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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005010
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005010
|accession_numbers=CAGE;DRX007822;DRR008694;DRZ000119;DRZ001504;DRZ011469;DRZ012854
|accession_numbers_RNASeq=RNA-Seq;DRX057142;DRR062901;DRZ007977
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
Line 7: Line 11:
|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.25!278.47!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!2.14!136.05!EHF;;chr1:201979743..201979762,+!p1@ELF3!2.10!123.70!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.94!86.46!ELF3;;chr3:12330560..12330579,+!p1@PPARG!1.91!91.32!PPARG;;chr1:53925063..53925076,+!p2@DMRTB1!1.88!74.48!DMRTB1;;chr8:76319876..76319926,+!p1@HNF4G!1.77!57.27!HNF4G;;chr7:73038839..73038862,-!p1@MLXIPL!1.76!56.52!MLXIPL;;chr20:42984330..42984364,+!p2@HNF4A!1.63!41.55!HNF4A;;chr10:48355030..48355090,+!p1@ZNF488!1.57!46.22!ZNF488;;chr17:46682321..46682362,-!p1@HOXB6!1.56!35.37!HOXB6;;chr1:151804244..151804310,-!p1@RORC!1.50!30.50!RORC;;chr12:52445218..52445237,+!p1@NR4A1!1.47!345.65!NR4A1;;chr13:73633131..73633149,+!p1@KLF5!1.47!292.31!KLF5;;chr8:11561684..11561751,+!p1@GATA4!1.46!27.70!GATA4;;chr6:135502501..135502546,+!p1@MYB!1.43!31.07!MYB;;chr17:17726907..17726958,-!p2@SREBF1!1.41!148.22!SREBF1;;chr19:33793430..33793447,-!p1@CEBPA!1.41!102.37!CEBPA;;chr11:34642656..34642667,+!p2@EHF!1.40!24.33!EHF;;chr8:102504651..102504683,+!p1@GRHL2!1.39!23.58!GRHL2;;chr3:169381420..169381535,-!p1@MECOM!1.38!26.57!MECOM;;chr16:85932760..85932775,+!p1@IRF8!1.36!21.71!IRF8;;chr1:209979467..209979494,-!p1@IRF6!1.34!23.21!IRF6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.34!20.77!TFCP2L1;;chr17:46687959..46688007,-!p2@HOXB7!1.31!26.39!HOXB7;;chr11:65554528..65554546,+!p1@OVOL1!1.29!18.53!OVOL1;;chr18:19749541..19749557,+!p1@GATA6!1.28!56.33!GATA6;;chr13:28543285..28543314,-!p2@CDX2!1.28!18.15!CDX2;;chr10:135122906..135122921,+!p4@ZNF511!1.25!16.84!ZNF511;;chr6:10415484..10415508,-!p3@TFAP2A!1.22!15.53!TFAP2A;;chr11:61520075..61520136,+!p1@C11orf9!1.21!32.00!C11orf9;;chr18:19749517..19749531,+!p3@GATA6!1.21!26.76!GATA6;;chr7:96634850..96634874,+!p3@DLX6!1.20!14.97!DLX6;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.71!PITX1;;chr7:156803329..156803362,-!p1@MNX1!1.18!14.04!MNX1;;chrX:131623044..131623089,-!p1@MBNL3!1.17!56.70!MBNL3;;chr12:26277956..26277980,-!p1@BHLHE41!1.17!49.41!BHLHE41;;chr2:157189180..157189290,-!p1@NR4A2!1.16!70.36!NR4A2;;chr17:41623692..41623715,-!p1@ETV4!1.15!56.14!ETV4;;chr6:10412600..10412637,-!p1@TFAP2A!1.15!22.08!TFAP2A;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.15!13.29!EN2;;chr11:34645791..34645836,+!p3@EHF!1.15!13.29!EHF;;chr14:75745523..75745537,+!p1@FOS!1.14!1510.79!FOS;;chr17:38020392..38020477,-!p1@IKZF3!1.14!12.91!IKZF3;;chr6:10415276..10415341,-!p2@TFAP2A!1.13!15.35!TFAP2A;;chr1:158985469..158985489,+!p7@IFI16!1.11!14.04!IFI16;;chr1:53925386..53925397,+!p4@DMRTB1!1.11!11.98!DMRTB1;;chr1:53925516..53925575,+!p1@DMRTB1!1.10!11.60!DMRTB1;;chr2:242556880..242556899,-!p5@THAP4!1.10!11.60!THAP4;;chr11:31832658..31832681,-!p1@PAX6!1.10!11.60!PAX6;;chr17:46687935..46687950,-!p3@HOXB7!1.09!11.42!HOXB7;;chr7:27219833..27219845,-!p7@HOXA10!1.07!10.85!HOXA10;;chr20:18038521..18038571,-!p1@OVOL2!1.06!10.48!OVOL2;;chr2:239148671..239148686,-!p1@HES6!1.05!37.62!HES6;;chr11:65554563..65554576,+!p2@OVOL1!1.05!10.29!OVOL1;;chr1:3569072..3569093,+!p1@TP73!1.05!10.29!TP73;;chr20:22564895..22564910,-!p1@FOXA2!1.05!10.11!FOXA2;;chr3:119500941..119500961,+!p1@NR1I2!1.05!10.11!NR1I2;;chr12:100897130..100897149,+!p3@NR1H4!1.04!9.92!NR1H4;;chr14:38064429..38064486,-!p1@FOXA1!1.04!9.92!FOXA1;;chr3:12329358..12329393,+!p3@PPARG!1.03!24.33!PPARG;;chr3:12329397..12329433,+!p2@PPARG!1.03!22.46!PPARG;;chr19:1753498..1753519,+!p1@ONECUT3!1.03!9.73!ONECUT3;;chr6:10413188..10413249,-!p7@TFAP2A!1.03!9.73!TFAP2A;;chr20:43029862..43029900,+!p1@HNF4A!1.02!9.54!HNF4A;;chr17:46703212..46703238,-!p2@HOXB9!1.02!9.36!HOXB9;;chr19:45971246..45971265,+!p1@FOSB!1.00!169.18!FOSB;;chr1:2461692..2461710,-!p1@HES5!1.00!8.98!HES5;;chr7:27190547..27190591,-!p1@HOXA6!0.98!8.61!HOXA6;;chr5:134369879..134369898,-!p2@PITX1!0.97!8.23!PITX1;;chr19:53496768..53496799,-!p1@ZNF702P!0.95!12.35!ZNF702P;;chr6:36355513..36355578,-!p2@ETV7!0.95!10.11!ETV7;;chr13:28494130..28494168,+!p1@PDX1!0.95!7.86!PDX1;;chr7:138666053..138666146,-!p1@KIAA1549!0.94!32.94!KIAA1549;;chr22:42229210..42229229,+!p3@SREBF2!0.93!18.15!SREBF2;;chr5:50679228..50679288,+!p1@ISL1!0.93!7.49!ISL1;;chr8:76319850..76319870,+!p4@HNF4G!0.93!7.49!HNF4G;;chr1:6479968..6479986,-!p1@HES2!0.93!7.49!HES2;;chr21:38071430..38071456,+!p1@SIM2!0.93!7.49!SIM2;;chr7:27224842..27224872,-!p1@HOXA11!0.92!7.30!HOXA11;;chr8:41508327..41508355,-!p1@NKX6-3!0.92!7.30!NKX6-3;;chr1:61548225..61548299,+!p1@NFIA!0.91!96.56!NFIA;;chr7:73038867..73038878,-!p2@MLXIPL!0.90!6.92!MLXIPL;;chr12