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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005256
|accession_numbers=CAGE;DRX008025;DRR008897;DRZ000322;DRZ001707;DRZ011672;DRZ013057
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255,CL:0000039,CL:0000586
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255,CL:0000039,CL:0000586
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
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3,+!p13@HMGA2!0.30!1.00!HMGA2;;chr13:28543431..28543487,-!p1@CDX2!0.30!1.00!CDX2;;chr13:72441074..72441172,-!p2@DACH1!0.30!1.00!DACH1;;chr14:45722418..45722426,-!p6@MIS18BP1!0.30!1.00!MIS18BP1;;chr7:4721885..4721945,+!p1@FOXK1!0.29!53.65!FOXK1;;chr5:34929677..34929789,+!p1@DNAJC21!0.29!50.89!DNAJC21;;chr19:50529247..50529296,+!p1@ZNF473!0.29!10.78!ZNF473;;chr19:50169013..50169062,-!p2@IRF3!0.29!9.53!IRF3;;chr20:46130672..46130686,+!p2@NCOA3!0.29!7.27!NCOA3;;chr5:178157651..178157689,-!p1@ZNF354A!0.29!6.52!ZNF354A;;chr5:124082322..124082364,-!p1@ZNF608!0.29!3.76!ZNF608;;chr20:49547731..49547753,-!p4@ADNP!0.29!3.76!ADNP;;chr19:35168633..35168652,+!p2@ZNF302!0.29!3.51!ZNF302;;chr2:113033141..113033162,+!p2@ZC3H6!0.29!3.01!ZC3H6;;chr16:30596963..30596999,-!p3@ZNF785!0.29!2.76!ZNF785;;chr1:35656352..35656383,-!p7@SFPQ!0.29!2.26!SFPQ;;chr3:42947600..42947680,+!p1@ZNF662!0.29!1.75!ZNF662;;chr6:31515311..31515330,+!p3@NFKBIL1!0.29!1.75!NFKBIL1;;chr11:47270477..47270494,+!p4@NR1H3!0.29!1.75!NR1H3;;chr11:10876220..10876224,-!p3@ZBED5!0.29!1.25!ZBED5;;chr17:41623075..41623101,-!p9@ETV4!0.29!1.25!ETV4;;chr2:43453734..43453751,-!p1@ZFP36L2!0.28!185.77!ZFP36L2;;chr20:34359925..34359991,+!p1@PHF20!0.28!75.96!PHF20;;chr1:6845497..6845561,+!p1@CAMTA1!0.28!63.18!CAMTA1;;chr2:48541789..48541874,+!p1@FOXN2!0.28!38.61!FOXN2;;chr11:130184753..130184824,-!p1@ZBTB44!0.28!23.07!ZBTB44;;chr10:124768300..124768334,-!p1@IKZF5!0.28!20.81!IKZF5;;chr14:90085458..90085557,-!p1@FOXN3!0.28!17.30!FOXN3;;chr8:71316021..71316068,-!p1@NCOA2!0.28!15.54!NCOA2;;chr19:37064145..37064216,-!p1@ZNF529!0.28!14.04!ZNF529;;chr1:8877692..8877732,-!p1@RERE!0.28!13.29!RERE;;chr19:56652643..56652683,+!p1@ZNF444!0.28!8.77!ZNF444;;chr21:30671211..30671234,+!p3@BACH1!0.28!7.77!BACH1;;chr15:77713025..77713081,+!p2@HMG20A!0.28!6.77!HMG20A;;chr2:242576641..242576731,-!p2@THAP4!0.28!6.02!THAP4;;chr21:34144115..34144138,-!p2@GCFC1!0.28!4.26!GCFC1;;chr12:104532004..104532033,-!p4@NFYB!0.28!4.01!NFYB;;chr13:45011349..45011391,-!p4@TSC22D1!0.28!3.51!TSC22D1;;chr19:12035878..12035902,+!p2@ZNF700,p2@ZNF763!0.28!3.26!ZNF700;;chr14:61191018..61191048,-!p1@SIX4!0.28!3.01!SIX4;;chr1:42501569..42501614,-!p1@HIVEP3!0.28!2.76!HIVEP3;;chr4:95128841..95128865,+!p4@SMARCAD1!0.28!2.76!SMARCAD1;;chr12:53853054..53853092,+!p6@PCBP2!0.28!2.51!PCBP2;;chr19:21324863..21324874,+!p2@ZNF431!0.28!2.26!ZNF431;;chr5:178287021..178287042,+!p2@ZNF354B!0.28!2.01!ZNF354B;;chr6:27356745..27356777,+!p1@ZNF391!0.28!2.01!ZNF391;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.28!2.01!PCBP2;;chr9:88969226..88969237,-!p4@ZCCHC6!0.28!1.75!ZCCHC6;;chr16:3930724..3930735,-!p2@CREBBP!0.28!1.50!CREBBP;;chr1:212873267..212873332,-!p1@BATF3!0.28!1.50!BATF3;;chr20:46130727..46130734,+!p4@NCOA3!0.28!1.50!NCOA3;;chr12:19593515..19593573,+!p9@AEBP2!0.28!1.50!AEBP2;;chr19:24216327..24216345,+!p5@ZNF254!0.28!1.25!ZNF254;;chr1:41204530..41204541,+!p8@NFYC!0.28!1.25!NFYC;;chr7:99679381..99679392,-!p4@ZNF3!0.28!1.25!ZNF3;;chr1:78444738..78444773,-!p1@FUBP1!0.27!183.02!FUBP1;;chr2:187350973..187351072,+!p1@ZC3H15!0.27!146.41!ZC3H15;;chr2:74374995..74375055,-!p1@BOLA3!0.27!74.21!BOLA3;;chr7:129251531..129251601,+!p1@NRF1!0.27!18.05!NRF1;;chr7:148936732..148936761,+!p1@ZNF212!0.27!11.28!ZNF212;;chr2:61108695..61108753,+!p1@REL!0.27!11.03!REL;;chr10:97889784..97889827,+!p1@ZNF518A!0.27!7.52!ZNF518A;;chr19:45909594..45909625,-!p2@PPP1R13L!0.27!7.02!PPP1R13L;;chrX:46404811..46404869,-!p1@ZNF674!0.27!5.52!ZNF674;;chr16:68564003..68564050,+!p2@ZFP90!0.27!3.76!ZFP90;;chr3:14989050..14989069,+!p2@NR2C2!0.27!3.26!NR2C2;;chr3:125094150..125094176,-!p2@ZNF148!0.27!3.01!ZNF148;;chr10:98592674..98592724,+!p2@LCOR!0.27!2.51!LCOR;;chr9:116638634..116638664,+!p2@ZNF618!0.27!2.51!ZNF618;;chr16:30621615..30621660,-!p2@ZNF689!0.27!2.26!ZNF689;;chr1:43148625..43148710,+!p3@YBX1!0.27!2.26!YBX1;;chr1:205649614..205649663,-!p1@SLC45A3,p5@ELK4!0.27!2.01!ELK4;;
|expression_enrichment_score=chr20:31350184..31350200,+!p1@DNMT3B!2.58!761.15!DNMT3B;;chr10:135043702..135043729,+!p1@UTF1!2.56!361.77!UTF1;;chr10:135043493..135043510,+!p2@UTF1!2.42!263.74!UTF1;;chr3:181429704..181429722,+!p1@SOX2!2.31!201.07!SOX2;;chr6:31138439..31138475,-!p1@POU5F1!2.13!135.38!POU5F1;;chr8:145701192..145701241,-!p1@FOXH1!2.06!115.07!FOXH1;;chr2:122042770..122042785,-!p1@TFCP2L1!2.01!100.53!TFCP2L1;;chr1:201979703..201979721,+!p2@ELF3!1.93!84.74!ELF3;;chr6:15246200..15246214,+!p2@JARID2!1.85!184.02!JARID2;;chr4:188916918..188916942,+!p1@ZFP42!1.83!66.44!ZFP42;;chr7:63505799..63505904,+!p1@ZNF727!1.76!57.16!ZNF727;;chr1:201979743..201979762,+!p1@ELF3!1.75!55.41!ELF3;;chrX:136648279..136648295,+!p1@ZIC3!1.75!54.90!ZIC3;;chr17:46622205..46622218,-!p3@HOXB2!1.74!62.68!HOXB2;;chr8:70983476..70983493,-!p1@PRDM14!1.72!51.65!PRDM14;;chr12:7941989..7942014,+!p1@NANOG!1.71!50.64!NANOG;;chr2:16080659..16080685,+!p1@MYCN!1.70!49.64!MYCN;;chr12:8034651..8034657,+!p@chr12:8034651..8034657,+!1.70!48.89!NANOGP1;;chr16:3149278..3149305,-!p1@ZSCAN10!1.67!45.63!ZSCAN10;;chr10:70320074..70320106,+!p1@TET1!1.64!83.49!TET1;;chr20:55204351..55204377,+!p1@TFAP2C!1.58!47.13!TFAP2C;;chrX:136648643..136648711,+!p2@ZIC3!1.58!37.10!ZIC3;;chr10:135051353..135051367,+!p1@VENTX!1.57!36.10!VENTX;;chr7:14028743..14028799,-!p3@ETV1!1.56!44.63!ETV1;;chr19:22966893..22966924,-!p2@ZNF99!1.55!34.85!ZNF99;;chr12:19556998..19557013,+!p6@AEBP2!1.53!32.84!AEBP2;;chr17:41622925..41622976,-!p3@ETV4!1.51!46.63!ETV4;;chr12:19556960..19556982,+!p10@AEBP2!1.51!31.34!AEBP2;;chr2:25475120..25475176,-!p2@DNMT3A!1.48!39.36!DNMT3A;;chr3:181429741..181429767,+!p2@SOX2!1.47!28.83!SOX2;;chr9:96717629..96717644,-!p1@BARX1!1.46!27.83!BARX1;;chr2:16081912..16081931,+!p2@MYCN!1.45!27.33!MYCN;;chr12:8044970..8044999,+!p@chr12:8044970..8044999,+!1.45!27.33!NANOGP1;;chr7:26191809..26191890,+!p1@NFE2L3!1.44!125.86!NFE2L3;;chr17:41623692..41623715,-!p1@ETV4!1.43!107.05!ETV4;;chr8:37963