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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
|DRA_sample_Accession=CAGE@SAMD00004842
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0002092,CL:0002540
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004842
|accession_numbers=CAGE;DRX008351;DRR009223;DRZ000648;DRZ002033;DRZ011998;DRZ013383
|accession_numbers_RNASeq=sRNA-Seq;DRX037016;DRR041382;DRZ007024
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002092,CL:0002540
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000097
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr7:19157248..19157268,-!p1@TWIST1!1.94!227.11!TWIST1;;chr14:61116183..61116208,-!p1@SIX1!1.66!162.56!SIX1;;chr12:66218255..66218304,+!p3@HMGA2!1.57!94.91!HMGA2;;chr6:34204921..34204939,+!p3@HMGA1!1.50!873.73!HMGA1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.46!27.52!HOXC5;;chr7:27205136..27205164,-!p1@HOXA9!1.45!27.01!HOXA9;;chr5:134369905..134369972,-!p1@PITX1!1.35!32.15!PITX1;;chr7:96654133..96654150,-!p1@DLX5!1.32!19.80!DLX5;;chr6:45296048..45296082,+!p1@RUNX2!1.30!21.61!RUNX2;;chr1:170633348..170633399,+!p2@PRRX1!1.27!24.18!PRRX1;;chr1:170632285..170632309,+!p1@PRRX1!1.27!20.06!PRRX1;;chr11:46299199..46299233,+!p1@CREB3L1!1.26!87.19!CREB3L1;;chr17:59477233..59477263,+!p1@TBX2!1.26!52.98!TBX2;;chr7:27213893..27213954,-!p1@HOXA10!1.25!16.72!HOXA10;;chr12:54380404..54380433,+!p3@HOXC10!1.24!16.46!HOXC10;;chr11:65686802..65686818,+!p6@DRAP1!1.21!26.24!DRAP1;;chr12:66218212..66218244,+!p5@HMGA2!1.19!21.09!HMGA2;;chr16:86600426..86600441,+!p1@FOXC2!1.18!34.72!FOXC2;;chr12:54379029..54379057,+!p2@HOXC10!1.18!14.15!HOXC10;;chr7:27224795..27224840,-!p2@HOXA11!1.17!13.63!HOXA11;;chr7:27224842..27224872,-!p1@HOXA11!1.17!13.63!HOXA11;;chr12:66218598..66218645,+!p2@HMGA2!1.16!62.24!HMGA2;;chr12:66218183..66218209,+!p4@HMGA2!1.13!23.92!HMGA2;;chr9:132427972..132428056,+!p1@PRRX2!1.12!15.95!PRRX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.11!20.06!CREB3L1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.11!12.86!GLIS1;;chr4:174451370..174451387,-!p1@HAND2!1.07!10.80!HAND2;;chr12:54380036..54380091,+!p4@HOXC10!1.05!10.29!HOXC10;;chr16:54320101..54320125,-!p4@IRX3!1.03!13.89!IRX3;;chr12:54378923..54378966,+!p1@HOXC10!1.03!9.77!HOXC10;;chr8:49833948..49833973,-!p2@SNAI2!1.02!60.70!SNAI2;;chr12:53614115..53614154,-!p1@RARG!1.02!50.93!RARG;;chr11:65686732..65686756,+!p2@DRAP1!1.02!40.38!DRAP1;;chr7:27196217..27196246,-!p2@HOXA7!1.01!9.26!HOXA7;;chr6:34204672..34204692,+!p1@HMGA1!1.00!1034.23!HMGA1;;chr7:27205106..27205134,-!p2@HOXA9!1.00!9.00!HOXA9;;chr11:65687362..65687436,+!p3@DRAP1!0.98!39.87!DRAP1;;chr12:54393880..54393962,+!p1@HOXC9!0.98!8.49!HOXC9;;chr2:200322654..200322707,-!p2@SATB2!0.95!11.83!SATB2;;chr9:132427883..132427951,+!p2@PRRX2!0.95!7.97!PRRX2;;chr11:65686952..65686975,+!p5@DRAP1!0.94!43.73!DRAP1;;chr7:19157043..19157088,-!p2@TWIST1!0.93!19.55!TWIST1;;chr17:59477197..59477212,+!p2@TBX2!0.93!13.37!TBX2;;chr12:66218378..66218401,+!p6@HMGA2!0.93!11.83!HMGA2;;chr5:134369879..134369898,-!p2@PITX1!0.93!7.46!PITX1;;chr7:27192185..27192209,-!p1@HOXA3!0.93!7.46!HOXA3;;chr7:96654026..96654061,-!p2@DLX5!0.93!7.46!DLX5;;chr12:66218836..66218888,+!p1@HMGA2!0.91!69.70!HMGA2;;chr2:5832508..5832524,+!p1@SOX11!0.91!7.20!SOX11;;chr2:85981107..85981120,+!p3@ATOH8!0.91!7.20!ATOH8;;chr8:49833978..49833996,-!p1@SNAI2!0.90!150.21!SNAI2;;chr1:170632959..170632987,+!p4@PRRX1!0.90!7.72!PRRX1;;chr16:54320617..54320643,-!p3@IRX3!0.88!8.49!IRX3;;chr4:174450089..174450153,-!p2@HAND2!0.87!6.43!HAND2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.87!6.43!HOXC5;;chr14:61116168..61116180,-!p2@SIX1!0.86!7.20!SIX1;;chr19:47523058..47523114,+!p1@NPAS1!0.86!6.17!NPAS1;;chr17:59477275..59477286,+!p3@TBX2!0.84!7.97!TBX2;;chrY:21906594..21906622,-!p1@KDM5D!0.84!5.92!KDM5D;;chr5:92918919..92918942,+!p1@NR2F1!0.83!27.52!NR2F1;;chr2:85981222..85981259,+!p2@ATOH8!0.83!9.77!ATOH8;;chr2:85980951..85981004,+!p1@ATOH8!0.82!9.52!ATOH8;;chr2:176994408..176994492,+!p1@HOXD8!0.82!5.66!HOXD8;;chr3:157823517..157823562,-!p1@SHOX2!0.81!5.92!SHOX2;;chr4:299227..299272,-!p1@ZNF732!0.81!5.40!ZNF732;;chr20:30193083..30193098,+!p1@ID1!0.80!465.55!ID1;;chr1:23885981..23886002,-!p1@ID3!0.79!989.99!ID3;;chr6:31126291..31126399,+!p1@TCF19!0.79!53.50!TCF19;;chr16:54964740..54964789,+!p1@IRX5!0.79!7.72!IRX5;;chr20:50721803..50721857,-!p2@ZFP64!0.78!8.23!ZFP64;;chr16:54320646..54320672,-!p2@IRX3!0.77!7.72!IRX3;;chr16:54320158..54320200,-!p5@IRX3!0.77!7.20!IRX3;;chr6:85473156..85473210,-!p2@TBX18!0.77!6.17!TBX18;;chr12:54394309..54394336,+!p2@HOXC9!0.77!4.89!HOXC9;;chr2:85981027..85981047,+!p8@ATOH8!0.77!4.89!ATOH8;;chr2:85981073..85981091,+!p5@ATOH8!0.75!4.63!ATOH8;;chr6:134210243..134210257,+!p1@TCF21!0.75!4.63!TCF21;;chr12:54378984..54378996,+!p7@HOXC10!0.75!4.63!HOXC10;;chr5:176738887..176738934,-!p1@MXD3!0.74!33.18!MXD3;;chr5:321810..321877,+!p1@AHRR!0.74!15.69!AHRR;;chr16:54320675..54320715,-!p1@IRX3!0.74!10.29!IRX3;;chr11:65687222..65687240,+!p7@DRAP1!0.74!5.92!DRAP1;;chr2:239756739..239756755,+!p2@TWIST2!0.73!7.97!TWIST2;;chr19:13134772..13134822,+!p2@NFIX!0.73!6.69!NFIX;;chr11:65687243..65687276,+!p8@DRAP1!0.73!6.17!DRAP1;;chr1:170633262..170633285,+!p3@PRRX1!0.73!5.14!