FF:10775-110G1: Difference between revisions

Latest revision as of 15:03, 3 June 2020

Name:	lymphoma, malignant, hairy B-cell cell line:MLMA
Species:	Human (Homo sapiens)
Library ID:	CNhs11935
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	female
age	32
cell type	b cell
cell line	MLMA
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005415

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11935		CAGE		DRX007925		DRR008797

Accession ID Hg19

Library id		BAM		CTSS
CNhs11935		DRZ000222		DRZ001607

Accession ID Hg38

Library id		BAM		CTSS
CNhs11935		DRZ011572		DRZ012957

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0678
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.683
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.00763
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0398
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0297
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0666
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0541
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.0947
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0138
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.369
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.179
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.211
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.558
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.125
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0499
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0947
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.538
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0173
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.172
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.346
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0.9
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11935

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0646
MA0003.1	MA0003.1	0.466
MA0004.1	MA0004.1	0.182
MA0006.1	MA0006.1	0.373
MA0007.1	MA0007.1	0.598
MA0009.1	MA0009.1	0.88
MA0014.1	MA0014.1	0.88
MA0017.1	MA0017.1	0.462
MA0018.2	MA0018.2	0.175
MA0019.1	MA0019.1	0.579
MA0024.1	MA0024.1	8.36414e-11
MA0025.1	MA0025.1	0.644
MA0027.1	MA0027.1	0.138
MA0028.1	MA0028.1	1.47263e-6
MA0029.1	MA0029.1	0.652
MA0030.1	MA0030.1	0.346
MA0031.1	MA0031.1	0.958
MA0035.2	MA0035.2	0.255
MA0038.1	MA0038.1	0.00552
MA0039.2	MA0039.2	0.607
MA0040.1	MA0040.1	0.126
MA0041.1	MA0041.1	0.229
MA0042.1	MA0042.1	0.467
MA0043.1	MA0043.1	0.369
MA0046.1	MA0046.1	0.193
MA0047.2	MA0047.2	0.352
MA0048.1	MA0048.1	0.869
MA0050.1	MA0050.1	0.0186
MA0051.1	MA0051.1	0.0781
MA0052.1	MA0052.1	0.0677
MA0055.1	MA0055.1	0.396
MA0057.1	MA0057.1	0.736
MA0058.1	MA0058.1	0.225
MA0059.1	MA0059.1	0.0271
MA0060.1	MA0060.1	1.2369e-10
MA0061.1	MA0061.1	2.27076e-4
MA0062.2	MA0062.2	3.44524e-11
MA0065.2	MA0065.2	0.105
MA0066.1	MA0066.1	0.467
MA0067.1	MA0067.1	0.625
MA0068.1	MA0068.1	0.207
MA0069.1	MA0069.1	0.812
MA0070.1	MA0070.1	0.45
MA0071.1	MA0071.1	0.88
MA0072.1	MA0072.1	0.357
