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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005411
|accession_numbers=CAGE;DRX008286;DRR009158;DRZ000583;DRZ001968;DRZ011933;DRZ013318
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002097,UBERON:0002199,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003102,UBERON:0002416
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000057,CL:0002620
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.50!312.35!LHX9;;chr15:57511609..57511651,+!p2@TCF12!1.81!105.01!TCF12;;chr7:19157248..19157268,-!p1@TWIST1!1.56!95.74!TWIST1;;chr4:174451370..174451387,-!p1@HAND2!1.54!33.90!HAND2;;chr2:239756739..239756755,+!p2@TWIST2!1.47!47.82!TWIST2;;chr9:132427972..132428056,+!p1@PRRX2!1.47!36.69!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.45!26.90!PRRX2;;chr10:119303078..119303169,+!p2@EMX2!1.45!26.90!EMX2;;chr2:239756671..239756732,+!p1@TWIST2!1.44!82.34!TWIST2;;chr1:170632285..170632309,+!p1@PRRX1!1.44!29.68!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.39!23.29!HOXC5;;chr4:174450089..174450153,-!p2@HAND2!1.37!22.47!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.36!110.47!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.31!26.07!PRRX1;;chr19:13134772..13134822,+!p2@NFIX!1.27!26.07!NFIX;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.74!IRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!63.27!FOXD1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.17!13.91!RUNX1T1;;chr15:83953397..83953425,-!p1@BNC1!1.11!13.60!BNC1;;chr21:36260773..36260804,-!p7@RUNX1!1.09!15.15!RUNX1;;chr16:86544113..86544145,+!p1@FOXF1!1.09!13.91!FOXF1;;chr1:197886665..197886732,+!p3@LHX9!1.05!10.31!LHX9;;chr10:28034739..28034756,-!p1@MKX!1.04!10.00!MKX;;chr1:170633262..170633285,+!p3@PRRX1!1.03!11.03!PRRX1;;chr20:51588873..51588953,+!p1@TSHZ2!1.02!12.47!TSHZ2;;chr20:55204351..55204377,+!p1@TFAP2C!1.02!12.06!TFAP2C;;chr5:72744445..72744466,-!p2@FOXD1!1.00!15.15!FOXD1;;chrY:21906594..21906622,-!p1@KDM5D!0.99!8.86!KDM5D;;chr2:176994408..176994492,+!p1@HOXD8!0.99!8.86!HOXD8;;chr1:197886421..197886432,+!p2@LHX9!0.98!8.66!LHX9;;chrY:2803415..2803468,+!p1@ZFY!0.98!8.55!ZFY;;chr5:2751785..2751808,-!p2@IRX2!0.98!8.45!IRX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.98!8.45!RUNX1T1;;chr3:157823517..157823562,-!p1@SHOX2!0.95!8.55!SHOX2;;chr10:119302232..119302265,+!p1@EMX2!0.95!7.94!EMX2;;chr7:44143925..44143970,+!p1@AEBP1!0.94!176.84!AEBP1;;chr7:27224842..27224872,-!p1@HOXA11!0.94!7.73!HOXA11;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.24!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!0.93!7.42!TCF21;;chr10:63809106..63809127,+!p1@ARID5B!0.92!103.67!ARID5B;;chr11:46299539..46299620,+!p2@CREB3L1!0.92!12.78!CREB3L1;;chr7:27205136..27205164,-!p1@HOXA9!0.91!7.21!HOXA9;;chr15:37392616..37392638,-!p2@MEIS2!0.90!22.47!MEIS2;;chr14:24837368..24837401,+!p1@NFATC4!0.90!17.11!NFATC4;;chr2:102091566..102091581,-!p1@RFX8!0.90!6.90!RFX8;;chr2:176969228..176969260,+!p1@HOXD11!0.90!6.90!HOXD11;;chr12:53614115..53614154,-!p1@RARG!0.89!38.03!RARG;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.19!ZNF521;;chr15:37390850..37390909,-!p3@MEIS2!0.89!13.60!MEIS2;;chr10:31610110..31610159,+!p2@ZEB1!0.89!6.80!ZEB1;;chr17:46682321..46682362,-!p1@HOXB6!0.89!6.70!HOXB6;;chr5:321810..321877,+!p1@AHRR!0.88!21.64!AHRR;;chr7:27205106..27205134,-!p2@HOXA9!0.88!6.60!HOXA9;;chr2:19558373..19558392,-!p1@OSR1!0.87!18.24!OSR1;;chr15:57511589..57511608,+!p4@TCF12!0.87!6.49!TCF12;;chr12:54402745..54402788,+!p1@HOXC8!0.87!6.49!HOXC8;;chr7:27192185..27192209,-!p1@HOXA3!0.86!6.29!HOXA3;;chr11:65687362..65687436,+!p3@DRAP1!0.85!29.58!DRAP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.85!6.08!HOXC5;;chr3:147111231..147111281,+!p3@ZIC1!0.85!6.08!ZIC1;;chr7:27224795..27224840,-!p2@HOXA11!0.85!6.08!HOXA11;;chr19:13135386..13135435,+!p4@NFIX!0.84!5.98!NFIX;;chr11:65686732..65686756,+!p2@DRAP1!0.83!26.07!