FF:11601-120H8: Difference between revisions

Latest revision as of 18:11, 4 June 2020

Name:	Hepatic Sinusoidal Endothelial Cells, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs12092
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	liver
dev stage	NA
sex	NA
age	NA
cell type	hepatic sinusoidal endothelial cell
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	lot:sc05
catalog number	SC5005
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004955

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12092		CAGE		DRX008302		DRR009174

Accession ID Hg19

Library id		BAM		CTSS
CNhs12092		DRZ000599		DRZ001984

Accession ID Hg38

Library id		BAM		CTSS
CNhs12092		DRZ011949		DRZ013334

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00004955

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10008.AGTTCC		sRNA-Seq		DRX037119		DRR041485

Accession ID Hg19

Library id		BAM		CTSS
SRhi10008.AGTTCC		DRZ007127

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.157
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.157
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.974
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.237
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0564
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.491
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.253
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.381
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0885
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0489
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.548
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0117
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.458
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.381
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	1.001
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.381
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.381
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12092

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.168
MA0003.1	MA0003.1	0.186
MA0004.1	MA0004.1	0.523
MA0006.1	MA0006.1	0.329
MA0007.1	MA0007.1	0.0582
MA0009.1	MA0009.1	0.705
MA0014.1	MA0014.1	0.627
MA0017.1	MA0017.1	0.228
MA0018.2	MA0018.2	0.0101
MA0019.1	MA0019.1	0.317
MA0024.1	MA0024.1	0.0371
MA0025.1	MA0025.1	0.921
MA0027.1	MA0027.1	0.419
MA0028.1	MA0028.1	4.2207e-4
MA0029.1	MA0029.1	0.259
MA0030.1	MA0030.1	0.0964
MA0031.1	MA0031.1	0.0381
MA0035.2	MA0035.2	0.0183
MA0038.1	MA0038.1	0.646
MA0039.2	MA0039.2	0.992
MA0040.1	MA0040.1	0.453
MA0041.1	MA0041.1	0.36
MA0042.1	MA0042.1	0.82
MA0043.1	MA0043.1	8.13913e-4
MA0046.1	MA0046.1	0.07
MA0047.2	MA0047.2	0.411
MA0048.1	MA0048.1	0.766
MA0050.1	MA0050.1	1.05287e-4
MA0051.1	MA0051.1	0.00358
MA0052.1	MA0052.1	0.0463
MA0055.1	MA0055.1	0.625
MA0057.1	MA0057.1	0.212
MA0058.1	MA0058.1	0.636
MA0059.1	MA0059.1	0.272
MA0060.1	MA0060.1	0.495
MA0061.1	MA0061.1	0.171
MA0062.2	MA0062.2	1.19908e-7
MA0065.2	MA0065.2	0.0441
MA0066.1	MA0066.1	0.0533
MA0067.1	MA0067.1	0.0799
MA0068.1	MA0068.1	0.868
MA0069.1	MA0069.1	0.907
MA0070.1	MA0070.1	0.00846
MA0071.1	MA0071.1	0.021
MA0072.1	MA0072.1	0.557
MA0073.1	MA0073.1	0.747
MA0074.1	MA0074.1	0.374
MA0076.1	MA0076.1	4.76126e-6
MA0077.1	MA0077.1	0.00391
MA0078.1	MA0078.1	0.0274
MA0079.2	MA0079.2	0.917
MA0080.2	MA0080.2	0.658
MA0081.1	MA0081.1	0.223
MA0083.1	MA0083.1	1.18894e-4
MA0084.1	MA0084.1	0.945
MA0087.1	MA0087.1	0.516
MA0088.1	MA0088.1	0.811
MA0090.1	MA0090.1	0.0682
MA0091.1	MA0091.1	0.0899
MA0092.1	MA0092.1	0.276
MA0093.1	MA0093.1	0.598
MA0099.2	MA0099.2	2.598e-5
MA0100.1	MA0100.1	0.246
MA0101.1	MA0101.1	0.51
MA0102.2	MA0102.2	7.6544e-5
MA0103.1	MA0103.1	0.472
MA0104.2	MA0104.2	0.848
MA0105.1	MA0105.1	0.216
MA0106.1	MA0106.1	0.158
MA0107.1	MA0107.1	0.192
MA0108.2	MA0108.2	2.46255e-12
MA0111.1	MA0111.1	0.646
MA0112.2	MA0112.2	0.00369
MA0113.1	MA0113.1	0.102
MA0114.1	MA0114.1	0.483
MA0115.1	MA0115.1	0.622
MA0116.1	MA0116.1	0.144
MA0117.1	MA0117.1	0.365
MA0119.1	MA0119.1	0.0675
MA0122.1	MA0122.1	0.831
MA0124.1	MA0124.1	0.501
MA0125.1	MA0125.1	0.773
MA0131.1	MA0131.1	0.0715
MA0135.1	MA0135.1	0.0722
MA0136.1	MA0136.1	0.0419
MA0137.2	MA0137.2	0.0578
MA0138.2	MA0138.2	0.182
MA0139.1	MA0139.1	0.986
MA0140.1	MA0140.1	0.0574
MA0141.1	MA0141.1	0.033
MA0142.1	MA0142.1	0.476
MA0143.1	MA0143.1	0.664
MA0144.1	MA0144.1	0.724
MA0145.1	MA0145.1	0.189
MA0146.1	MA0146.1	0.102
MA0147.1	MA0147.1	0.879
MA0148.1	MA0148.1	0.239
MA0149.1	MA0149.1	0.284
MA0150.1	MA0150.1	0.178
MA0152.1	MA0152.1	0.549
MA0153.1	MA0153.1	0.372
MA0154.1	MA0154.1	0.053
MA0155.1	MA0155.1	0.041
MA0156.1	MA0156.1	0.0306
MA0157.1	MA0157.1	0.395
MA0159.1	MA0159.1	0.316
MA0160.1	MA0160.1	0.184
MA0162.1	MA0162.1	0.0992
MA0163.1	MA0163.1	0.149
MA0164.1	MA0164.1	0.461
MA0258.1	MA0258.1	0.00858
MA0259.1	MA0259.1	0.779

