FF:11344-117G3: Difference between revisions

Latest revision as of 17:53, 4 June 2020

Name:	Endothelial Cells - Vein, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs11377
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	vein
dev stage	infant
sex	male
age	Neonatal
cell type	blood vessel endothelial cell
cell line	NA
company	Cell Applications
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	1643
catalog number	CA200-R10n
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004806

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11377		CAGE		DRX008235		DRR009107

Accession ID Hg19

Library id		BAM		CTSS
CNhs11377		DRZ000532		DRZ001917

Accession ID Hg38

Library id		BAM		CTSS
CNhs11377		DRZ011882		DRZ013267

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00004806

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10008.AGTCAA		sRNA-Seq		DRX037118		DRR041484

Accession ID Hg19

Library id		BAM		CTSS
SRhi10008.AGTCAA		DRZ007126

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.17
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0166
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	1.234
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.29
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.241
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.317
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.398
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.375
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.909
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0221
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.367
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.462
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11377

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.547
MA0003.1	MA0003.1	0.127
MA0004.1	MA0004.1	0.333
MA0006.1	MA0006.1	0.156
MA0007.1	MA0007.1	0.0124
MA0009.1	MA0009.1	0.969
MA0014.1	MA0014.1	0.992
MA0017.1	MA0017.1	0.105
MA0018.2	MA0018.2	0.00418
MA0019.1	MA0019.1	0.0795
MA0024.1	MA0024.1	0.213
MA0025.1	MA0025.1	0.481
MA0027.1	MA0027.1	0.954
MA0028.1	MA0028.1	0.102
MA0029.1	MA0029.1	0.319
MA0030.1	MA0030.1	0.914
MA0031.1	MA0031.1	0.34
MA0035.2	MA0035.2	9.86183e-4
MA0038.1	MA0038.1	0.284
MA0039.2	MA0039.2	0.677
MA0040.1	MA0040.1	0.406
MA0041.1	MA0041.1	0.287
MA0042.1	MA0042.1	0.663
MA0043.1	MA0043.1	7.45945e-5
MA0046.1	MA0046.1	0.174
MA0047.2	MA0047.2	0.245
MA0048.1	MA0048.1	0.481
MA0050.1	MA0050.1	8.26333e-5
MA0051.1	MA0051.1	0.0216
MA0052.1	MA0052.1	0.235
MA0055.1	MA0055.1	0.0737
MA0057.1	MA0057.1	0.364
MA0058.1	MA0058.1	0.321
MA0059.1	MA0059.1	0.0462
MA0060.1	MA0060.1	0.00204
MA0061.1	MA0061.1	0.606
MA0062.2	MA0062.2	0.0457
MA0065.2	MA0065.2	0.174
MA0066.1	MA0066.1	0.871
MA0067.1	MA0067.1	0.19
MA0068.1	MA0068.1	0.0494
MA0069.1	MA0069.1	0.417
MA0070.1	MA0070.1	0.426
MA0071.1	MA0071.1	0.331
MA0072.1	MA0072.1	0.481
MA0073.1	MA0073.1	0.19
MA0074.1	MA0074.1	0.811
MA0076.1	MA0076.1	0.00418
MA0077.1	MA0077.1	7.9121e-6
MA0078.1	MA0078.1	0.00482
MA0079.2	MA0079.2	0.839
MA0080.2	MA0080.2	1.97242e-4
MA0081.1	MA0081.1	0.0586
MA0083.1	MA0083.1	0.0344
MA0084.1	MA0084.1	0.312
MA0087.1	MA0087.1	0.24
MA0088.1	MA0088.1	0.25
MA0090.1	MA0090.1	0.375
MA0091.1	MA0091.1	0.717
MA0092.1	MA0092.1	0.542
MA0093.1	MA0093.1	0.309
MA0099.2	MA0099.2	1.98138e-20
MA0100.1	MA0100.1	0.214
MA0101.1	MA0101.1	0.855
MA0102.2	MA0102.2	6.31832e-4
MA0103.1	MA0103.1	0.378
MA0104.2	MA0104.2	0.488
MA0105.1	MA0105.1	0.819
MA0106.1	MA0106.1	0.00297
MA0107.1	MA0107.1	0.811
MA0108.2	MA0108.2	5.42254e-5
MA0111.1	MA0111.1	0.811
MA0112.2	MA0112.2	0.16
MA0113.1	MA0113.1	0.17
MA0114.1	MA0114.1	0.643
MA0115.1	MA0115.1	0.436
MA0116.1	MA0116.1	0.279
MA0117.1	MA0117.1	0.536
MA0119.1	MA0119.1	0.0931
MA0122.1	MA0122.1	0.185
MA0124.1	MA0124.1	0.236
MA0125.1	MA0125.1	0.577
MA0131.1	MA0131.1	0.332
MA0135.1	MA0135.1	0.325
MA0136.1	MA0136.1	0.0322
MA0137.2	MA0137.2	0.182
MA0138.2	MA0138.2	0.649
MA0139.1	MA0139.1	0.222
MA0140.1	MA0140.1	1.50826e-4
MA0141.1	MA0141.1	0.0476
MA0142.1	MA0142.1	0.193
MA0143.1	MA0143.1	0.418
MA0144.1	MA0144.1	0.911
MA0145.1	MA0145.1	0.0556
MA0146.1	MA0146.1	0.68
MA0147.1	MA0147.1	0.157
MA0148.1	MA0148.1	0.0965
MA0149.1	MA0149.1	0.0429
MA0150.1	MA0150.1	0.00557
MA0152.1	MA0152.1	0.568
MA0153.1	MA0153.1	0.329
MA0154.1	MA0154.1	0.22
MA0155.1	MA0155.1	0.0404
MA0156.1	MA0156.1	0.0343
MA0157.1	MA0157.1	0.816
MA0159.1	MA0159.1	0.452
MA0160.1	MA0160.1	0.141
MA0162.1	MA0162.1	0.0571
MA0163.1	MA0163.1	0.215
MA0164.1	MA0164.1	0.396
MA0258.1	MA0258.1	0.453
MA0259.1	MA0259.1	0.985