MA0073.1	MA0073.1	0.975
MA0074.1	MA0074.1	0.474
MA0076.1	MA0076.1	1.88951e-10
MA0077.1	MA0077.1	0.685
MA0078.1	MA0078.1	0.306
MA0079.2	MA0079.2	0.332
MA0080.2	MA0080.2	8.52803e-5
MA0081.1	MA0081.1	0.00686
MA0083.1	MA0083.1	3.63714e-4
MA0084.1	MA0084.1	0.322
MA0087.1	MA0087.1	0.356
MA0088.1	MA0088.1	0.0164
MA0090.1	MA0090.1	5.30148e-6
MA0091.1	MA0091.1	0.864
MA0092.1	MA0092.1	0.376
MA0093.1	MA0093.1	0.235
MA0099.2	MA0099.2	2.66734e-10
MA0100.1	MA0100.1	0.0539
MA0101.1	MA0101.1	0.00312
MA0102.2	MA0102.2	0.301
MA0103.1	MA0103.1	0.00109
MA0104.2	MA0104.2	0.00237
MA0105.1	MA0105.1	4.89939e-5
MA0106.1	MA0106.1	0.751
MA0107.1	MA0107.1	0.0041
MA0108.2	MA0108.2	1.13819e-10
MA0111.1	MA0111.1	0.148
MA0112.2	MA0112.2	0.971
MA0113.1	MA0113.1	0.114
MA0114.1	MA0114.1	0.143
MA0115.1	MA0115.1	0.202
MA0116.1	MA0116.1	0.00161
MA0117.1	MA0117.1	0.897
MA0119.1	MA0119.1	0.252
MA0122.1	MA0122.1	0.922
MA0124.1	MA0124.1	0.909
MA0125.1	MA0125.1	0.374
MA0131.1	MA0131.1	0.075
MA0135.1	MA0135.1	0.0427
MA0136.1	MA0136.1	4.0761e-9
MA0137.2	MA0137.2	0.1
MA0138.2	MA0138.2	0.699
MA0139.1	MA0139.1	0.346
MA0140.1	MA0140.1	0.0725
MA0141.1	MA0141.1	0.736
MA0142.1	MA0142.1	0.0123
MA0143.1	MA0143.1	0.243
MA0144.1	MA0144.1	0.00731
MA0145.1	MA0145.1	0.271
MA0146.1	MA0146.1	0.603
MA0147.1	MA0147.1	7.96415e-4
MA0148.1	MA0148.1	0.569
MA0149.1	MA0149.1	0.0792
MA0150.1	MA0150.1	0.0145
MA0152.1	MA0152.1	0.345
MA0153.1	MA0153.1	0.0461
MA0154.1	MA0154.1	0.0768
MA0155.1	MA0155.1	0.24
MA0156.1	MA0156.1	5.1369e-6
MA0157.1	MA0157.1	0.27
MA0159.1	MA0159.1	0.583
MA0160.1	MA0160.1	0.484
MA0162.1	MA0162.1	0.509
MA0163.1	MA0163.1	1.03325e-5
MA0164.1	MA0164.1	0.983
MA0258.1	MA0258.1	0.642
MA0259.1	MA0259.1	0.0837

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11935

Novel motif	Logo	P-value
1	1	0.139
10	10	0.0253
100	100	0.607
101	101	0.244
102	102	0.435
103	103	0.563
104	104	0.486
105	105	0.746
106	106	0.811
107	107	0.745
108	108	0.794
109	109	0.244
11	11	0.269
110	110	0.511
111	111	0.111
112	112	0.717
113	113	0.617
114	114	0.939
115	115	0.749
116	116	0.553
117	117	0.014
118	118	0.475
119	119	0.364
12	12	0.697
120	120	0.444
121	121	0.39
122	122	0.326
123	123	0.0431
124	124	0.173
125	125	0.224
126	126	0.509
127	127	0.799
128	128	0.525
129	129	0.543
13	13	0.158
130	130	0.494
131	131	0.169
132	132	0.0975
133	133	0.958
134	134	0.713
135	135	0.943
136	136	0.0409
137	137	0.458
138	138	0.979
139	139	0.399
14	14	0.787
140	140	0.692
141	141	0.304
142	142	0.562
143	143	0.383
144	144	0.212
145	145	0.103
146	146	0.453
147	147	0.0694
148	148	0.134
149	149	0.346
15	15	0.153
150	150	0.781
151	151	0.636
152	152	0.0709
153	153	0.712
154	154	0.901
155	155	0.0118
156	156	0.655
157	157	0.134
158	158	0.807
159	159	0.243
16	16	0.999
160	160	0.78
161	161	0.314
162	162	0.55
163	163	0.202
164	164	0.502
165	165	0.507
166	166	0.21
167	167	0.172
168	168	0.887
169	169	0.341
17	17	0.761
18	18	0.926
19	19	0.357
2	2	0.32
20	20	0.454
21	21	0.354
22	22	0.493
23	23	0.07
24	24	0.789
25	25	0.0219
26	26	0.157
27	27	0.78
28	28	0.496
29	29	0.0193
