FF:10497-107C2: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005280 | |||
|accession_numbers=CAGE;DRX007876;DRR008748;DRZ000173;DRZ001558;DRZ011523;DRZ012908 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0002384,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0000066,CL:0002371,CL:0000499,CL:0000255,CL:0002076,CL:0002149,CL:0002255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr12:66218255..66218304,+!p3@HMGA2!2.18!389.35!HMGA2;;chr2:114036488..114036504,-!p1@PAX8!1.99!96.77!PAX8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.82!65.18!POU3F3;;chr17:46675558..46675577,-!p2@HOXB6!1.80!62.33!HOXB6;;chr17:48072574..48072597,-!p1@DLX3!1.76!56.35!DLX3;;chr1:201979743..201979762,+!p1@ELF3!1.74!54.36!ELF3;;chr6:10415484..10415508,-!p3@TFAP2A!1.72!51.23!TFAP2A;;chr11:34642612..34642646,+!p1@EHF!1.68!46.68!EHF;;chr7:27192185..27192209,-!p1@HOXA3!1.64!42.41!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!1.62!40.98!HOXA9;;chr12:66218212..66218244,+!p5@HMGA2!1.60!55.50!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!1.60!38.99!HOXA9;;chr17:46622205..46622218,-!p3@HOXB2!1.58!42.12!HOXB2;;chr17:36105042..36105060,-!p1@HNF1B!1.57!36.15!HNF1B;;chr12:66218378..66218401,+!p6@HMGA2!1.56!53.51!HMGA2;;chr12:26277956..26277980,-!p1@BHLHE41!1.55!118.97!BHLHE41;;chr12:26277817..26277863,-!p2@BHLHE41!1.55!45.82!BHLHE41;;chr6:126240442..126240459,+!p4@NCOA7!1.55!43.26!NCOA7;;chr7:27153454..27153469,-!p2@HOXA3!1.54!33.87!HOXA3;;chr12:66218183..66218209,+!p4@HMGA2!1.51!58.91!HMGA2;;chr17:46703687..46703740,-!p1@HOXB9!1.45!27.32!HOXB9;;chr12:66218836..66218888,+!p1@HMGA2!1.44!237.36!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!1.41!31.31!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.37!27.61!TFAP2A;;chr7:27196217..27196246,-!p2@HOXA7!1.37!22.48!HOXA7;;chr3:12330560..12330579,+!p1@PPARG!1.36!25.05!PPARG;;chr1:201979703..201979721,+!p2@ELF3!1.35!21.35!ELF3;;chr17:46667594..46667619,-!p1@HOXB3!1.34!21.06!HOXB3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!20.78!ZBED1;;chr6:126240380..126240430,+!p2@NCOA7!1.33!51.51!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.58!TFAP2A;;chr12:26278008..26278024,-!p4@BHLHE41!1.33!24.48!BHLHE41;;chr7:63505799..63505904,+!p1@ZNF727!1.33!20.49!ZNF727;;chr12:27485785..27485816,+!p1@ARNTL2!1.31!130.64!ARNTL2;;chr18:55102628..55102646,+!p2@ONECUT2!1.31!19.64!ONECUT2;;chr12:66218420..66218439,+!p12@HMGA2!1.31!19.35!HMGA2;;chr9:100615499..100615519,+!p1@FOXE1!1.31!19.35!FOXE1;;chr12:66218598..66218645,+!p2@HMGA2!1.28!82.54!HMGA2;;chr12:26278030..26278039,-!p7@BHLHE41!1.26!17.08!BHLHE41;;chr6:19837592..19837621,+!p1@ID4!1.24!99.33!ID4;;chr2:46524897..46524911,+!p2@EPAS1!1.24!44.97!EPAS1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.21!15.37!POU3F3;;chr14:29234581..29234601,+!p2@FOXG1!1.21!15.37!FOXG1;;chr7:113726357..113726443,+!p1@FOXP2!1.19!25.05!FOXP2;;chr7:28610099..28610113,+!p5@CREB5!1.18!14.23!CREB5;;chr18:55102598..55102623,+!p1@ONECUT2!1.18!14.23!ONECUT2;;chr13:100634031..100634045,+!p1@ZIC2!1.17!13.66!ZIC2;;chr7:26191809..26191890,+!p1@NFE2L3!1.16!66.03!NFE2L3;;chr8:77593474..77593612,+!p1@ZFHX4!1.16!57.21!ZFHX4;;chr12:27485762..27485776,+!p3@ARNTL2!1.16!36.15!ARNTL2;;chr17:46688334..46688385,-!p1@HOXB7!1.16!19.35!HOXB7;;chr19:53496768..53496799,-!p1@ZNF702P!1.15!20.49!ZNF702P;;chr7:57509877..57509895,+!p1@ZNF716!1.15!13.09!ZNF716;;chr12:26277929..26277955,-!p3@BHLHE41!1.13!17.93!BHLHE41;;chr6:126240463..126240489,+!p6@NCOA7!1.13!13.95!NCOA7;;chr3:141747459..141747475,-!p1@TFDP2!1.11!99.61!TFDP2;;chr12:66357214..66357233,+!p13@HMGA2!1.11!11.95!HMGA2;;chr17:46675619..46675642,-!p5@HOXB6!1.11!11.95!HOXB6;;chr17:41622765..41622821,-!p2@ETV4!1.10!17.65!ETV4;;chr17:46622229..46622257,-!p6@HOXB2!1.10!13.66!HOXB2;;chr3:169381420..169381535,-!p1@MECOM!1.09!13.38!MECOM;;chr17:46622440..46622477,-!p5@HOXB2!1.09!12.81!HOXB2;;chr8:102504651..102504683,+!p1@GRHL2!1.09!11.38!GRHL2;;chr5:137804405..137804444,+!p3@EGR1!1.08!13.38!EGR1;;chr8:55370487..55370503,+!p1@SOX17!1.08!11.10!SOX17;;chr12:66218003..66218018,+!p9@HMGA2!1.07!13.09!HMGA2;;chr6:28321909..28321965,-!p3@ZNF323!1.07!10.82!ZNF323;;chr19:53758058..53758088,-!p2@ZNF677!1.05!33.87!ZNF677;;chr13:100623375..100623425,-!p1@ZIC5!1.05!10.25!ZIC5;;chr2:200322654..200322707,-!p2@SATB2!1.04!14.52!SATB2;;chr4:149363475..149363492,-!p2@NR3C2!1.04!9.96!NR3C2;;chr12:66218152..66218174,+!p10@HMGA2!1.03!10.53!