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!0.73!4.37!PRRX1;;chr1:25291475..25291511,-!p2@RUNX3!0.73!4.37!RUNX3;;chr4:109089095..109089144,-!p6@LEF1!0.73!4.37!LEF1;;chr9:77112244..77112262,+!p1@RORB!0.72!4.89!RORB;;chr19:44037546..44037594,+!p1@ZNF575!0.71!9.26!ZNF575;;chr15:57511609..57511651,+!p2@TCF12!0.70!7.20!TCF12;;chr11:65667846..65667868,-!p1@FOSL1!0.69!117.29!FOSL1;;chr19:13134457..13134462,+!p5@NFIX!0.69!7.46!NFIX;;chr12:54447599..54447630,+!p3@HOXC4!0.69!4.89!HOXC4;;chr12:54380112..54380126,+!p5@HOXC10!0.69!3.86!HOXC10;;chr12:54402745..54402788,+!p1@HOXC8!0.69!3.86!HOXC8;;chr19:46801639..46801699,+!p1@HIF3A!0.69!3.86!HIF3A;;chr2:172967242..172967265,-!p2@DLX2!0.69!3.86!DLX2;;chr11:65687158..65687216,+!p4@DRAP1!0.68!24.95!DRAP1;;chr19:45260775..45260838,+!p5@BCL3!0.68!5.14!BCL3;;chr12:2986275..2986363,-!p1@FOXM1!0.67!42.18!FOXM1;;chr11:47279504..47279563,+!p1@NR1H3!0.67!9.26!NR1H3;;chr19:38720294..38720348,-!p1@DPF1!0.66!4.63!DPF1;;chr2:45236540..45236577,-!p1@SIX2!0.66!3.60!SIX2;;chr7:27196267..27196311,-!p1@HOXA7!0.66!3.60!HOXA7;;chr11:65667884..65667895,-!p2@FOSL1!0.65!15.43!FOSL1;;chr2:19558373..19558392,-!p1@OSR1!0.65!10.55!OSR1;;chr20:42295745..42295765,+!p1@MYBL2!0.64!64.82!MYBL2;;chr12:2986206..2986258,-!p2@FOXM1!0.64!23.66!FOXM1;;chr20:42295713..42295738,+!p2@MYBL2!0.64!23.15!MYBL2;;chr5:72744594..72744609,-!p1@FOXD1!0.64!17.75!FOXD1;;chr19:9609272..9609297,-!p1@ZNF560!0.64!3.34!ZNF560;;chr1:40105299..40105326,-!p1@HEYL!0.64!3.34!HEYL;;chr2:172949484..172949522,+!p1@DLX1!0.64!3.34!DLX1;;chr16:86600870..86600921,+!p2@FOXC2!0.64!3.34!FOXC2;;chr7:44143925..44143970,+!p1@AEBP1!0.63!85.91!AEBP1;;chr2:239756671..239756732,+!p1@TWIST2!0.63!12.09!TWIST2;;chr3:12329397..12329433,+!p2@PPARG!0.63!8.23!PPARG;;chr6:34204973..34204990,+!p4@HMGA1!0.62!50.93!HMGA1;;chr12:7079780..7079791,-!p2@PHB2!0.62!19.55!PHB2;;chr11:63684602..63684664,-!p1@RCOR2!0.62!6.94!RCOR2;;chr1:247171347..247171366,-!p2@ZNF695!0.62!6.43!ZNF695;;chr12:66218573..66218596,+!p7@HMGA2!0.61!4.89!HMGA2;;chr2:85980919..85980942,+!p4@ATOH8!0.61!3.34!ATOH8;;chr16:86600458..86600461,+!p3@FOXC2!0.61!3.09!FOXC2;;chr17:41622731..41622764,-!p5@ETV4!0.61!3.09!ETV4;;chr7:27183263..27183284,-!p2@HOXA5!0.61!3.09!HOXA5;;chr12:54394059..54394088,+!p3@HOXC9!0.61!3.09!HOXC9;;chr12:54410948..54410992,+!p3@HOXC5!0.61!3.09!HOXC5;;chr12:66218420..66218439,+!p12@HMGA2!0.61!3.09!HMGA2;;chr11:65686855..65686946,+!p1@DRAP1!0.59!267.75!DRAP1;;chr14:75988771..75988826,+!p1@BATF!0.59!4.12!BATF;;chr8:77593474..77593612,+!p1@ZFHX4!0.58!14.15!ZFHX4;;chr7:27183291..27183324,-!p1@HOXA5!0.58!2.83!HOXA5;;chr7:27212501..27212513,-!p5@HOXA10!0.58!2.83!HOXA10;;chr2:45236579..45236596,-!p2@SIX2!0.58!2.83!SIX2;;chr2:85981008..85981025,+!p7@ATOH8!0.58!2.83!ATOH8;;chr17:59477403..59477414,+!p4@TBX2!0.58!2.83!TBX2;;chr17:41623692..41623715,-!p1@ETV4!0.57!13.89!ETV4;;chr2:121493425..121493474,+!p1@GLI2!0.57!6.94!GLI2;;chr17:41623009..41623053,-!p4@ETV4!0.57!4.89!ETV4;;chr1:8938766..8938774,-!p2@ENO1!0.56!226.86!ENO1;;chr15:96874012..96874042,+!p2@NR2F2!0.56!29.58!NR2F2;;chr19:1592714..1592762,-!p1@MBD3!0.56!24.69!MBD3;;chr2:172967621..172967637,-!p1@DLX2!0.56!8.23!DLX2;;chr5:158526917..158526932,-!p1@EBF