3	3	0.271
30	30	0.117
31	31	0.617
32	32	0.209
33	33	0.946
34	34	0.342
35	35	0.317
36	36	0.0668
37	37	0.638
38	38	0.842
39	39	0.439
4	4	0.0311
40	40	0.16
41	41	0.666
42	42	0.135
43	43	0.636
44	44	0.242
45	45	0.423
46	46	0.221
47	47	0.0757
48	48	0.198
49	49	0.135
5	5	0.555
50	50	0.897
51	51	0.929
52	52	0.285
53	53	0.408
54	54	0.564
55	55	0.507
56	56	0.816
57	57	0.303
58	58	0.169
59	59	0.896
6	6	0.866
60	60	0.715
61	61	0.0923
62	62	0.165
63	63	0.814
64	64	0.51
65	65	0.322
66	66	0.0012
67	67	0.974
68	68	0.0573
69	69	0.355
7	7	0.107
70	70	0.354
71	71	0.0344
72	72	0.875
73	73	0.675
74	74	0.913
75	75	0.00283
76	76	0.332
77	77	0.0656
78	78	0.115
79	79	0.556
8	8	0.509
80	80	0.89
81	81	0.0873
82	82	0.433
83	83	0.517
84	84	0.402
85	85	0.0717
86	86	0.426
87	87	0.0415
88	88	0.49
89	89	0.45
9	9	0.556
90	90	6.41817e-4
91	91	0.437
92	92	0.658
93	93	0.707
94	94	0.496
95	95	0.246
96	96	0.656
97	97	0.163
98	98	0.591
99	99	0.385

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11935

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101518 B-lymphoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)
0101518 (B-lymphoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
+|DRA_sample_Accession=CAGE@SAMD00005415
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0000034,CL:0002032,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0000838,CL:0002031,CL:0000037,CL:0000566,CL:0000837,CL:0000826,CL:0000051
+|accession_numbers=CAGE;DRX007925;DRR008797;DRZ000222;DRZ001607;DRZ011572;DRZ012957
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:0060058,DOID:14566,DOID:0060083
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100104,FF:0101518
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!2.71!507.27!MEF2B;;chr11:111249993..111250006,-!p1@POU2AF1!2.68!482.18!POU2AF1;;chr19:50922187..50922204,+!p1@SPIB!2.50!316.17!SPIB;;chr6:391743..391759,+!p1@IRF4!2.40!251.01!IRF4;;chr16:85932760..85932775,+!p1@IRF8!2.36!228.00!IRF8;;chr17:38020392..38020477,-!p1@IKZF3!1.95!87.45!IKZF3;;chr9:37034469..37034474,-!p1@PAX5!1.87!73.32!PAX5;;chr11:47400078..47400106,-!p1@SPI1!1.86!71.49!SPI1;;chr7:50348268..50348366,+!p4@IKZF1!1.82!65.40!IKZF1;;chr14:75988831..75988847,+!p2@BATF!1.77!58.46!BATF;;chr2:61108695..61108753,+!p1@REL!1.64!282.19!REL;;chr2:231090471..231090504,+!p2@SP140!1.63!41.65!SP140;;chr5:158526917..158526932,-!p1@EBF1!1.62!97.92!EBF1;;chr14:75988771..75988826,+!p1@BATF!1.62!53.10!BATF;;chrX:131623026..131623039,-!p5@MBNL3!1.62!40.80!MBNL3;;chr2:100759037..100759058,-!p2@AFF3!1.60!38.36!AFF3;;chr19:42636586..42636607,-!p1@POU2F2!1.55!93.29!POU2F2;;chr3:101546827..101546847,+!p2@NFKBIZ!1.55!48.23!NFKBIZ;;chr5:88178983..88179012,-!p1@MEF2C!1.51!229.70!MEF2C;;chr18:52989031..52989079,-!p2@TCF4!1.51!71.49!TCF4;;chr2:185463247..185463263,+!p1@ZNF804A!1.50!53.47!ZNF804A;;chr2:61108771..61108789,+!p4@REL!1.50!46.16!REL;;chr2:61108808..61108821,+!p3@REL!1.50!38.73!REL;;chr2:100759010..100759035,-!p1@AFF3!1.49!30.20!AFF3;;chr3:71355163..71355209,-!p5@FOXP1!1.48!39.70!FOXP1;;chr2:231