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12092

Novel motif	Logo	P-value
1	1	0.655
10	10	0.521
100	100	0.979
101	101	0.651
102	102	0.943
103	103	0.621
104	104	0.22
105	105	0.0503
106	106	0.0175
107	107	0.00964
108	108	0.286
109	109	0.184
11	11	0.0785
110	110	0.149
111	111	0.8
112	112	0.402
113	113	0.951
114	114	0.327
115	115	0.763
116	116	0.21
117	117	0.941
118	118	0.871
119	119	0.228
12	12	0.636
120	120	0.0995
121	121	0.819
122	122	0.611
123	123	0.396
124	124	0.864
125	125	0.382
126	126	0.799
127	127	0.379
128	128	0.0249
129	129	0.196
13	13	0.431
130	130	0.246
131	131	0.56
132	132	0.235
133	133	0.289
134	134	0.881
135	135	0.138
136	136	0.411
137	137	0.538
138	138	0.978
139	139	0.087
14	14	0.865
140	140	0.979
141	141	0.879
142	142	0.345
143	143	0.00113
144	144	0.856
145	145	0.0855
146	146	0.226
147	147	0.251
148	148	0.79
149	149	0.0232
15	15	0.596
150	150	0.189
151	151	0.339
152	152	0.0501
153	153	0.382
154	154	0.477
155	155	0.844
156	156	0.573
157	157	0.146
158	158	0.724
159	159	0.822
16	16	0.241
160	160	0.00862
161	161	0.28
162	162	0.206
163	163	0.757
164	164	0.89
165	165	0.126
166	166	0.921
167	167	0.184
168	168	0.341
169	169	0.0283
17	17	0.123
18	18	0.0888
19	19	0.0759
2	2	0.214
20	20	0.363
21	21	0.714
22	22	0.113
23	23	0.0607
24	24	0.344
25	25	0.646
26	26	0.0628
27	27	0.206
28	28	0.364
29	29	0.893
3	3	0.488
30	30	0.31
31	31	0.388
32	32	9.41698e-4
33	33	0.542
34	34	0.147
35	35	0.659
36	36	0.607
37	37	0.291
38	38	0.236
39	39	0.302
4	4	0.252
40	40	0.0204
41	41	0.301
42	42	0.605
43	43	0.199
44	44	0.408
45	45	0.212
46	46	0.127
47	47	0.411
48	48	0.202
49	49	0.244
5	5	0.663
50	50	0.459
51	51	0.266
52	52	0.353
53	53	0.937
54	54	0.302
55	55	0.631
56	56	0.247
57	57	0.231
58	58	0.991
59	59	0.00797
6	6	0.752
60	60	0.239
61	61	0.811
62	62	0.73
63	63	0.21
64	64	0.201
65	65	0.0199
66	66	0.408
67	67	0.54
68	68	0.00372
69	69	0.0115
7	7	0.778
70	70	0.138
71	71	0.228
72	72	0.737
73	73	0.0595
74	74	0.877
75	75	0.914
76	76	0.265
77	77	0.0431
78	78	0.517
79	79	0.0209
8	8	0.0674
80	80	0.4
81	81	0.816
82	82	0.457
83	83	0.692
84	84	0.133
85	85	0.0528
86	86	0.84
87	87	0.433
88	88	0.548
89	89	0.109
9	9	0.139
90	90	0.0173
91	91	0.0826
92	92	0.262
93	93	0.6
94	94	0.462
95	95	0.228
96	96	0.997
97	97	0.434
98	98	0.4
99	99	0.0972