:121416340..121416360,+!p1@HNF1A!0.90!6.92!HNF1A;;chr6:126240380..126240430,+!p2@NCOA7!0.89!18.34!NCOA7;;chr2:157199008..157199023,-!p3@NR4A2!0.88!14.22!NR4A2;;chr19:45260775..45260838,+!p5@BCL3!0.88!8.61!BCL3;;chr10:8095593..8095625,+!p3@GATA3!0.88!7.86!GATA3;;chr10:135122868..135122893,+!p3@ZNF511!0.88!6.55!ZNF511;;chr1:23857325..23857416,-!p2@E2F2!0.87!7.49!E2F2;;chr1:209979411..209979433,-!p2@IRF6!0.87!6.36!IRF6;;chr2:63277948..63277974,+!p1@OTX1!0.87!6.36!OTX1;;chr12:26277929..26277955,-!p3@BHLHE41!0.86!9.17!BHLHE41;;chr17:41623667..41623682,-!p8@ETV4!0.86!6.74!ETV4;;chr2:242556900..242556916,-!p6@THAP4!0.86!6.18!THAP4;;chr3:193853927..193853944,+!p1@HES1!0.84!207.73!HES1;;chr18:19749386..19749404,+!p2@GATA6!0.83!8.42!GATA6;;chr2:101436564..101436647,+!p1@NPAS2!0.82!122.95!NPAS2;;chr17:41277372..41277418,-!p1@BRCA1!0.82!21.71!BRCA1;;chr3:71632864..71632885,-!p4@FOXP1!0.81!19.65!FOXP1;;chr2:46524897..46524911,+!p2@EPAS1!0.81!16.28!EPAS1;;chr17:46655730..46655791,-!p1@HOXB4!0.81!14.41!HOXB4;;chr17:7197911..7197964,-!p1@YBX2!0.81!5.43!YBX2;;chr11:615570..615721,-!p2@IRF7!0.80!11.04!IRF7;;chr17:41623259..41623278,-!p7@ETV4!0.80!6.36!ETV4;;chr14:37131058..37131139,+!p1@PAX9!0.78!5.05!PAX9;;chr6:34524093..34524135,-!p1@SPDEF!0.78!5.05!SPDEF;;chr7:96635178..96635181,+!p1@DLX6!0.78!5.05!DLX6;;chr3:141087144..141087170,+!p11@ZBTB38!0.77!6.36!ZBTB38;;chr1:158985457..158985468,+!p12@IFI16!0.77!4.87!IFI16;;chr1:53925410..53925424,+!p3@DMRTB1!0.77!4.87!DMRTB1;;chr18:19749504..19749515,+!p5@GATA6!0.77!4.87!GATA6;;chr7:27224795..27224840,-!p2@HOXA11!0.77!4.87!HOXA11;;chr8:102504979..102505010,+!p2@GRHL2!0.77!4.87!GRHL2;;chr10:114710098..114710130,+!p2@TCF7L2!0.75!37.99!TCF7L2;;chr12:26277817..26277863,-!p2@BHLHE41!0.75!6.55!BHLHE41;;chr7:17338266..17338282,+!p1@AHR!0.74!53.90!AHR;;chr12:48298765..48298783,-!p2@VDR!0.74!10.11!VDR;;chr5:180288373..180288380,-!p5@ZFP62!0.74!4.49!ZFP62;;chr7:96634878..96634900,+!p2@DLX6!0.74!4.49!DLX6;;chr7:17338239..17338262,+!p2@AHR!0.73!36.12!AHR;;chr6:126240356..126240379,+!p7@NCOA7!0.73!5.43!NCOA7;;chr12:115121962..115121987,-!p1@TBX3!0.72!40.05!TBX3;;chr7:26191809..26191890,+!p1@NFE2L3!0.72!23.58!NFE2L3;;chr12:27485823..27485868,+!p2@ARNTL2!0.72!19.09!ARNTL2;;chr3:32023232..32023273,+!p1@ZNF860!0.72!6.36!ZNF860;;chr11:47279248..47279264,+!p3@NR1H3!0.72!4.87!NR1H3;;chr2:63277978..63277995,+!p2@OTX1!0.72!4.30!OTX1;;chr21:38071462..38071474,+!p3@SIM2!0.72!4.30!SIM2;;chr17:46806067..46806097,-!p1@HOXB13!0.72!4.30!HOXB13;;chr5:76383133..76383186,-!p2@ZBED3!0.71!9.17!ZBED3;;chr12:54378923..54378966,+!p1@HOXC10!0.71!4.12!HOXC10;;chr12:54380036..54380091,+!p4@HOXC10!0.71!4.12!HOXC10;;chr2:8822176..8822196,+!p1@ID2!0.70!644.32!ID2;;chr20:55204351..55204377,+!p1@TFAP2C!0.70!5.24!TFAP2C;;chr12:53774567..53774658,+!p2@SP1!0.69!21.52!SP1;;chr1:47903709..47903764,+!p1@BC169308!0.69!4.49!FOXD2;;chr1:10856639..10856662,-!p2@CASZ1!0.69!3.93!CASZ1;;chr16:67198633..67198671,+!p1@HSF4!0.69!3.93!HSF4;;chr18:55102628..55102646,+!p2@ONECUT2!0.69!3.93!ONECUT2;;chr7:137620650..137620677,-!p3@CREB3L2!0.69!3.93!CREB3L2;;chr2:113977697..113977733,-!p6@PAX8!0.69!3.93!PAX8;;chr12:26278008..26278024,-!p4@BHLHE41!0.68!4.68!BHLHE41;;chr18:55102598..55102623,+!p1@ONECUT2!0.68!3.74!ONECUT2;;chr1:10856694..10856715,-!p3@CASZ1!0.68!3.74!CASZ1;;chr7:137620684..137620711,-!p4@CREB3L2!0.68!3.74!CREB3L2;;chr7:27219849..27219867,-!p6@HOXA10!0.68!3.74!HOXA10;;chr7:27239703..27239715,-!p1@HOXA13!0.68!3.74!HOXA13;;chr13:41593425..41593480,-!p1@ELF1!0.67!26.76!ELF1;;chr12:48298785..48298828,-!p1@VDR!0.67!22.27!VDR;;chr8:71316428..71316459,-!p2@NCOA2!0.67!6.55!NCOA2;;chr19:17356189..17356221,-!p2@NR2F6!0.66!6.36!NR2F6;;chr1:158985493..158985535,+!p4@IFI16!0.66!5.80!IFI16;;chr1:10856665..10856683,-!p4@CASZ1!0.66!3.56!CASZ1;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.56!HOXA7;;chr12:2986275..2986363,-!p1@FOXM1!0.65!40.98!FOXM1;;chr5:92918894..92918912,+!p2@NR2F1!0.65!12.91!NR2F1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.65!8.23!ZNF395;;chr17:70117153..70117174,+!p1@SOX9!0.64!40.42!SOX9;;chr11:64764435..64764449,-!p1@BATF2!0.64!4.87!BATF2;;chr2:10091815..10091864,+!p1@GRHL1!0.64!4.68!GRHL1;;chr12:54380404..54380433,+!p3@HOXC10!0.64!3.37!HOXC10;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.64!3.37!HOXC5;;chr18:45663490..45663528,-!p2@ZBTB7C!0.64!3.37!ZBTB7C;;chr1:3569101..3569115,+!p2@TP73!0.64!3.37!TP73;;chr6:152128810..152128827,+!p2@ESR1!0.64!3.37!ESR1;;chr7:27239740..27239759,-!p2@HOXA13!0.64!3.37!HOXA13;;chr8:37553292..37553317,+!p1@ZNF703!0.63!91.89!ZNF703;;chr4:47916543..47916580,-!p2@NFXL1!0.63!12.54!NFXL1;;chr4:38665866..38665878,+!p4@KLF3!0.63!11.98!KLF3;;chr1:23857698..23857733,-!p1@E2F2!0.63!6.55!E2F2;;chr3:168864315..168864339,-!p2@MECOM!0.63!5.80!MECOM;;chr5:137804405..137804444,+!p3@EGR1!0.63!4.12!EGR1;;chr8:145669791..145669834,-!p1@TONSL!0.62!10.48!TONSL;;chr8:28243813..28243839,-!p4@ZNF395!0.62!6.18!ZNF395;;chr7:73038889..73038905,-!p3@MLXIPL!0.62!3.18!MLXIPL;;chr3:12329339..12329356,+!p5@PPARG!0.62!3.18!PPARG;;chr2:43453734..43453751,-!p1@ZFP36L2!0.61!399.36!ZFP36L2;;chr17:17740287..17740307,-!p1@SREBF1!0.61!97.69!SREBF1;;chr22:42229246..42229270,+!p2@SREBF2!0.61!46.41!SREBF2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.61!32.38!PPP1R13L;;chr8:28243934..28243993,-!p3@ZNF395!0.61!9.73!ZNF395;;chr11:19263160..19263176,-!p1@E2F8!0.61!3.74!E2F8;;chr20:42295745..42295765,+!p1@MYBL2!0.60!58.57!MYBL2;;chr4:38665883..38665922,+!p3@KLF3!0.60!13.10!KLF3;;chr1:40367530..40367597,-!p1@MYCL1!