1!0.56!7.72!EBF1;;chr6:1610293..1610310,+!p1@FOXC1!0.56!4.89!FOXC1;;chr12:66218443..66218461,+!p8@HMGA2!0.56!3.60!HMGA2;;chr17:47492252..47492265,-!p2@PHB!0.55!12.86!PHB;;chr7:42276787..42276815,-!p1@GLI3!0.55!7.97!GLI3;;chr2:214015111..214015179,-!p1@IKZF2!0.55!5.14!IKZF2;;chr12:66218152..66218174,+!p10@HMGA2!0.55!2.83!HMGA2;;chr12:54394416..54394467,+!p5@HOXC9!0.55!2.57!HOXC9;;chr1:119530706..119530736,-!p3@TBX15!0.55!2.57!TBX15;;chr1:170632439..170632465,+!p11@PRRX1!0.55!2.57!PRRX1;;chr1:170632477..170632506,+!p6@PRRX1!0.55!2.57!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.55!2.57!PRRX1;;chr1:170633245..170633256,+!p14@PRRX1!0.55!2.57!PRRX1;;chr15:67391010..67391046,+!p13@SMAD3!0.55!2.57!SMAD3;;chr16:54320280..54320291,-!p9@IRX3!0.55!2.57!IRX3;;chr16:54320302..54320317,-!p10@IRX3!0.55!2.57!IRX3;;chr2:85980768..85980783,+!p10@ATOH8!0.55!2.57!ATOH8;;chr15:67357924..67357952,+!p2@SMAD3!0.54!20.58!SMAD3;;chr1:8484314..8484348,-!p7@RERE!0.54!7.97!RERE;;chr3:12329358..12329393,+!p3@PPARG!0.54!7.20!PPARG;;chr2:169312600..169312606,+!p2@CERS6!0.54!4.37!CERS6;;chr8:60031809..60031835,-!p4@TOX!0.54!3.34!TOX;;chr1:8938709..8938720,-!p3@ENO1!0.53!147.89!ENO1;;chr1:8483878..8483907,-!p4@RERE!0.53!11.32!RERE;;chr2:200323414..200323455,-!p1@SATB2!0.53!5.92!SATB2;;chr2:71127699..71127744,+!p1@VAX2!0.53!5.66!VAX2;;chr6:85474299..85474324,-!p1@TBX18!0.53!4.89!TBX18;;chr11:113930291..113930339,+!p2@ZBTB16!0.53!4.37!ZBTB16;;chr12:54447637..54447659,+!p4@HOXC4!0.52!2.31!HOXC4;;chr5:2751762..2751784,-!p1@IRX2!0.52!2.31!IRX2;;chr7:27196196..27196210,-!p5@HOXA7!0.52!2.31!HOXA7;;chr7:27224911..27224922,-!p5@HOXA11!0.52!2.31!HOXA11;;chr16:54319010..54319041,-!p8@IRX3!0.52!2.31!IRX3;;chr2:96012397..96012417,+!p3@KCNIP3!0.52!2.31!KCNIP3;;chr4:57522598..57522664,-!p3@HOPX!0.52!2.31!HOPX;;chr1:8938736..8938756,-!p1@ENO1!0.51!3212.26!ENO1;;chr19:3366570..3366619,+!p1@NFIC!0.51!93.88!NFIC;;chr19:49865646..49865718,-!p1@TEAD2!0.51!24.69!TEAD2;;chr11:61520075..61520136,+!p1@C11orf9!0.51!5.66!C11orf9;;chrX:66763856..66763896,+!p1@AR!0.51!3.60!AR;;chr7:44143978..44143989,+!p2@AEBP1!0.50!4.63!AEBP1;;chrX:66763815..66763854,+!p2@AR!0.50!3.09!AR;;c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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002092;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002540;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 35: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mesenchymal%2520Stem%2520Cells%2520-%2520bone%2520marrow%252c%2520donor1.CNhs11344.11536-120A6.hg38.nobarcode.ctss.bed.gz
|id=FF:11536-120A6
|id=FF:11536-120A6
|is_a=EFO:0002091;;FF:0000097
|is_a=EFO:0002091;;FF:0000097
|is_obsolete=
|is_obsolete=
|library_id=CNhs11344
|library_id_phase_based=2:CNhs11344
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11536