090433..231090469,+!p1@SP140!1.48!29.11!SP140;;chr2:61108650..61108687,+!p2@REL!1.46!130.93!REL;;chr7:101460882..101460923,+!p5@CUX1!1.43!25.94!CUX1;;chr20:50159198..50159299,-!p1@NFATC2!1.42!36.17!NFATC2;;chr17:38020557..38020572,-!p4@IKZF3!1.40!23.99!IKZF3;;chr13:41593425..41593480,-!p1@ELF1!1.39!146.27!ELF1;;chr2:68592406..68592424,+!p1@PLEK!1.38!23.02!PLEK;;chr17:37934204..37934241,-!p3@IKZF3!1.37!22.41!IKZF3;;chr18:53089453..53089482,-!p11@TCF4!1.34!20.95!TCF4;;chr2:60780607..60780624,-!p2@BCL11A!1.33!60.90!BCL11A;;chr3:32023232..32023273,+!p1@ZNF860!1.33!29.11!ZNF860;;chr8:135577829..135577861,-!p6@ZFAT!1.32!20.10!ZFAT;;chr8:60031619..60031676,-!p1@TOX!1.31!41.41!TOX;;chr13:41593493..41593506,-!p8@ELF1!1.31!19.24!ELF1;;chr20:42295745..42295765,+!p1@MYBL2!1.27!282.19!MYBL2;;chr11:6947720..6947812,+!p1@ZNF215!1.27!22.65!ZNF215;;chr2:60778035..60778060,-!p4@BCL11A!1.27!21.07!BCL11A;;chr18:53089538..53089578,-!p14@TCF4!1.26!17.17!TCF4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.05!ZBED1;;chr1:25256756..25256774,-!p1@RUNX3!1.24!30.45!RUNX3;;chr9:37034258..37034270,-!p3@PAX5!1.23!15.83!PAX5;;chr11:31832658..31832681,-!p1@PAX6!1.20!14.86!PAX6;;chr10:64576105..64576133,-!p1@EGR2!1.19!29.84!EGR2;;chr2:60781201..60781258,-!p3@BCL11A!1.19!14.62!BCL11A;;chr10:35415951..35415975,+!p8@CREM!1.18!19.61!CREM;;chrX:131623044..131623089,-!p1@MBNL3!1.17!57.24!MBNL3;;chrX:131622988..131623006,-!p8@MBNL3!1.17!13.76!MBNL3;;chr18:53089493..53089517,-!p15@TCF4!1.17!13.76!TCF4;;chr7:50343634..50343717,+!p2@IKZF1!1.17!13.76!IKZF1;;chr19:22235279..22235301,+!p1@ZNF257!1.16!25.21!ZNF257;;chr5:158526756..158526797,-!p3@EBF1!1.16!13.52!EBF1;;chr20:42295713..42295738,+!p2@MYBL2!1.15!76.97!MYBL2;;chr5:88179017..88179046,-!p2@MEF2C!1.15!51.88!MEF2C;;chr1:226595648..226595659,-!p3@PARP1!1.14!21.44!PARP1;;chr1:167298300..167298319,+!p2@POU2F1!1.14!12.67!POU2F1;;chr19:45579725..45579743,-!p1@ZNF296!1.13!56.51!ZNF296;;chr8:60031762..60031803,-!p3@TOX!1.13!18.39!TOX;;chr7:50344251..50344288,+!p3@IKZF1!1.12!12.18!IKZF1;;chr6:34204973..34204990,+!p4@HMGA1!1.11!158.45!HMGA1;;chr2:231090344..231090361,-!p3@SP110!1.10!11.45!SP110;;chr15:76629123..76629151,+!p1@ISL2!1.08!12.18!ISL2;;chr5:142814241..142814278,-!p12@NR3C1!1.08!11.08!NR3C1;;chr1:23857698..23857733,-!p1@E2F2!1.07!19.97!E2F2;;chr19:19976683..19976709,+!p1@ZNF253!1.06!47.13!ZNF253;;chr8:60031682..60031710,-!p2@TOX!1.06!17.05!TOX;;chr8:60031809..60031835,-!p4@TOX!1.05!13.15!TOX;;chr9:37034186..37034216,-!p2@PAX5!1.05!10.11!PAX5;;chr20:46130619..46130664,+!p1@NCOA3!1.03!263.44!NCOA3;;chr4:185395590..185395627,-!p3@IRF2!1.03!12.18!IRF2;;chr18:53257068..53257086,-!p12@TCF4!1.01!12.91!TCF4;;chr18:52989001..52989030,-!p10@TCF4!1.01!10.23!TCF4;;chr17:37934188..37934202,-!p8@IKZF3!1.01!9.13!IKZF3;;chr3:71180051..71180085,-!p21@FOXP1!1.01!9.13!FOXP1;;chrX:147582254..147582320,+!p1@AFF2!1.01!9.13!AFF2;;chr2:60780753..60780800,-!p1@BCL11A!1.00!44.94!BCL11A;;chr6:144385698..144385742,-!p2@PLAGL1!1.00!10.96!PLAGL1;;chr5:158524625..158524669,