466..37963506,+!p3@ASH2L!1.43!32.34!ASH2L;;chr6:29648890..29648944,-!p1@ZFP57!1.41!24.57!ZFP57;;chr10:135043690..135043701,+!p4@UTF1!1.39!23.57!UTF1;;chr12:8045030..8045044,+!p@chr12:8045030..8045044,+!1.38!23.07!NANOGP1;;chr21:45681774..45681821,-!p1@DNMT3L!1.38!22.81!DNMT3L;;chr17:7493405..7493419,-!p1@SOX15!1.37!22.56!SOX15;;chr4:299227..299272,-!p1@ZNF732!1.36!21.81!ZNF732;;chr19:45579725..45579743,-!p1@ZNF296!1.35!94.27!ZNF296;;chr17:47892398..47892407,+!p2@KAT7!1.35!21.31!KAT7;;chr20:50419055..50419066,-!p3@SALL4!1.34!20.81!SALL4;;chrX:136648297..136648319,+!p3@ZIC3!1.34!20.81!ZIC3;;chr12:3068544..3068597,+!p1@TEAD4!1.33!119.34!TEAD4;;chr7:57509877..57509895,+!p1@ZNF716!1.32!20.06!ZNF716;;chr1:158975744..158975769,+!p10@IFI16!1.32!20.06!IFI16;;chr10:135043750..135043761,+!p6@UTF1!1.32!19.81!UTF1;;chr1:209979467..209979494,-!p1@IRF6!1.29!20.56!IRF6;;chr19:22817119..22817145,+!p1@ZNF492!1.27!29.33!ZNF492;;chr17:41622834..41622883,-!p6@ETV4!1.27!21.06!ETV4;;chr12:6798731..6798751,-!p4@ZNF384!1.26!26.07!ZNF384;;chr1:53925516..53925575,+!p1@DMRTB1!1.26!17.30!DMRTB1;;chr8:70983443..70983460,-!p2@PRDM14!1.26!17.30!PRDM14;;chr12:8045012..8045024,+!p@chr12:8045012..8045024,+!1.23!15.79!NANOGP1;;chr10:70320041..70320065,+!p2@TET1!1.22!15.54!TET1;;chr19:22605097..22605121,-!p2@ZNF98!1.22!15.54!ZNF98;;chr20:50418128..50418147,-!p2@SALL4!1.22!15.54!SALL4;;chr20:42295745..42295765,+!p1@MYBL2!1.19!232.91!MYBL2;;chr19:9609272..9609297,-!p1@ZNF560!1.19!14.54!ZNF560;;chr20:50418972..50419029,-!p1@SALL4!1.18!14.29!SALL4;;chr17:41622765..41622821,-!p2@ETV4!1.17!21.06!ETV4;;chr1:40367668..40367684,-!p2@MYCL1!1.16!13.54!MYCL1;;chr1:53925063..53925076,+!p2@DMRTB1!1.16!13.54!DMRTB1;;chr4:87857491..87857519,+!p10@AFF1!1.14!17.55!AFF1;;chr7:20826504..20826526,-!p1@SP8!1.13!12.54!SP8;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!1.12!117.33!ZNF595;;chr19:47523058..47523114,+!p1@NPAS1!1.12!12.03!NPAS1;;chr4:26322267..26322334,+!p3@RBPJ!1.11!28.83!RBPJ;;chr15:85144307..85144329,+!p2@ZSCAN2!1.11!13.54!ZSCAN2;;chr1:44584485..44584512,+!p2@KLF17!1.11!11.78!KLF17;;chr2:25475094..25475112,-!p3@DNMT3A!1.11!11.78!DNMT3A;;chr8:37963407..37963454,+!p2@ASH2L!1.10!34.60!ASH2L;;chr3:57234000..57234014,-!p1@HESX1!1.10!11.53!HESX1;;chr10:135044076..135044090,+!p8@UTF1!1.10!11.53!UTF1;;chr20:42295713..42295738,+!p2@MYBL2!1.08!65.94!MYBL2;;chr6:21593973..21593988,+!p1@SOX4!1.07!386.84!SOX4;;chr19:19729477..19729542,-!p1@PBX4!1.07!23.07!PBX4;;chr4:87967906..87967931,+!p15@AFF1!1.07!14.79!AFF1;;chr19:22469236..22469266,+!p1@ZNF729!1.07!10.78!ZNF729;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.06!10.53!PEG3;;chr6:391743..391759,+!p1@IRF4!1.06!10.53!IRF4;;chr1:8934931..8934947,-!p4@ENO1!1.05!33.85!ENO1;;chr1:164528687..164528711,+!p6@PBX1!1.05!12.03!PBX1;;chr1:63788229..63788250,+!p1@FOXD3!1.05!10.28!FOXD3;;chr8:145701166..145701187,-!p2@FOXH1!1.05!10.28!FOXH1;;chr12:19592405..19592492,+!p2@AEBP2!1.04!87.00!AEBP2;;chr1:40367530..40367597,-!p1@MYCL1!1.04!18.30!MYCL1;;chr14:55493763..55493824,-!p1@WDHD1!1.03!73.96!WDHD1;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|ffid_belonging_in_development=UBERON:0009117,UBERON:0002532,UBERON:0006603,UBERON:0005564,UBERON:0010316