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.CAGATC.11536
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11536
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.CAGATC.11536
|name=Mesenchymal Stem Cells - bone marrow, donor1
|name=Mesenchymal Stem Cells - bone marrow, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 43: Line 65:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11344,LSID769,release014,COMPLETED
|profile_hcage=CNhs11344,LSID769,release014,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=SRhi10003,,,
|profile_srnaseq=SRhi10003,,,
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|rna_box=120
|rna_box=120
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|rna_catalog_number=SC7505
Line 57: Line 82:
|rna_tube_id=120A6
|rna_tube_id=120A6
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=SRhi10003.CAGATC
|sample_age=
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=N/A
|sample_cell_catalog=N/A
|sample_cell_line=
|sample_cell_line=
Line 79: Line 106:
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|top_motifs=HOX{A5,B5}:1.43077586755;GTF2A1,2:1.37732704542;GFI1:1.14514534438;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.10846462913;PDX1:1.08831681236;GZF1:1.07760054782;EBF1:1.05793421713;HES1:1.03506954799;ZNF238:1.01923231994;RXR{A,B,G}:1.00228689837;NFY{A,B,C}:0.845706202685;ATF6:0.839967795214;IKZF1:0.81998684714;EN1,2:0.747317659181;GFI1B:0.738027997891;GLI1..3:0.737675358977;E2F1..5:0.679425428186;PBX1:0.676533423938;NFE2L1:0.638827003879;LHX3,4:0.63124901192;PAX8:0.630656299008;NR3C1:0.589710604587;ESR1:0.558496841907;LEF1_TCF7_TCF7L1,2:0.549270274999;POU2F1..3:0.476311943967;KLF4:0.455754076586;ZNF148:0.44126158007;STAT5{A,B}:0.435617050448;TFAP4:0.432047730301;SOX17:0.430409209313;ZIC1..3:0.425335192695;ZNF423:0.423280950605;TFCP2:0.420911078922;NR5A1,2:0.416916832293;SRF:0.41470343856;CDC5L:0.412256665988;NR1H4:0.40597934365;XCPE1{core}:0.399168891631;RXRA_VDR{dimer}:0.386698279063;ZNF143:0.370471020499;HOX{A6,A7,B6,B7}:0.353386875375;TP53:0.349085170671;NKX2-3_NKX2-5:0.337574018173;TEAD1:0.333258217027;ZBTB6:0.330929944517;HBP1_HMGB_SSRP1_UBTF:0.309196296996;RREB1:0.307198751687;TAL1_TCF{3,4,12}:0.300713944981;FOXD3:0.283192386739;TLX1..3_NFIC{dimer}:0.280204649194;PAX5:0.279659260813;NR6A1:0.278329625909;CRX:0.273247302875;NFE2L2:0.271771579658;FOXL1:0.265509566534;MYB:0.259346103085;SOX{8,9,10}:0.248744074811;ESRRA:0.220123514711;HAND1,2:0.217964181596;PPARG:0.206270252735;TBP:0.199499840218;SPZ1:0.197704913473;TOPORS:0.197559490485;BACH2:0.170633623871;HNF4A_NR2F1,2:0.166240537269;NKX2-2,8:0.16492628406;ADNP_IRX_SIX_ZHX:0.161748333122;PRRX1,2:0.154858505201;TFDP1:0.150189412197;RUNX1..3:0.133124107997;ELK1,4_GABP{A,B1}:0.127622749724;POU6F1:0.12756836439;NANOG:0.126618753887;POU3F1..4:0.10