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11377

Novel motif	Logo	P-value
1	1	0.5
10	10	0.265
100	100	0.929
101	101	0.368
102	102	0.728
103	103	0.967
104	104	0.747
105	105	0.465
106	106	0.0558
107	107	0.0721
108	108	0.83
109	109	0.171
11	11	0.0791
110	110	0.0327
111	111	0.538
112	112	0.913
113	113	0.317
114	114	0.258
115	115	0.613
116	116	0.679
117	117	0.51
118	118	0.721
119	119	0.356
12	12	0.0653
120	120	0.00551
121	121	0.641
122	122	0.283
123	123	0.104
124	124	0.915
125	125	0.575
126	126	0.533
127	127	0.484
128	128	0.551
129	129	0.106
13	13	0.305
130	130	0.302
131	131	0.394
132	132	0.822
133	133	0.356
134	134	0.761
135	135	0.0303
136	136	0.359
137	137	0.232
138	138	0.696
139	139	0.458
14	14	0.884
140	140	0.248
141	141	0.132
142	142	0.659
143	143	0.0314
144	144	0.41
145	145	0.0308
146	146	0.0496
147	147	0.15
148	148	0.246
149	149	0.0499
15	15	0.253
150	150	0.125
151	151	0.824
152	152	0.0756
153	153	0.536
154	154	0.418
155	155	0.919
156	156	0.0505
157	157	0.473
158	158	0.551
159	159	0.698
16	16	0.861
160	160	0.0297
161	161	0.634
162	162	0.632
163	163	0.571
164	164	0.739
165	165	0.724
166	166	0.144
167	167	0.0519
168	168	0.996
169	169	0.0394
17	17	0.144
18	18	0.325
19	19	0.239
2	2	0.701
20	20	0.978
21	21	0.67
22	22	0.285
23	23	0.111
24	24	0.211
25	25	0.72
26	26	0.394
27	27	0.384
28	28	0.278
29	29	0.95
3	3	0.755
30	30	0.474
31	31	0.752
32	32	0.468
33	33	0.283
34	34	0.0725
35	35	0.604
36	36	0.0653
37	37	0.357
38	38	0.261
39	39	0.556
4	4	0.375
40	40	0.0066
41	41	0.0309
42	42	0.385
43	43	0.449
44	44	0.299
45	45	0.193
46	46	0.082
47	47	0.359
48	48	0.0578
49	49	0.623
5	5	0.684
50	50	0.878
51	51	0.697
52	52	0.951
53	53	0.815
54	54	0.993
55	55	0.694
56	56	0.814
57	57	0.326
58	58	0.362
59	59	0.0654
6	6	0.344
60	60	0.526
61	61	0.853
62	62	0.815
63	63	0.411
64	64	0.45
65	65	0.182
66	66	0.0434
67	67	0.779
68	68	0.0676
69	69	0.374
7	7	0.184
70	70	0.921
71	71	0.601
72	72	0.913
73	73	0.00958
74	74	0.277
75	75	0.491
76	76	0.482
77	77	0.309
78	78	0.755
79	79	0.946
8	8	0.02
80	80	0.0987
81	81	0.516
82	82	0.831
83	83	0.652
84	84	0.136
85	85	0.351
86	86	0.697
87	87	0.134
88	88	0.656
89	89	0.285
9	9	0.082
90	90	0.478
91	91	0.163
92	92	0.55
93	93	0.548
94	94	0.988
95	95	0.277
96	96	0.209
97	97	0.47
98	98	0.147
99	99	0.0257