|fonse_cell_line=FF:0101120
|fonse_cell_line=FF:0101120
|fonse_cell_line_closure=FF:0101120
|fonse_cell_line_closure=FF:0101120
Line 37: Line 41:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC8.CNhs11726.10590-108D5.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC8.CNhs11726.10590-108D5.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC8.CNhs11726.10590-108D5.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC8.CNhs11726.10590-108D5.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aNEC8.CNhs11726.10590-108D5.hg38.nobarcode.ctss.bed.gz
|id=FF:10590-108D5
|id=FF:10590-108D5
|is_a=CL:0000586;;DOID:3095;;EFO:0002091;;FF:0000210;;FF:0100297;;UBERON:0000473;;UBERON:0000922
|is_a=CL:0000586;;DOID:3095;;EFO:0002091;;FF:0000210;;FF:0100297;;UBERON:0000473;;UBERON:0000922
|is_obsolete=
|is_obsolete=
|library_id=CNhs11726
|library_id_phase_based=2:CNhs11726
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10590
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10590
|name=testicular germ cell embryonal carcinoma cell line:NEC8
|name=testicular germ cell embryonal carcinoma cell line:NEC8
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 60:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11726,LSID819,release009,COMPLETED
|profile_hcage=CNhs11726,LSID819,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 60: Line 78:
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|sample_cell_line=NEC8
Line 81: Line 100:
|top_motifs=OCT4_SOX2{dimer}:3.34373330104;PITX1..3:2.71974093188;TOPORS:2.12276691599;ZNF384:1.72414536954;AIRE:1.66549826299;STAT5{A,B}:1.65868607104;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.53689595199;NFY{A,B,C}:1.45344252707;FOXM1:1.43051070941;E2F1..5:1.28392948162;MYB:1.19969720912;IKZF2:1.19962431619;NKX2-3_NKX2-5:1.17948168865;ZBTB16:1.15603420256;MYOD1:1.1296579711;FOXD3:1.12059680115;CDC5L:1.10189969198;bHLH_family:1.09722067104;CUX2:1.08905430543;SNAI1..3:1.06191743646;POU2F1..3:1.04993515461;ONECUT1,2:1.03586319445;T:1.02621416913;PBX1:0.928615613904;VSX1,2:0.884746978749;CDX1,2,4:0.870256209967;ZEB1:0.858364415601;NKX6-1,2:0.856546492406;EVI1:0.854658307467;HIF1A:0.851603208878;ALX1:0.84040328845;NRF1:0.833731497453;UFEwm:0.815284909136;STAT1,3:0.80241587672;SP1:0.790708151403;ZNF143:0.779247731491;HOX{A5,B5}:0.775887250703;NFIX:0.77364447298;TEF:0.721954115399;KLF4:0.688904551918;MTF1:0.677204638864;XCPE1{core}:0.674915118986;FOXQ1:0.661859596896;YY1:0.626230262582;GFI1:0.618043108586;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.609203720107;SOX{8,9,10}:0.599776815682;PAX8:0.497664920883;NR5A1,2:0.455116650684;PAX4:0.419812467792;FOXP1:0.398785188719;PAX1,9:0.357591598538;ESRRA:0.351644234883;ELK1,4_GABP{A,B1}:0.332942581052;POU1F1:0.301532664364;RORA:0.252185266244;FOXO1,3,4:0.227412230748;NR6A1:0.203059215776;FOXN1:0.190009022771;GZF1:0.187737284857;GATA4:0.147526406739;ZIC1..3:0.13296566337;PAX2:0.120035471926;HOX{A4,D4}:0.105071721306;NKX2-2,8:0.0835706714628;HNF4A_NR2F1,2:0.0760979166039;LEF1_TCF7_TCF7L1,2:0.0684418766736;TBP:0.0463936910375;NKX2-1,4:0.0413552825984;BPTF:0.0349345987341;ATF4