FF:11899-125E9: Difference between revisions

Latest revision as of 18:27, 4 June 2020

Name:	Hep-2 cells mock treated, biol_rep2
Species:	Human (Homo sapiens)
Library ID:	CNhs13500
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	56
cell type	unclassifiable
cell line	Hep-2
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	3b
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005404

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13500		CAGE		DRX007783		DRR008655

Accession ID Hg19

Library id		BAM		CTSS
CNhs13500		DRZ000080		DRZ001465

Accession ID Hg38

Library id		BAM		CTSS
CNhs13500		DRZ011430		DRZ012815

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0107
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0.828
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.511
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0677
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0269
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.186
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.133
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.00384
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.00345
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.126
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.731
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.42
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.814
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.422
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.582
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0.126
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.0383
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13500

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0478
MA0003.1	MA0003.1	0.98
MA0004.1	MA0004.1	0.13
MA0006.1	MA0006.1	0.435
MA0007.1	MA0007.1	0.152
MA0009.1	MA0009.1	0.788
MA0014.1	MA0014.1	0.752
MA0017.1	MA0017.1	0.697
MA0018.2	MA0018.2	0.94
MA0019.1	MA0019.1	0.866
MA0024.1	MA0024.1	7.48717e-9
MA0025.1	MA0025.1	0.186
MA0027.1	MA0027.1	0.79
MA0028.1	MA0028.1	1.24733e-5
MA0029.1	MA0029.1	0.737
MA0030.1	MA0030.1	0.397
MA0031.1	MA0031.1	0.187
MA0035.2	MA0035.2	0.427
MA0038.1	MA0038.1	0.952
MA0039.2	MA0039.2	0.0291
MA0040.1	MA0040.1	0.269
MA0041.1	MA0041.1	0.342
MA0042.1	MA0042.1	0.513
MA0043.1	MA0043.1	0.0424
MA0046.1	MA0046.1	0.417
MA0047.2	MA0047.2	0.852
MA0048.1	MA0048.1	0.0981
MA0050.1	MA0050.1	0.0421
MA0051.1	MA0051.1	0.62
MA0052.1	MA0052.1	0.00441
MA0055.1	MA0055.1	1.49238e-4
MA0057.1	MA0057.1	0.174
MA0058.1	MA0058.1	0.0761
MA0059.1	MA0059.1	0.0201
MA0060.1	MA0060.1	0.0425
MA0061.1	MA0061.1	0.0195
MA0062.2	MA0062.2	0.0122
MA0065.2	MA0065.2	0.0246
MA0066.1	MA0066.1	0.715
MA0067.1	MA0067.1	0.274
MA0068.1	MA0068.1	7.02036e-4
MA0069.1	MA0069.1	0.333
MA0070.1	MA0070.1	0.654
MA0071.1	MA0071.1	0.0915
MA0072.1	MA0072.1	0.717
MA0073.1	MA0073.1	0.238
MA0074.1	MA0074.1	0.887
MA0076.1	MA0076.1	2.2518e-4
MA0077.1	MA0077.1	0.819
MA0078.1	MA0078.1	0.137
MA0079.2	MA0079.2	0.381
MA0080.2	MA0080.2	2.40031e-8
MA0081.1	MA0081.1	0.279
MA0083.1	MA0083.1	0.00156
MA0084.1	MA0084.1	0.405
MA0087.1	MA0087.1	0.551
MA0088.1	MA0088.1	0.0143
MA0090.1	MA0090.1	0.00188
MA0091.1	MA0091.1	0.517
MA0092.1	MA0092.1	0.964
MA0093.1	MA0093.1	0.0792
MA0099.2	MA0099.2	0.00759
MA0100.1	MA0100.1	0.335
MA0101.1	MA0101.1	0.0912
MA0102.2	MA0102.2	0.787
MA0103.1	MA0103.1	0.0252
MA0104.2	MA0104.2	5.54243e-4
MA0105.1	MA0105.1	0.289
MA0106.1	MA0106.1	0.919
MA0107.1	MA0107.1	0.0154
MA0108.2	MA0108.2	0.298
MA0111.1	MA0111.1	0.707
MA0112.2	MA0112.2	0.0586
MA0113.1	MA0113.1	0.865
MA0114.1	MA0114.1	0.0195
MA0115.1	MA0115.1	0.112
MA0116.1	MA0116.1	0.658
MA0117.1	MA0117.1	0.924
MA0119.1	MA0119.1	0.874
MA0122.1	MA0122.1	0.891
MA0124.1	MA0124.1	0.808
MA0125.1	MA0125.1	0.436
MA0131.1	MA0131.1	0.238
MA0135.1	MA0135.1	0.919
MA0136.1	MA0136.1	3.62378e-4
MA0137.2	MA0137.2	0.0266
MA0138.2	MA0138.2	0.0998
MA0139.1	MA0139.1	0.706
MA0140.1	MA0140.1	0.734
MA0141.1	MA0141.1	0.00713
MA0142.1	MA0142.1	0.981
MA0143.1	MA0143.1	0.113
MA0144.1	MA0144.1	0.449
MA0145.1	MA0145.1	0.935
MA0146.1	MA0146.1	0.221
MA0147.1	MA0147.1	3.71407e-4
MA0148.1	MA0148.1	0.304
MA0149.1	MA0149.1	0.0512
MA0150.1	MA0150.1	0.4
MA0152.1	MA0152.1	0.391
MA0153.1	MA0153.1	0.0146
MA0154.1	MA0154.1	0.495
MA0155.1	MA0155.1	0.215
MA0156.1	MA0156.1	0.0608
MA0157.1	MA0157.1	0.128
MA0159.1	MA0159.1	0.176
MA0160.1	MA0160.1	0.0281
MA0162.1	MA0162.1	0.274
MA0163.1	MA0163.1	0.203
MA0164.1	MA0164.1	0.203
MA0258.1	MA0258.1	0.991
MA0259.1	MA0259.1	0.0148

