FFCP PHASE1:Hg19::chr15:59903975..59903992,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9245 | |EntrezGene=9245 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4205 | |HGNC=4205 | ||
|TSSclassifier=strong | |||
|UniProt=O95395 | |UniProt=O95395 | ||
|association_with_transcript=0bp_to_ENST00000396065,ENST00000560585,NM_004751,uc002agd.2,uc002age.2_5end | |association_with_transcript=0bp_to_ENST00000396065,ENST00000560585,NM_004751,uc002agd.2,uc002age.2_5end | ||
|cluster_id=chr15:59903975..59903992,+ | |||
|coexpression_cluster_id=C1211 | |coexpression_cluster_id=C1211 | ||
|description=CAGE_peak_1_at_GCNT3_5end | |description=CAGE_peak_1_at_GCNT3_5end | ||
|id=chr15:59903975..59903992,+ | |id=chr15:59903975..59903992,+ | ||
|ontology_enrichment_celltype=CL:0000182;6.45e-10;12!CL:0002178;2.97e-07;3!CL:0000239;3.26e-07;3!CL:1000615;3.26e-07;3!CL:0002306;3.26e-07;3!CL:1000497;9.05e-07;17!CL:0002518;9.05e-07;17 | |ontology_enrichment_celltype=CL:1000497!5.62e-12!18;CL:0002518!5.62e-12!18;CL:0000066!1.85e-10!254;CL:1000507!4.30e-10!12;CL:1000494!4.30e-10!12;CL:1000449!6.01e-09!16;CL:0002681!6.03e-07!13;CL:0002584!6.03e-07!13 | ||
| | |ontology_enrichment_celltype_v019=CL:0000182;6.45e-10;12!CL:0002178;2.97e-07;3!CL:0000239;3.26e-07;3!CL:1000615;3.26e-07;3!CL:0002306;3.26e-07;3!CL:1000497;9.05e-07;17!CL:0002518;9.05e-07;17 | ||
|ontology_enrichment_disease=DOID:299;8.29e-21;25!DOID:4468;1.09e-10;2!DOID:4929;1.36e-10;2!DOID:3493;3.98e-10;2!DOID:3119;2.85e-08;14 | |ontology_enrichment_celltype_v019_2=CL:0000223,4.56e-11,58;CL:0000182,6.26e-10,12;CL:0002178,3.11e-07,3;CL:0000239,3.21e-07,3;CL:1000615,3.21e-07,3;CL:0002306,3.21e-07,3;CL:0000066,5.72e-07,253;CL:1000497,9.23e-07,17;CL:0002518,9.23e-07,17 | ||
|ontology_enrichment_uberon=UBERON:0005409;1.67e-38;22!UBERON:0000160;8.78e-37;17!UBERON:0004921;1.44e-22;33!UBERON:0000059;3.66e-21;11!UBERON:0002108;5.72e-16;4!UBERON:0004907;1.49e-15;5!UBERON:0001155;1.11e-13;9!UBERON:0001052;2.91e-11;4!UBERON:0002423;3.19e-11;25!UBERON:0001007;3.73e-09;81!UBERON:0002113;9.44e-09;24!UBERON:0011143;9.44e-09;24!UBERON:0005172;8.46e-08;52!UBERON:0005173;8.46e-08;52!UBERON:0001555;2.17e-07;54!UBERON:0002114;2.88e-07;2!UBERON:0006853;3.26e-07;3!UBERON:0007685;3.26e-07;3!UBERON:0004134;3.26e-07;3!UBERON:0000489;4.34e-07;29!UBERON:0002294;7.78e-07;7!UBERON:0001173;7.78e-07;7!UBERON:0006554;8.01e-07;30!UBERON:0001008;8.01e-07;30 | |ontology_enrichment_development_v019=UBERON:0003104;1.34e-19;31!UBERON:0009497;1.12e-17;13!UBERON:0004161;1.94e-15;11!UBERON:0003918;9.09e-08;10!UBERON:0007687;9.09e-08;10!UBERON:0001041;3.70e-07;30!CL:0000223;5.90e-07;58!UBERON:0006595;8.55e-07;86 | ||