:0.0347342335032;LHX3,4:0.0257808343703;ZNF148:0.00778279453425;LMO2:-0.0286354543454;RBPJ:-0.030165497496;EBF1:-0.0484414876319;GATA6:-0.0732409538182;TBX4,5:-0.0772631292856;ARID5B:-0.0869378926294;SOX17:-0.0918928861771;FOX{I1,J2}:-0.104732600002;FOX{F1,F2,J1}:-0.106735647764;HES1:-0.140286462088;SOX2:-0.157842555324;BREu{core}:-0.166129225469;TFDP1:-0.192655948045;ZFP161:-0.207804957073;NANOG:-0.209102537366;HSF1,2:-0.210187900334;PRRX1,2:-0.22198480395;IKZF1:-0.25146946973;HOX{A6,A7,B6,B7}:-0.257719495381;POU5F1:-0.264283379906;FOXA2:-0.268896094101;HNF1A:-0.304181114941;CRX:-0.31353959768;TLX2:-0.3165574065;ZBTB6:-0.378115440967;HAND1,2:-0.395435001327;RREB1:-0.399807009867;FOX{D1,D2}:-0.416451062799;REST:-0.41697105492;CREB1:-0.421161956034;EN1,2:-0.434209216779;PDX1:-0.454335052112;MYBL2:-0.459533863823;NFIL3:-0.478809620541;NFKB1_REL_RELA:-0.520478330828;RFX1:-0.53543108877;ATF5_CREB3:-0.540895939685;POU3F1..4:-0.545753222544;XBP1:-0.556927264506;AR:-0.567107095199;FOS_FOS{B,L1}_JUN{B,D}:-0.580764409333;POU6F1:-0.581016611201;TP53:-0.585287894619;PPARG:-0.585607830483;MTE{core}:-0.595808816062;PATZ1:-0.607162649629;ADNP_IRX_SIX_ZHX:-0.619131001714;BACH2:-0.620530126842;NFE2L2:-0.632883280321;ALX4:-0.651173784662;RFX2..5_RFXANK_RFXAP:-0.664928152864;AHR_ARNT_ARNT2:-0.665234005651;GFI1B:-0.682009070703;SPIB:-0.700852217493;NHLH1,2:-0.715364462583;SPI1:-0.720125940734;TEAD1:-0.720259610224;PRDM1:-0.727178001006;NKX3-1:-0.731167860935;NR3C1:-0.7332368391;MEF2{A,B,C,D}:-0.753265274969;FOXP3:-0.756727497218;MAZ:-0.761935845307;SOX5:-0.763235139549;GTF2I:-0.778648417839;MYFfamily:-0.781058756544;SREBF1,2:-0.791626273918;NFE2:-0.803088781546;PAX6:-0.804417357978;DMAP1_NCOR{1,2}_SMARC:-0.821070216806;MZF1:-0.836544780923;FOSL2:-0.83725720594;CEBPA,B_DDIT3:-0.860930909759;GCM1,2:-0.861740411183;NR1H4:-0.862902491465;HLF:-0.863446543095;SPZ1:-0.864100434171;ETS1,2:-0.864327361398;HBP1_HMGB_SSRP1_UBTF:-0.868537317526;PAX5:-0.876474150282;MED-1{core}:-0.883036881798;HMGA1,2:-0.887360677087;RUNX1..3:-0.888873792798;NKX3-2:-0.889972780999;FOXL1:-0.924128544031;ELF1,2,4:-0.987359601618;PAX3,7:-0.993272965012;RXR{A,B,G}:-1.02244975839;HMX1:-1.05385069626;NANOG{mouse}:-1.06009363047;HOXA9_MEIS1:-1.09316730767;IRF7:-1.11528582482;DBP:-1.12796060234;ZNF423:-1.13688058857;TFAP2B:-1.13827939321;ATF2:-1.15029059396;TFAP4:-1.19113051625;TGIF1:-1.21420370993;EGR1..3:-1.22198842648;NFE2L1:-1.23650471237;HIC1:-1.24700417336;JUN:-1.27974737876;TFCP2:-1.28426065345;TFAP2{A,C}:-1.35124078617;RXRA_VDR{dimer}:-1.36255621329;ZNF238:-1.37295128746;IRF1,2:-1.39802352708;TAL1_TCF{3,4,12}:-1.43226647016;STAT2,4,6:-1.48555639368;SRF:-1.4856624192;TLX1..3_NFIC{dimer}:-1.49709841797;GTF2A1,2:-1.62721346935;SMAD1..7,9:-1.63358182798;EP300:-1.67891929892;ATF6:-1.71860589245;NFATC1..3:-1.75190471818;ESR1:-1.89055572381;GLI1..3:-1.91183863978;MAFB:-2.17911623334