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11377

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000052 human endothelial cell of the vein sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0002139 (endothelial cell of vascular tree)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000115 (endothelial cell)
0000071 (blood vessel endothelial cell)
0002543 (vein endothelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001638 (vein)
0000483 (epithelium)
0000479 (tissue)
0000055 (vessel)
0004111 (anatomical conduit)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0006914 (squamous epithelium)
0000487 (simple squamous epithelium)
0003920 (venous blood vessel)
0004638 (blood vessel endothelium)
0007500 (epithelial tube open at both ends)
0001981 (blood vessel)
0002049 (vasculature)
0001986 (endothelium)
0010317 (germ layer / neural crest derived structure)
0007798 (vascular system)
0004852 (cardiovascular system endothelium)
0004535 (cardiovascular system)
0004537 (blood vasculature)
0004582 (venous system)
0001009 (circulatory system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000046 (human endothelial cell sample)
0000001 (sample)
0000052 (human endothelial cell of the vein sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0002546 (embryonic blood vessel endothelial progenitor cell)
CL:0000222 (mesodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001638,UBERON:0000483,UBERON:0000926,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0003914,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0005291,UBERON:0000487,UBERON:0001981,UBERON:0003920,UBERON:0002049,UBERON:0001986,UBERON:0004638,UBERON:0007500,UBERON:0006598,UBERON:0007798,UBERON:0004852,UBERON:0002532,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0003081,UBERON:0001009,UBERON:0006603,UBERON:0004872,UBERON:0006965
+|DRA_sample_Accession=CAGE@SAMD00004806
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0002321,CL:0000063,CL:0000066,CL:0002371,CL:0000076,CL:0000115,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000220,CL:0000004,CL:0000255,CL:0000071,CL:0000222,CL:0002543,CL:0002546
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004806
+|accession_numbers=CAGE;DRX008235;DRR009107;DRZ000532;DRZ001917;DRZ011882;DRZ013267
+|accession_numbers_RNASeq=sRNA-Seq;DRX037118;DRR041484;DRZ007126
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001638,UBERON:0000483,UBERON:0000479,UBERON:0000055,UBERON:0004111,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0000490,UBERON:0006914,UBERON:0000487,UBERON:0003920,UBERON:0004638,UBERON:0007500,UBERON:0001981,UBERON:0002049,UBERON:0001986,UBERON:0010317,UBERON:0007798,UBERON:0004852,UBERON:0004535,UBERON:0004537,UBERON:0004582,UBERON:0001009
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0002139,CL:0000213,CL:0002078,CL:0000215,CL:0000255,CL:0000115,CL:0000071,CL:0002543
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000046,FF:0000001,FF:0000052