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|expression_enrichment_score=chr6:1312325..1312340,+!p1@FOXQ1!2.25!278.47!FOXQ1;;chr11:34642612..34642646,+!p1@EHF!2.14!136.05!EHF;;chr1:201979743..201979762,+!p1@ELF3!2.10!123.70!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.94!86.46!ELF3;;chr3:12330560..12330579,+!p1@PPARG!1.91!91.32!PPARG;;chr1:53925063..53925076,+!p2@DMRTB1!1.88!74.48!DMRTB1;;chr8:76319876..76319926,+!p1@HNF4G!1.77!57.27!HNF4G;;chr7:73038839..73038862,-!p1@MLXIPL!1.76!56.52!MLXIPL;;chr20:42984330..42984364,+!p2@HNF4A!1.63!41.55!HNF4A;;chr10:48355030..48355090,+!p1@ZNF488!1.57!46.22!ZNF488;;chr17:46682321..46682362,-!p1@HOXB6!1.56!35.37!HOXB6;;chr1:151804244..151804310,-!p1@RORC!1.50!30.50!RORC;;chr12:52445218..52445237,+!p1@NR4A1!1.47!345.65!NR4A1;;chr13:73633131..73633149,+!p1@KLF5!1.47!292.31!KLF5;;chr8:11561684..11561751,+!p1@GATA4!1.46!27.70!GATA4;;chr6:135502501..135502546,+!p1@MYB!1.43!31.07!MYB;;chr17:17726907..17726958,-!p2@SREBF1!1.41!148.22!SREBF1;;chr19:33793430..33793447,-!p1@CEBPA!1.41!102.37!CEBPA;;chr11:34642656..34642667,+!p2@EHF!1.40!24.33!EHF;;chr8:102504651..102504683,+!p1@GRHL2!1.39!23.58!GRHL2;;chr3:169381420..169381535,-!p1@MECOM!1.38!26.57!MECOM;;chr16:85932760..85932775,+!p1@IRF8!1.36!21.71!IRF8;;chr1:209979467..209979494,-!p1@IRF6!1.34!23.21!IRF6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.34!20.77!TFCP2L1;;chr17:46687959..46688007,-!p2@HOXB7!1.31!26.39!HOXB7;;chr11:65554528..65554546,+!p1@OVOL1!1.29!18.53!OVOL1;;chr18:19749541..19749557,+!p1@GATA6!1.28!56.33!GATA6;;chr13:28543285..28543314,-!p2@CDX2!1.28!18.15!CDX2;;chr10:135122906..135122921,+!p4@ZNF511!1.25!16.84!ZNF511;;chr6:10415484..10415508,-!p3@TFAP2A!1.22!15.53!TFAP2A;;chr11:61520075..61520136,+!p1@C11orf9!1.21!32.00!C11orf9;;chr18:19749517..19749531,+!p3@GATA6!1.21!26.76!GATA6;;chr7:96634850..96634874,+!p3@DLX6!1.20!14.97!DLX6;;chr5:134369905..134369972,-!p1@PITX1!1.18!21.71!PITX1;;chr7:156803329..156803362,-!p1@MNX1!1.18!14.04!MNX1;;chrX:131623044..131623089,-!p1@MBNL3!1.17!56.70!MBNL3;;chr12:26277956..26277980,-!p1@BHLHE41!1.17!49.41!BHLHE41;;chr2:157189180..157189290,-!p1@NR4A2!1.16!70.36!NR4A2;;chr17:41623692..41623715,-!p1@ETV4!1.15!56.14!ETV4;;chr6:10412600..10412637,-!p1@TFAP2A!1.15!22.08!TFAP2A;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!1.15!13.29!EN2;;chr11:34645791..34645836,+!p3@EHF!1.15!13.29!EHF;;chr14:75745523..75745537,+!p1@FOS!1.14!1510.79!FOS;;chr17:38020392..38020477,-!p1@IKZF3!1.14!12.91!IKZF3;;chr6:10415276..10415341,-!p2@TFAP2A!1.13!15.35!TFAP2A;;chr1:158985469..158985489,+!p7@IFI16!1.11!14.04!IFI16;;chr1:53925386..53925397,+!p4@DMRTB1!1.11!11.98!DMRTB1;;chr1:53925516..53925575,+!p1@DMRTB1!1.10!11.60!DMRTB1;;chr2:242556880..242556899,-!p5@THAP4!1.10!11.60!THAP4;;chr11:31832658..31832681,-!p1@PAX6!1.10!11.60!PAX6;;chr17:46687935..46687950,-!p3@HOXB7!1.09!11.42!HOXB7;;chr7:27219833..27219845,-!p7@HOXA10!1.07!10.85!HOXA10;;chr20:18038521..18038571,-!p1@OVOL2!1.06!10.48!OVOL2;;chr2:239148671..239148686,-!p1@HES6!1.05!37.62!HES6;;chr11:65554563..65554576,+!p2@OVOL1!1.05!10.29!OVOL1;;chr1:3569072..3569093,+!p1@TP73!1.05!10.29!TP73;;chr20:22564895..22564910,-!p1@FOXA2!1.05!10.11!FOXA2;;chr3:119500941..119500961,+!p1@NR1I2!1.05!10.11!NR1I2;;chr12:100897130..100897149,+!p3@NR1H4!1.04!9.92!NR1H4;;chr14:38064429..38064486,-!p1@FOXA1!1.04!9.92!FOXA1;;chr3:12329358..12329393,+!p3@PPARG!1.03!24.33!PPARG;;chr3:12329397..12329433,+!p2@PPARG!1.03!22.46!PPARG;;chr19:1753498..1753519,+!p1@ONECUT3!1.03!9.73!ONECUT3;;chr6:10413188..10413249,-!p7@TFAP2A!1.03!9.73!TFAP2A;;chr20:43029862..43029900,+!p1@HNF4A!1.02!9.54!HNF4A;;chr17:46703212..46703238,-!p2@HOXB9!1.02!9.36!HOXB9;;chr19:45971246..45971265,+!p1@FOSB!1.00!169.18!FOSB;;chr1:2461692..2461710,-!p1@HES5!1.00!8.98!HES5;;chr7:27190547..27190591,-!p1@HOXA6!0.98!8.61!HOXA6;;chr5:134369879..134369898,-!p2@PITX1!0.97!8.23!PITX1;;chr19:53496768..53496799,-!p1@ZNF702P!0.95!12.35!ZNF702P;;chr6:36355513..36355578,-!p2@ETV7!0.95!10.11!ETV7;;chr13:28494130..28494168,+!p1@PDX1!0.95!7.86!PDX1;;chr7:138666053..138666146,-!p1@KIAA1549!0.94!32.94!KIAA1549;;chr22:42229210..42229229,+!p3@SREBF2!0.93!18.15!SREBF2;;chr5:50679228..50679288,+!p1@ISL1!0.93!7.49!ISL1;;chr8:76319850..76319870,+!p4@HNF4G!0.93!7.49!HNF4G;;chr1:6479968..6479986,-!p1@HES2!0.93!7.49!HES2;;chr21:38071430..38071456,+!p1