release013,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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|rna_box=124 | |rna_box=124 | ||
Line 62: | Line 78: | ||
|rna_weight_ug=14.32655 | |rna_weight_ug=14.32655 | ||
|sample_age= | |sample_age= | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 83: | Line 100: | ||
|top_motifs=PAX4:2.00908478193;SRF:1.65722958107;HIF1A:1.58016283354;ALX4:1.52521756689;UFEwm:1.4665211793;ZNF384:1.42800486425;GZF1:1.40317069146;TAL1_TCF{3,4,12}:1.38596707902;NR3C1:1.31342217067;ESR1:1.29066279842;TEF:1.25764251913;ZNF238:1.25347163696;RXRA_VDR{dimer}:1.18027069119;NKX3-1:1.11169282036;ATF6:1.11032971605;NFE2L1:1.08829963378;HOX{A4,D4}:1.05413997129;GLI1..3:1.05322501337;HSF1,2:1.01336799274;TEAD1:0.988271381377;MYBL2:0.972253603573;XBP1:0.961268611846;TLX1..3_NFIC{dimer}:0.936936434776;SPZ1:0.935812078714;EVI1:0.930100282034;RXR{A,B,G}:0.917214262049;TBP:0.894415288785;ZIC1..3:0.881775059096;HES1:0.848661339077;ZBTB16:0.842754976441;EN1,2:0.778773255837;EBF1:0.775718017838;XCPE1{core}:0.766872960883;HOX{A5,B5}:0.739263713421;GTF2A1,2:0.733510807627;TOPORS:0.729753898076;ZBTB6:0.729125076333;NR6A1:0.713901312936;AIRE:0.681077066364;FOXL1:0.68100992438;PRDM1:0.680583870195;TP53:0.656446231648;HMX1:0.650466012878;TFCP2:0.635739359949;PPARG:0.609494976459;HMGA1,2:0.604610033878;MAFB:0.598559978177;MTE{core}:0.596879620582;NFATC1..3:0.589784265829;GATA4:0.581348619477;PAX1,9:0.572530004288;KLF4:0.551074871602;GCM1,2:0.546767722744;PAX8:0.521355409863;SOX17:0.509186439892;HLF:0.46970558819;ONECUT1,2:0.455413539323;TFAP2{A,C}:0.439167412747;MZF1:0.434419585964;bHLH_family:0.361753326103;HBP1_HMGB_SSRP1_UBTF:0.359971436003;GTF2I:0.322776353411;SMAD1..7,9:0.307835717564;TFAP2B:0.297969066696;TFAP4:0.290064208367;POU6F1:0.278307222056;NFE2L2:0.274910130823;ZFP161:0.264118534543;NHLH1,2:0.255574469301;HAND1,2:0.223251329014;GFI1B:0.214938501832;PATZ1:0.212520772115;IKZF1:0.191315528575;LHX3,4:0.187284766724;HOXA9_MEIS1:0.179378929272;FOS_FOS{B,L1}_JUN{B,D}:0.173156544603;IRF1,2:0.161934638374;MAZ:0.145986789698;ALX1:0.14580420188;BACH2:0.142766596069;NFE2:0.140313592995;NKX2-2,8:0.136396552471;POU1F1:0.123069356787;NKX3-2:0.106826653862;TFDP1:0.0948918699145;FOXD3:0.0899065462658;CDC5L:0.0785438216434;SREBF1,2:0.0748663327634;SP1:0.0544523222394;MYFfamily:0.0537327601433;POU3F1..4:0.0509681067711;ZNF423:0.0473988650666;NKX2-1,4:0.0452027654702;NKX6-1,2:0.0443939083344;AR:0.0408536310782;FOXP1:0.037926897055;FOSL2:0.0207661957311;RREB1:0.0138593872907;EP300:0.00550394331337;NANOG{mouse}:0.00372066432241;ATF2:-0.00692146324814;TBX4,5:-0.0156768050761;RFX1:-0.0231951327174;REST:-0.038128464438;MED-1{core}:-0.0418615939026;HNF1A:-0.0619339309856;