-!p6@EBF1!1.00!9.01!EBF1;;chr11:31832807..31832823,-!p4@PAX6!1.00!9.01!PAX6;;chr7:101459230..101459243,+!p2@CUX1!0.99!43.97!CUX1;;chrX:131622958..131622978,-!p3@MBNL3!0.99!11.08!MBNL3;;chr11:19262461..19262476,-!p5@E2F8!0.99!8.77!E2F8;;chr2:68592394..68592405,+!p2@PLEK!0.99!8.77!PLEK;;chr3:187463248..187463264,-!p1@BCL6!0.98!187.80!BCL6;;chr12:54447599..54447630,+!p3@HOXC4!0.98!10.47!HOXC4;;chr9:37027156..37027193,-!p4@PAX5!0.98!8.65!PAX5;;chr7:64126535..64126559,+!p2@ZNF107!0.97!18.27!ZNF107;;chr18:53089521..53089533,-!p22@TCF4!0.97!8.40!TCF4;;chr20:46130672..46130686,+!p2@NCOA3!0.96!37.76!NCOA3;;chr1:151319654..151319698,-!p2@RFX5!0.95!17.66!RFX5;;chr1:38512457..38512474,-!p1@POU3F1!0.95!8.65!POU3F1;;chr21:43256981..43257008,-!p2@PRDM15!0.95!7.92!PRDM15;;chr18:6414884..6414942,-!p1@L3MBTL4!0.94!9.74!L3MBTL4;;chr17:42295777..42295816,-!p7@UBTF!0.94!9.38!UBTF;;chr14:75988851..75988862,+!p3@BATF!0.94!7.67!BATF;;chr9:1050331..1050363,+!p1@DMRT2!0.94!7.67!DMRT2;;chr18:77155922..77155939,+!p1@NFATC1!0.93!21.19!NFATC1;;chr6:157098579..157098634,+!p4@ARID1B!0.93!17.42!ARID1B;;chr18:53089770..53089786,-!p65@TCF4!0.93!7.55!TCF4;;chr1:158979686..158979745,+!p1@IFI16!0.92!252.11!IFI16;;chr3:71179699..71179744,-!p2@FOXP1!0.92!57.12!FOXP1;;chr12:54785074..54785122,-!p2@ZNF385A!0.92!11.57!ZNF385A;;chr17:38020607..38020621,-!p9@IKZF3!0.92!7.31!IKZF3;;chr2:100758991..100759009,-!p3@AFF3!0.91!7.19!AFF3;;chr7:50344289..50344323,+!p1@IKZF1!0.91!7.06!IKZF1;;chr11:31832610..31832639,-!p5@PAX6!0.91!7.06!PAX6;;chr7:64838786..64838809,+!p2@ZNF92!0.90!41.41!ZNF92;;chr19:20011775..20011800,+!p2@ZNF93!0.89!12.54!ZNF93;;chr19:22193731..22193751,-!p1@ZNF208!0.89!6.82!ZNF208;;chr2:61108217..61108242,+!p9@REL!0.89!6.82!REL;;chr4:109089901..109089930,-!p3@LEF1!0.89!6.82!LEF1;;chr15:42749722..42749739,-!p2@ZFP106!0.88!12.30!ZFP106;;chrX:129244655..129244697,-!p4@ELF4!0.88!12.18!ELF4;;chr4:185395633..185395651,-!p2@IRF2!0.88!10.96!IRF2;;chr16:85936412..85936431,+!p2@IRF8!0.88!6.58!IRF8;;chr7:101459263..101459310,+!p1@CUX1!0.87!402.65!CUX1;;chr18:53257027..53257052,-!p3@TCF4!0.87!26.92!TCF4;;chr7:64023410..64023428,-!p2@ZNF680!0.87!10.35!ZNF680;;chr12:80083807..80083859,-!p11@PAWR!0.87!8.16!PAWR;;chr19:23299814..23299844,+!p1@ZNF730!0.87!8.04!ZNF730;;chr2:24714729..24714761,+!p1@NCOA1!0.87!6.46!NCOA1;;chr7:64126503..64126528,+!p1@ZNF107!0.86!47.01!ZNF107;;chr19:19976714..19976729,+!p3@ZNF253!0.86!12.18!ZNF253;;chr2:61108878..61108891,+!p5@REL!0.86!6.21!REL;;chr3:170078965..170078975,+!p23@SKIL!0.86!6.21!SKIL;;chr3:71180117..71180134,-!p60@FOXP1!0.86!6.21!FOXP1;;chr10:35484053..35484076,+!p1@CREM!0.85!15.83!CREM;;chr19:36391434..36391450,-!p1@NFKBID!0.85!12.30!NFKBID;;chr18:53255839..53255854,-!p13@TCF4!0.85!7.19!TCF4;;chr16:11876415..11876429,-!p7@ZC3H7A!0.85!6.09!ZC3H7A;;chr7:27192185..27192209,-!p1@HOXA3!0.85!6.09!HOXA3;;chr2:42795745..42795824,+!p1@MTA3!0.84!57.85!MTA3;;chr4:109089095..109089144,-!p6@LEF1!0.84!5.85!LEF1;;chr11:19262421..19262455,-!p3@E2F8!0.84!5.85!E2F8;;chr3:187463179..187