@SIM2!0.93!7.49!SIM2;;chr7:27224842..27224872,-!p1@HOXA11!0.92!7.30!HOXA11;;chr8:41508327..41508355,-!p1@NKX6-3!0.92!7.30!NKX6-3;;chr1:61548225..61548299,+!p1@NFIA!0.91!96.56!NFIA;;chr7:73038867..73038878,-!p2@MLXIPL!0.90!6.92!MLXIPL;;chr12:121416340..121416360,+!p1@HNF1A!0.90!6.92!HNF1A;;chr6:126240380..126240430,+!p2@NCOA7!0.89!18.34!NCOA7;;chr2:157199008..157199023,-!p3@NR4A2!0.88!14.22!NR4A2;;chr19:45260775..45260838,+!p5@BCL3!0.88!8.61!BCL3;;chr10:8095593..8095625,+!p3@GATA3!0.88!7.86!GATA3;;chr10:135122868..135122893,+!p3@ZNF511!0.88!6.55!ZNF511;;chr1:23857325..23857416,-!p2@E2F2!0.87!7.49!E2F2;;chr1:209979411..209979433,-!p2@IRF6!0.87!6.36!IRF6;;chr2:63277948..63277974,+!p1@OTX1!0.87!6.36!OTX1;;chr12:26277929..262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395,+!p1@CREB3L4!0.21!5.24!CREB3L4;;chr19:44439420..44439447,-!p1@ZNF45!0.21!4.68!ZNF45;;chr19:8942962..8942987,-!p1@ZNF558!0.21!3.18!ZNF558;;chr1:8877735..8877760,-!p8@RERE!0.21!3.18!RERE;;chr12:27485762..27485776,+!p3@ARNTL2!0.21!3.18!ARNTL2;;chr11:58346585..58346607,+!p2@ZFP91!0.21!2.62!ZFP91;;chr9:14314522..14314556,-!p3@NFIB!0.21!2.62!NFIB;;chr8:145159324..145159333,+!p5@MAF1!0.21!2.25!MAF1;;chr15:31619535..31619569,+!p5@KLF13!0.21!1.87!KLF13;;chr18:3448455..3448480,+!p5@TGIF1!0.21!1.87!TGIF1;;chr18:32924431..32924440,-!p2@ZNF24!0.21!1.68!ZNF24;;chr18:3451584..3451606,+!p12@TGIF1!0.21!1.68!TGIF1;;chr7:148844581..148844606,+!p2@ZNF398!0.21!1.68!ZNF398;;chr8:124286670..124286702,-!p3@ZHX1!0.21!1.68!ZHX1;;chr1:61547811..61547837,+!p7@NFIA!0.21!1.31!NFIA;;chr19:24216201..24216212,+!p4@ZNF254!0.21!1.12!ZNF254;;chr15:37392593..37392607,-!p13@MEIS2!0.21!0.94!MEIS2;;chr22:29196511..29196541,-!p1@XBP1!0.20!162.06!XBP1;;chr13:114238997..114239077,+!p1@TFDP1!0.20!72.05!TFDP1;;chr10:135122380..135122458,+!p1@ZNF511!0.20!43.60!ZNF511;;chr8:41909496..41909512,-!p1@KAT6A!0.20!43.23!KAT6A;;chr6:32157947..32157992,-!p1@PBX2!0.20!23.95!PBX2;;chr12:11802600..11802685,+!p1@ETV6!0.20!21.33!ETV6;;chr1:67395922..67395976,+!p2@MIER1!0.20!13.29!MIER1;;chr7:44925044..44925156,-!p1@PURB!0.20!10.67!PURB;;chr17:80477643..80477678,+!p2@FOXK2!0.20!8.23!FOXK2;;chr5:180288248..180288291,-!p1@ZFP62!0.20!8.05!ZFP62;;chr6:7107999..7108031,+!p2@RREB1!0.20!6.92!RREB1;;chr7:5085480..5085510,+!p1@RBAK!0.20!5.80!RBAK;;chr16:68119324..68119364,+!p1@NFATC3!0.20!5.61!NFATC3;;chr2:95831389..95831432,-!p1@ZNF514!0.20!5.43!ZNF514;;chr12:54019757..54019804,-!p2@ATF7!0.20!4.87!ATF7;;chr4:4291837..4291859,-!p2@LYAR!0.20!3.93!LYAR;;chr16:3285049..3285081,-!p3@ZNF200!0.20!2.43!ZNF200;;chr1:61548374..61548415,+!p4@NFIA!0.20!1.87!NFIA;;chr17:17723702..17723721,-!p7@SREBF1!0.20!0.94!SREBF1;;chr12:57505581..57505598,-!p4@STAT6!0.20!0.94!STAT6;;chr7:92076714..92076729,+!p2@GATAD1!0.20!0.94!GATAD1;;chr1:26496382..26496457,+!p1@ZNF593!0.19!84.40!ZNF593;;chr14:75894714..75894733,+!p1@JDP2!0.19!39.49!JDP2;;chr4:185395672..185395710,-!p1@IRF2!0.19!36.87!IRF2;;chr19:45251943..45252006,+!p1@BCL3!0.19!36.31!BCL3;;chr19:9695169..9695188,-!p1@ZNF121!0.19!23.95!ZNF121;;chr20:39946279..39946356,-!p1@ZHX3!0.19!21.33!ZHX3;;chr11:3400340..3400422,-!p1@ZNF195!0.19!21.33!ZNF195;;chr19:17356697..17356762,-!p1@NR2F6!0.19!18.53!NR2F6;;chr8:28747884..28747938,+!p1@HMBOX1!0.19!17.22!HMBOX1;;chr4:26322419..26322479,+!p2@RBPJ!0.19!16.28!RBPJ;;chr16:3450963..3451019,-!p1@ZNF434!0.19!8.05!ZNF434;;chr9:3525968..3526016,-!p1@RFX3!0.19!7.30!RFX3;;chr1:205601000..205601055,-!p2@ELK4!0.19!5.05!ELK4;;chr19:44439387..44439419,-!p2@ZNF45!0.19!4.49!ZNF45;;chr4:41992565..41992580,+!p2@SLC30A9!0.19!4.30!SLC30A9;;chr1:67396044..67396071,+!p3@MIER1!0.19!4.12!MIER1;;chr19:23870007..23870022,-!p2@ZNF675!0.19!3.74!ZNF675;;chr3:5021191..5021202,+!p3@BHLHE40!0.19!2.99!BHLHE40;;chr1:226595726..226595737,-!p2@PARP1!0.19!2.62!PARP1;;chr1:249153232..249153251,-!p2@ZNF692!0.19!2.43!ZNF692;;chrX:70315688..70315709,+!p1@FOXO4!0.19!2.43!FOXO4;;chr10:44101902..44101932,+!p2@ZNF485!0.19!2.06!ZNF485;;chr10:64576105..64576133,-!p1@EGR2!0.19!2.06!EGR2;;chr11:130184311..130184362,-!p4@ZBTB44!0.19!1.68!ZBTB44;;chr17:40719073..40719080,+!p2@MLX!0.19!1.68!MLX;;chr16:68119440..68119480,+!p4@NFATC3!0.19!1.50!NFATC3;;chr9:110252074..110252079,-!p3@KLF4!0.19!1.50!KLF4;;chr15:74833547..74833567,+!p2@ARID3B!0.19!1.12!ARID3B;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.19!0.94!PRDM11;;chr2:157198760..157198762,-!p5@NR4A2!0.19!0.94!NR4A2;;chr22:21355865..21355886,-!p5@THAP7!0.19!0.75!THAP7;;chr12:57914481..57914509,+!p5@MBD6!0.19!0.75!MBD6;;chr13:37393324..37393335,+!p2@RFXAP!0.19!0.75!RFXAP;;chr14:61116168..61116180,-!p2@SIX1!0.19!0.75!SIX1;;chr11:64073314..64073351,+!p5@ESRRA!0.19!0.56!ESRRA;;chr11:76092029..76092038,-!p4@PRKRIR!0.19!0.56!PRKRIR;;chr12:115122262..115122271,-!p7@TBX3!0.19!0.56!TBX3;;chr12:3068668..3068689,+!p7@TEAD4!0.19!0.56!TEAD4;;chr12:52448213..52448262,+!p6@NR4A1!0.19!0.56!NR4A1;;chr13:28541455..28541475,-!p7@CDX2!0.19!0.56!CDX2;;chr13:73636310..73636330