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.83!9.07!ZBTB38;;chr3:147111198..147111225,+!p4@ZIC1!0.83!5.77!ZIC1;;chr7:42276787..42276815,-!p1@GLI3!0.82!15.87!GLI3;;chr1:170632250..170632277,+!p7@PRRX1!0.82!5.67!PRRX1;;chr8:67525443..67525459,-!p2@MYBL1!0.81!8.45!MYBL1;;chr16:31076332..31076388,-!p3@ZNF668!0.80!5.36!ZNF668;;chr3:128206762..128206781,-!p2@GATA2!0.79!34.83!GATA2;;chr10:63809013..63809041,+!p3@ARID5B!0.79!31.02!ARID5B;;chr18:53068911..53068935,-!p4@TCF4!0.79!5.98!TCF4;;chr3:21792585..21792625,-!p2@ZNF385D!0.79!5.87!ZNF385D;;chr2:96012397..96012417,+!p3@KCNIP3!0.79!5.15!KCNIP3;;chr3:138665937..138665968,-!p1@FOXL2!0.79!5.15!FOXL2;;chr15:37392724..37392757,-!p1@MEIS2!0.78!24.84!MEIS2;;chr1:158979872..158979898,+!p3@IFI16!0.78!16.80!IFI16;;chr7:44143978..44143989,+!p2@AEBP1!0.78!9.79!AEBP1;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.55!ETV1;;chr11:65686802..65686818,+!p6@DRAP1!0.77!8.97!DRAP1;;chr22:19748231..19748317,+!p1@TBX1!0.77!4.95!TBX1;;chr5:3595977..3595999,+!p1@IRX1!0.77!4.84!IRX1;;chr1:158979792..158979814,+!p2@IFI16!0.76!49.77!IFI16;;chr1:170633058..170633084,+!p5@PRRX1!0.75!4.64!PRRX1;;chr19:13135582..13135600,+!p3@NFIX!0.75!4.64!NFIX;;chr8:49833948..49833973,-!p2@SNAI2!0.74!31.43!SNAI2;;chr15:42749722..42749739,-!p2@ZFP106!0.74!8.45!ZFP106;;chr6:100912785..100912822,-!p1@SIM1!0.74!4.53!SIM1;;chr10:31608127..31608156,+!p1@ZEB1!0.73!90.17!ZEB1;;chr4:4861385..4861398,+!p1@MSX1!0.73!14.12!MSX1;;chr11:65687222..65687240,+!p7@DRAP1!0.73!5.77!DRAP1;;chr7:44143997..44144008,+!p3@AEBP1!0.73!5.77!AEBP1;;chr5:142780189..142780223,-!p6@NR3C1!0.73!4.43!NR3C1;;chr7:27196267..27196311,-!p1@HOXA7!0.73!4.43!HOXA7;;chr14:62162258..62162269,+!p2@HIF1A!0.72!45.65!HIF1A;;chr2:176969097..176969109,+!p3@HOXD11!0.72!4.23!HOXD11;;chr5:3595934..3595957,+!p2@IRX1!0.72!4.23!IRX1;;chr7:27213893..27213954,-!p1@HOXA10!0.72!4.23!HOXA10;;chr7:19157043..19157088,-!p2@TWIST1!0.71!11.44!TWIST1;;chr19:13136130..13136165,+!p6@NFIX!0.70!5.56!NFIX;;chr12:54394309..54394336,+!p2@HOXC9!0.70!4.02!HOXC9;;chr4:174451350..174451363,-!p3@HAND2!0.70!4.02!HAND2;;chr8:49833978..49833996,-!p1@SNAI2!0.69!92.44!SNAI2;;chr12:66218598..66218645,+!p2@HMGA2!0.69!20.40!HMGA2;;chr1:164528445..164528459,+!p2@PBX1!0.69!13.50!PBX1;;chr8:60031619..60031676,-!p1@TOX!0.69!9.17!TOX;;chr1:119530493..119530572,-!p1@TBX15!0.69!3.92!TBX15;;chr10:31607811..31607837,+!p6@ZEB1!0.69!3.92!ZEB1;;chr12:115121962..115121987,-!p1@TBX3!0.68!36.07!TBX3;;chr10:114710244..114710257,+!p3@TCF7L2!0.68!11.34!TCF7L2;;chr1:221052776..221052799,+!p1@HLX!0.67!7.11!HLX;;chr16:54964740..54964789,+!p1@IRX5!0.67!5.67!IRX5;;chr19:47523058..47523114,+!p1@NPAS1!0.67!3.71!NPAS1;;chr1:170632723..170632739,+!p8@PRRX1!0.67!3.71!PRRX1;;chr3:21792682..21792720,-!p1@ZNF385D!0.67!3.71!ZNF385D;;chr10:119302508..119302559,+!p5@EMX2!0.67!3.71!EMX2;;chr5:158526917..158526932,-!p1@EBF1!0.66!9.79!EBF1;;chr7:137686763..137686784,-!p5@CREB3L2!0.66!6.70!CREB3L2;;chr6:10412600..10412637,-!p1@TFAP2A!0.66!6.39!TFAP2A;;chr5:72744562..72744573,-!p3@FOXD1!0.66!4.64!FOXD1;;chr11:46299186..46299195,+!p3@CREB3L1!0.66!4.02!CREB3L1;;chr10:28032421..28032494,-!p2@MKX!0.66!3.61!MKX;;chr15:96869255..96869291,+!p6@NR2F2!0.65!6.90!NR2F2;;chr11:12696071..12696086,+!p3@TEAD1!0.65!4.84!TEAD1;;chr9:16870659..16870675,-!p2@BNC2!0.65!4.43!BNC2;;chr6:10415276..10415341,-!p2@TFAP2A!0.65!4.43!TFAP2A;;chr8:106330656..106330684,+!p1@ZFPM2!0.64!9.89!ZFPM2;;chr10:31607702..31607755,+!p3@ZEB1!0.64!4.02!ZEB1;;chr10:119302645..119302712,+!p3@EMX2!0.64!3.40!EMX2;;chr8:23564065..23564087,-!p1@NKX2-6!0.64!3.40!NKX2-6;;chr3:37217736..37217753,-!p2@LRRFIP2!0.63!15.97!LRRFIP2;;chr2:102091144..102091183,-!p2@RFX8!0.63!3.30!RFX8;;chr2:172949484..172949522,+!p1@DLX1!0.63!3.30!DLX1;;chr14:75894714..75894733,+!p1@JDP2!0.62!107.90!JDP2;;chr14:61116183..61116208,-!p1@SIX1!0.62!13.91!SIX1;;chr15:96874927..96874938,+!p8@NR2F2!0.62!7.63!NR2F2;;chr15:37392703..37392717,-!p8@MEIS2!0.62!4.74!MEIS2;;chr4:81118647..81118666,+!p1@PRDM8!0.62!4.43!PRDM8;;chr17:46675420..46675465,-!p3@HOXB6!0.62!3.81!HOXB6;;chr2:172950227..172950249,+!p2@DLX1!0.62!3.19!DLX1;;chr3:138665969..138665993,-!p2@FOXL2!0.62!3.19!FOXL2;;chr3:147110055..147110129,-!p1@ZIC4!0.62!3.19!ZIC4;;chr3:147127142..147127168,+!p1@ZIC1!0.62!3.19!ZIC1;;chr5:142780237..142780261,-!p7@NR3C1!0.62!3.19!NR3C1;;chr5:3595961..3595975,+!p3@IRX1!0.62!3.19!IRX1;;chr15:96874012..96874042,+!p2@NR2F2!0.61!32.77!NR2F2;;chr3:178789522..178789564,-!p2@ZMAT3!0.61!27.10!ZMAT3;;chr11:65687158..65687216,+!p4@DRAP1!0.61!20.82!DRAP1;;chr1:164528911..164528940,+!p7@PBX1!0.61!4.95!PBX1;;chr15:37392534..37392562,-!p10@MEIS2!0.61!3.40!MEIS2;;chr1:44513995..44514031,+!p1@KLF17!0.61!3.09!KLF17;;chr17:46687959..46688007,-!p2@HOXB7!0.60!4.43!HOXB7;;chr5:43067636..43067674,+!p6@ZNF131!0.60!4.33!ZNF131;;chr6:85473156..85473210,-!p2@TBX18!0.60!3.81!TBX18;;chr15:37392576..37392589,-!p12@MEIS2!0.60!3.81!MEIS2;;chr18:52969674..52969685,-!p24@TCF4!0.60!2.99!TCF4;;chr1:170632137..170632172,+!p10@PRRX1!0.60!2.99!PRRX1;;chr19:13106214..13106382,+!p