HOX{A6,A7,B6,B7}:-0.0793363405929;HIC1:-0.0830229335992;PAX2:-0.107680058021;NFKB1_REL_RELA:-0.108278946283;PITX1..3:-0.11336588736;TLX2:-0.126362056915;SOX2:-0.160785221345;SOX5:-0.161190522936;RUNX1..3:-0.169020647918;STAT2,4,6:-0.169059643655;ZNF148:-0.178457686318;AHR_ARNT_ARNT2:-0.197526448964;LEF1_TCF7_TCF7L1,2:-0.199055254974;FOX{D1,D2}:-0.20415486005;JUN:-0.208354021735;NFIX:-0.209246400922;CREB1:-0.222655948578;HNF4A_NR2F1,2:-0.228885228563;MEF2{A,B,C,D}:-0.254535346047;PAX3,7:-0.262345253515;FOX{I1,J2}:-0.274082965481;DBP:-0.302369300403;CRX:-0.309500014288;DMAP1_NCOR{1,2}_SMARC:-0.315610800839;EGR1..3:-0.338810698355;ETS1,2:-0.340535126839;MTF1:-0.341045172694;BPTF:-0.352839027046;CDX1,2,4:-0.357046842064;CEBPA,B_DDIT3:-0.38331707299;MYOD1:-0.389863761048;OCT4_SOX2{dimer}:-0.414095527931;POU2F1..3:-0.444573323756;NR1H4:-0.476559280849;NKX2-3_NKX2-5:-0.489546488685;CUX2:-0.491439506048;ZEB1:-0.491847261635;FOXA2:-0.502744907016;ADNP_IRX_SIX_ZHX:-0.516531888562;NR5A1,2:-0.518438651771;MYB:-0.523813848045;LMO2:-0.525676674861;STAT5{A,B}:-0.530823387376;ATF4:-0.557820669246;POU5F1:-0.586080842955;ARID5B:-0.590866119809;NFIL3:-0.600707083441;SPIB:-0.603849827864;ZNF143:-0.634580521847;IRF7:-0.636362582812;SPI1:-0.640776193043;FOXO1,3,4:-0.664759304271;NRF1:-0.679951195485;ATF5_CREB3:-0.683619321137;PRRX1,2:-0.689566043867;T:-0.707683255604;SNAI1..3:-0.708417072354;ELK1,4_GABP{A,B1}:-0.712557752679;YY1:-0.724427109506;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.734567814782;TGIF1:-0.744645046316;ELF1,2,4:-0.74777811087;PAX5:-0.789047669896;GATA6:-0.792715030555;RFX2..5_RFXANK_RFXAP:-0.815610503818;FOXM1:-0.824777450788;SOX{8,9,10}:-0.864680034163;GFI1:-0.867217712173;E2F1..5:-0.885143372069;IKZF2:-0.91289128356;PAX6:-0.930247004777;FOXQ1:-0.970597380085;PDX1:-1.02464606483;FOXN1:-1.02586457271;STAT1,3:-1.02693953928;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.11291892841;RBPJ:-1.12134092211;VSX1,2:-1.1333322853;RORA:-1.13732071006;NFY{A,B,C}:-1.17766028512;ESRRA:-1.18120514259;FOXP3:-1.27285552892;BREu{core}:-1.28694506941;PBX1:-1.38940193435;NANOG:-1.47107864883;FOX{F1,F2,J1}:-1.74117366573 | |top_motifs=PAX4:2.00908478193;SRF:1.65722958107;HIF1A:1.58016283354;ALX4:1.52521756689;UFEwm:1.4665211793;ZNF384:1.42800486425;GZF1:1.40317069146;TAL1_TCF{3,4,12}:1.38596707902;NR3C1:1.31342217067;ESR1:1.29066279842;TEF:1.25764251913;ZNF238:1.25347163696;RXRA_VDR{dimer}:1.18027069119;NKX3-1:1.11169282036;ATF6:1.11032971605;NFE2L1:1.08829963378;HOX{A4,D4}:1.05413997129;GLI1..3:1.05322501337;HSF1,2:1.01336799274;TEAD1:0.988271381377;MYBL2:0.972253603573;XBP1:0.961268611846;TLX1..3_NFIC{dimer}:0.936936434776;SPZ1:0.935812078714;EVI1:0.930100282034;RXR{A,B,G}:0.917214