,+!p5@KLF5!0.19!0.56!KLF5;;chr14:105267423..105267443,+!p2@ZBTB42!0.19!0.56!ZBTB42;;chr14:38064590..38064606,-!p2@FOXA1!0.19!0.56!FOXA1;;chr14:75746705..75746720,+!p8@FOS!0.19!0.56!FOS;;chr14:75747250..75747267,+!p5@FOS!0.19!0.56!FOS;;chr14:99738138..99738163,-!p1@BCL11B!0.19!0.56!BCL11B;;chr17:40441354..40441410,+!p2@STAT5A!0.19!0.56!STAT5A;;chr17:41622731..41622764,-!p5@ETV4!0.19!0.56!ETV4;;chr17:46682368..46682373,-!p12@HOXB6!0.19!0.56!HOXB6;;chr19:16435423..16435484,+!p5@KLF2!0.19!0.56!KLF2;;chr9:14180778..14180808,-!p15@NFIB!0.19!0.56!NFIB;;chrX:84499056..84499078,+!p3@ZNF711!0.19!0.56!ZNF711;;chr5:134369222..134369237,-!p8@PITX1!0.19!0.56!PITX1;;chr6:10412477..10412490,-!p10@TFAP2A!0.19!0.56!TFAP2A;;chr6:106546786..106546802,+!p6@PRDM1!0.19!0.56!PRDM1;;chr6:134210243..134210257,+!p1@TCF21!0.19!0.56!TCF21;;chr6:135516978..135516993,+!p7@MYB!0.19!0.56!MYB;;chr6:152129265..152129276,+!p13@ESR1!0.19!0.56!ESR1;;chr6:41040905..41040916,+!p4@NFYA!0.19!0.56!NFYA;;chr7:27179852..27179863,-!p10@HOXA3!0.19!0.56!HOXA3;;chr8:123793688..123793703,+!p12@ZHX2!0.19!0.56!ZHX2;;chr8:145701166..145701187,-!p2@FOXH1!0.19!0.56!FOXH1;;chr8:28243743..28243752,-!p10@ZNF395!0.19!0.56!ZNF395;;chr9:102584278..102584285,+!p5@NR4A3!0.19!0.56!NR4A3;;chr9:115819058..115819082,-!p2@ZFP37!0.19!0.56!ZFP37;;chr2:10091922..10091935,+!p3@GRHL1!0.19!0.56!GRHL1;;chr2:113994526..113994556,-!p3@PAX8!0.19!0.56!PAX8;;chr2:73144668..73144679,+!p5@EMX1!0.19!0.56!EMX1;;chr2:95825586..95825609,-!p4@ZNF514!0.19!0.56!ZNF514;;chr3:14058640..14058664,+!p9@TPRXL!0.19!0.56!TPRXL;;chr3:168865364..168865376,-!p11@MECOM!0.19!0.56!MECOM;;chr3:24536332..24536358,-!p2@THRB!0.19!0.56!THRB;;chr4:103422811..103422822,+!p11@NFKB1!0.19!0.56!NFKB1;;chr4:103423120..103423142,+!p8@NFKB1!0.19!0.56!NFKB1;;chr4:146402827..146402839,+!p10@SMAD1!0.19!0.56!SMAD1;;chr4:149363475..149363492,-!p2@NR3C2!0.19!0.56!NR3C2;;chr4:47916504..47916515,-!p6@NFXL1!0.19!0.56!NFXL1;;chr19:45978178..45978185,+!p23@FOSB!0.19!0.56!FOSB;;chr19:54041508..54041527,+!p8@ZNF331!0.19!0.56!ZNF331;;chr1:154975229..154975247,+!p6@ZBTB7B!0.19!0.56!ZBTB7B;;chr1:158985686..158985719,+!p15@IFI16!0.19!0.56!IFI16;;chr1:217262933..217262968,-!p3@ESRRG!0.19!0.56!ESRRG;;chr1:2985760..2985774,+!p1@PRDM16!0.19!0.56!PRDM16;;chr20:18037473..18037494,-!p3@OVOL2!0.19!0.56!OVOL2;;chr15:42783305..42783348,-!p1@ZFP106!0.18!21.15!ZFP106;;chr16:29817665..29817719,+!p3@MAZ!0.18!20.21!MAZ;;chr19:36705998..36706021,+!p2@ZNF146!0.18!19.28!ZNF146;;chr20:50808290..50808328,-!p1@ZFP64!0.18!15.35!ZFP64;;chr16:29817617..29817664,+!p4@MAZ!0.18!13.66!MAZ;;chr6:41514305..41514359,+!p2@FOXP4!0.18!10.67!FOXP4;;chr7:64023441..64023462,-!p1@ZNF680!0.18!10.29!ZNF680;;chr9:20622478..20622525,-!p1@MLLT3!0.18!10.11!MLLT3;;chr16:4322832..4322907,-!p1@TFAP4!0.18!9.73!TFAP4;;chr14:55493763..55493824,-!p1@WDHD1!0.18!9.54!WDHD1;;chr1:27022164..27022220,+!p2@ARID1A!0.18!9.36!ARID1A;;chr2:61108695..61108753,+!p1@REL!0.18!8.80!REL;;chr6:43138999..43139017,+!p2@SRF!0.18!7.49!SRF;;chr19:35759473..35759521,+!p3@USF2!0.18!7.30!USF2;;chr18:45456930..45456967,-!p2@SMAD2!0.18!6.92!SMAD2;;chr6:43139041..43139094,+!p3@SRF!0.18!6.92!SRF;;chr9:32552577..32552627,-!p1@TOPORS!0.18!6.36!TOPORS;;chr19:40596828..40596855,-!p1@ZNF780A!0.18!5.05!ZNF780A;;chr14:61116183..61116208,-!p1@SIX1!0.18!4.49!SIX1;;chr21:27107726..27107772,+!p4@GABPA!0.18!3.56!GABPA;;chr19:18392250..18392260,-!p4@JUND!0.18!3.56!JUND;;chr1:59249645..59249656,-!p4@JUN!0.18!2.62!JUN;;chr8:48650982..48651023,-!p3@CEBPD!0.18!2.62!CEBPD;;chr17:36861675..36861697,+!p3@MLLT6!0.18!2.43!MLLT6;;chr4:76439649..76439662,+!p2@THAP6!0.18!2.43!THAP6;;chr11:7041554..7041602,-!p1@ZNF214!0.18!1.87!ZNF214;;chr8:116681150..116681164,-!p5@TRPS1!0.18!1.87!TRPS1;;chr13:45151509..45151539,-!p6@TSC22D1!0.18!1.50!TSC22D1;;chr14:103059006..103059017,+!p2@RCOR1!0.18!1.31!RCOR1;;chr2:169312600..169312606,+!p2@CERS6!0.18!1.31!CERS6;;chr14:24020938..24020988,-!p1@ZFHX2!0.18!1.12!ZFHX2;;chr7:152133109..152133116,-!p2@MLL3!0.18!0.94!MLL3;;chr13:27998720..27998826,+!p1@GTF3A!0.17!125.38!GTF3A;;chr4:4291861..4291913,-!p1@LYAR!0.17!30.13!LYAR;;chr2:48541789..48541874,+!p1@FOXN2!0.17!29.57!FOXN2;;chr4:95128748..95128794,+!p1@SMARCAD1!0.17!16.09!SMARCAD1;;chr18:48494379..48494426,+!p1@ELAC1,p2@SMAD4!0.17!14.22!SMAD4;;chr7:77428149..77428220,+!p1@PHTF2!0.17!12.73!PHTF2;;chr6:31126291..31126399,+!p1@TCF19!0.17!12.16!TCF19;;chr6:35310312..35310359,+!p1@PPARD!0.17!11.60!PPARD;;chr7:6676943..6676984,+!p1@ENST00000427912!0.17!11.60!ZNF316;;
Line 37: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/adenocarcinoma%2520cell%2520line%253aIM95m.CNhs11882.10796-110I4.hg38.nobarcode.ctss.bed.gz
|id=FF:10796-110I4
|id=FF:10796-110I4
|is_a=EFO:0002091;;FF:0000210;;FF:0100167
|is_a=EFO:0002091;;FF:0000210;;FF:0100167
|is_obsolete=
|is_obsolete=
|library_id=CNhs11882
|library_id_phase_based=2:CNhs11882
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10796