804417916;YY1:0.0978594554374;HNF1A:0.0919324423848;HIC1:0.0767387165639;ONECUT1,2:0.0625855662439;FOSL2:0.0467821915744;GTF2I:0.0465524494969;UFEwm:0.0317172591623;FOS_FOS{B,L1}_JUN{B,D}:0.0223707294604;NRF1:0.00489335727312;STAT2,4,6:0.000916297210086;SP1:-0.0035105811441;TFAP2{A,C}:-0.00508615577844;NFE2:-0.0114922466967;RFX1:-0.0124985822702;MZF1:-0.0231671606792;HLF:-0.0325037497519;AIRE:-0.0458074353173;ZNF384:-0.0553232333979;FOXA2:-0.0780484948715;PRDM1:-0.100870266154;AR:-0.112168536692;TBX4,5:-0.117621647839;AHR_ARNT_ARNT2:-0.120457393272;bHLH_family:-0.126412307306;MAFB:-0.130485308031;JUN:-0.131310606314;NFATC1..3:-0.133772279904;REST:-0.141873949084;MTF1:-0.143689103904;MEF2{A,B,C,D}:-0.143985015877;NHLH1,2:-0.144575311017;PAX3,7:-0.154533991311;POU5F1:-0.155957678729;ALX4:-0.165561352058;PATZ1:-0.183775467796;HOX{A4,D4}:-0.193414723245;NANOG{mouse}:-0.21588413632;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.233158613188;GATA6:-0.23926524461;HSF1,2:-0.241088205639;CEBPA,B_DDIT3:-0.245537771212;DMAP1_NCOR{1,2}_SMARC:-0.247951013806;MTE{core}:-0.248047980705;MYBL2:-0.24839423211;HOXA9_MEIS1:-0.25444224005;RORA:-0.265396658539;NFIX:-0.285789895283;GATA4:-0.285956940464;FOXM1:-0.30961173635;TFAP2B:-0.31146918055;NKX6-1,2:-0.313708584622;BREu{core}:-0.313895719222;NFKB1_REL_RELA:-0.316958706681;POU1F1:-0.344198838664;OCT4_SOX2{dimer}:-0.344831336824;FOX{I1,J2}:-0.34896679774;PAX1,9:-0.355045091576;MAZ:-0.35711637916;EVI1:-0.358863477432;FOXQ1:-0.371496957117;ETS1,2:-0.372638915556;SOX5:-0.379604454459;ARID5B:-0.393440815067;SOX2:-0.393557739442;T:-0.403474227284;NKX3-2:-0.414474226806;RFX2..5_RFXANK_RFXAP:-0.436193084824;NFIL3:-0.442004230472;CUX2:-0.446586631008;XBP1:-0.456118419;ELF1,2,4:-0.461399895837;DBP:-0.472041111923;SPIB:-0.494535510561;TEF:-0.507947982891;STAT1,3:-0.525126840795;SNAI1..3:-0.559287692971;MED-1{core}:-0.561195788757;SPI1:-0.570686135811;EGR1..3:-0.575725902608;TGIF1:-0.590879789142;LMO2:-0.596420857037;PITX1..3:-0.62507181434;VSX1,2:-0.647454459842;MYFfamily:-0.647780246884;CREB1:-0.661425656773;SMAD1..7,9:-0.705031773465;HMX1:-0.754364390618;FOXP3:-0.754983387583;ZFP161:-0.757100960011;EP300:-0.763530732109;ATF5_CREB3:-0.770276377355;HMGA1,2:-0.773500374322;IKZF2:-0.78942486685;GCM1,2:-0.801633499062;IRF1,2:-0.80790969477;CDX1,2,4:-0.817874564622;FOXP1:-0.824694924454;ATF4:-0.834399418017;IRF7:-0.83800417458;MYOD1:-0.839778582183;NKX2-1,4:-0.859281673917;NKX3-1:-0.863052475066;ZEB1:-0.892423307893;PAX4:-0.903037360362;FOX{F1,F2,J1}:-0.904249243955;SREBF1,2:-0.916320584875;HIF1A:-0.919500453369;ALX1:-0.925193890735;PAX2:-0.959868223151;FOXO1,3,4:-0.962821836618;RBPJ:-0.984472541604;BPTF:-1.01345198082;PAX6:-1.10499138356;FOX{D1,D2}:-1.15300839932;ATF2:-1.16736391184;ZBTB16:-1.19615038696;FOXN1:-1.43543367687;TLX2:-1.58817015611