262049;TBP:0.894415288785;ZIC1..3:0.881775059096;HES1:0.848661339077;ZBTB16:0.842754976441;EN1,2:0.778773255837;EBF1:0.775718017838;XCPE1{core}:0.766872960883;HOX{A5,B5}:0.739263713421;GTF2A1,2:0.733510807627;TOPORS:0.729753898076;ZBTB6:0.729125076333;NR6A1:0.713901312936;AIRE:0.681077066364;FOXL1:0.68100992438;PRDM1:0.680583870195;TP53:0.656446231648;HMX1:0.650466012878;TFCP2:0.635739359949;PPARG:0.609494976459;HMGA1,2:0.604610033878;MAFB:0.598559978177;MTE{core}:0.596879620582;NFATC1..3:0.589784265829;GATA4:0.581348619477;PAX1,9:0.572530004288;KLF4:0.551074871602;GCM1,2:0.546767722744;PAX8:0.521355409863;SOX17:0.509186439892;HLF:0.46970558819;ONECUT1,2:0.455413539323;TFAP2{A,C}:0.439167412747;MZF1:0.434419585964;bHLH_family:0.361753326103;HBP1_HMGB_SSRP1_UBTF:0.359971436003;GTF2I:0.322776353411;SMAD1..7,9:0.307835717564;TFAP2B:0.297969066696;TFAP4:0.290064208367;POU6F1:0.278307222056;NFE2L2:0.274910130823;ZFP161:0.264118534543;NHLH1,2:0.255574469301;HAND1,2:0.223251329014;GFI1B:0.214938501832;PATZ1:0.212520772115;IKZF1:0.191315528575;LHX3,4:0.187284766724;HOXA9_MEIS1:0.179378929272;FOS_FOS{B,L1}_JUN{B,D}:0.173156544603;IRF1,2:0.161934638374;MAZ:0.145986789698;ALX1:0.14580420188;BACH2:0.142766596069;NFE2:0.140313592995;NKX2-2,8:0.136396552471;POU1F1:0.123069356787;NKX3-2:0.106826653862;TFDP1:0.0948918699145;FOXD3:0.0899065462658;CDC5L:0.0785438216434;SREBF1,2:0.0748663327634;SP1:0.0544523222394;MYFfamily:0.0537327601433;POU3F1..4:0.0509681067711;ZNF423:0.0473988650666;NKX2-1,4:0.0452027654702;NKX6-1,2:0.0443939083344;AR:0.0408536310782;FOXP1:0.037926897055;FOSL2:0.0207661957311;RREB1:0.0138593872907;EP300:0.00550394331337;NANOG{mouse}:0.00372066432241;ATF2:-0.00692146324814;TBX4,5:-0.0156768050761;RFX1:-0.0231951327174;REST:-0.038128464438;MED-1{core}:-0.0418615939026;HNF1A:-0.0619339309856;HOX{A6,A7,B6,B7}:-0.0793363405929;HIC1:-0.0830229335992;PAX2:-0.107680058021;NFKB1_REL_RELA:-0.108278946283;PITX1..3:-0.11336588736;TLX2:-0.126362056915;SOX2:-0.160785221345;SOX5:-0.161190522936;RUNX1..3:-0.169020647918;STAT2,4,6:-0.169059643655;ZNF148:-0.178457686318;AHR_ARNT_ARNT2:-0.197526448964;LEF1_TCF7_TCF7L1,2:-0.199055254974;FOX{D1,D2}:-0.20415486005;JUN:-0.208354021735;NFIX:-0.209246400922;CREB1:-0.222655948578;HNF4A_NR2F1,2:-0.228885228563;MEF2{A,B,C,D}:-0.254535346047;PAX3,7:-0.262345253515;FOX{I1,J2}:-0.274082965481;DBP:-0.302369300403;CRX:-0.309500014288;DMAP1_NCOR{1,2}_SMARC:-0.315610800839;EGR1..3:-0.338810698355;ETS1,2:-0.340535126839;MTF1:-0.341045172694;BPTF:-0.352839027046;CDX1,2,4:-0.357046842064;CEBPA,B_DDIT3:-0.38331707299;MYOD1:-0.389863761048;OCT4_SOX2{dimer}:-0.414095527931;POU2F1..3:-0.444573323756;NR1H4:-0.476559280849;NKX2-3_NKX2-5:-0.489546488685;CUX2:-0.491439506