FFCP PHASE1:Hg19::chr6:24178792..24178829,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:24178792..24178829,+ | |||
|coexpression_cluster_id=C860 | |coexpression_cluster_id=C860 | ||
|description=CAGE_peak_at_chr6:24178792..24178829,+ | |description=CAGE_peak_at_chr6:24178792..24178829,+ | ||
|id=chr6:24178792..24178829,+ | |id=chr6:24178792..24178829,+ | ||
|ontology_enrichment_celltype=CL:1000507!7.08e-11!12;CL:1000494!7.08e-11!12;CL:0000066!8.31e-09!254;CL:1000497!2.34e-08!18;CL:0002518!2.34e-08!18;CL:1000449!1.03e-07!16;CL:0000239!2.34e-07!3;CL:1000615!2.34e-07!3;CL:0002306!2.34e-07!3 | |ontology_enrichment_celltype=CL:1000507!7.08e-11!12;CL:1000494!7.08e-11!12;CL:0000066!8.31e-09!254;CL:1000497!2.34e-08!18;CL:0002518!2.34e-08!18;CL:1000449!1.03e-07!16;CL:0000239!2.34e-07!3;CL:1000615!2.34e-07!3;CL:0002306!2.34e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:1000507;4.60e-33;10!CL:1000494;4.60e-33;10!CL:1000449;8.47e-22;15!CL:1000497;3.82e-19;17!CL:0002518;3.82e-19;17!CL:0002681;3.06e-14;12!CL:0002584;3.06e-14;12!CL:0000182;3.43e-14;12!CL:0000239;3.50e-10;3!CL:1000615;3.50e-10;3!CL:0002306;3.50e-10;3!CL:0000313;9.78e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,2.13e-33,10;CL:1000494,2.13e-33,10;CL:1000449,5.10e-22,15;CL:1000497,2.45e-19,17;CL:0002518,2.45e-19,17;CL:0002681,2.22e-14,12;CL:0002584,2.22e-14,12;CL:0000182,3.11e-14,12;CL:0000066,1.29e-12,253;CL:0000239,3.12e-10,3;CL:1000615,3.12e-10,3;CL:0002306,3.12e-10,3;CL:0000313,9.79e-09,1;CL:0000223,3.11e-08,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;1.71e-15;11!UBERON:0009497;4.35e-13;13!UBERON:0001041;9.81e-08;30!UBERON:0003104;2.27e-07;31 | |||
|ontology_enrichment_disease=DOID:299!1.68e-11!25;DOID:193!7.94e-11!29;DOID:120!3.36e-10!27;DOID:0050687!3.60e-10!143;DOID:14566!3.23e-09!239;DOID:305!3.84e-09!106;DOID:162!3.92e-09!235 | |ontology_enrichment_disease=DOID:299!1.68e-11!25;DOID:193!7.94e-11!29;DOID:120!3.36e-10!27;DOID:0050687!3.60e-10!143;DOID:14566!3.23e-09!239;DOID:305!3.84e-09!106;DOID:162!3.92e-09!235 | ||
|ontology_enrichment_disease_v019=DOID:299;8.33e-17;25!DOID:4468;4.31e-15;2!DOID:120;7.13e-09;27!DOID:2152;9.78e-09;1!DOID:193;3.18e-08;29!DOID:7;1.06e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:299,1.08e-16,25;DOID:4468,6.82e-15,2;DOID:0050687,3.62e-12,143;DOID:305,9.33e-12,106;DOID:162,6.75e-09,235;DOID:120,7.09e-09,27;DOID:2152,9.79e-09,1;DOID:14566,1.25e-08,239;DOID:193,3.16e-08,29;DOID:7,7.51e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0005172!4.57e-11!55;UBERON:0005173!4.57e-11!55;UBERON:0009773!7.08e-11!12;UBERON:0001231!7.08e-11!12;UBERON:0004810!7.08e-11!12;UBERON:0002113!4.48e-10!27;UBERON:0003918!4.48e-10!27;UBERON:0005095!4.48e-10!27;UBERON:0007687!4.48e-10!27;UBERON:0002417!2.04e-09!61;UBERON:0000916!2.04e-09!61;UBERON:0003886!1.19e-08!63;UBERON:0002553!4.40e-08!70;UBERON:0000489!5.47e-08!32;UBERON:0005156!7.26e-08!59;UBERON:0000990!7.26e-08!59;UBERON:0006554!7.98e-08!44;UBERON:0004211!1.03e-07!16;UBERON:0001285!1.03e-07!16;UBERON:0007684!1.03e-07!16;UBERON:0003220!1.03e-07!16;UBERON:0004208!1.03e-07!16;UBERON