|top_motifs=OCT4_SOX2{dimer}:3.34373330104;PITX1..3:2.71974093188;TOPORS:2.12276691599;ZNF384:1.72414536954;AIRE:1.66549826299;STAT5{A,B}:1.65868607104;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.53689595199;NFY{A,B,C}:1.45344252707;FOXM1:1.43051070941;E2F1..5:1.28392948162;MYB:1.19969720912;IKZF2:1.19962431619;NKX2-3_NKX2-5:1.17948168865;ZBTB16:1.15603420256;MYOD1:1.1296579711;FOXD3:1.12059680115;CDC5L:1.10189969198;bHLH_family:1.09722067104;CUX2:1.08905430543;SNAI1..3:1.06191743646;POU2F1..3:1.04993515461;ONECUT1,2:1.03586319445;T:1.02621416913;PBX1:0.928615613904;VSX1,2:0.884746978749;CDX1,2,4:0.870256209967;ZEB1:0.858364415601;NKX6-1,2:0.856546492406;EVI1:0.854658307467;HIF1A:0.851603208878;ALX1:0.84040328845;NRF1:0.833731497453;UFEwm:0.815284909136;STAT1,3:0.80241587672;SP1:0.790708151403;ZNF143:0.779247731491;HOX{A5,B5}:0.775887250703;NFIX:0.77364447298;TEF:0.721954115399;KLF4:0.688904551918;MTF1:0.677204638864;XCPE1{core}:0.674915118986;FOXQ1:0.661859596896;YY1:0.626230262582;GFI1:0.618043108586;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.609203720107;SOX{8,9,10}:0.599776815682;PAX8:0.497664920883;NR5A1,2:0.455116650684;PAX4:0.419812467792;FOXP1:0.398785188719;PAX1,9:0.357591598538;ESRRA:0.351644234883;ELK1,4_GABP{A,B1}:0.332942581052;POU1F1:0.301532664364;RORA:0.252185266244;FOXO1,3,4:0.227412230748;NR6A1:0.203059215776;FOXN1:0.190009022771;GZF1:0.187737284857;GATA4:0.147526406739;ZIC1..3:0.13296566337;PAX2:0.120035471926;HOX{A4,D4}:0.105071721306;NKX2-2,8:0.0835706714628;HNF4A_NR2F1,2:0.0760979166039;LEF1_TCF7_TCF7L1,2:0.0684418766736;TBP:0.0463936910375;NKX2-1,4:0.0413552825984;BPTF:0.0349345987341;ATF4:0.0347342335032;LHX3,4:0.0257808343703;ZNF148:0.00778279453425;LMO2:-0.0286354543454;RBPJ:-0.030165497496;EBF1:-0.0484414876319;GATA6:-0.0732409538182;TBX4,5:-0.0772631292856;ARID5B:-0.0869378926294;SOX17:-0.0918928861771;FOX{I1,J2}:-0.104732600002;FOX{F1,F2,J1}:-0.106735647764;HES1:-0.140286462088;SOX2:-0.157842555324;BREu{core}:-0.166129225469;TFDP1:-0.192655948045;ZFP161:-0.207804957073;NANOG:-0.209102537366;HSF1,2:-0.210187900334;PRRX1,2:-0.22198480395;IKZF1:-0.25146946973;HOX{A6,A7,B6,B7}:-0.257719495381;POU5F1:-0.264283379906;FOXA2:-0.268896094101;HNF1A:-0.304181114941;CRX:-0.31353959768;TLX2:-0.3165574065;ZBTB6:-0.378115440967;HAND1,2:-0.395435001327;RREB1:-0.399807009867;FOX{D1,D2}:-0.416451062799;REST:-0.41697105492;CREB1:-0.421161956034;EN1,2:-0.434209216779;PDX1:-0.454335052112;MYBL2:-0.459533863823;NFIL3:-0.478809620541;NFKB1_REL_RELA:-0.520478330828;RFX1:-0.53543108877;ATF5_CREB3:-0.540895939685;POU3F1..4:-0.545753222544;XBP1:-0.556927264506;AR:-0.567107095199;FOS_FOS{B,L1}_JUN{B,D}:-0.580764409333;POU6F1:-0.581016611201;TP53:-0.585287894619;PPARG:-0.585607830483;MTE{core}:-0.595808816062;PATZ1:-0.607162649629;ADNP_IRX_SIX_ZHX:-0.619131001714;BACH2:-0.620530126842;NFE2L2:-0.632883280321;ALX4:-0.651173784662;RFX2..5_RFXANK_RFXAP:-0.664928152864;AHR_ARNT_ARNT2:-0.665234005651;GFI1B:-0.682009070703;SPIB:-0.700852217493;NHLH1,2:-0.715364462583;SPI1:-0.720125940734;TEAD1:-0.720259610224;PRDM1:-0.727178001006;NKX3-1:-0.731167860935;NR3C1:-0.7332368391;MEF2{A,B,C,D}:-0.753265274969;FOXP3:-0.756727497218;MAZ:-0.761935845307;SOX5:-0.763235139549;GTF2I:-0.778648417839;MYFfamily:-0.781058756544;SREBF1,2:-0.791626273918;NFE2:-0.803088781546;PAX6:-0.804417357978;DMAP1_NCOR{1,2}_SMARC:-0.821070216806;MZF1:-0.836544780923;FOSL2:-0.83725720594;CEBPA,B_DDIT3:-0.860930