463201,-!p2@BCL6!0.83!25.45!BCL6;;chr13:74708029..74708077,-!p2@KLF12!0.83!17.54!KLF12;;chr5:158526693..158526706,-!p8@EBF1!0.83!5.72!EBF1;;chr17:37934138..37934150,-!p12@IKZF3!0.83!5.72!IKZF3;;chr3:71180088..71180107,-!p48@FOXP1!0.83!5.72!FOXP1;;chr19:42636625..42636632,-!p2@POU2F2!0.83!5.72!POU2F2;;chr19:23941680..23941704,-!p1@ZNF681!0.82!17.17!ZNF681;;chr19:13213704..13213726,-!p3@LYL1!0.82!7.67!LYL1;;chr17:38020516..38020544,-!p5@IKZF3!0.82!5.60!IKZF3;;chr6:41673552..41673571,-!p10@TFEB!0.82!5.60!TFEB;;chr8:135577814..135577826,-!p12@ZFAT!0.82!5.60!ZFAT;;chr19:19779619..19779670,+!p1@ZNF101!0.81!16.20!ZNF101;;chr11:47237922..47237964,+!p4@DDB2!0.81!6.46!DDB2;;chr2:60780730..60780742,-!p5@BCL11A!0.81!5.48!BCL11A;;chr7:99156314..99156372,+!p4@ZNF655!0.80!19.12!ZNF655;;chr5:134369905..134369972,-!p1@PITX1!0.80!8.40!PITX1;;chr5:142780237..142780261,-!p7@NR3C1!0.80!5.36!NR3C1;;chr9:117150254..117150271,-!p1@AKNA!0.79!15.10!AKNA;;chr4:146859626..146859669,-!p2@ZNF827!0.79!7.79!ZNF827;;chr2:100759060..100759073,-!p8@AFF3!0.79!5.24!AFF3;;chr5:142814316..142814335,-!p18@NR3C1!0.79!5.24!NR3C1;;chrX:129244430..129244442,-!p5@ELF4!0.79!5.12!ELF4;;chr16:85936539..85936562,+!p3@IRF8!0.79!5.12!IRF8;;chr1:226411644..226411666,+!p3@MIXL1!0.79!5.12!MIXL1;;chr5:138609782..138609826,+!p5@MATR3!0.78!35.32!MATR3;;chr19:20011744..20011770,+!p1@ZNF93!0.78!20.95!ZNF93;;chr7:99070527..99070542,+!p2@ZNF789!0.78!11.94!ZNF789;;chr19:24097706..24097731,+!p2@ZNF726!0.78!10.23!ZNF726;;chr11:19262486..19262512,-!p4@E2F8!0.78!6.46!E2F8;;chr7:27196267..27196311,-!p1@HOXA7!0.78!4.99!HOXA7;;chr12:69753448..69753577,+!p1@YEATS4!0.77!107.30!YEATS4;;chr3:187463220..187463232,-!p3@BCL6!0.77!15.95!BCL6;;chr7:128577972..128578047,+!p1@IRF5!0.77!8.04!IRF5;;chr3:170076314..170076334,+!p2@SKIL!0.77!6.58!SKIL;;chr11:118307179..118307223,+!p1@MLL!0.76!159.55!MLL;;chr20:32274179..32274213,-!p1@E2F1!0.76!35.08!E2F1;;chrX:129402866..129402880,-!p1@ZNF280C!0.76!30.33!ZNF280C;;chr10:35415882..35415941,+!p4@CREM!0.76!22.90!CREM;;chr18:53257001..53257015,-!p5@TCF4!0.76!8.65!TCF4;;chr17:38020481..38020506,-!p7@IKZF3!0.76!4.75!IKZF3;;chr18:53254566..53254567,-!p8@TCF4!0.75!7.92!TCF4;;chr2:42795453..42795476,+!p11@MTA3!0.75!4.63!MTA3;;chr14:69263043..69263069,-!p8@ZFP36L1!0.75!4.63!ZFP36L1;;chr5:158526709..158526741,-!p7@EBF1!0.75!4.63!EBF1;;chr14:55493763..55493824,-!p1@WDHD1!0.74!37.39!WDHD1;;chr19:20748574..20748599,-!p1@ZNF737!0.74!30.20!ZNF737;;chr12:96588279..96588299,+!p4@ELK3!0.74!23.75!ELK3;;chr17:41277372..41277418,-!p1@BRCA1!0.74!18.03!BRCA1;;chr15:76629097..76629120,+!p2@ISL2!0.74!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+|ffid_belonging_in_development=CL:0000134,CL:0000051
 |fonse_cell_line=FF:0100104
 |fonse_cell_line_closure=FF:0100104