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10796
|name=adenocarcinoma cell line:IM95m
|name=adenocarcinoma cell line:IM95m
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11882,LSID830,release010,COMPLETED
|profile_hcage=CNhs11882,LSID830,release010,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 60: Line 78:
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|sample_cell_line=IM95m
Line 82: Line 102:
|top_motifs=ZEB1:2.47400392585;HNF4A_NR2F1,2:2.34888053219;HNF1A:2.28806688633;SNAI1..3:2.15221118992;HOX{A6,A7,B6,B7}:1.81456950948;LMO2:1.70765597196;VSX1,2:1.69825512537;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.0166973959;NFY{A,B,C}:1.01097929983;ONECUT1,2:0.95233817632;ZNF148:0.890880623365;NR5A1,2:0.890773032726;RBPJ:0.88509657476;MYB:0.879544141167;CDX1,2,4:0.828567971028;ELK1,4_GABP{A,B1}:0.714969945247;E2F1..5:0.706814588843;XCPE1{core}:0.680258980624;ADNP_IRX_SIX_ZHX:0.643682476522;MYOD1:0.627074506715;FOXN1:0.598392142358;ESRRA:0.595828245718;FOXQ1:0.521597234206;POU6F1:0.509875426317;SP1:0.508025416508;PPARG:0.475357814087;PBX1:0.470007792587;RXRA_VDR{dimer}:0.453607490853;GATA6:0.452399946074;DBP:0.431573222839;IRF7:0.430868277974;PAX6:0.414902104966;ATF4:0.40854450089;ZNF143:0.400791246603;MTF1:0.399123347561;NRF1:0.396314846856;bHLH_family:0.394586475345;NR6A1:0.38630547349;BREu{core}:0.380704134191;IKZF1:0.376301280606;POU2F1..3:0.360159218327;FOX{F1,F2,J1}:0.358645161958;ATF5_CREB3:0.345489336756;GFI1:0.34399629714;PAX5:0.315618890565;RORA:0.304317697082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.297296074826;POU5F1:0.275400209276;FOX{I1,J2}:0.264755327254;NANOG:0.260881020262;RFX2..5_RFXANK_RFXAP:0.210824137297;OCT4_SOX2{dimer}:0.178327222144;TP53:0.174727135125;YY1:0.158780888397;HOX{A5,B5}:0.134424737772;TFDP1:0.132664706873;PAX2:0.120732659604;LEF1_TCF7_TCF7L1,2:0.115272120223;STAT1,3:0.0996441506567;ARID5B:0.0919390917398;ZNF423:0.0756242438156;PDX1:0.0748898039494;CRX:0.0742520165319;TLX1..3_NFIC{dimer}:0.048335180033;CEBPA,B_DDIT3:0.0368356206797;FOXM1:0.028703450981;HAND1,2:0.0244033049919;HIF1A:0.0227345881974;PAX1,9:-0.0298609117195;TBX4,5:-0.0317643018167;EBF1:-0.0323661443313;MTE{core}:-0.0327059211509;SOX2:-0.0673999283196;TFAP2B:-0.0852880974456;TEAD1:-0.106440101699;ZFP161:-0.109072927324;FOS_FOS{B,L1}_JUN{B,D}:-0.113797212531;IKZF2:-0.119005260008;FOXD3:-0.119832126835;ELF1,2,4:-0.139204610443;IRF1,2:-0.145740039814;FOX{D1,D2}:-0.146386463824;FOSL2:-0.147804652059;NKX6-1,2:-0.16860300639;MED-1{core}:-0.181293809141;NFE2:-0.197872065003;TFCP2:-0.210290527282;SOX{8,9,10}:-0.214133296154;NKX2-3_NKX2-5:-0.222480794908;BACH2:-0.245671764286;HLF:-0.288134709845;DMAP1_NCOR{1,2}_SMARC:-0.301312002521;CUX2:-0.307034976288;MEF2{A,B,C,D}:-0.317244079001;NHLH1,2:-0.318398901144;NFKB1_REL_RELA:-0.324008142934;HOX{A4,D4}:-0.328745703537;PAX4:-0.336608893272;TFAP2{A,C}:-0.345967542133;HIC1:-0.347450455282;PRRX1,2:-0.35408689639;STAT2,4,6:-0.357790441106;PAX3,7:-0.360530218565;NR1H4:-0.360688354548;ATF6:-0.374610903836;ZBTB6:-0.396587161704;NFE2L2:-0.399971600095;ZBTB16:-0.410446634163;TAL1_TCF{3,4,12}:-0.42687322024;TBP:-0.427682770897;HSF1,2:-0.437413461767;EN1,2:-0.441143882505;ETS1,2:-0.464433387707;TEF:-0.479834693509;RFX1:-0.484503678319;LHX3,4:-0.51463810619;GTF2A1,2:-0.529222180585;CREB1:-0.530069056944;AR:-0.531633772207;GCM1,2:-0.542448080145;NKX3-2:-0.544175226122;REST:-0.546533217079;SPI1:-0.563865266223;PITX1..3:-0.569555096601;FOXP3:-0.581312216123;SPIB:-0.583030744558;FOXL1:-0.590694699325;STAT5{A,B}:-0.603621152942;FOXA2:-0.606222583958;SREBF1,2:-0.62891971017;BPTF:-0.636689558617;MYBL2:-0.644969028669;ESR1:-0.662583243085;SOX17:-0.670599345444;T:-0.685169481657;UFEwm:-0.723254205323;EP300:-0.731376261895;KLF4:-0.734704992462;PAX8:-0.759850963548;RUNX1..3:-0.761486951301;POU3F1..4:-0.763146601596;EVI1:-0.763576171908;SOX5:-0.76396257649;GTF2I:-0.784368065037;HES1:-0.803445048484;NFIX:-0.803613234775;CDC5L:-0.8110583153;NKX2-1,4:-0.811316811236;NKX3-1:-0.842703285189;JUN:-0.852115727529;FOXO1,3,4:-0.864847536143;SRF:-0.881980779753;EGR1..3:-0.882174967129;AHR_ARNT_ARNT2:-0.890429954777;MYFfamily:-0.947360761359;NFIL3:-0.950913304806;HMX1:-0.951090358925;ATF2:-0.987381800456;NANOG{mouse}:-0.991397485045;HOXA9_MEIS1:-1.00934183631;TFAP4:-1.02492465758;MAZ:-1.04291595914;GFI1B:-1.04661411924;RREB1:-1.09880238836;GATA4:-1.10350295132;ZNF384:-1.10843429932;TLX2:-1.12025374178;FOXP1:-1.12503552644;ZIC1..3:-1.14681204112;SPZ1:-1.17477835908;PRDM1:-1.17561355289;HBP1_HMGB_SSRP1_UBTF:-1.18338855083;GZF1:-1.21124058355;POU1F1:-1.24170030319;PATZ1:-1.26279002229;ALX4:-1.28745916716;TOPORS:-1.29961272996;MAFB:-1.32089559521;NKX2-2,8:-1.33167947431;HMGA1,2:-1.36316040604;NFE2L1:-1.3672423535;NR3C1:-1.40847061231;TGIF1:-1.41413733723;AIRE:-1.50399482167;GLI1..3:-1.59096549041;ZNF238:-1.69122023404;ALX1:-1.69753204325;NFATC1..3:-1.71617691505;MZF1:-1.72984156472;XBP1:-2.11050338869;SMAD1..7,9:-2.13569454047;RXR{A,B,G}:-2.41163328779