1@NFIX!0.59!82.85!NFIX;;chr15:96873984..96873999,+!p3@NR2F2!0.59!25.56!NR2F2;;chr2:119604456..119604501,-!p2@EN1!0.59!2.89!EN1;;chr11:46299443..46299459,+!p4@CREB3L1!0.59!2.89!CREB3L1;;chr11:65686952..65686975,+!p5@DRAP1!0.58!18.76!DRAP1;;chr3:168864315..168864339,-!p2@MECOM!0.58!5.05!MECOM;;chr12:80085061..80085119,-!p6@PAWR!0.58!4.95!PAWR;;chr15:37390482..37390572,-!p7@MEIS2!0.58!4.12!MEIS2;;chr1:23696448..23696453,-!p5@ZNF436!0.58!3.61!ZNF436;;chr1:119530857..119530884,-!p4@TBX15!0.58!2.78!TBX15;;chr1:170632115..170632136,+!p9@PRRX1!0.58!2.78!PRRX1;;chr12:124873357..124873401,-!p1@NCOR2!0.57!38.75!NCOR2;;chr14:62162285..62162296,+!p3@HIF1A!0.57!17.00!HIF1A;;chr21:36260343..36260402,-!p6@RUNX1!0.57!4.84!RUNX1;;chr10:63809134..63809145,+!p6@ARID5B!0.56!7.01!ARID5B;;chr8:106330696..106330719,+!p2@ZFPM2!0.56!3.61!ZFPM2;;chr5:72743793..72743855,-!p4@FOXD1!0.56!3.19!FOXD1;;chr17:1958388..1958404,+!p1@HIC1!0.55!20.10!HIC1;;chr1:158969752..158969780,+!p6@IFI16!0.55!4.95!IFI16;;chr21:36260295..36260310,-!p3@RUNX1!0.55!4.53!RUNX1;;chr3:157824001..157824078,-!p2@SHOX2!0.55!2.58!SHOX2;;chr6:100912752..100912778,-!p2@SIM1!0.55!2.58!SIM1;;chr6:34204921..34204939,+!p3@HMGA1!0.54!95.63!HMGA1;;chr3:150126759..150126784,+!p2@TSC22D2!0.54!14.02!TSC22D2;;chr14:73360799..73360817,-!p1@DPF3!0.54!10.31!DPF3;;chr10:63809077..63809089,+!p5@ARID5B!0.54!6.29!ARID5B;;chr15:37391588..37391604,-!p11@MEIS2!0.54!3.40!MEIS2;;chr16:54320617..54320643,-!p3@IRX3!0.54!3.40!IRX3;;chr3:128212033..128212051,-!p1@GATA2!0.54!2.47!GATA2;;chr17:46622070..46622109,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;;chrX:101975643..101975683,+!p1@BHLHB9!0.17!2.16!BHLHB9;;chr10:43932296..43932360,+!p1@ZNF487P!0.17!1.96!ZNF487P;;chr3:114343826..114343869,-!p4@ZBTB20!0.17!1.85!ZBTB20;;chr3:141820622..141820635,-!p5@TFDP2!0.17!1.55!TFDP2;;chr4:56413067..56413086,-!p4@CLOCK!0.17!1.55!CLOCK;;chr6:85474299..85474324,-!p1@TBX18!0.17!1.55!TBX18;;chr1:151043070..151043110,+!p3@GABPB2!0.17!1.34!GABPB2;;chr3:71632743..71632756,-!p16@FOXP1!0.17!1.24!FOXP1;;chr12:56401175..56401225,+!p3@IKZF4!0.17!1.13!IKZF4;;chr16:4365715..4365746,+!p@chr16:4365715..4365746,+!0.17!0.93!GLIS2;;chr2:46602901..46602926,+!p7@EPAS1!0.17!0.93!EPAS1;;chr4:1873216..1873238,+!p5@WHSC1!0.17!0.93!WHSC1;;chr19:57078386..57078407,+!p3@ZNF470!0.17!0.93!ZNF470;;chr15:67358269..67358272,+!p15@SMAD3!0.17!0.82!SMAD3;;chr10:63851669..63851682,+!p10@ARID5B!0.17!0.62!ARID5B;;chr2:121493717..121493755,+!p3@GLI2!0.17!0.62!GLI2;;chr3:71179785..71179810,-!p23@FOXP1!0.17!0.62!FOXP1;;chr5:138629417..138629446,+!p1@MATR3!0.16!120.98!MATR3;;chr2:178129414..178129517,-!p1@NFE2L2!0.16!51.22!NFE2L2;;chr11:128392085..128392232,-!p1@ETS1!0.16!43.69!ETS1;;chr14:21945335..21945419,+!p1@TOX4!0.16!33.49!TOX4;;chr7:106809432..106809455,+!p1@HBP1!0.16!24.94!HBP1;;chr14:74353530..74353571,+!p1@ZNF410!0.16!23.81!ZNF410;;chr6:35464817..35464894,-!p1@TEAD3!0.16!19.37!TEAD3;;chr18:32870148..32870223,-!p1@ZSCAN30!0.16!8.55!ZSCAN30;;chr12:27485785..27485816,+!p1@ARNTL2!0.16!8.35!ARNTL2;;chr15:67357924..67357952,+!p2@SMAD3!0.16!8.04!SMAD3;;chr1:38325256..38325280,-!p1@MTF1!0.16!7.32!MTF1;;chr4:146859927..146860055,-!p1@ZNF827!0.16!7.11!ZNF827;;chr2:85360499..85360598,+!p1@TCF7L1!0.16!6.60!TCF7L1;;chr3:44519131..44519186,-!p1@ZNF445!0.16!6.60!ZNF445;;chr14:74226747..74226779,-!p3@C14orf43!0.16!6.60!C14orf43;;chr4:140005341..140005411,-!p3@ELF2!0.16!6.29!ELF2;;chr19:53836985..53837024,+!p1@ZNF845!0.16!5.67!ZNF845;;chr3:44596679..44596726,+!p1@ZNF167!0.16!4.95!ZNF167;;chr17:56065729..56065781,-!p2@VEZF1!0.16!4.84!VEZF1;;chr1:8483878..8483907,-!p4@RERE!0.16!4.33!RERE;;chr19:44439387..44439419,-!p2@ZNF45!0.16!4.12!ZNF45;;chr19:53758094..53758147,-!p1@ZNF677!0.16!4.12!ZNF677;;chr3:63897742..63897797,+!p2@ATXN7!0.16!3.61!ATXN7;;chr6:126102292..126102329,+!p3@NCOA7!0.16!3.50!NCOA7;;chr3:169490562..169490605,+!p2@MYNN!0.16!3.40!MYNN;;chr16:29819446..29819471,+!p9@MAZ!0.16!3.09!MAZ;;chr5:34929947..34930005,+!p3@DNAJC21!0.16!2.99!DNAJC21;;chr3:52001426..52001447,-!p3@PCBP4!0.16!2.89!PCBP4;;chr4:1873155..1873185,+!p3@WHSC1!0.16!2.89!WHSC1;;chr2:148778973..148779035,+!p3@MBD5!0.16!2.58!MBD5;;chr1:23694697..23694756,-!p3@ZNF436!0.16!2.16!ZNF436;;chr4:144435112..144435176,+!p3@SMARCA5!0.16!1.85!SMARCA5;;chr11:9482521..9482533,+!p2@ZNF143!0.16!1.65!ZNF143;;chr3:40566488..40566502,+!p3@ZNF621!0.16!1.55!ZNF621;;chr8:182368..182402,+!p2@ZNF596!0.16!1.55!ZNF596;;chr3:71630690..71630750,-!p11@FOXP1!0.16!1.34!FOXP1;;chr6:42419316..42419340,-!p4@TRERF1!0.16!1.13!TRERF1;;chr17:38792325..38792330,-!p3@SMARCE1!0.16!1.03!SMARCE1;;chrX:66763856..66763896,+!p1@AR!0.16!1.03!AR;;chrX:129402754..129402766,-!p3@ZNF280C!0.16!0.93!ZNF280C;;chr11:6947647..6947698,+!p2@ZNF215!0.16!0.93!ZNF215;;chr12:66218443..66218461,+!p8@HMGA2!0.16!0.82!HMGA2;;chr22:29196030..29196075,-!p5@XBP1!0.16!0.82!XBP1;;chr2:231077626..231077651,-!p6@SP110!0.16!0.82!SP110;;chr19:50431973..50431998,+!p5@ATF5!0.16!0.82!ATF5;;chr21:36231861..36231877,-!p12@RUNX1!0.16!0.82!RUNX1;;chr5:124082279..124082319,-!p3@ZNF608!0.16!0.72!ZNF608;;