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.03!9.68!FOXG1;;chr3:69915385..69915438,+!p3@MITF!1.03!9.68!MITF;;chr4:149363494..149363543,-!p1@NR3C2!1.03!9.68!NR3C2;;chr17:46671108..46671147,-!p1@HOXB5!1.03!9.68!HOXB5;;chr16:51185172..51185197,-!p1@SALL1!1.02!9.39!SALL1;;chr17:41622731..41622764,-!p5@ETV4!1.02!9.39!ETV4;;chr6:10419768..10419819,-!p6@TFAP2A!1.02!9.39!TFAP2A;;chr12:27485823..27485868,+!p2@ARNTL2!1.01!37.85!ARNTL2;;chr17:41623009..41623053,-!p4@ETV4!1.01!15.08!ETV4;;chr9:4300050..4300118,-!p1@GLIS3!1.00!59.48!GLIS3;;chr7:28448965..28448994,+!p2@CREB5!1.00!32.16!CREB5;;chr3:69788576..69788648,+!p1@MITF!0.99!48.10!MITF;;chr2:60780753..60780800,-!p1@BCL11A!0.99!43.83!BCL11A;;chr19:49864746..49864780,-!p2@TEAD2!0.97!11.67!TEAD2;;chr12:26277994..26278001,-!p6@BHLHE41!0.97!8.25!BHLHE41;;chr8:116681409..116681431,-!p2@TRPS1!0.96!23.05!TRPS1;;chr12:54447599..54447630,+!p3@HOXC4!0.95!9.68!HOXC4;;chr14:29236269..29236285,+!p3@FOXG1!0.95!7.97!FOXG1;;chr3:114343826..114343869,-!p4@ZBTB20!0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ZNF607;;chr19:58920000..58920057,+!p1@ZNF584!0.27!5.69!ZNF584;;chr7:99647389..99647410,+!p1@ZSCAN21!0.27!5.41!ZSCAN21;;chr20:39946361..39946379,-!p2@ZHX3!0.27!4.27!ZHX3;;chr19:37958318..37958365,-!p2@ZNF569!0.27!3.70!ZNF569;;chr17:46655730..46655791,-!p1@HOXB4!0.27!3.42!HOXB4;;chr1:249153232..249153251,-!p2@ZNF692!0.27!3.13!ZNF692;;chr19:56879472..56879529,+!p2@ZNF542!0.27!2.85!ZNF542;;chr16:30621615..30621660,-!p2@ZNF689!0.27!2.28!ZNF689;;chr19:35168547..35168564,+!p3@ZNF302!0.27!1.42!ZNF302;;chr1:27023752..27023799,+!p4@ARID1A!0.27!1.42!ARID1A;;chr20:42136308..42136358,+!p2@L3MBTL1!0.27!1.42!L3MBTL;;chr1:23857325..23857416,-!p2@E2F2!0.27!1.14!E2F2;;chr4:149363544..149363583,-!p3@NR3C2!0.27!1.14!NR3C2;;chr6:20402070..20402082,+!p5@E2F3!0.27!1.14!E2F3;;chr7:106826626..106826630,+!p3@HBP1!0.27!1.14!HBP1;;chr13:73636252..73636307,+!p2@KLF5!0.27!1.14!KLF5;;chr10:104154415..104154434,+!p5@NFKB2!0.27!0.85!NFKB2;;chr10:124768217..124768228,-!p2@IKZF5!0.27!0.85!IKZF5;;chr10:28032548..28032559,-!p7@MKX!0.27!0.85!MKX;;chr11:16419067..16419077,-!p23@SOX6!0.27!0.85!SOX6;;chr11:31832658..31832681,-!p1@PAX6!0.27!0.85!PAX6;;chr11:65480222..65480241,+!p4@KAT5!0.27!0.85!KAT5;;chr12:51157232..51157277,+!p6@ATF1!0.27!0.85!ATF1;;chr12:54379477..54379498,+!p5@HOXC5!0.27!0.85!HOXC5;;chr12:54447219..54447237,+!p6@HOXC4!0.27!0.85!HOXC4;;chr12:80084120..80084136,-!p15@PAWR!0.27!0.85!PAWR;;chr13:100634111..100634118,+!p8@ZIC2!0.27!0.85!ZIC2;;chr14:29234870..29234930,+!p7@FOXG1!0.27!0.85!FOXG1;;chr14:36989427..36989442,-!p1@NKX2-1!0.27!0.85!NKX2-1;;chr14:69260437..69260442,-!p10@ZFP36L1!0.27!0.85!ZFP36L1;;chr14:69263043..69263069,-!p8@ZFP36L1!0.27!0.85!ZFP36L1;;chr2:10091783..10091811,+!p2@GRHL1!0.27!0.85!GRHL1;;chr2:176969179..176969226,+!p2@HOXD11!0.27!0.85!HOXD11;;chr2:176987441..176987454,+!p1@HOXD9!0.27!0.85!HOXD9;;chr2:180427235..180427244,-!p10@ZNF385B!0.27!0.85!ZNF385B;;chr2:191906489..191906517,-!p6@STAT4!0.27!0.85!STAT4;;chr2:237077022..237077038,-!p1@GBX2!0.27!0.85!GBX2;;chr2:60778062..60778075,-!p6@BCL11A!0.27!0.85!BCL11A;;chr3:141868208..141868219,-!p11@TFDP2!0.27!0.85!TFDP2;;chr3:170076246..170076261,+!p8@SKIL!0.27!0.85!SKIL;;chr3:69812731..69812742,+!p19@MITF!0.27!0.85!MITF;;chr3:69812764..69812775,+!p18@MITF!0.27!0.85!MITF;;chr3:69812852..69812864,+!p17@MITF!0.27!0.85!MITF;;chr16:30102849..30102865,-!p2@TBX6!0.27!0.85!TBX6;;chr17:46621146..46621180,-!p10@HOXB2!0.27!0.85!HOXB2;;chr17:46682321..46682362,-!p1@HOXB6!0.27!0.85!HOXB6;;chr17:46691990..46692004,-!p11@HOXB8!0.27!0.85!HOXB8;;chr17:46692624..46692659,-!p3@HOXB8!0.27!0.85!HOXB8;;chr17:46703212..46703238,-!p2@HOXB9!0.27!0.85!HOXB9;;chr17:46703478..46703488,-!p9@HOXB9!0.27!0.85!HOXB9;;chr17:48045917..48045977,+!p1@DLX4!0.27!0.85!DLX4;;chr17:79881409..79881423,-!p8@MAFG!0.27!0.85!MAFG;;chr19:12405588..12405595,-!p4@ZNF44!0.27!0.85!ZNF44;;chr19:12595565..12595576,-!p3@ZNF709!0.27!0.85!ZNF709;;chr19:20188831..20188844,+!p2@ZNF90!0.27!0.85!ZNF90;;chr19:37096126..37096137,-!p4@ZNF529!0.27!0.85!ZNF529;;chr19:37958064..37958076,-!p4@ZNF569!0.27!0.85!ZNF569;;chr19:38183103..38183114,-!p5@ZNF781!0.27!0.85!ZNF781;;chr19:44488402..44488405,+!p3@ZNF155!0.27!0.85!ZNF155;;chr19:44716768..44716775,+!p2@ZNF227!0.27!0.85!ZNF227;;chr19:46806868..46806883,+!p3@HIF3A!0.27!0.85!HIF3A;;chr19:53758167..53758190,-!p3@ZNF677!0.