|top_motifs=ZEB1:2.47400392585;HNF4A_NR2F1,2:2.34888053219;HNF1A:2.28806688633;SNAI1..3:2.15221118992;HOX{A6,A7,B6,B7}:1.81456950948;LMO2:1.70765597196;VSX1,2:1.69825512537;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.0166973959;NFY{A,B,C}:1.01097929983;ONECUT1,2:0.95233817632;ZNF148:0.890880623365;NR5A1,2:0.890773032726;RBPJ:0.88509657476;MYB:0.879544141167;CDX1,2,4:0.828567971028;ELK1,4_GABP{A,B1}:0.714969945247;E2F1..5:0.706814588843;XCPE1{core}:0.680258980624;ADNP_IRX_SIX_ZHX:0.643682476522;MYOD1:0.627074506715;FOXN1:0.598392142358;ESRRA:0.595828245718;FOXQ1:0.521597234206;POU6F1:0.509875426317;SP1:0.508025416508;PPARG:0.475357814087;PBX1:0.470007792587;RXRA_VDR{dimer}:0.453607490853;GATA6:0.452399946074;DBP:0.431573222839;IRF7:0.430868277974;PAX6:0.414902104966;ATF4:0.40854450089;ZNF143:0.400791246603;MTF1:0.399123347561;NRF1:0.396314846856;bHLH_family:0.394586475345;NR6A1:0.38630547349;BREu{core}:0.380704134191;IKZF1:0.376301280606;POU2F1..3:0.360159218327;FOX{F1,F2,J1}:0.358645161958;ATF5_CREB3:0.345489336756;GFI1:0.34399629714;PAX5:0.315618890565;RORA:0.304317697082;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.297296074826;POU5F1:0.275400209276;FOX{I1,J2}:0.264755327254;NANOG:0.260881020262;RFX2..5_RFXANK_RFXAP:0.210824137297;OCT4_SOX2{dimer}:0.178327222144;TP53:0.174727135125;YY1:0.158780888397;HOX{A5,B5}:0.134424737772;TFDP1:0.132664706873;PAX2:0.120732659604;LEF1_TCF7_TCF7L1,2:0.115272120223;STAT1,3:0.0996441506567;ARID5B:0.0919390917398;ZNF423:0.0756242438156;PDX1:0.0748898039494;CRX:0.0742520165319;TLX1..3_NFIC{dimer}:0.048335180033;CEBPA,B_DDIT3:0.0368356206797;FOXM1:0.028703450981;HAND1,2:0.0244033049919;HIF1A:0.0227345881974;PAX1,9:-0.0298609117195;TBX4,5:-0.0317643018167;EBF1:-0.0323661443313;MTE{core}:-0.0327059211509;SOX2:-0.0673999283196;TFAP2B:-0.0852880974456;TEAD1:-0.106440101699;ZFP161:-0.109072927324;FOS_FOS{B,L1}_JUN{B,D}:-0.113797212531;IKZF2:-0.119005260008;FOXD3:-0.119832126835;ELF1,2,4:-0.139204610443;IRF1,2:-0.145740039814;FOX{D1,D2}:-0.146386463824;FOSL2:-0.147804652059;NKX6-1,2:-0.16860300639;MED-1{core}:-0.181293809141;NFE2:-0.197872065003;TFCP2:-0.210290527282;SOX{8,9,10}:-0.214133296154;NKX2-3_NKX2-5:-0.222480794908;BACH2:-0.245671764286;HLF:-0.288134709845;DMAP1_NCOR{1,2}_SMARC:-0.301312002521;CUX2:-0.307034976288;MEF2{A,B,C,D}:-0.317244079001;NHLH1,2:-0.318398901144;NFKB1_REL_RELA:-0.324008142934;HOX{A4,D4}:-0.328745703537;PAX4:-0.336608893272;TFAP2{A,C}:-0.345967542133;HIC1:-0.347450455282;PRRX1,2:-0.35408689639;STAT2,4,6:-0.357790441106;PAX3,7:-0.360530218565;NR1H4:-0.360688354548;ATF6:-0.374610903836;ZBTB6:-0.396587161704;NFE2L2:-0.399971600095;ZBTB16:-0.410446634163;TAL1_TCF{3,4,12}:-0.42687322024;TBP:-0.427682770897;HSF1,2:-0.437413461767;EN1,2:-0.441143882505;ETS1,2:-0.464433387707;TEF:-0.479834693509;RFX1:-0.484503678319;LHX3,4:-0.51463810619;GTF2A1,2:-0.529222180585;CREB1:-0.530069056944;AR:-0.531633772207;GCM1,2:-0.542448080145;NKX3-2:-0.544175226122;REST:-0.546533217079;SPI1:-0.563865266223;PITX1..3:-0.569555096601;FOXP3:-0.581312216123;SPIB:-0.583030744558;FOXL1:-0.590694699325;STAT5{A,B}:-0.603621152942;FOXA2:-0.606222583958;SREBF1,2:-0.62891971017;BPTF:-0.636689558617;MYBL2:-0.644969028669;ESR1:-0.662583243085;SOX17:-0.670599345444;T:-0.685169481657;UFEwm:-0.723254205323;EP300:-0.731376261895;KLF4:-0.734704992462;PAX8:-0.759850963548;RUNX1..3:-0.761486951301;POU3F1..4:-0.763146601596;EVI1:-0.763576171908;SOX5:-0.76396257649;GTF2I:-0.784368065037;HES1:-0.803445048484;NFIX:-0.803613234775;CDC5L:-0.8110583153;NKX2-1,4:-0.811316811236;NKX3-1:-0.842703285189;JUN:-0.852115727529;FOXO1,3,4:-0.864847536143;SRF:-0.881980779753;EGR1..3:-0.882174967129;AHR_ARNT_ARNT2:-0.890429954777;MYFfamily:-0.947360761359;NFIL3:-0.950913304806;HMX1:-0.951090358925;ATF2:-0.987381800456;NANOG{mouse}:-0.991397485045;HOXA9_MEIS1:-1.00934183631;TFAP4:-1.02492465758;MAZ:-1.04291595914;GFI1B:-1.04661411924;RREB1:-1.09880238836;GATA4:-1.10350295132;ZNF384:-1.10843429932;TLX2:-1.12025374178;FOXP1:-1.12503552644;ZIC1..3:-1.14681204112;SPZ1:-1.17477835908;PRDM1:-1.17561355289;HBP1_HMGB_SSRP1_UBTF:-1.18338855083;GZF1:-1.21124058355;POU1F1:-1.24170030319;PATZ1:-1.26279002229;ALX4:-1.28745916716;TOPORS:-1.29961272996;MAFB:-1.32089559521;NKX2-2,8:-1.33167947431;HMGA1,2:-1.36316040604;NFE2L1:-1.3672423535;NR3C1:-1.40847061231;TGIF1:-1.41413733723;AIRE:-1.50399482167;GLI1..3:-1.59096549041;ZNF238:-1.69122023404;ALX1:-1.69753204325;NFATC1..3:-1.71617691505;MZF1:-1.72984156472;XBP1:-2.11050338869;SMAD1..7,9:-2.13569454047;RXR{A,B,G}:-2.41163328779
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10796-110I4;search_select_hide=table117:FF:10796-110I4
}}
}}

Latest revision as of 15:05, 3 June 2020

Name:adenocarcinoma cell line:IM95m
Species:Human (Homo sapiens)
Library ID:CNhs11882
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuestomach
dev stageNA
sexmale