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!2.59!506.91!SOX18;;chr21:39870339..39870443,-!p1@ERG!2.11!128.15!ERG;;chr6:34204921..34204939,+!p3@HMGA1!2.01!2853.49!HMGA1;;chr8:10588010..10588030,-!p1@SOX7!1.94!85.43!SOX7;;chr8:55370487..55370503,+!p1@SOX17!1.90!78.79!SOX17;;chr18:53068911..53068935,-!p4@TCF4!1.75!62.65!TCF4;;chr17:6926362..6926377,+!p1@BCL6B!1.75!55.06!BCL6B;;chr19:13213511..13213545,-!p2@LYL1!1.62!43.67!LYL1;;chr22:19748231..19748317,+!p1@TBX1!1.55!34.17!TBX1;;chr12:96588368..96588394,+!p3@ELK3!1.52!83.54!ELK3;;chr1:6479968..6479986,-!p1@HES2!1.39!23.73!HES2;;chr17:41622925..41622976,-!p3@ETV4!1.36!32.28!ETV4;;chr16:86600426..86600441,+!p1@FOXC2!1.33!49.36!FOXC2;;chr11:65429891..65429915,-!p7@RELA!1.23!16.14!RELA;;chr17:46682321..46682362,-!p1@HOXB6!1.21!15.19!HOXB6;;chr9:124991204..124991246,-!p1@LHX6!1.21!15.19!LHX6;;chr7:27205106..27205134,-!p2@HOXA9!1.16!13.29!HOXA9;;chr20:50721803..50721857,-!p2@ZFP64!1.15!20.88!ZFP64;;chr4:57522166..57522260,-!p2@HOPX!1.15!15.19!HOPX;;chr10:8096631..8096660,+!p1@GATA3!1.11!14.24!GATA3;;chr7:27205136..27205164,-!p1@HOXA9!1.09!11.39!HOXA9;;chr19:13213399..13213414,-!p6@LYL1!1.09!11.39!LYL1;;chr17:41623692..41623715,-!p1@ETV4!1.08!47.46!ETV4;;chr12:66218255..66218304,+!p3@HMGA2!1.07!29.43!HMGA2;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.24!HOXB7;;chr17:46691732..46691766,-!p4@HOXB8!1.02!9.49!HOXB8;;chr3:128206762..128206781,-!p2@GATA2!1.00!56.96!GATA2;;chr18:22932080..22932170,-!p1@ZNF521!0.99!37.97!ZNF521;;chr10:8096772..8096787,+!p2@GATA3!0.99!10.44!GATA3;;chr10:31288370..31288393,-!p3@ZNF438!0.98!8.54!ZNF438;;chr10:94449703..94449718,+!p1@HHEX!0.97!33.22!HHEX;;chr19:13213662..13213686,-!p1@LYL1!0.97!12.34!LYL1;;chr15:90544532..90544563,+!p1@ZNF710!0.95!16.14!ZNF710;;chr1:214161272..214161322,+!p1@PROX1!0.95!11.39!PROX1;;chr11:65667846..65667868,-!p1@FOSL1!0.94!210.74!FOSL1;;chr17:46655672..46655697,-!p3@HOXB4!0.93!7.59!HOXB4;;chr18:53068982..53068993,-!p20@TCF4!0.93!7.59!TCF4;;chr6:34204973..34204990,+!p4@HMGA1!0.91!99.67!HMGA1;;chr11:65430554..65430579,-!p3@RELA!0.89!18.04!RELA;;chr1:151032922..151032951,+!p2@MLLT11!0.89!11.39!MLLT11;;chr17:46655704..46655718,-!p2@HOXB4!0.89!10.44!HOXB4;;chr16:30406423..30406447,+!p4@ZNF48!0.88!6.64!ZNF48;;chr7:139741594..139741615,-!p5@PARP12!0.88!6.64!PARP12;;chr1:151032860..151032918,+!p1@MLLT11!0.87!79.74!MLLT11;;chr20:42295713..42295738,+!p2@MYBL2!0.87!39.87!MYBL2;;chr10:8095593..8095625,+!p3@GATA3!0.87!7.59!GATA3;;chr6:34204672..34204692,+!p1@HMGA1!0.86!745.17!HMGA1;;chr11:65667884..65667895,-!p2@FOSL1!0.86!25.63!FOSL1;;chr5:92918919..92918942,+!p1@NR2F1!0.85!28.48!NR2F1;;chr2:85360499..85360598,+!p1@TCF7L1!0.84!35.12!TCF7L1;;chr2:16082155..16082169,+!p3@MYCN!0.83!5.70!MYCN;;chr2:177053386..177053402,+!p1@HOXD1!0.83!5.70!HOXD1;;chr7:139741849..139741879,-!p12@PARP12!0.83!5.70!PARP12;;chr17:8027418..8027432,-!p1@HES7!0.83!5.70!HES7;;chr18:53177984..53178004,-!p17@TCF4!0.83!5.70!TCF4;;chr9:16705069..16705086,-!p3@BNC2!0.83!5.70!BNC2;;chr20:42295745..42295765,+!p1@MYBL2!0.82!97.77!MYBL2;;chr12:66218183..66218209,+!p4@HMGA2!0.82!11.39!HMGA2;;chr3:168864315..168864339,-!p2@MECOM!0.82!9.49!MECOM;;chr2:101436564..101436647,+!p1@NPAS2!0.81!119.61!NPAS2;;chr17:41622765..41622821,-!p2@ETV4!0.81!8.54!ETV4;;chr17:41622834..41622883,-!p6@ETV4!0.81!6.64!ETV4;;chr12:124873357..124873401,-!p1@NCOR2!0.80!67.40!NCOR2;;chr10:94449675..94449694,+!p2@HHEX!0.80!15.19!HHEX;;chr19:45908292..45908374,-!p1@PPP1R13L!0.79!49.36!PPP1R13L;;chr12:66218836..66218888,+!p1@HMGA2!0.78!51.26!HMGA2;;chr9:14314131..14314147,-!p2@NFIB!0.78!30.38!NFIB;;chr11:65430535..65430549,-!p4@RELA!0.76!5.70!RELA;;chr19:13213465..13213478,-!p7@LYL1!0.76!4.75!LYL1;;chr7:27153454..27153469,-!p2@HOXA3!0.76!4.75!HOXA3;;chr7:27183291..27183324,-!p1@HOXA5!0.76!4.75!HOXA5;;chr7:27195867..27195893,-!p3@HOXA7!0.76!4.75!HOXA7;;chr7:27224842..