048;ZEB1:-0.491847261635;FOXA2:-0.502744907016;ADNP_IRX_SIX_ZHX:-0.516531888562;NR5A1,2:-0.518438651771;MYB:-0.523813848045;LMO2:-0.525676674861;STAT5{A,B}:-0.530823387376;ATF4:-0.557820669246;POU5F1:-0.586080842955;ARID5B:-0.590866119809;NFIL3:-0.600707083441;SPIB:-0.603849827864;ZNF143:-0.634580521847;IRF7:-0.636362582812;SPI1:-0.640776193043;FOXO1,3,4:-0.664759304271;NRF1:-0.679951195485;ATF5_CREB3:-0.683619321137;PRRX1,2:-0.689566043867;T:-0.707683255604;SNAI1..3:-0.708417072354;ELK1,4_GABP{A,B1}:-0.712557752679;YY1:-0.724427109506;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.734567814782;TGIF1:-0.744645046316;ELF1,2,4:-0.74777811087;PAX5:-0.789047669896;GATA6:-0.792715030555;RFX2..5_RFXANK_RFXAP:-0.815610503818;FOXM1:-0.824777450788;SOX{8,9,10}:-0.864680034163;GFI1:-0.867217712173;E2F1..5:-0.885143372069;IKZF2:-0.91289128356;PAX6:-0.930247004777;FOXQ1:-0.970597380085;PDX1:-1.02464606483;FOXN1:-1.02586457271;STAT1,3:-1.02693953928;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.11291892841;RBPJ:-1.12134092211;VSX1,2:-1.1333322853;RORA:-1.13732071006;NFY{A,B,C}:-1.17766028512;ESRRA:-1.18120514259;FOXP3:-1.27285552892;BREu{core}:-1.28694506941;PBX1:-1.38940193435;NANOG:-1.47107864883;FOX{F1,F2,J1}:-1.74117366573 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11835-124G8;search_select_hide=table117:FF:11835-124G8 | |||
}} | }} |
Latest revision as of 18:22, 4 June 2020
Name: | mesenchymal precursor cell - ovarian cancer metastasis, donor2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13093 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13093
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13093
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.812 |
10 | 10 | 0.954 |
100 | 100 | 0.846 |
101 | 101 | 0.832 |
102 | 102 | 0.536 |
103 | 103 | 0.592 |
104 | 104 | 0.823 |
105 | 105 | 0.106 |
106 | 106 | 9.29043e-4 |
107 | 107 | 0.016 |
108 | 108 | 0.0504 |
109 | 109 | 0.779 |
11 | 11 | 0.68 |
110 | 110 | 0.458 |
111 | 111 | 0.849 |
112 | 112 | 0.132 |
113 | 113 | 0.809 |
114 | 114 | 0.235 |
115 | 115 | 0.203 |
116 | 116 | 0.0898 |
117 | 117 | 0.816 |
118 | 118 | 0.852 |
119 | 119 | 0.627 |
12 | 12 | 0.594 |
120 | 120 | 0.176 |
121 | 121 | 0.757 |
122 | 122 | 0.00433 |
123 | 123 | 0.423 |
124 | 124 | 0.34 |
125 | 125 | 0.274 |
126 | 126 | 0.848 |
127 | 127 | 0.574 |
128 | 128 | 0.231 |
129 | 129 | 0.291 |
13 | 13 | 0.51 |
130 | 130 | 0.0606 |
131 | 131 | 0.614 |
132 | 132 | 0.376 |
133 | 133 | 0.764 |
134 | 134 | 0.542 |
135 | 135 | 0.564 |
136 | 136 | 0.645 |
137 | 137 | 0.113 |
138 | 138 | 0.475 |
139 | 139 | 0.679 |
14 | 14 | 0.134 |
140 | 140 | 0.283 |
141 | 141 | 0.672 |
142 | 142 | 0.397 |
143 | 143 | 0.313 |
144 | 144 | 0.501 |