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.50!312.35!LHX9;;chr15:57511609..57511651,+!p2@TCF12!1.81!105.01!TCF12;;chr7:19157248..19157268,-!p1@TWIST1!1.56!95.74!TWIST1;;chr4:174451370..174451387,-!p1@HAND2!1.54!33.90!HAND2;;chr2:239756739..239756755,+!p2@TWIST2!1.47!47.82!TWIST2;;chr9:132427972..132428056,+!p1@PRRX2!1.47!36.69!PRRX2;;chr9:132427883..132427951,+!p2@PRRX2!1.45!26.90!PRRX2;;chr10:119303078..119303169,+!p2@EMX2!1.45!26.90!EMX2;;chr2:239756671..239756732,+!p1@TWIST2!1.44!82.34!TWIST2;;chr1:170632285..170632309,+!p1@PRRX1!1.44!29.68!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.39!23.29!HOXC5;;chr4:174450089..174450153,-!p2@HAND2!1.37!22.47!HAND2;;chr11:46299199..46299233,+!p1@CREB3L1!1.36!110.47!CREB3L1;;chr1:170633348..170633399,+!p2@PRRX1!1.31!26.07!PRRX1;;chr19:13134772..13134822,+!p2@NFIX!1.27!26.07!NFIX;;chr5:2751762..2751784,-!p1@IRX2!1.20!14.74!IRX2;;chr5:72744594..72744609,-!p1@FOXD1!1.17!63.27!FOXD1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.17!13.91!RUNX1T1;;chr15:83953397..83953425,-!p1@BNC1!1.11!13.60!BNC1;;chr21:36260773..36260804,-!p7@RUNX1!1.09!15.15!RUNX1;;chr16:86544113..86544145,+!p1@FOXF1!1.09!13.91!FOXF1;;chr1:197886665..197886732,+!p3@LHX9!1.05!10.31!LHX9;;chr10:28034739..28034756,-!p1@MKX!1.04!10.00!MKX;;chr1:170633262..170633285,+!p3@PRRX1!1.03!11.03!PRRX1;;chr20:51588873..51588953,+!p1@TSHZ2!1.02!12.47!TSHZ2;;chr20:55204351..55204377,+!p1@TFAP2C!1.02!12.06!TFAP2C;;chr5:72744445..72744466,-!p2@FOXD1!1.00!15.15!FOXD1;;chrY:21906594..21906622,-!p1@KDM5D!0.99!8.86!KDM5D;;chr2:176994408..176994492,+!p1@HOXD8!0.99!8.86!HOXD8;;chr1:197886421..197886432,+!p2@LHX9!0.98!8.66!LHX9;;chrY:2803415..2803468,+!p1@ZFY!0.98!8.55!ZFY;;chr5:2751785..2751808,-!p2@IRX2!0.98!8.45!IRX2;;chr8:93074848..93074871,-!p3@RUNX1T1!0.98!8.45!RUNX1T1;;chr3:157823517..157823562,-!p1@SHOX2!0.95!8.55!SHOX2;;chr10:119302232..119302265,+!p1@EMX2!0.95!7.94!EMX2;;chr7:44143925..44143970,+!p1@AEBP1!0.94!176.84!AEBP1;;chr7:27224842..27224872,-!p1@HOXA11!0.94!7.73!HOXA11;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.24!PRRX1;;chr6:134210243..134210257,+!p1@TCF21!0.93!7.42!TCF21;;chr10:63809106..63809127,+!p1@ARID5B!0.92!103.67!ARID5B;;chr11:46299539..46299620,+!p2@CREB3L1!0.92!12.78!CREB3L1;;chr7:27205136..27205164,-!p1@HOXA9!0.91!7.21!HOXA9;;chr15:37392616..37392638,-!p2@MEIS2!0.90!22.47!MEIS2;;chr14:24837368..24837401,+!p1@NFATC4!0.90!17.11!NFATC4;;chr2:102091566..102091581,-!p1@RFX8!0.90!6.90!RFX8;;chr2:176969228..176969260,+!p1@HOXD11!0.90!6.90!HOXD11;;chr12:53614115..53614154,-!p1@RARG!0.89!38.03!RARG;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.19!ZNF521;;chr15:37390850..37390909,-!p3@MEIS2!0.89!13.60!MEIS2;;chr10:31610110..31610159,+!p2@ZEB1!0.89!6.80!ZEB1;;chr17:46682321..46682362,-!p1@HOXB6!0.89!6.70!HOXB6;;chr5:321810..321877,+!p1@AHRR!0.88!21.64!AHRR;;chr7:27205106..27205134,-!p2@HOXA9!0.88!6.60!HOXA9;;chr2:19558373..19558392,-!p1@OSR1!0.87!18.24!OSR1;;chr15:57511589..57511608,+!p4@TCF12!0.87!6.49!TCF12;;chr12:54402745..54402788,+!p1@HOXC8!0.87!6.49!HOXC8;;chr7:27192185..27192209,-!p1@HOXA3!0.86!6.29!HOXA3;;chr11:65687362..65687436,+!p3@DRAP1!0.85!29.58!DRAP1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.85!6.08!HOXC5;;chr3:147111231..147111281,+!p3@ZIC1!0.85!6.08!ZIC1;;chr7:27224795..27224840,-!p2@HOXA11!0.85!6.08!HOXA11;;chr19:13135386..13135435,+!p4@NFIX!0.84!5.98!NFIX;;chr11:65686732..65686756,+!p2@DRAP1!0.83!26.07!DRAP1;;chr3:141121847..141121868,+!p5@ZBTB38!0.83!9.07!ZBTB38;;chr3:147111198..147111225,+!p4@ZIC1!0.83!5.77!ZIC1;;chr7:42276787..42276815,-!p1@GLI3!0.82!15.87!GLI3;;chr1:170632250..170632277,+!p7@PRRX1!0.82!5.67!PRRX1;;chr8:67525443..67525459,-!p2@MYBL1!0.81!8.45!MYBL1;;chr16:31076332..31076388,-!p3@ZNF668!0.80!5.36!ZNF668;;chr3:128206762..128206781,-!p2@GATA2!0.79!34.83!GATA2;;chr10:63809013..63809041,+!p3@ARID5B!0.79!31.02!ARID5B;;chr18:53068911..53068935,-!p4@TCF4!0.79!5.98!TCF4;;chr3:21792585..21792625,-!p2@ZNF385D!0.79!5.87!ZNF385D;;chr2:96012397..96012417,+!p3@KCNIP3!0.79!5.15!KCNIP3;;chr3:138665937..138665968,-!p1@FOXL2!0.79!5.15!FOXL2;;chr15:37392724..37392757,-!p1@MEIS2!0.78!24.84!MEIS2;;chr1:158979872..158979898,+!p3@IFI16!0.78!16.80!IFI16;;chr7:44143978..44143989,+!p2@AEBP1!0.78!9.79!AEBP1;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.55!ETV1;;chr11:65686802..65686818,+!p6@DRAP1!0.77!8.97!DRAP1;;chr22:19748231..19748317,+!p1@TBX1!0.77!4.95!TBX1;;chr5:3595977..3595999,+!p1@IRX1!0.77!4.84!IRX1;;chr1:158979792..158979814,+!p2@IFI16!0.76!49.77!IFI16;;chr1:170633058..170633084,+!p5@PRRX1!0.75!4.64!PRRX1;;chr19:13135582..13135600,+!p3@NFIX!0.75!4.64!NFIX;;chr8:49833948..49833973,-!p2@SNAI2!0.74!31.43!SNAI2;;chr15:42749722..42749739,-!p2@ZFP106!0.74!8.45!ZFP106;;chr6:100912785..100912822,-!p1@SIM1!0.74!4.53!SIM1;;chr10:31608127..31608156,+!p1@ZEB1!0.73!90.17!ZEB1;;chr4:4861385..4861398,+!p1@MSX1!0.73!14.12!MSX1;;chr11:65687222..65687240,+!p7@DRAP1!0.73!5.77!DRAP1;;chr7:44143997..44144008,+!p3@AEBP1!0.73!5.77!AEBP1;;chr5:142780189..14278022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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000057;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002620;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002416
|ffid_belonging_in_development=CL:0000134
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
Line 38: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3.CNhs11913.11560-120D3.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3.CNhs11913.11560-120D3.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3.CNhs11913.11560-120D3.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3.CNhs11913.11560-120D3.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520skin%2520dystrophia%2520myotonica%252c%2520donor3.CNhs11913.11560-120D3.hg38.nobarcode.ctss.bed.gz
|id=FF:11560-120D3
|id=FF:11560-120D3
|is_a=EFO:0002091;;FF:0000253
|is_a=EFO:0002091;;FF:0000253
|is_obsolete=
|is_obsolete=
|library_id=CNhs11913
|library_id_phase_based=2:CNhs11913
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11560
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11560
|name=Fibroblast - skin dystrophia myotonica, donor3
|name=Fibroblast - skin dystrophia myotonica, donor3
|namespace=FANTOM5
|namespace=FANTOM5
Line 46: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11913,LSID842,release014,COMPLETED
|profile_hcage=CNhs11913,LSID842,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 62: Line 79:
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|sample_age=18 year old adult
|sample_age=18 year old adult
|sample_category=primary cells
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|sample_cell_line=
Line 83: Line 101:
|top_motifs=HBP1_HMGB_SSRP1_UBTF:1.91603984986;ZNF238:1.89125222075;GZF1:1.84968333796;NKX2-2,8:1.68557104435;XBP1:1.48386438007;TAL1_TCF{3,4,12}:1.46013285035;NKX3-1:1.44377022629;NKX3-2:1.32902196339;ESR1:1.26952104397;TEAD1:1.16155867113;KLF4:1.15624177582;ALX4:1.07359651645;PAX1,9:1.05415072625;MYBL2:1.03326677184;HSF1,2:0.984103241421;NR3C1:0.980002141478;TFAP4:0.979835507069;HOX{A5,B5}:0.979182405885;EN1,2:0.946734398849;UFEwm:0.930780606464;HES1:0.871332499934;TP53:0.857322962268;SOX17:0.843496471674;TBX4,5:0.843021221042;HAND1,2:0.829530140165;GFI1B:0.819372821647;NFIX:0.811797874449;GCM1,2:0.804019230789;PDX1:0.795253702683;HMX1:0.794960964583;RXRA_VDR{dimer}:0.756285713157;MAFB:0.743002958677;GFI1:0.738456871415;GTF2I:0.721018821966;NR1H4:0.717219456706;MZF1:0.71660010771;TFAP2{A,C}:0.692530406553;NFATC1..3:0.648773221699;HMGA1,2:0.641324091532;CRX:0.626567508761;SRF:0.621283406229;HIF1A:0.620715449883;STAT1,3:0.609775053978;NANOG{mouse}:0.609126257625;RXR{A,B,G}:0.608254501846;NKX6-1,2:0.594625191618;NFE2L1:0.545091317954;GATA4:0.544767308421;AHR_ARNT_ARNT2:0.539653442471;ELK1,4_GABP{A,B1}:0.531597691821;TLX1..3_NFIC{dimer}:0.516184100029;YY1:0.496551783864;MTE{core}:0.481371111638;ATF6:0.460405410426;SPZ1:0.452806516143;MYB:0.417969837857;PATZ1:0.401956927351;TFDP1:0.394630521955;XCPE1{core}:0.3871023883;PRDM1:0.385943541098;POU3F1..4:0.385425074832;FOX{I1,J2}:0.379689990797;ALX1:0.375852071338;SMAD1..7,9:0.363180204979;NRF1:0.357343454925;PRRX1,2:0.355715605587;HOX{A4,D4}:0.354101299847;TFCP2:0.350327463165;ZNF384:0.347261323495;ZBTB6:0.338552585638;ZIC1..3:0.331045592015;EVI1:0.324371116751;MAZ:0.320894384643;ZNF148:0.317976320115;GLI1..3:0.31166586274