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11536-120A6;search_select_hide=table117:FF:11536-120A6
}}
}}

Latest revision as of 18:07, 4 June 2020

Name:Mesenchymal Stem Cells - bone marrow, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11344
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone marrow
dev stageNA
sexNA
ageNA
cell typemesenchymal stem cell
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC7505
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004842
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11344 CAGE DRX008351 DRR009223
Accession ID Hg19

Library idBAMCTSS
CNhs11344 DRZ000648 DRZ002033
Accession ID Hg38

Library idBAMCTSS
CNhs11344 DRZ011998 DRZ013383
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00004842
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.CAGATC sRNA-Seq DRX037016 DRR041382
Accession ID Hg19

Library idBAMCTSS
SRhi10003.CAGATC DRZ007024


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0916
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.183
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0994
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0994
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0693
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.384
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.131
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.127
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.18
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0484
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0348
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.597
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.633
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0994
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0578
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.307
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.223
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.477
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11344

Jaspar motifP-value
MA0002.20.471
MA0003.10.366
MA0004.10.574
MA0006.10.309
MA0007.10.017
MA0009.10.424
MA0014.10.899
MA0017.10.194
MA0018.20.0374
MA0019.10.449
MA0024.10.0107
MA0025.10.0758
MA0027.10.468
MA0028.10.31
MA0029.10.168
MA0030.19.05722e-4
MA0031.12.83655e-4
MA0035.20.84
MA0038.12.42735e-4
MA0039.20.456
MA0040.10.776
MA0041.10.44
MA0042.10.802
MA0043.18.73383e-4
MA0046.10.0805
MA0047.20.0934
MA0048.10.0508
MA0050.11.53536e-9
MA0051.19.1648e-6
MA0052.10.528
MA0055.10.00162
MA0057.10.243
MA0058.10.611
MA0059.10.214
MA0060.15.29872e-12
MA0061.10.882
MA0062.20.598
MA0065.20.135
MA0066.10.116
MA0067.10.00577
MA0068.10.425
MA0069.10.0869
MA0070.10.0145
MA0071.10.0888
MA0072.10.345
MA0073.10.809
MA0074.10.719
MA0076.10.985
MA0077.10.601
MA0078.10.735