909759;GCM1,2:-0.861740411183;NR1H4:-0.862902491465;HLF:-0.863446543095;SPZ1:-0.864100434171;ETS1,2:-0.864327361398;HBP1_HMGB_SSRP1_UBTF:-0.868537317526;PAX5:-0.876474150282;MED-1{core}:-0.883036881798;HMGA1,2:-0.887360677087;RUNX1..3:-0.888873792798;NKX3-2:-0.889972780999;FOXL1:-0.924128544031;ELF1,2,4:-0.987359601618;PAX3,7:-0.993272965012;RXR{A,B,G}:-1.02244975839;HMX1:-1.05385069626;NANOG{mouse}:-1.06009363047;HOXA9_MEIS1:-1.09316730767;IRF7:-1.11528582482;DBP:-1.12796060234;ZNF423:-1.13688058857;TFAP2B:-1.13827939321;ATF2:-1.15029059396;TFAP4:-1.19113051625;TGIF1:-1.21420370993;EGR1..3:-1.22198842648;NFE2L1:-1.23650471237;HIC1:-1.24700417336;JUN:-1.27974737876;TFCP2:-1.28426065345;TFAP2{A,C}:-1.35124078617;RXRA_VDR{dimer}:-1.36255621329;ZNF238:-1.37295128746;IRF1,2:-1.39802352708;TAL1_TCF{3,4,12}:-1.43226647016;STAT2,4,6:-1.48555639368;SRF:-1.4856624192;TLX1..3_NFIC{dimer}:-1.49709841797;GTF2A1,2:-1.62721346935;SMAD1..7,9:-1.63358182798;EP300:-1.67891929892;ATF6:-1.71860589245;NFATC1..3:-1.75190471818;ESR1:-1.89055572381;GLI1..3:-1.91183863978;MAFB:-2.17911623334
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10590-108D5;search_select_hide=table117:FF:10590-108D5
}}
}}

Latest revision as of 14:30, 3 June 2020

Name:testicular germ cell embryonal carcinoma cell line:NEC8
Species:Human (Homo sapiens)
Library ID:CNhs11726
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuetestis
dev stageNA
sexmale
age24
cell typeunclassifiable
cell lineNEC8
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005256
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11726 CAGE DRX008025 DRR008897
Accession ID Hg19

Library idBAMCTSS
CNhs11726 DRZ000322 DRZ001707
Accession ID Hg38

Library idBAMCTSS
CNhs11726 DRZ011672 DRZ013057
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.322
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.561
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0.603
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea1.107
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0256
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.483
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0.177
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0969
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.00259
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.0476
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0972
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0.0972
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.455
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0574
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0175
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.5
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0.0972
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0.244
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11726

Jaspar motifP-value
MA0002.20.00363
MA0003.10.187
MA0004.10.187
MA0006.10.986
MA0007.10.327
MA0009.10.553
MA0014.10.0872
MA0017.10.909
MA0018.20.566
MA0019.10.355
MA0024.19.77619e-5
MA0025.10.372
MA0027.10.992
MA0028.10.014
MA0029.10.21
MA0030.10.325
MA0031.10.567
MA0035.20.309
MA0038.10.00742