27!0.85!ZNF677;;chr19:57352109..57352153,-!p2@ZIM2!0.27!0.85!ZIM2;;chr1:37945588..37945604,+!p3@ZC3H12A!0.27!0.85!ZC3H12A;;chr1:40105299..40105326,-!p1@HEYL!0.27!0.85!HEYL;;chr20:18038521..18038571,-!p1@OVOL2!0.27!0.85!OVOL2;;chr20:62339469..62339470,+!p10@ZGPAT!0.27!0.85!ZGPAT;;chr5:170736243..170736279,+!p1@TLX3!0.27!0.85!TLX3;;chr5:56248032..56248039,-!p3@MIER3!0.27!0.85!MIER3;;chr6:10412477..10412490,-!p10@TFAP2A!0.27!0.85!TFAP2A;;chr6:10419884..10419898,-!p11@TFAP2A!0.27!0.85!TFAP2A;;chr6:10420285..10420304,-!p18@TFAP2A!0.27!0.85!TFAP2A;;chr6:126102339..126102351,+!p12@NCOA7!0.27!0.85!NCOA7;;chr6:1610178..1610190,+!p5@FOXC1!0.27!0.85!FOXC1;;chr6:1612219..1612239,+!p8@FOXC1!0.27!0.85!FOXC1;;chr6:28322004..28322023,-!p6@ZNF323!0.27!0.85!ZNF323;;chr7:14029004..14029017,-!p8@ETV1!0.27!0.85!ETV1;;chr7:148982396..148982408,+!p4@ZNF783!0.27!0.85!ZNF783;;chr7:150864780..150864785,-!p1@GBX1!0.27!0.85!GBX1;;chr7:27169801..27169844,-!p2@HOXA4!0.27!0.85!HOXA4;; | |expression_enrichment_score=chr12:66218255..66218304,+!p3@HMGA2!2.18!389.35!HMGA2;;chr2:114036488..114036504,-!p1@PAX8!1.99!96.77!PAX8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.82!65.18!POU3F3;;chr17:46675558..46675577,-!p2@HOXB6!1.80!62.33!HOXB6;;chr17:48072574..48072597,-!p1@DLX3!1.76!56.35!DLX3;;chr1:201979743..201979762,+!p1@ELF3!1.74!54.36!ELF3;;chr6:10415484..10415508,-!p3@TFAP2A!1.72!51.23!TFAP2A;;chr11:34642612..34642646,+!p1@EHF!1.68!46.68!EHF;;chr7:27192185..27192209,-!p1@HOXA3!1.64!42.41!HOXA3;;chr7:27205136..27205164,-!p1@HOXA9!1.62!40.98!HOXA9;;chr12:66218212..66218244,+!p5@HMGA2!1.60!55.50!HMGA2;;chr7:27205106..27205134,-!p2@HOXA9!1.60!38.99!HOXA9;;chr17:46622205..46622218,-!p3@HOXB2!1.58!42.12!HOXB2;;chr17:36105042..36105060,-!p1@HNF1B!1.57!36.15!HNF1B;;chr12:66218378..66218401,+!p6@HMGA2!1.56!53.51!HMGA2;;chr12:26277956..26277980,-!p1@BHLHE41!1.55!118.97!BHLHE41;;chr12:26277817..26277863,-!p2@BHLHE41!1.55!45.82!BHLHE41;;chr6:126240442..126240459,+!p4@NCOA7!1.55!43.26!NCOA7;;chr7:27153454..27153469,-!p2@HOXA3!1.54!33.87!HOXA3;;chr12:66218183..66218209,+!p4@HMGA2!1.51!58.91!HMGA2;;chr17:46703687..46703740,-!p1@HOXB9!1.45!27.32!HOXB9;;chr12:66218836..66218888,+!p1@HMGA2!1.44!237.36!HMGA2;;chr12:66218443..66218461,+!p8@HMGA2!1.41!31.31!HMGA2;;chr6:10415276..10415341,-!p2@TFAP2A!1.37!27.61!TFAP2A;;chr7:27196217..27196246,-!p2@HOXA7!1.37!22.48!HOXA7;;chr3:12330560..12330579,+!p1@PPARG!1.36!25.05!PPARG;;chr1:201979703..201979721,+!p2@ELF3!1.35!21.35!ELF3;;chr17:46667594..46667619,-!p1@HOXB3!1.34!21.06!HOXB3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.34!20.78!ZBED1;;chr6:126240380..126240430,+!p2@NCOA7!1.33!51.51!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.33!33.58!TFAP2A;;chr12:26278008..26278024,-!p4@BHLHE41!1.33!24.48!BHLHE41;;chr7:63505799..63505904,+!p1@ZNF727!1.33!20.49!ZNF727;;chr12:27485785..27485816,+!p1@ARNTL2!1.31!130.64!ARNTL2;;chr18:55102628..55102646,+!p2@ONECUT2!1.31!19.64!ONECUT2;;chr12:66218420..66218439,+!p12@HMGA2!1.31!19.35!HMGA2;;chr9:100615499..100615519,+!p1@FOXE1!1.31!19.35!FOXE1;;chr12:66218598..66218645,+!p2@HMGA2!1.28!82.54!HMGA2;;chr12:26278030..26278039,-!p7@BHLHE41!1.26!17.08!BHLHE41;;chr6:19837592..19837621,+!p1@ID4!1.24!99.33!ID4;;chr2:46524897..46524911,+!p2@EPAS1!1.24!44.97!EPAS1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.21!15.37!POU3F3;;chr14:29234581..29234601,+!p2@FOXG1!1.21!15.37!FOXG1;;chr7:113726357..113726443,+!p1@FOXP2!1.19!25.05!FOXP2;;chr7:28610099..28610113,+!p5@CREB5!1.18!14.23!CREB5;;chr18:55102598..55102623,+!p1@ONECUT2!1.18!14.23!ONECUT2;;chr13:100634031..100634045,+!p1@ZIC2!1.17!13.66!ZIC2;;chr7:26191809..26191890,+!p1@NFE2L3!1.16!66.03!NFE2L3;;chr8:77593474..77593612,+!p1@ZFHX4!1.16!57.21!ZFHX4;;chr12:27485762..27485776,+!p3@ARNTL2!1.16!36.15!ARNTL2;;chr17:46688334..46688385,-!p1@HOXB7!1.16!19.35!HOXB7;;chr19:53496768..53496799,-!p1@ZNF702P!1.15!20.49!ZNF702P;;chr7:57509877..57509895,+!p1@ZNF716!1.15!13.09!ZNF716;;chr12:26277929..26277955,-!p3@BHLHE41!1.13!17.93!BHLHE41;;chr6:126240463..126240489,+!p6@NCOA7!1.13!13.95!NCOA7;;chr3:141747459..141747475,-!p1@TFDP2!1.11!99.61!TFDP2;;chr12:66357214..66357233,+!p13@HMGA2!1.11!11.95!HMGA2;;chr17:46675619..46675642,-!p5@HOXB6!1.11!11.95!HOXB6;;chr17:41622765..41622821,-!p2@ETV4!1.10!17.65!ETV4;;chr17:46622229..46622257,-!p6@HOXB2!1.10!13.66!HOXB2;;chr3:169381420..169381535,-!p1@MECOM!1.09!13.38!MECOM;;chr17:46622440