@@ Line 36: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lymphoma%252c%2520malignant%252c%2520hairy%2520B-cell%2520cell%2520line%253aMLMA.CNhs11935.10775-110G1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lymphoma%252c%2520malignant%252c%2520hairy%2520B-cell%2520cell%2520line%253aMLMA.CNhs11935.10775-110G1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/lymphoma%252c%2520malignant%252c%2520hairy%2520B-cell%2520cell%2520line%253aMLMA.CNhs11935.10775-110G1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lymphoma%252c%2520malignant%252c%2520hairy%2520B-cell%2520cell%2520line%253aMLMA.CNhs11935.10775-110G1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/lymphoma%252c%2520malignant%252c%2520hairy%2520B-cell%2520cell%2520line%253aMLMA.CNhs11935.10775-110G1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10775-110G1
 |is_a=EFO:0002091;;FF:0000210;;FF:0101518
 |is_obsolete=
+|library_id=CNhs11935
+|library_id_phase_based=2:CNhs11935
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10775
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10775
 |name=lymphoma, malignant, hairy B-cell cell line:MLMA
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11935,LSID835,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=110
 |rna_catalog_number=
@@ Line 59: / Line 78: @@
 |rna_weight_ug=9.42435
 |sample_age=32
+|sample_category=cell lines
 |sample_cell_catalog=jcrb0146
 |sample_cell_line=MLMA
@@ Line 80: / Line 100: @@
 |top_motifs=POU5F1:3.18856068881;POU2F1..3:3.1411673349;PDX1:2.22820804656;VSX1,2:2.13344885907;E2F1..5:2.0224762921;PAX6:1.88623668214;AIRE:1.84546550935;YY1:1.68578282868;MYB:1.61315443819;FOXA2:1.59206466145;NFY{A,B,C}:1.56498865045;ELK1,4_GABP{A,B1}:1.49239044616;OCT4_SOX2{dimer}:1.45687407748;ELF1,2,4:1.38207612015;NKX2-1,4:1.22996352229;BREu{core}:1.20317764813;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.16484688084;DMAP1_NCOR{1,2}_SMARC:1.10579668615;HOXA9_MEIS1:1.10431605804;FOXP3:1.04964132736;NFKB1_REL_RELA:0.922603006486;ZEB1:0.911044286827;CDC5L:0.875342942276;SNAI1..3:0.796308909779;GFI1:0.757396718092;NRF1:0.748856528851;SPI1:0.733025304002;CUX2:0.721039028289;RUNX1..3:0.711025879467;ZNF143:0.707015654804;TFDP1:0.663777643932;EVI1:0.663734641533;MYOD1:0.645618445815;RFX2..5_RFXANK_RFXAP:0.579776830456;FOX{I1,J2}:0.524391878889;FOXP1:0.521657222088;NKX6-1,2:0.512659015133;SPIB:0.512401721611;HOX{A5,B5}:0.484364168728;FOX{F1,F2,J1}:0.451529715271;FOXN1:0.44594797241;GATA6:0.441472084483;NR6A1:0.439420268473;TGIF1:0.431847801995;PBX1:0.426781684071;PITX1..3:0.42189176857;IRF1,2:0.38762008802;LMO2:0.380237308237;AHR_ARNT_ARNT2:0.335756495706;SOX{8,9,10}:0.322832532183;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.322112575742;bHLH_family:0.321942944379;PAX3,7:0.315261901083;TOPORS:0.30514492567;DBP:0.298483759933;NKX2-2,8:0.296308725261;POU1F1:0.2897632848;ALX1:0.254326935515;NANOG:0.251018123501;SPZ1:0.235320524744;BPTF:0.205816562985;ETS1,2:0.201868574599;SOX5:0.198739255155;STAT5{A,B}:0.180497420316;FOXQ1:0.178003908388;CDX1,2,4:0.173377213752;NANOG{mouse}:0.162007362827;HOX{A4,D4}:0.148348694713;PAX4:0.127935444697;HES1:0.12748697165;ATF5_CREB3:0.125049255812;NR5A1,2:0.10298716614;PAX8:0.0832571641287;EN1,2:0.069535757234;ZBTB16:0.0568692