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12092

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000076 hepatic sinusoidal endothelial cell sample
FF:0000210 human sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000215 (barrier cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000182 (hepatocyte)
0002262 (endothelial cell of sinusoid)
1000398 (endothelial cell of hepatic sinusoid)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0001007 (digestive system)
0000055 (vessel)
0001281 (hepatic sinusoid)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0005911 (endo-epithelium)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0000353 (parenchyma)
0003497 (abdomen blood vessel)
0003909 (sinusoid)
0005177 (trunk region element)
0002365 (exocrine gland)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0005172 (abdomen element)
0006925 (digestive gland)
0002049 (vasculature)
0002530 (gland)
0003835 (abdominal segment blood vessel)
0003513 (trunk blood vessel)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0005173 (abdominal segment element)
0004535 (cardiovascular system)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0001280 (liver parenchyma)
0004647 (liver lobule)
0002330 (exocrine system)
0004537 (blood vasculature)
0000916 (abdomen)
0002423 (hepatobiliary system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000076 (hepatic sinusoidal endothelial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)
CL:0000223 (endodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004955
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004955
+|accession_numbers=CAGE;DRX008302;DRR009174;DRZ000599;DRZ001984;DRZ011949;DRZ013334
+|accession_numbers_RNASeq=sRNA-Seq;DRX037119;DRR041485;DRZ007127
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0001007,UBERON:0000055,UBERON:0001281,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0005911,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0009569,UBERON:0002368,UBERON:0000353,UBERON:0003497,UBERON:0003909,UBERON:0005177,UBERON:0002365,UBERON:0007500,UBERON:0001981,UBERON:0005172,UBERON:0006925,UBERON:0002049,UBERON:0002530,UBERON:0003835,UBERON:0003513,UBERON:0010317,UBERON:0007798,UBERON:0005173,UBERON:0004535,UBERON:0002417,UBERON:0000949,UBERON:0001280,UBERON:0004647,UBERON:0002330,UBERON:0004537,UBERON:0000916,UBERON:0002423,UBERON:0001009
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000181,CL:0000417,CL:0000668,CL:0000215,CL:0000412,CL:0000255,CL:0000115,CL:0000182,CL:0002262,CL:1000398
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr12:81110684..81110700,+!p1@MYF5!2.41!258.04!MYF5;;chr20:62680984..62680999,-!p1@SOX18!2.37!302.92!SOX18;;chr1:40105299..40105326,-!p1@HEYL!2.04!107.99!HEYL;;chr8:55370487..55370503,+!p1@SOX17!1.82!64.51!SOX17;;chr8:10588010..10588030,-!p1@SOX7!1.73!53.29!SOX7;;chr17:6926362..6926377,+!p1@BCL6B!1.71!50.49!BCL6B;;chr2:237076992..237077008,-!p2@GBX2!1.65!43.47!GBX2;;chr2:237077022..237077038,-!p1@GBX2!1.63!42.07!GBX2;;chr11:46299199..46299233,+!p1@CREB3L1!1.58!185.12!CREB3L1;;chr12:96588368..96588394,+!p3@ELK3!1.58!96.77!ELK3;;chr17:1959369..1959388,+!p2@HIC1!1.51!79.94!HIC1;;chr11:61520075..61520136,+!p1@C11orf9!1.48!60.30!C11orf9;;chr21:39870339..39870443,-!p1@ERG!1.48!29