:0001008!1.46e-07!45;UBERON:0003133!1.85e-07!48;UBERON:0000991!2.30e-07!21;UBERON:0009196!2.30e-07!21;UBERON:0009117!2.30e-07!21;UBERON:0005564!2.30e-07!21;UBERON:0006853!2.34e-07!3;UBERON:0007685!2.34e-07!3;UBERON:0004134!2.34e-07!3;UBERON:0006555!3.70e-07!17;UBERON:0005103!3.70e-07!17;UBERON:0000083!3.70e-07!17;UBERON:0009201!3.70e-07!17;UBERON:0004819!3.70e-07!17;UBERON:0006553!3.70e-07!17;UBERON:0003074!3.70e-07!17;UBERON:0003060!3.70e-07!17;UBERON:0000466!4.29e-07!126;UBERON:0004176!6.21e-07!22 | |ontology_enrichment_uberon=UBERON:0005172!4.57e-11!55;UBERON:0005173!4.57e-11!55;UBERON:0009773!7.08e-11!12;UBERON:0001231!7.08e-11!12;UBERON:0004810!7.08e-11!12;UBERON:0002113!4.48e-10!27;UBERON:0003918!4.48e-10!27;UBERON:0005095!4.48e-10!27;UBERON:0007687!4.48e-10!27;UBERON:0002417!2.04e-09!61;UBERON:0000916!2.04e-09!61;UBERON:0003886!1.19e-08!63;UBERON:0002553!4.40e-08!70;UBERON:0000489!5.47e-08!32;UBERON:0005156!7.26e-08!59;UBERON:0000990!7.26e-08!59;UBERON:0006554!7.98e-08!44;UBERON:0004211!1.03e-07!16;UBERON:0001285!1.03e-07!16;UBERON:0007684!1.03e-07!16;UBERON:0003220!1.03e-07!16;UBERON:0004208!1.03e-07!16;UBERON:0001008!1.46e-07!45;UBERON:0003133!1.85e-07!48;UBERON:0000991!2.30e-07!21;UBERON:0009196!2.30e-07!21;UBERON:0009117!2.30e-07!21;UBERON:0005564!2.30e-07!21;UBERON:0006853!2.34e-07!3;UBERON:0007685!2.34e-07!3;UBERON:0004134!2.34e-07!3;UBERON:0006555!3.70e-07!17;UBERON:0005103!3.70e-07!17;UBERON:0000083!3.70e-07!17;UBERON:0009201!3.70e-07!17;UBERON:0004819!3.70e-07!17;UBERON:0006553!3.70e-07!17;UBERON:0003074!3.70e-07!17;UBERON:0003060!3.70e-07!17;UBERON:0000466!4.29e-07!126;UBERON:0004176!6.21e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0004211;4.60e-33;10!UBERON:0009773;4.60e-33;10!UBERON:0001231;4.60e-33;10!UBERON:0004810;4.60e-33;10!UBERON:0006555;8.47e-22;15!UBERON:0004819;8.47e-22;15!UBERON:0001285;8.47e-22;15!UBERON:0007684;8.47e-22;15!UBERON:0001851;5.10e-16;15!UBERON:0001225;3.06e-14;12!UBERON:0008987;3.06e-14;12!UBERON:0002113;2.50e-13;24!UBERON:0011143;2.50e-13;24!UBERON:0005172;6.90e-12;52!UBERON:0005173;6.90e-12;52!UBERON:0000353;2.33e-11;15!UBERON:0000489;6.86e-11;29!UBERON:0006554;1.69e-10;30!UBERON:0001008;1.69e-10;30!UBERON:0006853;3.50e-10;3!UBERON:0007685;3.50e-10;3!UBERON:0004134;3.50e-10;3!UBERON:0002417;5.92e-10;58!UBERON:0000916;5.92e-10;58!UBERON:0002107;6.78e-09;19!UBERON:0006925;6.78e-09;19!UBERON:0004911;9.78e-09;1!UBERON:0002368;1.30e-08;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,2.13e-33,10;UBERON:0004211,5.10e-22,15;UBERON:0009773,5.10e-22,15;UBERON:0001231,5.10e-22,15;UBERON:0001285,5.10e-22,15;UBERON:0007684,5.10e-22,15;UBERON:0004208,5.10e-22,15;UBERON:0006555,1.36e-20,16;UBERON:0004819,1.36e-20,16;UBERON:0005172,3.59e-19,54;UBERON:0005173,3.59e-19,54;UBERON:0002417,5.20e-17,60;UBERON:0000916,5.20e-17,60;UBERON:0001851,3.70e-16,15;UBERON:0001225,2.22e-14,12;UBERON:0008987,2.22e-14,12;UBERON:0002113,2.31e-12,26;UBERON:0003918,2.31e-12,26;UBERON:0011143,2.31e-12,26;UBERON:0005095,2.31e-12,26;UBERON:0007687,2.31e-12,26;UBERON:0000353,1.81e-11,15;UBERON:0005177,1.03e-10,101;UBERON:0000489,3.10e-10,31;UBERON:0006853,3.12e-10,3;UBERON:0007685,3.12e-10,3;UBERON:0004134,3.12e-10,3;UBERON:0009569,2.11e-09,112;UBERON:0002107,6.39e-09,19;UBERON:0006925,6.39e-09,19;UBERON:0008836,6.39e-09,19;UBERON:0002368,7.66e-09,35;UBERON:0004911,9.79e-09,1;UBERON:0008835,1.13e-07,22;UBERON:0003894,1.13e-07,22;UBERON:0009854,2.48e-07,23 | |||