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13500

Novel motif	Logo	P-value
1	1	0.148
10	10	0.07
100	100	0.0292
101	101	0.272
102	102	0.865
103	103	0.842
104	104	0.769
105	105	0.108
106	106	0.00248
107	107	0.0658
108	108	0.709
109	109	0.00277
11	11	0.957
110	110	0.483
111	111	0.619
112	112	0.248
113	113	0.00149
114	114	0.941
115	115	0.956
116	116	0.528
117	117	0.207
118	118	0.143
119	119	0.955
12	12	0.871
120	120	0.0532
121	121	0.608
122	122	0.192
123	123	0.121
124	124	0.694
125	125	0.765
126	126	0.838
127	127	0.2
128	128	6.27223e-5
129	129	0.281
13	13	1.65776e-4
130	130	0.536
131	131	0.538
132	132	0.591
133	133	0.213
134	134	0.746
135	135	0.107
136	136	0.00446
137	137	0.246
138	138	0.842
139	139	0.0607
14	14	0.395
140	140	0.431
141	141	0.23
142	142	0.851
143	143	0.212
144	144	0.296
145	145	0.252
146	146	0.921
147	147	0.822
148	148	0.57
149	149	0.537
15	15	0.826
150	150	0.826
151	151	0.511
152	152	0.447
153	153	0.71
154	154	0.437
155	155	0.512
156	156	0.0375
157	157	0.105
158	158	0.149
159	159	0.295
16	16	0.946
160	160	0.483
161	161	0.486
162	162	0.827
163	163	0.22
164	164	0.0188
165	165	0.784
166	166	0.0759
167	167	0.218
168	168	0.235
169	169	0.428
17	17	0.597
18	18	0.153
19	19	0.839
2	2	0.422
20	20	0.139
21	21	0.432
22	22	0.87
23	23	0.00365
24	24	0.571
25	25	0.36
26	26	0.977
27	27	0.74
28	28	0.844
29	29	0.0229
3	3	0.524
30	30	0.481
31	31	0.476
32	32	0.0743
33	33	0.189
34	34	0.192
35	35	0.75
36	36	0.172
37	37	0.653
38	38	0.815
39	39	0.818
4	4	0.242
40	40	0.0155
41	41	0.0746
42	42	0.915
43	43	0.312
44	44	0.0503
45	45	0.163
46	46	0.551
47	47	0.516
48	48	0.552
49	49	0.2
5	5	0.316
50	50	0.902
51	51	0.473
52	52	0.234
53	53	0.0665
54	54	0.364
55	55	0.0217
56	56	0.972
57	57	0.822
58	58	0.909
59	59	0.793
6	6	0.739
60	60	0.239
61	61	0.0643
62	62	0.886
63	63	0.615
64	64	0.759
65	65	0.371
66	66	0.53
67	67	0.855
68	68	0.565
69	69	0.942
7	7	0.0342
70	70	0.11
71	71	0.0551
72	72	0.795
73	73	0.562
74	74	0.0611
75	75	0.207
76	76	0.31
77	77	0.711
78	78	0.217
79	79	0.868
8	8	0.147
80	80	0.0355
81	81	0.328
82	82	0.1
83	83	0.981
84	84	0.295
85	85	0.0233
86	86	0.813
87	87	0.00797
88	88	0.8
89	89	0.703
9	9	0.596
90	90	0.0195
91	91	0.0184
92	92	0.0576
93	93	0.32
94	94	0.391
95	95	0.0429
96	96	0.46
97	97	0.836
98	98	0.731
99	99	0.359