..46622477,-!p5@HOXB2!1.09!12.81!HOXB2;;chr8:102504651..102504683,+!p1@GRHL2!1.09!11.38!GRHL2;;chr5:137804405..137804444,+!p3@EGR1!1.08!13.38!EGR1;;chr8:55370487..55370503,+!p1@SOX17!1.08!11.10!SOX17;;chr12:66218003..66218018,+!p9@HMGA2!1.07!13.09!HMGA2;;chr6:28321909..28321965,-!p3@ZNF323!1.07!10.82!ZNF323;;chr19:53758058..53758088,-!p2@ZNF677!1.05!33.87!ZNF677;;chr13:100623375..100623425,-!p1@ZIC5!1.05!10.25!ZIC5;;chr2:200322654..200322707,-!p2@SATB2!1.04!14.52!SATB2;;chr4:149363475..149363492,-!p2@NR3C2!1.04!9.96!NR3C2;;chr12:66218152..66218174,+!p10@HMGA2!1.03!10.53!HMGA2;;chr14:29235961..29236008,+!p1@FOXG1!1.03!9.68!FOXG1;;chr3:69915385..69915438,+!p3@MITF!1.03!9.68!MITF;;chr4:149363494..149363543,-!p1@NR3C2!1.03!9.68!NR3C2;;chr17:46671108..46671147,-!p1@HOXB5!1.03!9.68!HOXB5;;chr16:51185172..51185197,-!p1@SALL1!1.02!9.39!SALL1;;chr17:41622731..41622764,-!p5@ETV4!1.02!9.39!ETV4;;chr6:10419768..10419819,-!p6@TFAP2A!1.02!9.39!TFAP2A;;chr12:27485823..27485868,+!p2@ARNTL2!1.01!37.85!ARNTL2;;chr17:41623009..41623053,-!p4@ETV4!1.01!15.08!ETV4;;chr9:4300050..4300118,-!p1@GLIS3!1.00!59.48!GLIS3;;chr7:28448965..28448994,+!p2@CREB5!1.00!32.16!CREB5;;chr3:69788576..69788648,+!p1@MITF!0.99!48.10!MITF;;chr2:60780753..60780800,-!p1@BCL11A!0.99!43.83!BCL11A;;chr19:49864746..49864780,-!p2@TEAD2!0.97!11.67!TEAD2;;chr12:26277994..26278001,-!p6@BHLHE41!0.97!8.25!BHLHE41;;chr8:116681409..116681431,-!p2@TRPS1!0.96!23.05!TRPS1;;chr12:54447599..54447630,+!p3@HOXC4!0.95!9.68!HOXC4;;chr14:29236269..29236285,+!p3@FOXG1!0.95!7.97!FOXG1;;chr3:114343826..114343869,-!p4@ZBTB20!0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ZNF607;;chr19:58920000..58920057,+!p1@ZNF584!0.27!5.69!ZNF584;;chr7:99647389..99647410,+!p1@ZSCAN21!0.27!5.41!ZSCAN21;;chr20:39946361..39946379,-!p2@ZHX3!0.27!4.27!ZHX3;;chr19:37958318..37958365,-!p2@ZNF569!0.27!3.70!ZNF569;;chr17:46655730..46655791,-!p1@HOXB4!0.27!3.42!HOXB4;;chr1:249153232..249153251,-!p2@ZNF692!0.27!3.13!ZNF692;;chr19:56879472..56879529,+!p2@ZNF542!0.27!2.85!ZNF542;;chr16:30621615..30621660,-!p2@ZNF689!0.27!2.28!ZNF689;;chr19:35168547..35168564,+!p3@ZNF302!0.27!1.42!ZNF302;;chr1:27023752..27023799,+!p4@ARID1A!0.27!1.42!ARID1A;;chr20:42136308..42136358,+!p2@L3MBTL1!0.27!1.42!L3MBTL;;chr1:23857325..23857416,-!p2@E2F2!0.27!1.14!E2F2;;chr4:149363544..149363583,-!p3@NR3C2!0.27!1.14!NR3C2;;chr6:20402070..20402082,+!p5@E2F3!0.27!1.14!E2F3;;chr7:106826626..106826630,+!p3@HBP1!0.27!1.14!HBP1;;chr13:73636252..73636307,+!p2@KLF5!0.27!1.14!KLF5;;chr10:104154415..104154434,+!p5@NFKB2!0.27!0.85!NFKB2;;chr10:124768217..124768228,-!p2@IKZF5!0.27!0.85!IKZF5;;chr10:28032548..28032559,-!p7@MKX!0.27!0.85!MKX;;chr11:16419067..16419077,-!p23@SOX6!0.27!0.85!SOX6;;chr11:31832658..31832681,-!p1@PAX6!0.27!0.85!PAX6;;chr11:65480222..65480241,+!p4@KAT5!0.27!0.85!KAT5;;chr12:51157232..51157277,+!p6@ATF1!0.27!0.85!ATF1;;chr12:54379477..54379498,+!p5@HOXC5!0.27!0.85!HOXC5;;chr12:54447219..54447237,+!p6@HOXC4!0.27!0.85!HOXC4;;chr12:80084120..80084136,-!p15@PAWR!0.27!0.85!PAWR;;chr13:100634111..100634118,+!p8@ZIC2!0.27!0.85!ZIC2;;chr14:29234870..29234930,+!p7@FOXG1!0.27!0.85!FOXG1;;chr14:36989427..36989442,-!p1@NKX2-1!0.27!0.85!NKX2-1;;chr14:69260437..69260442,-!p10@ZFP36L1!0.27!0.85!ZFP36L1;;chr14:69263043..69263069,-!p8@ZFP36L1!0.27!0.85!ZFP36L1;;chr2:10091783..10091811,+!p2@GRHL1!0.27!0.85!GRHL1;;chr2:176969179..176969226,+!p2@HOXD11!0.27!0.85!HOXD11;;chr2:176987441..176987454,+!p1@HOXD9!0.27!0.85!HOXD9;;chr2:180427235..180427244,-!p10@ZNF385B!0.27!0.85!ZNF385B;;chr2:191906489..191906517,-!p6@STAT4!0.27!0.85!STAT4;;chr2:237077022..237077038,-!p1@GBX2!0.27!0.85!GBX2;;chr2:60778062..60778075,-!p6@BCL11A!0.27!0.85!BCL11A;;chr3:141868208..141868219,-!p11@TFDP2!0.27!0.85!TFDP2;;chr3:170076246..170076261,+!p8@SKIL!0.27!0.85!SKIL;;chr3:69812731..69812742,+!p19@MITF!0.27!0.85!MITF;;chr3:69812764..69812775,+!p18@MITF!0.27!0.85!MITF;;chr3:69812852..69812864,+!p17@MITF!0.27!0.85!MITF;;chr16:30102849..30102865,-!p2@TBX6!0.27!0.85!TBX6;;chr17:46621146..46621180,-!p10@HOXB2!0.27!0.85!HOXB2;;chr17:46682321..46682362,-!p1@HOXB6!0.27!0.85!HOXB6;;chr17:46691990..46692004,-!p11@HOXB8!0.27!0.85!HOXB8;;chr17:46692624..46692659,-!p3@HOXB8!0.27!0.85!HOXB8;;chr17:46703212..46703238,-!p2@HOXB9!0.27!0.85!HOXB9;;chr17:46703478..46703488,-!p9@HOXB9!0.27!0.85!HOXB9;;chr17:48045917..48045977,+!p1@DLX4!0.27!0.85!DLX4;;chr17:79881409..79881423,-