27224872,-!p1@HOXA11!0.76!4.75!HOXA11;;chr8:55370720..55370733,+!p2@SOX17!0.76!4.75!SOX17;;chr1:47695003..47695042,-!p2@TAL1!0.76!4.75!TAL1;;chr1:47696918..47696935,-!p6@TAL1!0.76!4.75!TAL1;;chr2:177001290..177001315,+!p1@HOXD3!0.76!4.75!HOXD3;;chr4:57522598..57522664,-!p3@HOPX!0.76!4.75!HOPX;;chr6:21593973..21593988,+!p1@SOX4!0.75!187.01!SOX4;;chr17:46687959..46688007,-!p2@HOXB7!0.75!6.64!HOXB7;;chr3:178789522..178789564,-!p2@ZMAT3!0.74!37.02!ZMAT3;;chr13:72441315..72441454,-!p1@DACH1!0.74!9.49!DACH1;;chr17:3571863..3571881,-!p1@TAX1BP3!0.73!350.28!TAX1BP3;;chr17:4890695..4890773,-!p2@CAMTA2!0.73!15.19!CAMTA2;;chr20:42543506..42543549,+!p2@TOX2!0.73!11.39!TOX2;;chr1:8938709..8938720,-!p3@ENO1!0.70!222.13!ENO1;;chr6:85474299..85474324,-!p1@TBX18!0.70!7.59!TBX18;;chr11:47237922..47237964,+!p4@DDB2!0.70!4.75!DDB2;;chr12:49454026..49454049,-!p9@MLL2!0.70!4.75!MLL2;;chr20:42543441..42543497,+!p1@TOX2!0.69!19.93!TOX2;;chr8:106330656..106330684,+!p1@ZFPM2!0.69!11.39!ZFPM2;;chr17:7590797..7590815,-!p1@TP53!0.68!188.90!TP53;;chr18:19749541..19749557,+!p1@GATA6!0.68!13.29!GATA6;;chr16:1720809..1720814,+!p6@CRAMP1L!0.68!3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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000071;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000115;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002139;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002543;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000487;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001638;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001981;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007798
+|ffid_belonging_in_development=CL:0002546,CL:0000222
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor2.CNhs11377.11344-117G3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor2.CNhs11377.11344-117G3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor2.CNhs11377.11344-117G3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor2.CNhs11377.11344-117G3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Endothelial%2520Cells%2520-%2520Vein%252c%2520donor2.CNhs11377.11344-117G3.hg38.nobarcode.ctss.bed.gz
 |id=FF:11344-117G3
 |is_a=EFO:0002091;;FF:0000052
 |is_obsolete=
+|library_id=CNhs11377
+|library_id_phase_based=2:CNhs11377
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11344
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.AGTCAA.11344
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11344
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.AGTCAA.11344
 |name=Endothelial Cells - Vein, donor2
 |namespace=FANTOM5
@@ Line 43: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11377,LSID771,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10008,,,
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 |rna_box=117
 |rna_catalog_number=CA200-R10n
@@ Line 57: / Line 82: @@
 |rna_tube_id=117G3
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10008.AGTCAA
 |sample_age=Neonatal
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 79: / Line 106: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11344-117G3;search_select_hide=table117:FF:11344-117G3
 }}

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FF:11344-117G3: Difference between revisions

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Latest revision as of 17:53, 4 June 2020

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