.45!ERG;;chr14:29235961..29236008,+!p1@FOXG1!1.40!23.84!FOXG1;;chr8:11561684..11561751,+!p1@GATA4!1.40!23.84!GATA4;;chr2:5832508..5832524,+!p1@SOX11!1.34!21.04!SOX11;;chr17:46622205..46622218,-!p3@HOXB2!1.31!22.44!HOXB2;;chr10:94449703..94449718,+!p1@HHEX!1.29!70.12!HHEX;;chr6:134210243..134210257,+!p1@TCF21!1.28!18.23!TCF21;;chr17:46671108..46671147,-!p1@HOXB5!1.25!16.83!HOXB5;;chr14:29236269..29236285,+!p3@FOXG1!1.25!16.83!FOXG1;;chr5:92918919..92918942,+!p1@NR2F1!1.24!71.52!NR2F1;;chr12:66218255..66218304,+!p3@HMGA2!1.24!43.47!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!1.22!70.12!FOXD1;;chr19:13213511..13213545,-!p2@LYL1!1.22!16.83!LYL1;;chr19:46801639..46801699,+!p1@HIF3A!1.22!15.43!HIF3A;;chr6:34204921..34204939,+!p3@HMGA1!1.17!405.30!HMGA1;;chr14:61116183..61116208,-!p1@SIX1!1.17!51.89!SIX1;;chr11:46299539..46299620,+!p2@CREB3L1!1.15!22.44!CREB3L1;;chr16:86600426..86600441,+!p1@FOXC2!1.13!30.85!FOXC2;;chr4:174451370..174451387,-!p1@HAND2!1.13!12.62!HAND2;;chr9:124991204..124991246,-!p1@LHX6!1.13!12.62!LHX6;;chr12:66218598..66218645,+!p2@HMGA2!1.11!54.69!HMGA2;;chr5:72744445..72744466,-!p2@FOXD1!1.11!19.63!FOXD1;;chr20:590944..590960,-!p1@TCF15!1.09!11.22!TCF15;;chr20:42543441..42543497,+!p1@TOX2!1.08!50.49!TOX2;;chr17:41623692..41623715,-!p1@ETV4!1.08!47.68!ETV4;;chr17:46622229..46622257,-!p6@HOXB2!1.07!12.62!HOXB2;;chr5:72743793..72743855,-!p4@FOXD1!1.07!12.62!FOXD1;;chr12:124873357..124873401,-!p1@NCOR2!1.04!117.80!NCOR2;;chr17:46622114..46622138,-!p4@HOXB2!1.04!15.43!HOXB2;;chr1:23885981..23886002,-!p1@ID3!1.03!1702.54!ID3;;chr17:1958388..1958404,+!p1@HIC1!1.03!63.11!HIC1;;chr12:66218212..66218244,+!p5@HMGA2!1.02!14.02!HMGA2;;chr17:46655704..46655718,-!p2@HOXB4!1.01!14.02!HOXB4;;chr2:46524537..46524553,+!p1@EPAS1!0.99!890.54!EPAS1;;chr7:149470641..149470694,-!p1@ZNF467!0.98!39.27!ZNF467;;chr8:80679993..80680011,-!p1@HEY1!0.98!12.62!HEY1;;chr17:46675420..46675465,-!p3@HOXB6!0.98!9.82!HOXB6;;chr20:48599506..48599526,+!p1@SNAI1!0.97!54.69!SNAI1;;chr18:19749541..19749557,+!p1@GATA6!0.97!26.65!GATA6;;chr7:149470540..149470596,-!p2@ZNF467!0.97!11.22!ZNF467;;chr7:1577899..1577943,+!p3@MAFK!0.97!8.41!MAFK;;chr7:35293685..35293718,-!p1@TBX20!0.97!8.41!TBX20;;chr1:40105347..40105358,-!p2@HEYL!0.97!8.41!HEYL;;chr1:6479968..6479986,-!p1@HES2!0.97!8.41!HES2;;chr18:19749353..19749367,+!p4@GATA6!0.97!8.41!GATA6;;chr10:131762504..131762555,-!p1@EBF3!0.97!8.41!EBF3;;chr12:54447637..54447659,+!p4@HOXC4!0.97!8.41!HOXC4;;chr14:29234581..29234601,+!p2@FOXG1!0.97!8.41!FOXG1;;chr12:54447599..54447630,+!p3@HOXC4!0.95!9.82!HOXC4;;chr16:86544113..86544145,+!p1@FOXF1!0.95!9.82!FOXF1;;chr5:92918956..92918969,+!p4@NR2F1!0.94!8.41!NR2F1;;chr17:46621937..46621966,-!p2@HOXB2!0.93!21.04!HOXB2;;chr10:94449675..94449694,+!p2@HHEX!0.93!21.04!HHEX;;chr8:106330656..106330684,+!p1@ZFPM2!0.92!19.63!ZFPM2;;chr17:46622070..46622109,-!p1@HOXB2!0.92!16.83!HOXB2;;chr15:83953397..83953425,-!p1@BNC1!0.92!8.41!BNC1;;chr12:66218378..66218401,+!p6@HMGA2!0.91!11.22!HMGA2;;chr11:46333934..46333963,+!p5@CREB3L1!0.90!7.01!CREB3L1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.90!7.01!HOXC5;;chr17:46675469..46675481,-!p4@HOXB6!0.90!7.01!HOXB6;;chr19:13213465..13213478,-!p7@LYL1!0.90!7.01!LYL1;;chr22:19748231..19748317,+!p1@TBX1!0.90!7.