MA0039.22.39251e-4
MA0040.10.277
MA0041.10.0476
MA0042.10.223
MA0043.10.536
MA0046.10.203
MA0047.20.0979
MA0048.10.137
MA0050.19.10808e-11
MA0051.11.78301e-6
MA0052.19.93916e-4
MA0055.10.0016
MA0057.10.773
MA0058.10.206
MA0059.10.00583
MA0060.12.03859e-13
MA0061.10.00665
MA0062.20.403
MA0065.20.00831
MA0066.10.974
MA0067.10.121
MA0068.10.577
MA0069.10.882
MA0070.10.608
MA0071.10.289
MA0072.10.52
MA0073.10.368
MA0074.10.479
MA0076.10.0701
MA0077.10.233
MA0078.10.966
MA0079.20.542
MA0080.27.33439e-9
MA0081.10.0365
MA0083.12.2102e-4
MA0084.10.707
MA0087.10.721
MA0088.10.0801
MA0090.10.149
MA0091.10.056
MA0092.10.0368
MA0093.10.186
MA0099.24.50689e-14
MA0100.10.268
MA0101.10.0131
MA0102.20.00512
MA0103.10.00282
MA0104.20.00478
MA0105.10.738
MA0106.10.928
MA0107.14.96225e-4
MA0108.20.134
MA0111.10.691
MA0112.20.834
MA0113.10.0737
MA0114.10.0743
MA0115.10.00873
MA0116.10.452
MA0117.10.831
MA0119.10.0583
MA0122.10.486
MA0124.10.557
MA0125.10.772
MA0131.10.47
MA0135.10.488
MA0136.17.80505e-8
MA0137.20.0354
MA0138.20.567
MA0139.10.218
MA0140.10.405
MA0141.10.105
MA0142.12.12511e-12
MA0143.10.00284
MA0144.10.00692
MA0145.10.919
MA0146.10.345
MA0147.14.95369e-4
MA0148.10.213
MA0149.10.542
MA0150.17.45375e-4
MA0152.10.882
MA0153.10.271
MA0154.10.462
MA0155.10.914
MA0156.11.21435e-4
MA0157.10.286
MA0159.10.387
MA0160.10.925
MA0162.10.906
MA0163.10.424
MA0164.10.977
MA0258.10.511
MA0259.10.00239



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11726

Novel motifP-value
10.859
100.669
1000.0865
1010.942
1020.331
1030.299
1040.408
1050.149
1060.0614
1070.397
1080.498
1090.776
110.918
1100.858
1110.949
1120.715
1130.0412
1140.878
1150.687
1160.657
1170.242
1180.544
1190.667
120.298
1200.581
1210.771
1220.418
1230.141
1240.31
1250.484
1260.385
1270.128
1280.479
1290.922
130.0108
1300.406
1310.554
1320.847
1330.0414
1340.0222
1350.0085
1360.0336
1370.919
1380.186
1390.513
140.407
1400.611
1410.856
1420.835
1430.375
1440.536
1450.541
1460.224
1470.661
1480.355
1490.0545
150.379
1500.931
1510.0522
1520.122
1530.907
1540.934
1550.361
1560.277
1570.839
1580.737
1590.773
160.737
1600.477
1610.476
1620.258
1630.458
1640.77
1650.961
1660.36
1670.248
1680.658
1690.227
170.848
180.595
190.401
20.218
200.439
210.458
220.18
230.0184
240.864
250.551
260.406
270.272
280.869
290.188
30.549
300.12
310.323
320.0187
330.251
340.347
350.768
360.249
370.821
380.762
390.541
40.222
400.0527
410.436
420.854
430.646
440.434
450.618
460.985
470.1
480.352
490.965
50.284
500.62
510.665
520.536
530.963
540.922
550.399
560.685
570.585
580.651
590.504
60.368
600.356
610.574
620.647
630.707
640.885
650.179
660.00228
670.639
680.275
690.216
70.402
700.201
710.969
720.858
730.283
740.804
750.534
760.259
770.197
780.118
790.471
80.591
800.027
810.421
820.444
830.123
840.965
850.301
860.877
870.093
880.588
890.025
90.0406
900.753
910.0933
920.0563
930.618
940.715
950.521
960.0628
970.638
980.794
990.89



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11726


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000473 (testis)
0000991 (gonad)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)

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