MA0079.20.892
MA0080.23.85109e-6
MA0081.10.00875
MA0083.10.0087
MA0084.10.889
MA0087.10.914
MA0088.10.0288
MA0090.10.0913
MA0091.10.335
MA0092.10.558
MA0093.10.657
MA0099.20.00599
MA0100.10.542
MA0101.10.26
MA0102.21.49661e-6
MA0103.10.0429
MA0104.20.743
MA0105.10.377
MA0106.10.0897
MA0107.10.125
MA0108.20.0174
MA0111.10.394
MA0112.20.0144
MA0113.10.0422
MA0114.10.0624
MA0115.10.92
MA0116.10.135
MA0117.10.54
MA0119.10.161
MA0122.10.74
MA0124.10.01
MA0125.10.132
MA0131.10.785
MA0135.10.286
MA0136.19.23987e-6
MA0137.20.221
MA0138.20.349
MA0139.10.558
MA0140.10.337
MA0141.10.0503
MA0142.10.398
MA0143.10.75
MA0144.10.643
MA0145.10.325
MA0146.10.034
MA0147.10.564
MA0148.10.28
MA0149.10.381
MA0150.10.812
MA0152.10.371
MA0153.10.397
MA0154.10.178
MA0155.10.239
MA0156.10.0223
MA0157.10.0419
MA0159.10.811
MA0160.10.251
MA0162.10.212
MA0163.10.0379
MA0164.10.919
MA0258.10.23
MA0259.10.825



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11344

Novel motifP-value
10.506
100.802
1000.381
1010.664
1020.609
1030.414
1040.393
1050.205
1060.794
1070.0908
1080.915
1090.0123
110.0251
1100.0571
1110.602
1120.653
1130.661
1140.767
1150.395
1160.0321
1170.37
1180.771
1190.815
120.598
1200.188
1210.327
1220.636
1230.00605
1240.624
1250.894
1260.585
1270.638
1280.794
1290.856
130.205
1300.0074
1310.367
1320.26
1330.403
1340.0532
1350.917
1360.986
1370.0594
1380.175
1390.231
140.926
1400.677
1410.426
1420.203
1430.273
1440.756
1450.446
1460.0249
1470.281
1480.734
1490.435
150.913
1500.302
1510.637
1520.314
1530.178
1540.14
1550.65
1560.585
1570.747
1580.132
1590.493
160.314
1600.0178
1610.278
1620.444
1630.319
1640.807
1650.645
1660.826
1670.417
1680.737
1690.0745
170.459
180.241
190.0353
20.661
200.755
210.337
220.0778
230.92
240.659
250.921
260.0439
270.481
280.0981
290.552
30.353
300.159
310.471
320.00475
330.194
340.264
350.633
360.291
370.147
380.422
390.339
40.402
400.0278
410.544
420.556
430.35
440.357
450.473
460.0817
470.0756
480.0786
490.191
50.896
500.149
510.466
520.786
530.431
540.645
550.806
560.195
570.336
580.327
590.0287
60.625
600.66
610.503
620.421
630.113
640.117
650.0932
660.023
670.823
680.0762
690.0998
70.587
700.438
710.0634
720.625
730.0761
740.864
750.438
760.207
770.0719
780.965
790.858
80.0322
800.726
810.973
820.908
830.56
840.499
850.424
860.703
870.133
880.284
890.0649
90.416
900.126
910.173
920.685
930.61
940.486
950.113
960.556
970.771
980.658
992.84549e-5



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11344


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002092 (bone marrow cell)
0002540 (mesenchymal stem cell of the bone marrow)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000097 (human mesenchymal stem cell of bone marrow sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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