age63
cell typeunclassifiable
cell lineIM95m
companyJAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005010
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11882 CAGE DRX007822 DRR008694
Accession ID Hg19

Library idBAMCTSS
CNhs11882 DRZ000119 DRZ001504
Accession ID Hg38

Library idBAMCTSS
CNhs11882 DRZ011469 DRZ012854
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005010
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10085 RNA-Seq DRX057142 DRR062901
Accession ID Hg19

Library idBAMCTSS
RDhi10085 DRZ007977


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.111
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.412
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate1.067
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0787
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.084
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0913
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0.0745
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.0745
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.145
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.327
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0.0745
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.24
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0745
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0101
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.379
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11882

Jaspar motifP-value
MA0002.20.0374
MA0003.10.915
MA0004.10.111
MA0006.10.231
MA0007.10.0908
MA0009.10.00508
MA0014.10.00901
MA0017.13.24118e-6
MA0018.20.875
MA0019.10.383
MA0024.17.29391e-4
MA0025.10.509
MA0027.10.949
MA0028.14.21083e-4
MA0029.10.0277
MA0030.10.162
MA0031.10.158
MA0035.20.00122
MA0038.13.70686e-4
MA0039.28.94006e-4
MA0040.10.428
MA0041.10.32
MA0042.10.582
MA0043.10.706
MA0046.11.00915e-52
MA0047.23.00636e-4
MA0048.10.25
MA0050.10.0645
MA0051.10.0207
MA0052.10.5
MA0055.10.00472
MA0057.10.227
MA0058.10.139
MA0059.10.0349
MA0060.13.87673e-14
MA0061.10.00114
MA0062.21.28638e-4
MA0065.21.49346e-4
MA0066.10.29
MA0067.10.834
MA0068.17.4824e-4
MA0069.10.167
MA0070.10.151
MA0071.10.447
MA0072.10.0588
MA0073.10.519
MA0074.10.774
MA0076.10.00858
MA0077.10.84
MA0078.10.145
MA0079.20.226
MA0080.20.0817
MA0081.10.075
MA0083.10.169
MA0084.10.0668
MA0087.10.717
MA0088.10.0625
MA0090.10.8
MA0091.10.0167
MA0092.10.157
MA0093.10.0766
MA0099.20.294
MA0100.10.332
MA0101.10.321
MA0102.20.313
MA0103.18.43422e-9
MA0104.20.0064
MA0105.15.71845e-6
MA0106.10.502
MA0107.10.0389
MA0108.20.627
MA0111.10.867
MA0112.20.51
MA0113.10.789
MA0114.11.10236e-12
MA0115.12.67238e-4
MA0116.10.0697
MA0117.10.88
MA0119.10.494
MA0122.10.435
MA0124.10.418
MA0125.10.0971
MA0131.10.662
MA0135.10.216
MA0136.10.755
MA0137.20.0966
MA0138.20.695
MA0139.10.194
MA0140.10.0116
MA0141.10.0503
MA0142.10.201
MA0143.10.905
MA0144.10.117
MA0145.10.291
MA0146.10.00887
MA0147.10.00976
MA0148.10.00111
MA0149.10.0497
MA0150.10.182
MA0152.10.0589
MA0153.11.4395e-22
MA0154.19.29542e-4
MA0155.10.231
MA0156.10.507
MA0157.10.539
MA0159.10.637
MA0160.10.0869
MA0162.10.745
MA0163.10.105
MA0164.10.053
MA0258.10.797
MA0259.10.191



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11882

Novel motifP-value
10.86
100.95
1000.896
1010.376
1020.909
1030.67
1040.717
1050.279
1060.0726
1070.395
1080.505
1090.104
110.722
1100.735
1110.9
1120.467
1130.00944
1140.746
1150.624
1160.105
1170.65
1180.297
1190.55
120.877
1200.961
1210.732
1220.274
1230.0848
1240.142
1250.159
1260.126
1270.253
1280.0565
1290.505
130.0138
1300.241
1310.00541
1320.0574
1330.106
1340.0284
1350.0954
1360.00627
1370.494
1380.35
1390.313
140.888
1400.829
1410.659
1420.967
1430.0829
1440.154
1450.179
1460.539
1470.306
1480.798
1490.47
150.89
1500.678
1510.891
1520.848
1530.533
1540.79
1550.12
1560.423
1570.532
1580.934
1590.881
160.824
1600.661
1610.516
1620.351
1630.66
1640.371
1650.655
1660.564
1670.662
1680.538
1690.44
170.679
180.0672
190.303
20.823
200.553
210.68
220.673
230.0637
240.52
250.843
260.0147
270.645
280.527
290.413
30.535
300.277
310.841
320.0869
330.356
340.426
350.0198
360.436
370.346
380.264
390.836
40.792
400.164
410.115
420.988
430.497
440.505
450.852
460.456
470.981
480.993
490.257
50.547
500.705
510.851
520.485
530.273
540.837
550.552
560.77
570.448
580.511
590.286
60.279
600.92
610.135
620.866
630.841
640.653
650.528
660.00995
670.658
680.0394
690.73
70.124
700.141
710.632
720.91
730.246
740.113
750.894
760.286
770.764
780.0264
790.0124
80.57
800.369
810.181
823.79037e-5
830.719
840.199
850.202
860.873
870.0181
880.354
890.73
90.303
900.241
910.0129
920.154
930.756
940.0535
950.0336
960.343
970.805
980.467
990.659



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11882


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
299 (adenocarcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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