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13500

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011132 human Hep-2 cells mock treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001737 (larynx)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000072 (segment of respiratory tract)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
0001557 (upper respiratory tract)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0104978 (HEp-2 cell sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011132 (human Hep-2 cells mock treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001737,UBERON:0000926,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0000077,UBERON:0000062,UBERON:0004120,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0000072,UBERON:0003104,UBERON:0001048,UBERON:0000925,UBERON:0006598,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0000065,UBERON:0001004,UBERON:0007026,UBERON:0001041,UBERON:0001557,UBERON:0009142,UBERON:0008947,UBERON:0003258,UBERON:0006595,UBERON:0006603
+|DRA_sample_Accession=CAGE@SAMD00005404
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0000004,CL:0000255
+|accession_numbers=CAGE;DRX007783;DRR008655;DRZ000080;DRZ001465;DRZ011430;DRZ012815
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001737,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000072,UBERON:0010317,UBERON:0000065,UBERON:0001004,UBERON:0001557
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000343,FF:0000350,FF:0104978,FF:0100297,FF:0101120,FF:0011132
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.72!61.87!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.54!33.72!ELF3;;chr2:238592039..238592054,+!p4@LRRFIP1!1.52!31.86!LRRFIP1;;chr5:134369905..134369972,-!p1@PITX1!1.50!46.87!PITX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.49!30.18!TFAP2A;;chr6:126240380..126240430,+!p2@NCOA7!1.48!73.00!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.44!43.66!TFAP2A;;chr6:1312325..1312340,+!p1@FOXQ1!1.42!40.63!FOXQ1;;chr5:170736243..170736279,+!p1@TLX3!1.28!18.21!TLX3;;chr5:134369879..134369898,-!p2@PITX1!1.28!18.04!PITX1;;chr6:126240442..126240459,+!p4@NCOA7!1.26!22.08!NCOA7;;chr1:201979703..201979721,+!p2@ELF3!1.24!16.18!ELF3;;chr22:19748231..19748317,+!p1@TBX1!1.19!14.67!TBX1;;chr12:54380036..54380091,+!p4@HOXC10!1.16!13.32!HOXC10;;chr6:126240463..126240489,+!p6@NCOA7!1.13!13.99!NCOA7;;chr17:46682321..46682362,-!p1@HOXB6!1.12!12.14!HOXB6;;chr6:126240356..126240379,+!p7@NCOA7!1.11!14.67!NCOA7;;chr6:1389789..1389821,+!p1@FOXF2!1.10!16.02!FOXF2;;chr18:55102598..55102623,+!p1@ONECUT2!1.09!11.30!ONECUT2;;chr7:101917447..101917479,+!p4@CUX1!1.08!10.96!CUX1;;chr18:55102628..55102646,+!p2@ONECUT2!1.07!10.62!ONECUT2;;chrX:131624056..131624069,-!p2@MBNL3!1.06!14.50!MBNL3;;chr20:6748325..6748352,+!p1@BMP2!1.05!14.84!BMP2;;chr12:54380404..54380433,+!p3@HOXC10!1.02!9.44!HOXC10;;chr9:100615499..100615519,+!p1@FOXE1!1.00!9.10!FOXE1;;chr3:69915385..