;PAX5:0.310370504074;PAX8:0.285484609943;IKZF1:0.280693794505;HLF:0.267381213434;FOXD3:0.265910227602;TFAP2B:0.249902293626;EBF1:0.23956251006;CEBPA,B_DDIT3:0.238514808323;NFE2L2:0.216937087004;FOXO1,3,4:0.192872248482;ARID5B:0.188631527112;BACH2:0.185692611316;ZNF143:0.166121558109;MYFfamily:0.162652757365;LEF1_TCF7_TCF7L1,2:0.156217073486;E2F1..5:0.152690676983;MTF1:0.138865986056;GTF2A1,2:0.131375949642;FOXL1:0.125776547499;IRF1,2:0.113897925511;DBP:0.107849893958;FOS_FOS{B,L1}_JUN{B,D}:0.103153974993;NFE2:0.101564757375;RREB1:0.0918995363522;NKX2-3_NKX2-5:0.07380494598;LHX3,4:0.0559503699551;RUNX1..3:0.0346348751123;TEF:-0.000319833403502;POU5F1:-0.00736163130815;EGR1..3:-0.0095196357259;NHLH1,2:-0.00954759661584;PAX3,7:-0.0137867087784;TOPORS:-0.0206624200896;ZFP161:-0.0246958828118;HNF1A:-0.0361475344472;HOX{A6,A7,B6,B7}:-0.0454489645834;AIRE:-0.0761989134082;RFX1:-0.0784930880124;BPTF:-0.0892755194665;ADNP_IRX_SIX_ZHX:-0.0912770847878;TLX2:-0.0939143245837;TBP:-0.109454369922;MED-1{core}:-0.121317893186;DMAP1_NCOR{1,2}_SMARC:-0.126790924103;POU1F1:-0.128519548414;SOX5:-0.129451891416;FOXA2:-0.131697850612;STAT2,4,6:-0.131705399115;ZNF423:-0.134554168151;ELF1,2,4:-0.138668262615;NR6A1:-0.139251284108;CDC5L:-0.149060276063;PBX1:-0.168441486319;FOXM1:-0.183353700142;HIC1:-0.198796964937;MEF2{A,B,C,D}:-0.208972042436;FOSL2:-0.2110124243;SP1:-0.216551110532;bHLH_family:-0.244886126417;FOX{D1,D2}:-0.270998149117;EP300:-0.293738161849;NFIL3:-0.308847078098;FOXN1:-0.315321401097;NKX2-1,4:-0.330733714203;AR:-0.336671937978;HNF4A_NR2F1,2:-0.340207438402;TGIF1:-0.344873829953;REST:-0.349341484162;NFY{A,B,C}:-0.3501227058;SPI1:-0.358172901525;CREB1:-0.364973188442;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.36671926744;IRF7:-0.383209624514;NFKB1_REL_RELA:-0.392766796851;PPARG:-0.404442306252;ONECUT1,2:-0.417239648692;PAX2:-0.418526717876;ETS1,2:-0.432892385211;RBPJ:-0.435812945183;BREu{core}:-0.446404440395;ATF5_CREB3:-0.479147087995;SPIB:-0.49150607869;SOX2:-0.494391837445;NANOG:-0.517597917542;T:-0.521821862652;SREBF1,2:-0.531027187371;JUN:-0.539030629059;CUX2:-0.54825766829;ESRRA:-0.590944201083;STAT5{A,B}:-0.597189916281;POU6F1:-0.601313905661;ZBTB16:-0.619804898022;ATF4:-0.627451908452;FOXP1:-0.635431680314;VSX1,2:-0.663726641378;RFX2..5_RFXANK_RFXAP:-0.687308926619;ATF2:-0.697078294654;GATA6:-0.707002924573;FOXQ1:-0.71903268109;FOXP3:-0.768273662468;CDX1,2,4:-0.78143294309;PAX4:-0.78567686705;OCT4_SOX2{dimer}:-0.789715913282;SOX{8,9,10}:-0.80608611362;NR5A1,2:-0.83780725252;ZEB1:-0.843315756639;PAX6:-0.856131424414;SNAI1..3:-0.866914487834;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.878664604424;POU2F1..3:-0.884256957196;PITX1..3:-0.932779729148;FOX{F1,F2,J1}:-0.944380191615;HOXA9_MEIS1:-0.954397946545;RORA:-1.01053154738;IKZF2:-1.15637128274;LMO2:-1.32655330165;MYOD1:-1.4637426589
|top_motifs=HBP1_HMGB_SSRP1_UBTF:1.91603984986;ZNF238:1.89125222075;GZF1:1.84968333796;NKX2-2,8:1.68557104435;XBP1:1.48386438007;TAL1_TCF{3,4,12}:1.46013285035;NKX3-1:1.44377022629;NKX3-2:1.32902196339;ESR1:1.26952104397;TEAD1:1.16155867113;KLF4:1.15624177582;ALX4:1.07359651645;PAX1,9:1.05415072625;MYBL2:1.03326677184;HSF1,2:0.984103241421;NR3C1:0.980002141478;TFAP4:0.979835507069;HOX{A5,B5}:0.979182405885;EN1,2:0.946734398849;UFEwm:0.930780606464;HES1:0.871332499934;TP53:0.857322962268;SOX17:0.843496471674;TBX4,5:0.843021221042;HAND1,2:0.829530140165;GFI1B:0.819372821647;NFIX:0.811797874449;GCM1,2:0.804019230789;PDX1:0.795253702683;HMX1:0.794960964583;RXRA_VDR{dimer}:0.756285713157;MAFB:0.743002958677;GFI1:0.738456871415;GTF2I:0.721018821966;NR1H4:0.717219456706;MZF1:0.71660010771;TFAP2{A,C}:0.692530406553;NFATC1..3:0.648773221699;HMGA1,2:0.641324091532;CRX:0.626567508761;SRF:0.621283406229;HIF1A:0.620715449883;STAT1,3:0.609775053978;NANOG{mouse}:0.609126257625;RXR{A,B,G}:0.608254501846;NKX6-1,2:0.594625191618;NFE2L1:0.545091317954;GATA4:0.544767308421;AHR_ARNT_ARNT2:0.539653442471;ELK1,4_GABP{A,B1}:0.531597691821;TLX1..3_NFIC{dimer}:0.516184100029;YY1:0.496551783864;MTE{core}:0.481371111638;ATF6:0.460405410426;SPZ1:0.452806516143;MYB:0.417969837857;PATZ1:0.401956927351;TFDP1:0.394630521955;XCPE1{core}:0.3871023883;PRDM1:0.385943541098;POU3F1..4:0.385425074832;FOX{I1,J2}:0.379689990797;ALX1:0.375852071338;SMAD1..7,9:0.363180204979;NRF1:0.357343454925;PRRX1,2:0.355715605587;HOX{A4,D4}:0.354101299847;TFCP2:0.350327463165;ZNF384:0.347261323495;ZBTB6:0.338552585638;ZIC1..3:0.331045592015;EVI1:0.324