!p8@MAFG!0.27!0.85!MAFG;;chr19:12405588..12405595,-!p4@ZNF44!0.27!0.85!ZNF44;;chr19:12595565..12595576,-!p3@ZNF709!0.27!0.85!ZNF709;;chr19:20188831..20188844,+!p2@ZNF90!0.27!0.85!ZNF90;;chr19:37096126..37096137,-!p4@ZNF529!0.27!0.85!ZNF529;;chr19:37958064..37958076,-!p4@ZNF569!0.27!0.85!ZNF569;;chr19:38183103..38183114,-!p5@ZNF781!0.27!0.85!ZNF781;;chr19:44488402..44488405,+!p3@ZNF155!0.27!0.85!ZNF155;;chr19:44716768..44716775,+!p2@ZNF227!0.27!0.85!ZNF227;;chr19:46806868..46806883,+!p3@HIF3A!0.27!0.85!HIF3A;;chr19:53758167..53758190,-!p3@ZNF677!0.27!0.85!ZNF677;;chr19:57352109..57352153,-!p2@ZIM2!0.27!0.85!ZIM2;;chr1:37945588..37945604,+!p3@ZC3H12A!0.27!0.85!ZC3H12A;;chr1:40105299..40105326,-!p1@HEYL!0.27!0.85!HEYL;;chr20:18038521..18038571,-!p1@OVOL2!0.27!0.85!OVOL2;;chr20:62339469..62339470,+!p10@ZGPAT!0.27!0.85!ZGPAT;;chr5:170736243..170736279,+!p1@TLX3!0.27!0.85!TLX3;;chr5:56248032..56248039,-!p3@MIER3!0.27!0.85!MIER3;;chr6:10412477..10412490,-!p10@TFAP2A!0.27!0.85!TFAP2A;;chr6:10419884..10419898,-!p11@TFAP2A!0.27!0.85!TFAP2A;;chr6:10420285..10420304,-!p18@TFAP2A!0.27!0.85!TFAP2A;;chr6:126102339..126102351,+!p12@NCOA7!0.27!0.85!NCOA7;;chr6:1610178..1610190,+!p5@FOXC1!0.27!0.85!FOXC1;;chr6:1612219..1612239,+!p8@FOXC1!0.27!0.85!FOXC1;;chr6:28322004..28322023,-!p6@ZNF323!0.27!0.85!ZNF323;;chr7:14029004..14029017,-!p8@ETV1!0.27!0.85!ETV1;;chr7:148982396..148982408,+!p4@ZNF783!0.27!0.85!ZNF783;;chr7:150864780..150864785,-!p1@GBX1!0.27!0.85!GBX1;;chr7:27169801..27169844,-!p2@HOXA4!0.27!0.85!HOXA4;; | ||
|ffid_belonging_in_development=CL:0000134,CL:0000223,UBERON:0002532,UBERON:0006603,UBERON:0010316 | |||
|fonse_cell_line=FF:0101120,FF:0101555 | |fonse_cell_line=FF:0101120,FF:0101555 | ||
|fonse_cell_line_closure=FF:0101120,FF:0101555 | |fonse_cell_line_closure=FF:0101120,FF:0101555 | ||
Line 37: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrial%2520carcinoma%2520cell%2520line%253aOMC-2.CNhs11266.10497-107C2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrial%2520carcinoma%2520cell%2520line%253aOMC-2.CNhs11266.10497-107C2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/endometrial%2520carcinoma%2520cell%2520line%253aOMC-2.CNhs11266.10497-107C2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/endometrial%2520carcinoma%2520cell%2520line%253aOMC-2.CNhs11266.10497-107C2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/endometrial%2520carcinoma%2520cell%2520line%253aOMC-2.CNhs11266.10497-107C2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10497-107C2 | |id=FF:10497-107C2 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100167;;FF:0101555 | |is_a=EFO:0002091;;FF:0000210;;FF:0100167;;FF:0101555 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11266 | |||
|library_id_phase_based=2:CNhs11266 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10497 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10497 | |||
|name=endometrial carcinoma cell line:OMC-2 | |name=endometrial carcinoma cell line:OMC-2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11266,LSID758,release008,COMPLETED | |profile_hcage=CNhs11266,LSID758,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.097841791688246,0,0,0,0,0.169778670527506,0,-0.0215665243725967,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0412679563442687,0,0,0,0,0,0,0,0,0.0301705513696207,0,0,0,0,0,0,0,0.0117787837223049,0,0,0.170725959676434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0628879301228039,0,0,0.10877114496491,0,0,0,-0.119977956937069,0,0,0,-0.0661980438705507,-0.211197402695869,0.054385572482455,0,0.054385572482455,0,0.0107357937272036,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0.054385572482455,0,0,0,0,0,0,0.351493109197394,0,0,0,-0.0212163749429062,-0.0584834617220785,0,0,0,0,0,0 | |||
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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 60: | Line 78: | ||
|rna_weight_ug=22.25675 | |rna_weight_ug=22.25675 | ||
|sample_age=59 | |sample_age=59 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2830 | |sample_cell_catalog=RCB2830 | ||
|sample_cell_line=OMC-2 | |sample_cell_line=OMC-2 | ||
Line 81: | Line 100: | ||