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| ||
|short_description=p@chr6:24178792..24178829,+ | |short_description=p@chr6:24178792..24178829,+ | ||
}} | }} |
Latest revision as of 22:43, 30 July 2015
Short description: | p@chr6:24178792..24178829, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:24178792..24178829, + |
Coexpression cluster: | C860_serous_mesothelioma_Renal_clear_colon_endometrial_hepatoblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 2.13e-33 | 10 |
nephron tubule epithelial cell | 2.13e-33 | 10 |
epithelial cell of nephron | 5.10e-22 | 15 |
kidney cell | 2.45e-19 | 17 |
kidney epithelial cell | 2.45e-19 | 17 |
kidney cortical cell | 2.22e-14 | 12 |
renal cortical epithelial cell | 2.22e-14 | 12 |
hepatocyte | 3.11e-14 | 12 |
epithelial cell | 1.29e-12 | 253 |
brush border epithelial cell | 3.12e-10 | 3 |
kidney cortex tubule cell | 3.12e-10 | 3 |
epithelial cell of proximal tubule | 3.12e-10 | 3 |
serous secreting cell | 9.79e-09 | 1 |
endodermal cell | 3.11e-08 | 58 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 2.13e-33 | 10 |
nephron epithelium | 5.10e-22 | 15 |
renal tubule | 5.10e-22 | 15 |
nephron tubule | 5.10e-22 | 15 |
nephron | 5.10e-22 | 15 |
uriniferous tubule | 5.10e-22 | 15 |
nephrogenic mesenchyme | 5.10e-22 | 15 |
excretory tube | 1.36e-20 | 16 |
kidney epithelium | 1.36e-20 | 16 |
abdomen element | 3.59e-19 | 54 |
abdominal segment element | 3.59e-19 | 54 |
abdominal segment of trunk | 5.20e-17 | 60 |
abdomen | 5.20e-17 | 60 |
cortex | 3.70e-16 | 15 |
cortex of kidney | 2.22e-14 | 12 |
renal parenchyma | 2.22e-14 | 12 |
kidney | 2.31e-12 | 26 |
kidney mesenchyme | 2.31e-12 | 26 |
upper urinary tract | 2.31e-12 | 26 |
kidney rudiment | 2.31e-12 | 26 |
kidney field | 2.31e-12 | 26 |
parenchyma | 1.81e-11 | 15 |
trunk region element | 1.03e-10 | 101 |
cavitated compound organ | 3.10e-10 | 31 |
renal cortex tubule | 3.12e-10 | 3 |
region of nephron tubule | 3.12e-10 | 3 |
proximal tubule | 3.12e-10 | 3 |
subdivision of trunk | 2.11e-09 | 112 |
liver | 6.39e-09 | 19 |
digestive gland | 6.39e-09 | 19 |
liver bud | 6.39e-09 | 19 |
endocrine gland | 7.66e-09 | 35 |
epithelium of female gonad | 9.79e-09 | 1 |
hepatic diverticulum | 1.13e-07 | 22 |
liver primordium | 1.13e-07 | 22 |
digestive tract diverticulum | 2.48e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 1.08e-16 | 25 |
clear cell adenocarcinoma | 6.82e-15 | 2 |
cell type cancer | 3.62e-12 | 143 |
carcinoma | 9.33e-12 | 106 |
cancer | 6.75e-09 | 235 |
female reproductive organ cancer | 7.09e-09 | 27 |
ovary epithelial cancer | 9.79e-09 | 1 |
disease of cellular proliferation | 1.25e-08 | 239 |
reproductive organ cancer | 3.16e-08 | 29 |
disease of anatomical entity | 7.51e-08 | 39 |