371116751;MAZ:0.320894384643;ZNF148:0.317976320115;GLI1..3:0.31166586274;PAX5:0.310370504074;PAX8:0.285484609943;IKZF1:0.280693794505;HLF:0.267381213434;FOXD3:0.265910227602;TFAP2B:0.249902293626;EBF1:0.23956251006;CEBPA,B_DDIT3:0.238514808323;NFE2L2:0.216937087004;FOXO1,3,4:0.192872248482;ARID5B:0.188631527112;BACH2:0.185692611316;ZNF143:0.166121558109;MYFfamily:0.162652757365;LEF1_TCF7_TCF7L1,2:0.156217073486;E2F1..5:0.152690676983;MTF1:0.138865986056;GTF2A1,2:0.131375949642;FOXL1:0.125776547499;IRF1,2:0.113897925511;DBP:0.107849893958;FOS_FOS{B,L1}_JUN{B,D}:0.103153974993;NFE2:0.101564757375;RREB1:0.0918995363522;NKX2-3_NKX2-5:0.07380494598;LHX3,4:0.0559503699551;RUNX1..3:0.0346348751123;TEF:-0.000319833403502;POU5F1:-0.00736163130815;EGR1..3:-0.0095196357259;NHLH1,2:-0.00954759661584;PAX3,7:-0.0137867087784;TOPORS:-0.0206624200896;ZFP161:-0.0246958828118;HNF1A:-0.0361475344472;HOX{A6,A7,B6,B7}:-0.0454489645834;AIRE:-0.0761989134082;RFX1:-0.0784930880124;BPTF:-0.0892755194665;ADNP_IRX_SIX_ZHX:-0.0912770847878;TLX2:-0.0939143245837;TBP:-0.109454369922;MED-1{core}:-0.121317893186;DMAP1_NCOR{1,2}_SMARC:-0.126790924103;POU1F1:-0.128519548414;SOX5:-0.129451891416;FOXA2:-0.131697850612;STAT2,4,6:-0.131705399115;ZNF423:-0.134554168151;ELF1,2,4:-0.138668262615;NR6A1:-0.139251284108;CDC5L:-0.149060276063;PBX1:-0.168441486319;FOXM1:-0.183353700142;HIC1:-0.198796964937;MEF2{A,B,C,D}:-0.208972042436;FOSL2:-0.2110124243;SP1:-0.216551110532;bHLH_family:-0.244886126417;FOX{D1,D2}:-0.270998149117;EP300:-0.293738161849;NFIL3:-0.308847078098;FOXN1:-0.315321401097;NKX2-1,4:-0.330733714203;AR:-0.336671937978;HNF4A_NR2F1,2:-0.340207438402;TGIF1:-0.344873829953;REST:-0.349341484162;NFY{A,B,C}:-0.3501227058;SPI1:-0.358172901525;CREB1:-0.364973188442;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.36671926744;IRF7:-0.383209624514;NFKB1_REL_RELA:-0.392766796851;PPARG:-0.404442306252;ONECUT1,2:-0.417239648692;PAX2:-0.418526717876;ETS1,2:-0.432892385211;RBPJ:-0.435812945183;BREu{core}:-0.446404440395;ATF5_CREB3:-0.479147087995;SPIB:-0.49150607869;SOX2:-0.494391837445;NANOG:-0.517597917542;T:-0.521821862652;SREBF1,2:-0.531027187371;JUN:-0.539030629059;CUX2:-0.54825766829;ESRRA:-0.590944201083;STAT5{A,B}:-0.597189916281;POU6F1:-0.601313905661;ZBTB16:-0.619804898022;ATF4:-0.627451908452;FOXP1:-0.635431680314;VSX1,2:-0.663726641378;RFX2..5_RFXANK_RFXAP:-0.687308926619;ATF2:-0.697078294654;GATA6:-0.707002924573;FOXQ1:-0.71903268109;FOXP3:-0.768273662468;CDX1,2,4:-0.78143294309;PAX4:-0.78567686705;OCT4_SOX2{dimer}:-0.789715913282;SOX{8,9,10}:-0.80608611362;NR5A1,2:-0.83780725252;ZEB1:-0.843315756639;PAX6:-0.856131424414;SNAI1..3:-0.866914487834;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.878664604424;POU2F1..3:-0.884256957196;PITX1..3:-0.932779729148;FOX{F1,F2,J1}:-0.944380191615;HOXA9_MEIS1:-0.954397946545;RORA:-1.01053154738;IKZF2:-1.15637128274;LMO2:-1.32655330165;MYOD1:-1.4637426589
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11560-120D3;search_select_hide=table117:FF:11560-120D3
}}
}}

Latest revision as of 18:09, 4 June 2020

Name:Fibroblast - skin dystrophia myotonica, donor3
Species:Human (Homo sapiens)
Library ID:CNhs11913
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexM
age18 year old adult
cell typefibroblast
cell lineNA
companyCoriell
collaborationSplicing (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numbercustom
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005411
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11913 CAGE DRX008286 DRR009158
Accession ID Hg19

Library idBAMCTSS
CNhs11913 DRZ000583 DRZ001968
Accession ID Hg38

Library idBAMCTSS
CNhs11913 DRZ011933 DRZ013318
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.113
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.162
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.5
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0058
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.241
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0814
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.423
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.235
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.309
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.261
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.0485
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0814
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.261
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.0263