01!TBX1;;chr2:45236540..45236577,-!p1@SIX2!0.90!7.01!SIX2;;chr4:174450089..174450153,-!p2@HAND2!0.90!7.01!HAND2;;chr3:52001448..52001478,-!p2@PCBP4!0.89!99.57!PCBP4;;chr20:42543506..42543549,+!p2@TOX2!0.89!16.83!TOX2;;chr18:19749386..19749404,+!p2@GATA6!0.89!9.82!GATA6;;chr1:156470494..156470505,-!p3@MEF2D!0.88!9.82!MEF2D;;chr3:128206762..128206781,-!p2@GATA2!0.87!42.07!GATA2;;chr7:19157248..19157268,-!p1@TWIST1!0.86!18.23!TWIST1;;chr17:46622440..46622477,-!p5@HOXB2!0.86!7.01!HOXB2;;chr11:65667846..65667868,-!p1@FOSL1!0.85!172.50!FOSL1;;chr18:19749517..19749531,+!p3@GATA6!0.85!11.22!GATA6;;chr20:50721803..50721857,-!p2@ZFP64!0.85!9.82!ZFP64;;chr1:23886132..23886156,-!p2@ID3!0.85!7.01!ID3;;chr8:49833978..49833996,-!p1@SNAI2!0.84!129.02!SNAI2;;chr6:34204672..34204692,+!p1@HMGA1!0.83!699.81!HMGA1;;chr19:49865646..49865718,-!p1@TEAD2!0.83!53.29!TEAD2;;chr16:54320101..54320125,-!p4@IRX3!0.83!8.41!IRX3;;chr19:15543565..15543579,-!p2@WIZ!0.82!26.65!WIZ;;chr1:935467..935484,-!p1@HES4!0.82!26.65!HES4;;chr12:66218183..662182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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000182;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000398;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000353;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002294;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003513;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
+|ffid_belonging_in_development=CL:0000134,CL:0000222,CL:0000223
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 37: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor2.CNhs12092.11601-120H8.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor2.CNhs12092.11601-120H8.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor2.CNhs12092.11601-120H8.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor2.CNhs12092.11601-120H8.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Hepatic%2520Sinusoidal%2520Endothelial%2520Cells%252c%2520donor2.CNhs12092.11601-120H8.hg38.nobarcode.ctss.bed.gz
 |id=FF:11601-120H8
 |is_a=EFO:0002091;;FF:0000076;;FF:0000210
 |is_obsolete=
+|library_id=CNhs12092
+|library_id_phase_based=2:CNhs12092
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11601
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.AGTTCC.11601
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11601
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.AGTTCC.11601
 |name=Hepatic Sinusoidal Endothelial Cells, donor2
 |namespace=FANTOM5
@@ Line 45: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12092,LSID839,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10008,,,
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 |rna_box=120
 |rna_catalog_number=SC5005
@@ Line 59: / Line 82: @@
 |rna_tube_id=120H8
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10008.AGTTCC
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 81: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11601-120H8;search_select_hide=table117:FF:11601-120H8
 }}

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FF:11601-120H8: Difference between revisions

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Latest revision as of 18:11, 4 June 2020

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