|top_motifs=ADNP_IRX_SIX_ZHX:2.16663155594;SNAI1..3:1.80391977986;HNF1A:1.74224735689;ONECUT1,2:1.67592685731;ZEB1:1.57791447346;ELK1,4_GABP{A,B1}:1.37408278796;PITX1..3:1.33115032621;FOXQ1:1.2628866333;NR6A1:1.24608690638;MYOD1:1.19700713937;DBP:1.17867016532;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.12561946858;ESR1:1.10112638195;IKZF1:1.08286799044;NKX6-1,2:1.07540680339;ZBTB16:1.0419450813;HOX{A6,A7,B6,B7}:1.039259073;NKX2-3_NKX2-5:1.01675170907;STAT1,3:0.997768640154;RBPJ:0.932350481064;bHLH_family:0.928679163368;TBX4,5:0.919192015941;EN1,2:0.891587424118;HOXA9_MEIS1:0.856441437046;CRX:0.840043535287;HOX{A4,D4}:0.83511000054;PPARG:0.83067732979;RORA:0.810368888444;GFI1:0.77093501947;VSX1,2:0.735692064884;STAT5{A,B}:0.714706814226;ESRRA:0.703384202925;FOXN1:0.701062064863;HAND1,2:0.695322848168;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.67095087852;MYB:0.670584339241;PAX4:0.664627020424;FOXP1:0.604038300662;SP1:0.602586131569;FOXA2:0.602548188566;E2F1..5:0.5639685066;NKX3-2:0.544671147788;LHX3,4:0.542469145856;T:0.542348760609;ZNF143:0.51152941136;ZNF148:0.505764802594;PATZ1:0.502246933065;RXRA_VDR{dimer}:0.475487233774;NFY{A,B,C}:0.474075435616;TEF:0.464024371201;FOX{I1,J2}:0.444349562154;NFE2:0.442979023494;POU1F1:0.435102366311;TOPORS:0.420983553791;HBP1_HMGB_SSRP1_UBTF:0.388217802039;CUX2:0.372729463013;MZF1:0.34467995943;LMO2:0.343917323429;TLX1..3_NFIC{dimer}:0.342737174762;OCT4_SOX2{dimer}:0.342421634346;CDC5L:0.342294283184;NFIX:0.336770121361;RXR{A,B,G}:0.335166064196;AIRE:0.335072378656;NFE2L2:0.323273169101;NKX2-1,4:0.318991522586;TEAD1:0.317191797618;NRF1:0.303772967282;IRF7:0.302680727756;RFX1:0.296374144896;ALX4:0.294946207605;PDX1:0.290039049566;CDX1,2,4:0.281642581116;IKZF2:0.247017618686;FOXD3:0.246453979333;LEF1_TCF7_TCF7L1,2:0.240321094158;FOXL1:0.228706433046;EVI1:0.222306234499;ZNF423:0.217338744395;PRRX1,2:0.195875552143;CEBPA,B_DDIT3:0.168257896782;HOX{A5,B5}:0.157103092692;SREBF1,2:0.150909572894;PBX1:0.150540410345;NFKB1_REL_RELA:0.1489298411;POU5F1:0.144937728836;HNF4A_NR2F1,2:0.132134879808;YY1:0.115573812338;RREB1:0.105921729498;NR5A1,2:0.0695607783923;GLI1..3:0.0679216101424;BPTF:0.0485650683974;XBP1:0.0399158548928;HLF:0.0369859058004;SOX17:0.0226531378458;HMGA1,2:0.0177402790242;ARID5B:0.0174379470385;ATF2:0.0116294935949;FOSL2:0.00553410148699;SOX{8,9,10}:0.00221583843897;POU2F1..3:0.000340374063752;NR1H4:-0.0180423577584;FOX{F1,F2,J1}:-0.0244017960216;FOX{D1,D2}:-0.0366451713511;GFI1B:-0.0443810091955;ALX1:-0.079064941019;TP53:-0.104951378987;ELF1,2,4:-0.109166874629;IRF1,2:-0.11559351041;XCPE1{core}:-0.131503789705;RFX2..5_RFXANK_RFXAP:-0.133613460604;STAT2,4,6:-0.134687196666;BACH2:-0.147395786753;FOS_FOS{B,L1}_JUN{B,D}:-0.156348492351;AR:-0.172936850807;KLF4:-0.183430138007;TFCP2:-0.190202976454;GATA6:-0.206078221181;MAZ:-0.210256201167;FOXM1:-0.227765661748;ATF6:-0.255861370256;PAX3,7:-0.258800464793;MED-1{core}:-0.270289685516;TLX2:-0.279271777123;ZFP161:-0.28533045508;ZBTB6:-0.293414989928;REST:-0.305530945987;NR3C1:-0.317747873424;MEF2{A,B,C,D}:-0.324731335714;NFIL3:-0.332882510691;SOX2:-0.360313160394;PAX6:-0.366875171512;GTF2I:-0.369903116883;GTF2A1,2:-0.377318093964;EGR1..3:-0.379721674159;PAX5:-0.386491943037;MYFfamily:-0.386772245878;PAX8:-0.388677068851;SOX5:-0.405187058305;FOXO1,3,4:-0.410050876569;MYBL2:-0.410664658208;NANOG:-0.415681002635;AHR_ARNT_ARNT2:-0.453941495131;ZIC1..3:-0.484142659573;POU3F1..4:-0.496932659726;BREu{core}:-0.503306699888;ATF4:-0.507132782084;ATF5_CREB3:-0.520254062867;ETS1,2:-0.532440340361;DMAP1_NCOR{1,2}_SMARC:-0.536634492265;HIC1:-0.543008844815;EBF1:-0.562523929671;SRF:-0.56448682284;TFAP2{A,C}:-0.567289495273;MTE{core}:-0.573430946837;TFDP1:-0.57527100384;PAX2:-0.591130493316;FOXP3:-0.596283304626;SPI1:-0.603887827371;SPIB:-0.623656534856;TFAP2B:-0.625207693179;TAL1_TCF{3,4,12}:-0.64843460203;POU6F1:-0.652577549168;UFEwm:-0.664760378522;SPZ1:-0.669217625123;MTF1:-0.673588762376;NKX3-1:-0.67394151736;GCM1,2:-0.719911880538;NFE2L1:-0.737035883015;JUN:-0.740008532859;EP300:-0.74355620674;PRDM1:-0.743730974297;NHLH1,2:-0.749660302503;HSF1,2:-0.76583770572;RUNX1..3:-0.870479589471;CREB1:-0.874687613965;ZNF384:-0.892598126465;PAX1,9:-0.894578436575;NANOG{mouse}:-0.914160436794;TBP:-0.97127518261;TGIF1:-1.04784730796;ZNF238:-1.10090948979;HIF1A:-1.11164588745;GZF1:-1.12217569769;HES1:-1.14492249943;NKX2-2,8:-1.1730579574;SMAD1..7,9:-1.27308306471;NFATC1..3:-1.33040038049;MAFB:-1.43619825898;TFAP4:-1.95055574357;GATA4:-2.05966442003;HMX1:-2.10460156596 | |top_motifs=ADNP_IRX_SIX_ZHX:2.16663155594;SNAI1..3:1.80391977986;HNF1A:1.74224735689;ONECUT1,2:1.67592685731;ZEB1:1.57791447346;ELK1,4_GABP{A,B1}:1.37408278796;PITX1..3:1.33115032621;FOXQ1:1.2628866333;NR6A1:1.24608690638;MYOD1:1.19700713937;DBP:1.17867016532;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.12561946858;ESR1:1.10112638195;IKZF1:1.08286799044;NKX6-1,2:1.07540680339;ZBTB16:1.0419450813;HOX{A6,A7,B6,B7}:1.039259073;NKX2-3_NKX2-5:1.01675170907;STAT1,3:0.997768640154;RBPJ:0.932350481064;bHLH_family:0.928679163368;TBX4,5:0.919192015941;EN1,2:0.891587424118;HOXA9_MEIS1:0.856441437046;CRX:0.840043535287;HOX{A4,D4}:0.83511000054;PPARG:0.83067732979;RORA:0.810368888444;GFI1:0.77093501947;VSX1,2:0.735692064884;STAT5{A,B}:0.714706814226;ESRRA:0.703384202925;FOXN1:0.701062064863;HAND1,2:0.695322848168;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.67095087852;MYB:0.670584339241;PAX4:0.664627020424;FOXP1:0.604038300662;SP1:0.602586131569;FOXA2:0.602548188566;E2F1..5:0.5639685066;NKX3-2:0.544671147788;LHX3,4:0.542469145856;T:0.542348760609;ZNF143:0.51152941136;ZNF148:0.505764802594;PATZ1:0.502246933065;RXRA_VDR{dimer}:0.475487233774;NFY{A,B,C}:0.474075435616;TEF:0.464024371201;FOX{I1,J2}:0.444349562154;NFE2:0.442979023494;POU1F1:0.435102366311;TOPORS:0.420983553791;HBP1_HMGB_SSRP1_UBTF:0.388217802039;CUX2:0.372729463013;MZF1:0.34467995943;LMO2:0.343917323429;TLX1..3_NFIC{dimer}:0.342737174762;OCT4_SOX2{dimer}:0.342421634346;CDC5L:0.342294283184;NFIX:0.336770121361;RXR{A,B,G}:0.335166064196;AIRE:0.335072378656;NFE2L2:0.323273169101;NKX2-1,4:0.318991522586;TEAD1:0.317191797618;NRF1:0.303772967282;IRF7:0.302680727756;RFX1:0.296374144896;ALX4:0.294946207605;PDX1:0.290039049566;CDX1,2,4:0.281642581116;IKZF2:0.247017618686;FOXD3:0.246453979333;LEF1_TCF7_TCF7L1,2:0.240321094158;FOXL1:0.228706433046;EVI1:0.222306234499;ZNF423:0.217338744395;PRRX1,2:0.195875552143;CEBPA,B_DDIT3:0.168257896782;HOX{A5,B5}:0.157103092692;SREBF1,2:0.150909572894;PBX1:0.150540410345;NFKB1_REL_RELA:0.1489298411;POU5F1:0.144937728836;HNF4A_NR2F1,2:0.132134879808;YY1:0.115573812338;RREB1:0.105921729498;NR5A1,2:0.0695607783923;GLI1..3:0.0679216101424;BPTF:0.0485650683974;XBP1:0.0399158548928;HLF:0.0369859058004;SOX17:0.0226531378458;HMGA1,2:0.0177402790242;ARID5B:0.0174379470385;ATF2:0.0116294935949;FOSL2:0.00553410148699;SOX{8,9,10}:0.00221583843897;POU2F1..3:0.000340374063752;NR1H4:-0.0180423577584;FOX{F1,F2,J1}:-0.0244017960216;FOX{D1,D2}:-0.0366451713511;GFI1B:-0.0443810091955;ALX1:-0.079064941019;TP53:-0.104951378987;ELF1,2,4:-0.109166874629;IRF1,2:-0.11559351041;XCPE1{core}:-0.131503789705;RFX2..5_RFXANK_RFXAP:-0.133613460604;STAT2,4,6:-0.134687196666;BACH2:-0.147395786753;FOS_FOS{B,L1}_JUN{B,D}:-0.156348492351;AR:-0.172936850807;KLF4:-0.183430138007;TFCP2:-0.190202976454;GATA6:-0.206078221181;MAZ:-0.210256201167;FOXM1:-0.227765661748;ATF6:-0.255861370256;PAX3,7:-0.258800464793;MED-1{core}:-0.270289685516;TLX2:-0.279271777123;ZFP161:-0.28533045508;ZBTB6:-0.293414989928;REST:-0.305530945987;NR3C1:-0.317747873424;MEF2{A,B,C,D}:-0.324731335714;NFIL3:-0.332882510691;SOX2:-0.360313160394;PAX6:-0.366875171512;GTF2I:-0.369903116883;GTF2A1,2:-0.377318093964;EGR1..3:-0.379721674159;PAX5:-0.386491943037;MYFfamily:-0.386772245878;PAX8:-0.388677068851;SOX5:-0.405187058305;FOXO1,3,4:-0.410050876569;MYBL2:-0.410664658208;NANOG:-0.415681002635;AHR_ARNT_ARNT2:-0.453941495131;ZIC1..3:-0.484142659573;POU3F1..4:-0.496932659726;BREu{core}:-0.503306699888;ATF4:-0.507132782084;ATF5_CREB3:-0.520254062867;ETS1,2:-0.532440340361;DMAP1_NCOR{1,2}_SMARC:-0.536634492265;HIC1:-0.543008844815;EBF1:-0.562523929671;SRF:-0.56448682284;TFAP2{A,C}:-0.567289495273;MTE{core}:-0.573430946837;TFDP1:-0.57527100384;PAX2:-0.591130493316;FOXP3:-0.596283304626;SPI1:-0.603887827371;SPIB:-0.623656534856;TFAP2B:-0.625207693179;TAL1_TCF{3,4,12}:-0.64843460203;POU6F1:-0.652577549168;UFEwm:-0.664760378522;SPZ1:-0.669217625123;MTF1:-0.673588762376;NKX3-1:-0.67394151736;GCM1,2:-0.719911880538;NFE2L1:-0.737035883015;JUN:-0.740008532859;EP300:-0.74355620674;PRDM1:-0.743730974297;NHLH1,2:-0.749660302503;HSF1,2:-0.76583770572;RUNX1..3:-0.870479589471;CREB1:-0.874687613965;ZNF384:-0.892598126465;PAX1,9:-0.894578436575;NANOG{mouse}:-0.914160436794;TBP:-0.97127518261;TGIF1:-1.04784730796;ZNF238:-1.10090948979;HIF1A:-1.11164588745;GZF1:-1.12217569769;HES1:-1.14492249943;NKX2-2,8:-1.1730579574;SMAD1..7,9:-1.27308306471;NFATC1..3:-1.33040038049;MAFB:-1.43619825898;TFAP4:-1.95055574357;GATA4:-2.05966442003;HMX1:-2.10460156596 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10497-107C2;search_select_hide=table117:FF:10497-107C2 | |||