69915438,+!p3@MITF!1.00!9.10!MITF;;chr12:54378923..54378966,+!p1@HOXC10!0.99!8.77!HOXC10;;chr7:27224842..27224872,-!p1@HOXA11!0.98!8.60!HOXA11;;chr1:44513995..44514031,+!p1@KLF17!0.97!8.43!KLF17;;chr13:73633131..73633149,+!p1@KLF5!0.96!90.02!KLF5;;chr6:10412392..10412409,-!p4@TFAP2A!0.96!9.44!TFAP2A;;chr6:10412576..10412599,-!p5@TFAP2A!0.93!7.59!TFAP2A;;chr17:46687959..46688007,-!p2@HOXB7!0.91!9.95!HOXB7;;chr12:54379029..54379057,+!p2@HOXC10!0.91!7.08!HOXC10;;chr11:34663913..34663945,+!p6@EHF!0.90!6.91!EHF;;chr5:170736216..170736238,+!p2@TLX3!0.89!6.74!TLX3;;chr12:54332608..54332636,+!p1@HOXC13!0.88!6.57!HOXC13;;chr2:178129853..178129860,-!p14@NFE2L2!0.87!6.41!NFE2L2;;chr7:101917407..101917443,+!p3@CUX1!0.87!6.41!CUX1;;chr7:27239703..27239715,-!p1@HOXA13!0.87!6.41!HOXA13;;chr6:31126291..31126399,+!p1@TCF19!0.86!63.39!TCF19;;chr2:172967621..172967637,-!p1@DLX2!0.86!17.70!DLX2;;chr5:321810..321877,+!p1@AHRR!0.84!19.89!AHRR;;chr16:29818199..29818216,+!p11@MAZ!0.84!10.12!MAZ;;chr3:69915369..69915381,+!p4@MITF!0.84!5.90!MITF;;chr12:3068544..3068597,+!p1@TEAD4!0.83!37.26!TEAD4;;chr10:51572408..51572454,+!p3@NCOA4!0.83!36.25!NCOA4;;chr2:45236540..45236577,-!p1@SIX2!0.83!5.73!SIX2;;chr1:151804244..151804310,-!p1@RORC!0.83!5.73!RORC;;chr10:104155659..104155676,+!p4@NFKB2!0.82!7.08!NFKB2;;chr8:55370487..55370503,+!p1@SOX17!0.82!5.56!SOX17;;chr20:42295745..42295765,+!p1@MYBL2!0.81!95.59!MYBL2;;chrX:131623044..131623089,-!p1@MBNL3!0.79!22.93!MBNL3;;chr6:1389989..1390019,+!p2@FOXF2!0.79!5.23!FOXF2;;chr17:46806067..46806097,-!p1@HOXB13!0.79!5.23!HOXB13;;chr17:17726907..17726958,-!p2@SREBF1!0.78!33.55!SREBF1;;chr21:38071430..38071456,+!p1@SIM2!0.78!5.06!SIM2;;chr12:80084737..80084763,-!p3@PAWR!0.77!20.06!PAWR;;chr10:28034739..28034756,-!p1@MKX!0.76!4.72!MKX;;chr6:10415263..10415274,-!p8@TFAP2A!0.76!4.72!TFAP2A;;chr7:101917482..101917507,+!p6@CUX1!0.76!4.72!CUX1;;chr17:46688334..46688385,-!p1@HOXB7!0.74!6.74!HOXB7;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.74!4.55!SEBOX;;chr1:45805872..45805900,+!p2@TOE1!0.73!11.46!TOE1;;chr12:54379477..54379498,+!p5@HOXC5!0.73!4.38!HOXC5;;chr8:128748308..128748324,+!p2@MYC!0.72!133.86!MYC;;chr1:8934931..8934947,-!p4@ENO1!0.72!15.51!ENO1;;chr22:42229210..42229229,+!p3@SREBF2!0.72!10.79!SREBF2;;chr17:7492684..7492778,-!p2@SOX15!0.72!9.78!SOX15;;chr17:48072574..48072597,-!p1@DLX3!0.72!4.21!DLX3;;chr16:29818160..29818188,+!p6@MAZ!0.71!21.41!MAZ;;chr8:67525443..67525459,-!p2@MYBL1!0.71!6.41!MYBL1;;chr3:138665937..138665968,-!p1@FOXL2!0.70!4.05!FOXL2;;chr1:8938709..8938720,-!p3@ENO1!0.69!218.65!ENO1;;chr20:42295713..42295738,+!p2@MYBL2!0.69!26.13!MYBL2;;chr3:138665969..138665993,-!p2@FOXL2!0.69!3.88!FOXL2;;chr1:23885981..23886002,-!p1@ID3!0.68!774.31!ID3;;chr12:2986275..2986363,-!p1@FOXM1!0.68!43.83!FOXM1;;chrX:131623982..131624011,-!p6@MBNL3!0.68!5.90!MBNL3;;chr17:41277372..41277418,-!p1@BRCA1!0.67!15.17!BRCA1;;chr5:134369643..134369675,-!p4@PITX1!0.67!3.71!PITX1;;chr3:12330560..12330579,+!p1@PPARG!0.66!4.21!PPARG;;chr12:54379136..54379150,+!p4@HOXC5!0.66!3.54!HOXC5;;chr12:54393880..54393962,+!p1@HOXC9!0.66!3.54!HOXC9;;chr13:100623375..100623425,-!p1@ZIC5!0.66!3.54!ZIC5;;chrX:131623026..131623039,-!p5@MBNL3!0.66!3.54!MBNL3;;chr3:128206762..128206781,-!p2@GATA2!0.65!25.29!GATA2;;chr2:178128149..178128198,-!p2@NFE2L2!0.65!21.58!NFE2L2;;chr1:935398..935465,-!p2@HES4!0.65!7.92!HES4;;chr16:54964740..54964789,+!p1@IRX5!0.64!5.23!IRX5;;chr15:67418119..67418162,+!p5@SMAD3!0.64!3.88!SMAD3;;chr11:3400340..3400422,-!p1@ZNF195!0.63!60.52!ZNF195;;chr2:46524897..46524911,+!p2@EPAS1!0.62!10.12!EPAS1;;chr15:96875657..96875760,+!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+|ffid_belonging_in_development=UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0101120
 |fonse_cell_line_closure=FF:0101120
@@ Line 35: / Line 41: @@
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@@ Line 43: / Line 60: @@
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 |sample_cell_line=Hep-2
@@ Line 79: / Line 100: @@
 |top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.72158721212;ESRRA:1.64770404203;E2F1..5:1.6231079105;HES1:1.60465568367;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.4666976892;FOXM1:1.40000279301;FOXQ1:1.2803589274;HIF1A:1.14550770919;ELK1,4_GABP{A,B1}:1.14324044337;PPARG:1.11853845804;NR5A1,2:1.06398333502;YY1:1.04179768819;NRF1:1.03127080121;NKX3-1:0.987503409874;bHLH_family:0.899521895975;MYB:0.832352490277;ZNF143:0.769161220287;NR6A1:0.741204774723;NFY{A,B,C}:0.715007066284;HNF4A_NR2F1,2:0.685350098374;FOXD3:0.682461588955;PAX1,9:0.677629225466;NKX3-2:0.67198622423;ZEB1:0.609706490827;PAX5:0.58538706244;TEAD1:0.572223940041;SNAI1..3:0.558806147909;HOX{A6,A7,B6,B7}:0.529537993417;FOXN1:0.507103475971;PAX8:0.505070468551;NFE2L1:0.500729582717;POU1F1:0.498833748448;GCM1,2:0.48308378261;EP300:0.475456893928;IRF7:0.451218548593;IKZF1:0.436853830732;ZNF148:0.432463598477;RXR{A,B,G}:0.419800336568;UFEwm:0.413664035448;TFDP1:0.409764921424;TBX4,5:0.36603869625;MYOD1:0.34195343743;GFI1:0.3214797642;HOXA9_MEIS1:0.309450353056;HOX{A5,B5}:0.282887844269;VSX1,2:0.226403854016;MYBL2:0.201160492565;GZF1:0.17676180696;ARID5B:0.149121627065;PAX3,7:0.133821525918;TEF:0.125740094894;GTF2A1,2:0.121121963199;ALX4:0.114347861247;TP53:0.109475884856;FOX{F1,F2,J1}:0.106638079159;PAX2:0.092505751791;RFX2..5_RFXANK_RFXAP:0.0875660068712;POU3F1..4:0.0804101010078;IKZF2:0.0790318405093;CUX2:0.0777188225919;BREu{core}:0.0715336619395;ZBTB16:0.0715195210255;LHX3,4:0.07094965123;STAT5{A,B}:0.0606819831682;LEF1_TCF7_TCF7L1,2:0.0582436000946;CREB1:0.0554996628126;ZNF423:0.04127562751;ZNF384:0.0149091703743;BACH2:-0.00804698626685;HLF:-0.0143703050143;EN1,2:-0.0175935342145;RORA:-0.0276127095395;SOX{8,9,10}:-0.0288896399013;MTF1:-0.0291027144979;HNF1A:-0.0301488694553;NFE2:-0.0303455692713;GFI1B:-0.0339958245895;HBP1_HMGB_SSRP1_UBTF:-0.0413654643954;FOXL1:-0.05218401235;PDX1:-0.0527586519685;HAND1,2:-0.0552136691553;ATF5_CREB3:-0.0909915807234;HSF1,2:-0.0925963772937;CDX1,2,4:-0.100599218539;CEBPA,B_DDIT3:-0.100901341178;NKX6-1,2:-0.109218763469;PRRX1,2:-0.11060483645;ZBTB6:-0.130271941537;LMO2:-0.13313447538;PITX1..3:-0.136162374473;FOS_FOS{B,L1}_JUN{B,D}:-0.137789005661;NFE2L2:-0.139943299185;OCT4_SOX2{dimer}:-0.156892357022;EBF1:-0.159862035414;GLI1..3:-0.1599718316;HOX{A4,D4}:-0.1797843695;TLX1..3_NFIC{dimer}:-0.191653037135;MEF2{A,B,C,D}:-0.193637282835;AHR_ARNT_ARNT2:-0.21019885236;FOX{I1,J2}:-0.217378500881;PBX1:-0.233604441314;POU2F1..3:-0.235657559538;ONECUT1,2:-0.240464681901;ATF4:-0.263621475571;CDC5L:-0.265928030179;STAT2,4,6:-0.268316913432;NR3C1:-0.285330352679;ELF1,2,4:-0.28978970138;KLF4:-0.295102329225;TBP:-0.30359143113;HMGA1,2:-0.305170571661;ESR1:-0.308548278654;TFCP2:-0.315279617635;HIC1:-0.318748146112;ZFP161:-0.320624471194;NKX2-1,4:-0.330121589786;DBP:-0.349190914459;FOSL2:-0.351681880897;PAX6:-0.352610278698;NFKB1_REL_RELA:-0.368251878922;CRX:-0.379113015535;ADNP_IRX_SIX_ZHX:-0.385427002597;NKX2-2,8:-0.386396550929;IRF1,2:-0.394489158549;ATF6:-0.399176305371;NFIL3:-0.411763106796;FOXP3:-0.413904850227;SREBF1,2:-0.416371488417;TFAP2B:-0.433996640416;BPTF:-0.449394660475;POU5F1:-0.469617524483;TFAP2{A,C}:-0.470644953743;MAFB:-0.472274624886;ALX1:-0.475935294976;NR1H4:-0.483470919545;GTF2I:-0.485659311756;T:-0.493330944594;SOX2:-0.50631103722;PAX4:-0.506918806412;EVI1:-0.512839479923;NANOG:-0.514976199735;JUN:-0.516744069519;RFX1:-0.521804991624;SPIB:-0.523149305372;GATA6:-0.533754038078;POU6F1:-0.553388281332;RXRA_VDR{dimer}:-0.562996491786;REST:-0.593868285508;NHLH1,2:-0.612495326056;RBPJ:-0.617012253604;MED-1{core}:-0.647960642444;EGR1..3:-0.65015887607;MTE{core}:-0.659215766593;AR:-0.668726167;FOXP1:-0.669419781189;XCPE1{core}:-0.675989984875;SP1:-0.687105043177;RUNX1..3:-0.690877110722;SPI1:-0.70481261659;SOX17:-0.708369746885;NKX2-3_NKX2-5:-0.754128614509;ZIC1..3:-0.75427304067;GATA4:-0.769480809532;ETS1,2:-0.783669094335;TFAP4:-0.792150924916;SRF:-0.796592744111;TOPORS:-0.822689965334;MAZ:-0.825257657135;SOX5:-0.867304296391;ZNF238:-0.871366269017;NFATC1..3:-0.931528437328;AIRE:-0.932219757827;FOXA2:-0.932614203854;DMAP1_NCOR{1,2}_SMARC:-0.945564501435;RREB1:-0.97038737301;FOX{D1,D2}:-0.98239752463;STAT1,3:-0.985218330289;TAL1_TCF{3,4,12}:-1.01191565793;MYFfamily:-1.01425884517;NFIX:-1.06174033504;ATF2:-1.0736100824;SMAD1..7,9:-1.07479952663;FOXO1,3,4:-1.15727731142;PRDM1:-1.1657641501;HMX1:-1.21201132525;MZF1:-1.22397863905;XBP1:-1.26645395596;TGIF1:-1.28139503548;PATZ1:-1.28256567644;SPZ1:-1.3160255846;TLX2:-1.33128001744;NANOG{mouse}:-1.63204599418
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11899-125E9;search_select_hide=table117:FF:11899-125E9
 }}

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FF:11899-125E9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:27, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0