145 | 145 | 0.237 |
146 | 146 | 0.445 |
147 | 147 | 0.111 |
148 | 148 | 0.683 |
149 | 149 | 0.121 |
15 | 15 | 0.952 |
150 | 150 | 0.227 |
151 | 151 | 0.629 |
152 | 152 | 0.0253 |
153 | 153 | 0.233 |
154 | 154 | 0.797 |
155 | 155 | 0.136 |
156 | 156 | 0.791 |
157 | 157 | 0.87 |
158 | 158 | 0.255 |
159 | 159 | 0.874 |
16 | 16 | 0.122 |
160 | 160 | 0.421 |
161 | 161 | 0.667 |
162 | 162 | 0.113 |
163 | 163 | 0.155 |
164 | 164 | 0.0719 |
165 | 165 | 0.618 |
166 | 166 | 0.0526 |
167 | 167 | 0.653 |
168 | 168 | 0.863 |
169 | 169 | 0.0411 |
17 | 17 | 0.211 |
18 | 18 | 0.101 |
19 | 19 | 0.0441 |
2 | 2 | 0.36 |
20 | 20 | 0.363 |
21 | 21 | 0.128 |
22 | 22 | 0.553 |
23 | 23 | 0.0453 |
24 | 24 | 0.395 |
25 | 25 | 0.0271 |
26 | 26 | 0.48 |
27 | 27 | 0.476 |
28 | 28 | 0.163 |
29 | 29 | 0.43 |
3 | 3 | 0.6 |
30 | 30 | 0.66 |
31 | 31 | 0.813 |
32 | 32 | 8.55417e-11 |
33 | 33 | 0.83 |
34 | 34 | 0.763 |
35 | 35 | 0.604 |
36 | 36 | 0.0979 |
37 | 37 | 0.0493 |
38 | 38 | 0.441 |
39 | 39 | 0.186 |
4 | 4 | 0.76 |
40 | 40 | 0.675 |
41 | 41 | 0.632 |
42 | 42 | 0.243 |
43 | 43 | 0.817 |
44 | 44 | 0.491 |
45 | 45 | 0.973 |
46 | 46 | 0.226 |
47 | 47 | 0.879 |
48 | 48 | 0.71 |
49 | 49 | 0.98 |
5 | 5 | 0.74 |
50 | 50 | 0.435 |
51 | 51 | 0.892 |
52 | 52 | 0.601 |
53 | 53 | 0.302 |
54 | 54 | 0.671 |
55 | 55 | 0.128 |
56 | 56 | 0.867 |
57 | 57 | 0.43 |
58 | 58 | 0.387 |
59 | 59 | 0.298 |
6 | 6 | 0.551 |
60 | 60 | 0.595 |
61 | 61 | 0.619 |
62 | 62 | 0.939 |
63 | 63 | 0.291 |
64 | 64 | 0.615 |
65 | 65 | 0.631 |
66 | 66 | 0.0281 |
67 | 67 | 0.508 |
68 | 68 | 0.972 |
69 | 69 | 0.986 |
7 | 7 | 0.0645 |
70 | 70 | 0.0641 |
71 | 71 | 0.293 |
72 | 72 | 0.326 |
73 | 73 | 0.023 |
74 | 74 | 0.165 |
75 | 75 | 0.821 |
76 | 76 | 0.871 |
77 | 77 | 0.0633 |
78 | 78 | 0.859 |
79 | 79 | 1.89779e-4 |
8 | 8 | 0.218 |
80 | 80 | 0.48 |
81 | 81 | 0.743 |
82 | 82 | 0.522 |
83 | 83 | 0.197 |
84 | 84 | 0.617 |
85 | 85 | 0.0321 |
86 | 86 | 0.986 |
87 | 87 | 0.583 |
88 | 88 | 0.709 |
89 | 89 | 0.193 |
9 | 9 | 0.718 |
90 | 90 | 0.858 |
91 | 91 | 0.695 |
92 | 92 | 0.279 |
93 | 93 | 0.889 |
94 | 94 | 0.362 |
95 | 95 | 0.608 |
96 | 96 | 0.734 |
97 | 97 | 0.513 |
98 | 98 | 0.696 |
99 | 99 | 0.0129 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13093
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000274 human mesenchymal precursor cell- ovarian cancer-metastasis sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
193 (reproductive organ cancer)
2394 (ovarian cancer)
120 (female reproductive organ cancer)
UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000272 (human ovarian cancer mesenchymal precursor cell sample)
0000274 (human mesenchymal precursor cell- ovarian cancer-metastasis sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)