}} | }} |
Latest revision as of 14:27, 3 June 2020
Name: | endometrial carcinoma cell line:OMC-2 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11266 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11266
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11266
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.289 |
10 | 10 | 0.948 |
100 | 100 | 0.103 |
101 | 101 | 0.393 |
102 | 102 | 0.397 |
103 | 103 | 0.622 |
104 | 104 | 0.77 |
105 | 105 | 0.363 |
106 | 106 | 0.982 |
107 | 107 | 0.439 |
108 | 108 | 0.934 |
109 | 109 | 0.298 |
11 | 11 | 0.996 |
110 | 110 | 0.233 |
111 | 111 | 0.186 |
112 | 112 | 0.844 |
113 | 113 | 0.256 |
114 | 114 | 0.93 |
115 | 115 | 0.0652 |
116 | 116 | 0.512 |
117 | 117 | 0.011 |
118 | 118 | 0.772 |
119 | 119 | 0.875 |
12 | 12 | 0.244 |
120 | 120 | 0.249 |
121 | 121 | 0.617 |
122 | 122 | 0.312 |
123 | 123 | 0.751 |
124 | 124 | 0.485 |
125 | 125 | 0.169 |
126 | 126 | 0.635 |
127 | 127 | 0.221 |
128 | 128 | 0.258 |
129 | 129 | 0.228 |
13 | 13 | 0.0056 |
130 | 130 | 0.852 |
131 | 131 | 0.509 |
132 | 132 | 0.539 |
133 | 133 | 0.0125 |
134 | 134 | 0.198 |
135 | 135 | 0.00522 |
136 | 136 | 0.07 |
137 | 137 | 0.125 |
138 | 138 | 0.457 |
139 | 139 | 0.514 |
14 | 14 | 0.985 |
140 | 140 | 0.0998 |
141 | 141 | 0.274 |
142 | 142 | 0.915 |
143 | 143 | 0.00132 |
144 | 144 | 0.382 |
145 | 145 | 0.748 |
146 | 146 | 0.777 |
147 | 147 | 0.216 |
148 | 148 | 0.735 |
149 | 149 | 0.339 |
15 | 15 | 0.904 |
150 | 150 | 0.572 |
151 | 151 | 0.992 |
152 | 152 | 0.169 |
153 | 153 | 0.277 |
154 | 154 | 0.0975 |
155 | 155 | 0.915 |
156 | 156 | 0.796 |
157 | 157 | 0.487 |
158 | 158 | 0.651 |
159 | 159 | 0.318 |
16 | 16 | 0.631 |
160 | 160 | 0.402 |
161 | 161 | 0.338 |
162 | 162 | 0.871 |
163 | 163 | 0.996 |
164 | 164 | 0.154 |
165 | 165 | 0.475 |
166 | 166 | 0.693 |
167 | 167 | 0.87 |
168 | 168 | 0.462 |
169 | 169 | 0.0705 |
17 | 17 | 0.448 |
18 | 18 | 0.29 |
19 | 19 | 0.92 |
2 | 2 | 0.367 |
20 | 20 | 0.158 |
21 | 21 | 0.877 |
22 | 22 | 0.967 |
23 | 23 | 0.532 |
24 | 24 | 0.271 |
25 | 25 | 0.491 |
26 | 26 | 0.931 |
27 | 27 | 0.351 |
28 | 28 | 0.297 |
29 | 29 | 0.887 |
3 | 3 | 0.567 |
30 | 30 | 0.172 |
31 | 31 | 0.896 |
32 | 32 | 0.0807 |
33 | 33 | 0.227 |
34 | 34 | 0.883 |
35 | 35 | 0.971 |
36 | 36 | 0.489 |
37 | 37 | 0.137 |
38 | 38 | 0.582 |
39 | 39 | 0.84 |
4 | 4 | 0.995 |
40 | 40 | 0.383 |
41 | 41 | 0.00161 |
42 | 42 | 0.56 |
43 | 43 | 0.996 |
44 | 44 | 0.727 |
45 | 45 | 0.243 |
46 | 46 | 0.995 |
47 | 47 | 0.258 |
48 | 48 | 0.512 |
49 | 49 | 0.779 |
5 | 5 | 0.824 |
50 | 50 | 0.203 |
51 | 51 | 0.803 |
52 | 52 | 0.645 |
53 | 53 | 0.828 |
54 | 54 | 0.886 |
55 | 55 | 0.928 |
56 | 56 | 0.526 |
57 | 57 | 0.324 |
58 | 58 | 0.589 |
59 | 59 | 0.542 |
6 | 6 | 0.764 |
60 | 60 | 0.458 |
61 | 61 | 0.0411 |
62 | 62 | 0.236 |
63 | 63 | 0.453 |
64 | 64 | 0.966 |
65 | 65 | 0.69 |
66 | 66 | 0.263 |
67 | 67 | 0.403 |
68 | 68 | 0.043 |
69 | 69 | 0.395 |
7 | 7 | 0.781 |
70 | 70 | 0.851 |
71 | 71 | 0.183 |
72 | 72 | 0.912 |
73 | 73 | 0.46 |
74 | 74 | 0.148 |
75 | 75 | 0.0347 |
76 | 76 | 0.88 |
77 | 77 | 0.196 |
78 | 78 | 0.776 |
79 | 79 | 0.00252 |
8 | 8 | 0.505 |
80 | 80 | 0.229 |
81 | 81 | 0.0346 |
82 | 82 | 0.201 |
83 | 83 | 0.334 |
84 | 84 | 0.274 |
85 | 85 | 0.259 |
86 | 86 | 0.471 |
87 | 87 | 0.0192 |
88 | 88 | 0.0352 |
89 | 89 | 0.62 |
9 | 9 | 0.403 |
90 | 90 | 0.178 |
91 | 91 | 0.268 |
92 | 92 | 0.783 |
93 | 93 | 0.58 |
94 | 94 | 0.136 |
95 | 95 | 0.172 |
96 | 96 | 0.23 |
97 | 97 | 0.765 |
98 | 98 | 0.849 |
99 | 99 | 0.85 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11266
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100167 adenocarcinoma cell line sample
FF:0101555 endometrial cancer cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002149 (epithelial cell of uterus)
0002255 (stromal cell of endometrium)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
305 (carcinoma)
120 (female reproductive organ cancer)
299 (adenocarcinoma)
3001 (female reproductive endometrioid cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0002384 (connective tissue)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100167 (adenocarcinoma cell line sample)
0101555 (endometrial cancer cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)