|ontology_enrichment_disease=DOID:305!2.11e-16!106;DOID:299!8.19e-16!25;DOID:0050687!2.00e-10!143 | |||
|ontology_enrichment_disease_v019=DOID:299;8.29e-21;25!DOID:4468;1.09e-10;2!DOID:4929;1.36e-10;2!DOID:3493;3.98e-10;2!DOID:3119;2.85e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:299,8.90e-21,25;DOID:305,1.54e-13,106;DOID:4929,1.20e-10,2;DOID:4468,1.26e-10,2;DOID:3493,3.80e-10,2;DOID:0050687,5.21e-10,143;DOID:3119,2.92e-08,14;DOID:7,8.83e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0005409!9.81e-16!35;UBERON:0000160!9.34e-15!27;UBERON:0004921!4.66e-14!129;UBERON:0004185!4.66e-14!129;UBERON:0005172!5.38e-14!55;UBERON:0005173!5.38e-14!55;UBERON:0001007!4.56e-13!155;UBERON:0001555!4.56e-13!155;UBERON:0007026!4.56e-13!155;UBERON:0004119!1.65e-12!169;UBERON:0000925!1.65e-12!169;UBERON:0006595!1.65e-12!169;UBERON:0002417!5.43e-12!61;UBERON:0000916!5.43e-12!61;UBERON:0002113!6.77e-12!27;UBERON:0003918!6.77e-12!27;UBERON:0005095!6.77e-12!27;UBERON:0007687!6.77e-12!27;UBERON:0006554!1.36e-10!44;UBERON:0001008!2.98e-10!45;UBERON:0005177!3.67e-10!107;UBERON:0009773!4.30e-10!12;UBERON:0001231!4.30e-10!12;UBERON:0004810!4.30e-10!12;UBERON:0000077!8.19e-10!130;UBERON:0000059!1.42e-09!11;UBERON:0000489!1.76e-09!32;UBERON:0000466!2.10e-09!126;UBERON:0004211!6.01e-09!16;UBERON:0001285!6.01e-09!16;UBERON:0007684!6.01e-09!16;UBERON:0003220!6.01e-09!16;UBERON:0004208!6.01e-09!16;UBERON:0000058!6.09e-09!26;UBERON:0006555!2.60e-08!17;UBERON:0005103!2.60e-08!17;UBERON:0000083!2.60e-08!17;UBERON:0009201!2.60e-08!17;UBERON:0004819!2.60e-08!17;UBERON:0006553!2.60e-08!17;UBERON:0003074!2.60e-08!17;UBERON:0003060!2.60e-08!17;UBERON:0009497!3.66e-08!25;UBERON:0000015!3.66e-08!25;UBERON:0002423!3.66e-08!25;UBERON:0006235!3.66e-08!25;UBERON:0004161!3.66e-08!25;UBERON:0000080!9.55e-08!18;UBERON:0002120!9.55e-08!18;UBERON:0004875!9.55e-08!18;UBERON:0005721!9.55e-08!18;UBERON:0005754!9.55e-08!18;UBERON:0007297!9.55e-08!18;UBERON:0004907!1.46e-07!5;UBERON:0009569!1.48e-07!113;UBERON:0002294!2.56e-07!7;UBERON:0001173!2.56e-07!7;UBERON:0004912!2.56e-07!7;UBERON:0003104!2.76e-07!238;UBERON:0009142!2.76e-07!238;UBERON:0003929!4.70e-07!54;UBERON:0001225!6.03e-07!13;UBERON:0008987!6.03e-07!13;UBERON:0004876!8.63e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;1.67e-38;22!UBERON:0000160;8.78e-37;17!UBERON:0004921;1.44e-22;33!UBERON:0000059;3.66e-21;11!UBERON:0002108;5.72e-16;4!UBERON:0004907;1.49e-15;5!UBERON:0001155;1.11e-13;9!UBERON:0001052;2.91e-11;4!UBERON:0002423;3.19e-11;25!UBERON:0001007;3.73e-09;81!UBERON:0002113;9.44e-09;24!UBERON:0011143;9.44e-09;24!UBERON:0005172;8.46e-08;52!UBERON:0005173;8.46e-08;52!UBERON:0001555;2.17e-07;54!