322668;HNF4A_NR2F1,2:-0.0211143575518;ESRRA:-0.0290446432537;ADNP_IRX_SIX_ZHX:-0.0548203146988;IKZF2:-0.0956332183782;SOX17:-0.103315049039;IRF7:-0.110312116278;PRRX1,2:-0.110432853177;TEF:-0.115012122361;IKZF1:-0.118621612166;HAND1,2:-0.123279302032;EBF1:-0.126083854326;ATF4:-0.142809542416;NKX3-2:-0.171376706534;HSF1,2:-0.193336028111;PAX1,9:-0.193912862211;STAT1,3:-0.230402197617;NFIX:-0.263486376351;PAX2:-0.265270058784;HOX{A6,A7,B6,B7}:-0.300938641475;MYFfamily:-0.310856530939;TLX2:-0.315563201289;HNF1A:-0.318700857832;AR:-0.337361010007;ZNF384:-0.38616884898;ZNF148:-0.393963228635;LEF1_TCF7_TCF7L1,2:-0.420833408063;PPARG:-0.423874253094;RXRA_VDR{dimer}:-0.432939736436;NFIL3:-0.451947071376;ESR1:-0.454207919894;RBPJ:-0.461251591749;RORA:-0.475184374693;FOXM1:-0.480392492391;MEF2{A,B,C,D}:-0.483429025204;LHX3,4:-0.493769964978;ARID5B:-0.53029860226;NKX2-3_NKX2-5:-0.544582595821;ZFP161:-0.548969138644;MYBL2:-0.558077556005;FOXO1,3,4:-0.567019682929;NFE2L1:-0.570748207328;NFATC1..3:-0.571695605584;UFEwm:-0.59104377118;FOX{D1,D2}:-0.613089330216;POU3F1..4:-0.625633222138;HBP1_HMGB_SSRP1_UBTF:-0.655596866953;FOSL2:-0.657132895128;GCM1,2:-0.671454387746;FOS_FOS{B,L1}_JUN{B,D}:-0.680818175752;NKX3-1:-0.685129250471;CRX:-0.692027650974;ALX4:-0.695913889984;FOXD3:-0.731539452083;PRDM1:-0.731776880751;BACH2:-0.73607917819;MAFB:-0.746437709574;TP53:-0.749794352545;SREBF1,2:-0.774216648796;KLF4:-0.806203041294;MTE{core}:-0.810626923902;CEBPA,B_DDIT3:-0.814325005216;HMX1:-0.815761705827;ONECUT1,2:-0.818054022259;MED-1{core}:-0.825973460953;NR1H4:-0.843079812294;RFX1:-0.843178427414;HIC1:-0.851235024374;GFI1B:-0.854624959442;NFE2:-0.856312641598;ATF2:-0.869017936219;GATA4:-0.891228560156;ZNF238:-0.892605893875;SMAD1..7,9:-0.895036851122;GZF1:-0.900796437666;CREB1:-0.907312115383;JUN:-0.930306580162;SRF:-0.968263851242;HIF1A:-0.995326612207;XBP1:-1.00763665819;FOXL1:-1.02370115688;ATF6:-1.04334269009;ZIC1..3:-1.05739027754;NHLH1,2:-1.06094276773;TFAP4:-1.06506636629;SOX2:-1.07246895056;HLF:-1.07653100987;ZNF423:-1.08634379111;MTF1:-1.0880749996;REST:-1.1115898177;TAL1_TCF{3,4,12}:-1.12011488853;GLI1..3:-1.12525546201;EGR1..3:-1.19155283037;POU6F1:-1.20667525893;STAT2,4,6:-1.25975539657;RREB1:-1.27355249929;NFE2L2:-1.28046992279;TBP:-1.2839409114;TFAP2B:-1.28737735442;MZF1:-1.28981340716;RXR{A,B,G}:-1.43024745446;TBX4,5:-1.44428505358;SP1:-1.47131464248;TEAD1:-1.47164325615;HMGA1,2:-1.53197186078;TFCP2:-1.53658992931;GTF2I:-1.54100658917;ZBTB6:-1.61374985855;MAZ:-1.63293771455;EP300:-1.63709129255;NR3C1:-1.64574897049;XCPE1{core}:-1.65398319187;TFAP2{A,C}:-1.72833020869;GTF2A1,2:-1.76203578861;T:-1.7968292437;PATZ1:-1.93677597555;PAX5:-1.94291092799;TLX1..3_NFIC{dimer}:-2.04066501916
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10775-110G1;search_select_hide=table117:FF:10775-110G1
 }}

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FF:10775-110G1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:03, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0