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.117
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0426
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.388
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.209
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.531
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.209
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.514
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.486
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11913

Jaspar motifP-value
MA0002.20.187
MA0003.10.739
MA0004.10.0108
MA0006.10.433
MA0007.10.503
MA0009.10.374
MA0014.10.495
MA0017.10.083
MA0018.21.82619e-6
MA0019.10.744
MA0024.10.702
MA0025.10.0866
MA0027.10.499
MA0028.10.224
MA0029.10.328
MA0030.10.56
MA0031.10.954
MA0035.20.00904
MA0038.10.251
MA0039.20.019
MA0040.10.339
MA0041.10.589
MA0042.10.794
MA0043.10.00625
MA0046.10.926
MA0047.20.924
MA0048.10.0327
MA0050.10.227
MA0051.10.689
MA0052.10.488
MA0055.10.337
MA0057.10.409
MA0058.10.00546
MA0059.10.0704
MA0060.10.00196
MA0061.10.015
MA0062.20.174
MA0065.20.0574
MA0066.10.829
MA0067.10.00588
MA0068.10.878
MA0069.10.206
MA0070.10.649
MA0071.10.333
MA0072.10.674
MA0073.10.823
MA0074.10.988
MA0076.10.14
MA0077.10.2
MA0078.10.398
MA0079.20.813
MA0080.22.03326e-8
MA0081.10.102
MA0083.10.135
MA0084.10.161
MA0087.10.719
MA0088.10.421
MA0090.11.65578e-4
MA0091.10.0776
MA0092.10.237
MA0093.10.025
MA0099.20.953
MA0100.10.883
MA0101.10.00149
MA0102.20.744
MA0103.16.53335e-6
MA0104.20.0051
MA0105.10.141
MA0106.10.0275
MA0107.14.9867e-4
MA0108.20.88
MA0111.10.0697
MA0112.20.463
MA0113.10.876
MA0114.10.0521
MA0115.10.081
MA0116.10.987
MA0117.10.703
MA0119.10.807
MA0122.10.55
MA0124.10.987
MA0125.10.549
MA0131.10.825
MA0135.10.913
MA0136.12.81531e-6
MA0137.20.672
MA0138.20.918
MA0139.10.657
MA0140.10.041
MA0141.10.135
MA0142.10.00919
MA0143.10.731
MA0144.10.788
MA0145.10.76
MA0146.10.893
MA0147.10.039
MA0148.10.856
MA0149.10.55
MA0150.10.229
MA0152.10.0325
MA0153.10.285
MA0154.10.886
MA0155.10.563
MA0156.10.0226
MA0157.10.853
MA0159.10.266
MA0160.10.0203
MA0162.10.295
MA0163.10.041
MA0164.10.718
MA0258.10.164
MA0259.10.431



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11913

Novel motifP-value
10.525
100.948
1000.399
1010.242
1020.0377
1030.826
1040.677
1050.375
1060.0605
1070.469
1080.701
1090.7
110.557
1100.64
1110.121
1120.968
1139.16156e-4
1140.907
1150.326
1160.615
1170.972
1180.765
1190.143
120.32
1200.591
1210.508
1220.114
1232.09756e-5
1240.964
1250.83
1260.533
1270.452
1280.139
1290.509
130.311
1300.0821
1310.635
1320.497
1330.679
1340.39
1350.44
1360.152
1370.371
1380.424
1390.0422
140.291
1400.293
1410.0757
1420.841
1430.574
1440.77
1450.768
1460.652
1470.136
1480.0548
1490.101
150.127
1500.372
1510.238
1520.365
1530.366
1540.754
1550.00409
1560.673
1570.217
1580.00256
1590.363
160.428
1600.792
1610.388
1620.658
1630.858
1640.993
1650.0804
1660.0571
1670.348
1680.558
1690.111
170.894
180.353
190.0432
20.413
200.48
210.148
220.382
230.886
240.918
250.305
260.488
270.951
280.504
290.948
30.88
300.138
310.717
321.68831e-9
330.58
340.971
350.444
360.0399
370.191
380.297
390.543
40.418
400.0217
410.558
420.72
430.259
440.547
450.569
460.816
470.462
480.544
490.0749
50.76
500.607
510.743
520.53
530.223
540.781
550.19
560.868
570.884
580.11
590.531
60.266
600.124
610.766
620.317
630.754
640.422
650.578
660.848
670.642
680.944
690.734
70.11
700.361
710.69
720.434
730.393
740.246
750.726
760.955
770.212
780.102
790.0857
80.695
800.798
810.37
820.472
830.0952
840.38
850.265
860.473
870.373
880.559
890.787
90.552
900.656
910.568
920.541
930.783
940.787
950.738
960.909
970.484
980.105
990.0143



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11913


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0002620 (skin fibroblast)

DOID: Disease
4 (disease)
17 (musculoskeletal system disease)
450 (myotonic disease)
7 (disease of anatomical entity)
66 (muscle tissue disease)
423 (myopathy)
0080000 (muscular disease)
11722 (myotonic dystrophy)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002097 (skin of body)
0002199 (integument)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003102 (surface structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000250 (human fibroblast of skin sample)
0000001 (sample)
0000253 (human fibroblast- skin dystrophia myotonica sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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