UBERON:0002114;2.88e-07;2!UBERON:0006853;3.26e-07;3!UBERON:0007685;3.26e-07;3!UBERON:0004134;3.26e-07;3!UBERON:0000489;4.34e-07;29!UBERON:0002294;7.78e-07;7!UBERON:0001173;7.78e-07;7!UBERON:0006554;8.01e-07;30!UBERON:0001008;8.01e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.73e-37,17;UBERON:0005409,9.95e-34,25;UBERON:0000059,3.50e-21,11;UBERON:0004921,2.14e-16,118;UBERON:0002108,5.20e-16,4;UBERON:0004907,1.41e-15,5;UBERON:0001007,9.00e-14,145;UBERON:0001555,9.00e-14,145;UBERON:0007026,9.00e-14,145;UBERON:0001155,1.17e-13,9;UBERON:0009854,2.62e-12,23;UBERON:0005172,3.60e-12,54;UBERON:0005173,3.60e-12,54;UBERON:0004119,5.50e-12,160;UBERON:0000925,5.50e-12,160;UBERON:0006595,5.50e-12,160;UBERON:0001052,2.81e-11,4;UBERON:0009497,3.01e-11,25;UBERON:0000015,3.01e-11,25;UBERON:0002423,3.01e-11,25;UBERON:0006235,3.01e-11,25;UBERON:0004161,3.01e-11,25;UBERON:0009856,9.63e-11,26;UBERON:0002417,1.10e-10,60;UBERON:0000916,1.10e-10,60;UBERON:0005177,6.09e-10,101;UBERON:0008835,6.35e-10,22;UBERON:0003894,6.35e-10,22;UBERON:0007499,1.28e-08,25;UBERON:0003929,1.45e-08,54;UBERON:0002113,5.52e-08,26;UBERON:0003918,5.52e-08,26;UBERON:0011143,5.52e-08,26;UBERON:0005095,5.52e-08,26;UBERON:0007687,5.52e-08,26;UBERON:0003104,2.11e-07,160;UBERON:0009142,2.11e-07,160;UBERON:0002114,2.66e-07,2;UBERON:0006853,3.21e-07,3;UBERON:0007685,3.21e-07,3;UBERON:0004134,3.21e-07,3;UBERON:0011216,5.66e-07,223 | |||
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| ||
|short_description=p1@GCNT3 | |short_description=p1@GCNT3 | ||
}} | }} |
Latest revision as of 09:03, 18 September 2015
Short description: | p1@GCNT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GCNT3_5end |
Coexpression cluster: | C1211_small_lung_bile_clear_colon_rectal_tubular |
Association with transcript: | 0bp_to_ENST00000396065, ENST00000560585, NM_004751, uc002agd.2, uc002age.2_5end |
EntrezGene: | GCNT3 |
HGNC: | 4205 |
UniProt: | O95395 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 4.56e-11 | 58 |
hepatocyte | 6.26e-10 | 12 |
epithelial cell of stomach | 3.11e-07 | 3 |
brush border epithelial cell | 3.21e-07 | 3 |
kidney cortex tubule cell | 3.21e-07 | 3 |
epithelial cell of proximal tubule | 3.21e-07 | 3 |
epithelial cell | 5.72e-07 | 253 |
kidney cell | 9.23e-07 | 17 |
kidney epithelial cell | 9.23e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 8.90e-21 | 25 |
carcinoma | 1.54e-13 | 106 |
tubular adenocarcinoma | 1.20e-10 | 2 |
clear cell adenocarcinoma | 1.26e-10 | 2 |
signet ring cell adenocarcinoma | 3.80e-10 | 2 |
cell type cancer | 5.21e-10 | 143 |
gastrointestinal system cancer | 2.92e-08 | 14 |
disease of anatomical entity | 8.83e-07 | 39 |